RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13607
         (245 letters)



>d1jkxa_ c.65.1.1 (A:) Glycinamide ribonucleotide transformylase,
           GART {Escherichia coli [TaxId: 562]}
          Length = 209

 Score = 79.5 bits (195), Expect = 1e-18
 Identities = 57/188 (30%), Positives = 91/188 (48%), Gaps = 5/188 (2%)

Query: 57  SNLK-LID-EKTPYYKYEPPPVI---ETAKYTVYYDRTIMTDKTIPNNRPDIVVHDKERR 111
           SNL+ +ID  KT   K     V      A       +  +   T+  +  D         
Sbjct: 12  SNLQAIIDACKTNKIKGTVRAVFSNKADAFGLERARQAGIATHTLIASAFDSREAYDREL 71

Query: 112 MALLVDIAIPNTHNMESTVVLCGEFVNRWRGKLINIHPALLPLFKGMHAHRQALDAGVRV 171
           +  +   A           +L   FV+ + G+L+NIHP+LLP + G+H HRQAL+ G   
Sbjct: 72  IHEIDMYAPDVVVLAGFMRILSPAFVSHYAGRLLNIHPSLLPKYPGLHTHRQALENGDEE 131

Query: 172 TGCTVHFVEESVDAGAIICQESVPIYPRDTEESLSERVKSAEHKAYPRALELVATERVKL 231
            G +VHFV + +D G +I Q  VP++  D+E+ ++ RV++ EH  YP  +   A  R+K+
Sbjct: 132 HGTSVHFVTDELDGGPVILQAKVPVFAGDSEDDITARVQTQEHAIYPLVISWFADGRLKM 191

Query: 232 DLDSGKLD 239
             ++  LD
Sbjct: 192 HENAAWLD 199


>d1meoa_ c.65.1.1 (A:) Glycinamide ribonucleotide transformylase,
           GART {Human (Homo sapiens) [TaxId: 9606]}
          Length = 205

 Score = 78.4 bits (192), Expect = 2e-18
 Identities = 80/190 (42%), Positives = 108/190 (56%), Gaps = 6/190 (3%)

Query: 57  SNLK-LID-EKTPYYKYEPPPVI---ETAKYTVYYDRTIMTDKTIPNNRPDIVVHDKERR 111
           SNL+ LID  + P    +   VI            +R  +  + I +      V      
Sbjct: 12  SNLQALIDSTREPNSSAQIDIVISNKAAVAGLDKAERAGIPTRVINHKLYKNRVEFDSAI 71

Query: 112 MALLVDIAIPNTHNMESTVVLCGEFVNRWRGKLINIHPALLPLFKGMHAHRQALDAGVRV 171
             +L + +I          +L G FV +W GK++NIHP+LLP FKG +AH QAL+ GV V
Sbjct: 72  DLVLEEFSIDIVCLAGFMRILSGPFVQKWNGKMLNIHPSLLPSFKGSNAHEQALETGVTV 131

Query: 172 TGCTVHFVEESVDAGAIICQESVPIYPRDTEESLSERVKSAEHKAYPRALELVATERVKL 231
           TGCTVHFV E VDAG II QE+VP+   DT  +LSERVK AEHK +P AL+LVA+  V+L
Sbjct: 132 TGCTVHFVAEDVDAGQIILQEAVPVKRGDTVATLSERVKLAEHKIFPAALQLVASGTVQL 191

Query: 232 DLDSGKLDFN 241
             ++GK+ + 
Sbjct: 192 G-ENGKICWV 200


>d1fmta2 c.65.1.1 (A:1-206) Methionyl-tRNAfmet formyltransferase
           {Escherichia coli [TaxId: 562]}
          Length = 206

 Score = 56.2 bits (134), Expect = 2e-10
 Identities = 25/96 (26%), Positives = 47/96 (48%)

Query: 136 FVNRWRGKLINIHPALLPLFKGMHAHRQALDAGVRVTGCTVHFVEESVDAGAIICQESVP 195
            +   R   IN+H +LLP ++G    +++L AG   TG T+  ++  +D G ++ + S P
Sbjct: 98  VLEMPRLGCINVHGSLLPRWRGAAPIQRSLWAGDAETGVTIMQMDVGLDTGDMLYKLSCP 157

Query: 196 IYPRDTEESLSERVKSAEHKAYPRALELVATERVKL 231
           I   DT  +L +++     +     L+ +A    K 
Sbjct: 158 ITAEDTSGTLYDKLAELGPQGLITTLKQLADGTAKP 193


>d1kf6d_ f.21.2.2 (D:) Fumarate reductase subunit FrdD {Escherichia
           coli [TaxId: 562]}
          Length = 119

 Score = 27.0 bits (60), Expect = 1.1
 Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 13/56 (23%)

Query: 136 FVNRWRGKLINIHPALLPLFKGMHAHRQAL-DAGVRVTGCTVHFVEESVDAGAIIC 190
           F   + G++      +LPL+ G+H    A+ D  +             V AG  + 
Sbjct: 58  FAQSFIGRVFLFLMIVLPLWCGLHRMHHAMHDLKIH------------VPAGKWVF 101


>d1tu9a_ a.1.1.2 (A:) Hypothetical protein PA3967 {Pseudomonas
           aeruginosa [TaxId: 287]}
          Length = 131

 Score = 26.9 bits (59), Expect = 1.2
 Identities = 5/55 (9%), Positives = 13/55 (23%)

Query: 135 EFVNRWRGKLINIHPALLPLFKGMHAHRQALDAGVRVTGCTVHFVEESVDAGAII 189
            F + +    +   P +   F       Q       +    ++    S      +
Sbjct: 18  GFFDDFYRHFLASSPQIRAKFATTDMTAQKHLLRAGIMNLVMYARGMSDSKLRAL 72


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.134    0.398 

Gapped
Lambda     K      H
   0.267   0.0683    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 910,319
Number of extensions: 40443
Number of successful extensions: 100
Number of sequences better than 10.0: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 8
Length of query: 245
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 162
Effective length of database: 1,268,006
Effective search space: 205416972
Effective search space used: 205416972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (23.9 bits)