BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13609
(182 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3F9M|A Chain A, Human Pancreatic Glucokinase In Complex With Glucose And
Activator Showing A Mobile Flap
pdb|3FGU|A Chain A, Catalytic Complex Of Human Glucokinase
pdb|3ID8|A Chain A, Ternary Complex Of Human Pancreatic Glucokinase
Crystallized With Activator, Glucose And Amp-Pnp
pdb|3IDH|A Chain A, Human Pancreatic Glucokinase In Complex With Glucose
pdb|3VEV|A Chain A, Glucokinase In Complex With An Activator And Glucose
pdb|3VF6|A Chain A, Glucokinase In Complex With Glucose And Activator
Length = 470
Score = 57.0 bits (136), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 56/123 (45%), Gaps = 8/123 (6%)
Query: 1 FEKYISGKYXXXXXXXXXXXXXXXXXXFNGVSSEDLVTPNAFRTSFVSLIEQDSVDGLTH 60
+EK I GKY F+G +SE L T AF T FVS +E D+ D
Sbjct: 294 YEKLIGGKYMGELVRLVLLRLVDENLLFHGEASEQLRTRGAFETRFVSQVESDTGDRKQI 353
Query: 61 YTEKVLDDLGLTYNDDDILIVQRVCHLLSLRATLLVSICTAVLVRRI------DRDDITI 114
Y +L LGL + D IV+R C +S RA + S A ++ R+ D IT+
Sbjct: 354 YN--ILSTLGLRPSTTDCDIVRRACESVSTRAAHMCSAGLAGVINRMRESRSEDVMRITV 411
Query: 115 AVD 117
VD
Sbjct: 412 GVD 414
Score = 31.2 bits (69), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
Query: 116 VDRIRQMCGRQLFNSEVFYYISGKYXXXXXXXXXXXXXXXXXXFNGVSSEDLVTPNAFRT 175
VD G+QL+ I GKY F+G +SE L T AF T
Sbjct: 282 VDESSANPGQQLYEK----LIGGKYMGELVRLVLLRLVDENLLFHGEASEQLRTRGAFET 337
Query: 176 SFVSLIE 182
FVS +E
Sbjct: 338 RFVSQVE 344
>pdb|3S41|A Chain A, Glucokinase In Complex With Activator And Glucose
pdb|4DHY|A Chain A, Crystal Structure Of Human Glucokinase In Complex With
Glucose And Activator
Length = 469
Score = 57.0 bits (136), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 56/123 (45%), Gaps = 8/123 (6%)
Query: 1 FEKYISGKYXXXXXXXXXXXXXXXXXXFNGVSSEDLVTPNAFRTSFVSLIEQDSVDGLTH 60
+EK I GKY F+G +SE L T AF T FVS +E D+ D
Sbjct: 293 YEKLIGGKYMGELVRLVLLRLVDENLLFHGEASEQLRTRGAFETRFVSQVESDTGDRKQI 352
Query: 61 YTEKVLDDLGLTYNDDDILIVQRVCHLLSLRATLLVSICTAVLVRRI------DRDDITI 114
Y +L LGL + D IV+R C +S RA + S A ++ R+ D IT+
Sbjct: 353 YN--ILSTLGLRPSTTDCDIVRRACESVSTRAAHMCSAGLAGVINRMRESRSEDVMRITV 410
Query: 115 AVD 117
VD
Sbjct: 411 GVD 413
Score = 31.2 bits (69), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
Query: 116 VDRIRQMCGRQLFNSEVFYYISGKYXXXXXXXXXXXXXXXXXXFNGVSSEDLVTPNAFRT 175
VD G+QL+ I GKY F+G +SE L T AF T
Sbjct: 281 VDESSANPGQQLYEK----LIGGKYMGELVRLVLLRLVDENLLFHGEASEQLRTRGAFET 336
Query: 176 SFVSLIE 182
FVS +E
Sbjct: 337 RFVSQVE 343
>pdb|3IMX|A Chain A, Crystal Structure Of Human Glucokinase In Complex With A
Synthetic Activator
Length = 455
Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 56/123 (45%), Gaps = 8/123 (6%)
Query: 1 FEKYISGKYXXXXXXXXXXXXXXXXXXFNGVSSEDLVTPNAFRTSFVSLIEQDSVDGLTH 60
+EK I GKY F+G +SE L T AF T FVS +E D+ D
Sbjct: 279 YEKLIGGKYMGELVRLVLLRLVDENLLFHGEASEQLRTRGAFETRFVSQVESDTGDRKQI 338
Query: 61 YTEKVLDDLGLTYNDDDILIVQRVCHLLSLRATLLVSICTAVLVRRI------DRDDITI 114
Y +L LGL + D IV+R C +S RA + S A ++ R+ D IT+
Sbjct: 339 YN--ILSTLGLRPSTTDCDIVRRACESVSTRAAHMCSAGLAGVINRMRESRSEDVMRITV 396
Query: 115 AVD 117
VD
Sbjct: 397 GVD 399
Score = 31.2 bits (69), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
Query: 116 VDRIRQMCGRQLFNSEVFYYISGKYXXXXXXXXXXXXXXXXXXFNGVSSEDLVTPNAFRT 175
VD G+QL+ I GKY F+G +SE L T AF T
Sbjct: 267 VDESSANPGQQLYEK----LIGGKYMGELVRLVLLRLVDENLLFHGEASEQLRTRGAFET 322
Query: 176 SFVSLIE 182
FVS +E
Sbjct: 323 RFVSQVE 329
>pdb|1V4T|A Chain A, Crystal Structure Of Human Glucokinase
pdb|3H1V|X Chain X, Human Glucokinase In Complex With A Synthetic Activator
Length = 451
Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 56/123 (45%), Gaps = 8/123 (6%)
Query: 1 FEKYISGKYXXXXXXXXXXXXXXXXXXFNGVSSEDLVTPNAFRTSFVSLIEQDSVDGLTH 60
+EK I GKY F+G +SE L T AF T FVS +E D+ D
Sbjct: 275 YEKLIGGKYMGELVRLVLLRLVDENLLFHGEASEQLRTRGAFETRFVSQVESDTGDRKQI 334
Query: 61 YTEKVLDDLGLTYNDDDILIVQRVCHLLSLRATLLVSICTAVLVRRI------DRDDITI 114
Y +L LGL + D IV+R C +S RA + S A ++ R+ D IT+
Sbjct: 335 YN--ILSTLGLRPSTTDCDIVRRACESVSTRAAHMCSAGLAGVINRMRESRSEDVMRITV 392
Query: 115 AVD 117
VD
Sbjct: 393 GVD 395
Score = 31.2 bits (69), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
Query: 116 VDRIRQMCGRQLFNSEVFYYISGKYXXXXXXXXXXXXXXXXXXFNGVSSEDLVTPNAFRT 175
VD G+QL+ I GKY F+G +SE L T AF T
Sbjct: 263 VDESSANPGQQLYEK----LIGGKYMGELVRLVLLRLVDENLLFHGEASEQLRTRGAFET 318
Query: 176 SFVSLIE 182
FVS +E
Sbjct: 319 RFVSQVE 325
>pdb|4DCH|A Chain A, Insights Into Glucokinase Activation Mechanism:
Observation Of Multiple Distinct Protein Conformations
Length = 473
Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 56/123 (45%), Gaps = 8/123 (6%)
Query: 1 FEKYISGKYXXXXXXXXXXXXXXXXXXFNGVSSEDLVTPNAFRTSFVSLIEQDSVDGLTH 60
+EK I GKY F+G +SE L T AF T FVS +E D+ D
Sbjct: 289 YEKLIGGKYMGELVRLVLLRLVDENLLFHGEASEQLRTRGAFETRFVSQVESDTGDRKQI 348
Query: 61 YTEKVLDDLGLTYNDDDILIVQRVCHLLSLRATLLVSICTAVLVRRI------DRDDITI 114
Y +L LGL + D IV+R C +S RA + S A ++ R+ D IT+
Sbjct: 349 YN--ILSTLGLRPSTTDCDIVRRACESVSTRAAHMCSAGLAGVINRMRESRSEDVMRITV 406
Query: 115 AVD 117
VD
Sbjct: 407 GVD 409
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
Query: 116 VDRIRQMCGRQLFNSEVFYYISGKYXXXXXXXXXXXXXXXXXXFNGVSSEDLVTPNAFRT 175
VD G+QL+ I GKY F+G +SE L T AF T
Sbjct: 277 VDESSANPGQQLYEK----LIGGKYMGELVRLVLLRLVDENLLFHGEASEQLRTRGAFET 332
Query: 176 SFVSLIE 182
FVS +E
Sbjct: 333 RFVSQVE 339
>pdb|1V4S|A Chain A, Crystal Structure Of Human Glucokinase
pdb|3VEY|A Chain A, Glucokinase In Complex With Glucose And Atpgs
Length = 455
Score = 56.6 bits (135), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 56/123 (45%), Gaps = 8/123 (6%)
Query: 1 FEKYISGKYXXXXXXXXXXXXXXXXXXFNGVSSEDLVTPNAFRTSFVSLIEQDSVDGLTH 60
+EK I GKY F+G +SE L T AF T FVS +E D+ D
Sbjct: 279 YEKLIGGKYMGELVRLVLLRLVDENLLFHGEASEQLRTRGAFETRFVSQVESDTGDRKQI 338
Query: 61 YTEKVLDDLGLTYNDDDILIVQRVCHLLSLRATLLVSICTAVLVRRI------DRDDITI 114
Y +L LGL + D IV+R C +S RA + S A ++ R+ D IT+
Sbjct: 339 YN--ILSTLGLRPSTTDCDIVRRACESVSTRAAHMCSAGLAGVINRMRESRSEDVMRITV 396
Query: 115 AVD 117
VD
Sbjct: 397 GVD 399
Score = 31.2 bits (69), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
Query: 116 VDRIRQMCGRQLFNSEVFYYISGKYXXXXXXXXXXXXXXXXXXFNGVSSEDLVTPNAFRT 175
VD G+QL+ I GKY F+G +SE L T AF T
Sbjct: 267 VDESSANPGQQLYEK----LIGGKYMGELVRLVLLRLVDENLLFHGEASEQLRTRGAFET 322
Query: 176 SFVSLIE 182
FVS +E
Sbjct: 323 RFVSQVE 329
>pdb|3HM8|A Chain A, Crystal Structure Of The C-Terminal Hexokinase Domain Of
Human Hk3
pdb|3HM8|B Chain B, Crystal Structure Of The C-Terminal Hexokinase Domain Of
Human Hk3
pdb|3HM8|C Chain C, Crystal Structure Of The C-Terminal Hexokinase Domain Of
Human Hk3
pdb|3HM8|D Chain D, Crystal Structure Of The C-Terminal Hexokinase Domain Of
Human Hk3
Length = 445
Score = 56.6 bits (135), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 48/107 (44%), Gaps = 2/107 (1%)
Query: 1 FEKYISGKYXXXXXXXXXXXXXXXXXXFNGVSSEDLVTPNAFRTSFVSLIEQDSVDGLTH 60
FEK ISG Y F G + L T + F+T F+S IE DS+
Sbjct: 270 FEKMISGMYLGEIVRHILLHLTSLGVLFRGQQIQRLQTRDIFKTKFLSEIESDSL--ALR 327
Query: 61 YTEKVLDDLGLTYNDDDILIVQRVCHLLSLRATLLVSICTAVLVRRI 107
+L+DLGL DD L+V VC +S RA L A +V +I
Sbjct: 328 QVRAILEDLGLPLTSDDALMVLEVCQAVSQRAAQLCGAGVAAVVEKI 374
>pdb|3FR0|A Chain A, Human Glucokinase In Complex With 2-Amino Benzamide
Activator
pdb|3A0I|X Chain X, Human Glucokinase In Complex With A Synthetic Activator
pdb|3GOI|A Chain A, Human Glucokinase In Complex With A Synthetic Activator
Length = 455
Score = 56.6 bits (135), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 56/123 (45%), Gaps = 8/123 (6%)
Query: 1 FEKYISGKYXXXXXXXXXXXXXXXXXXFNGVSSEDLVTPNAFRTSFVSLIEQDSVDGLTH 60
+EK I GKY F+G +SE L T AF T FVS +E D+ D
Sbjct: 279 YEKLIGGKYMGELVRLVLLRLVDENLLFHGEASEQLRTRGAFETRFVSQVESDTGDRKQI 338
Query: 61 YTEKVLDDLGLTYNDDDILIVQRVCHLLSLRATLLVSICTAVLVRRI------DRDDITI 114
Y +L LGL + D IV+R C +S RA + S A ++ R+ D IT+
Sbjct: 339 YN--ILSTLGLRPSTTDCDIVRRACESVSTRAAHMCSAGLAGVINRMRESRSEDVMRITV 396
Query: 115 AVD 117
VD
Sbjct: 397 GVD 399
Score = 31.2 bits (69), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
Query: 116 VDRIRQMCGRQLFNSEVFYYISGKYXXXXXXXXXXXXXXXXXXFNGVSSEDLVTPNAFRT 175
VD G+QL+ I GKY F+G +SE L T AF T
Sbjct: 267 VDESSANPGQQLYEK----LIGGKYMGELVRLVLLRLVDENLLFHGEASEQLRTRGAFET 322
Query: 176 SFVSLIE 182
FVS +E
Sbjct: 323 RFVSQVE 329
>pdb|1HKB|A Chain A, Crystal Structure Of Recombinant Human Brain Hexokinase
Type I Complexed With Glucose And Glucose-6-Phosphate
pdb|1HKB|B Chain B, Crystal Structure Of Recombinant Human Brain Hexokinase
Type I Complexed With Glucose And Glucose-6-Phosphate
Length = 917
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 62/124 (50%), Gaps = 5/124 (4%)
Query: 1 FEKYISGKYXXXXXXXXXXXXXXXXXXFNGVSSEDLVTPNAFRTSFVSLIEQDSVDGLTH 60
FEK +SG Y F G + +L+T F TS VS IE++ +GL H
Sbjct: 293 FEKMVSGMYLGELVRLILVKMAKEGLLFEGRITPELLTRGKFNTSDVSAIEKNK-EGL-H 350
Query: 61 YTEKVLDDLGLTYNDDDILIVQRVCHLLSLRATLLVSICTAVLVRRIDRDDITIAVDRIR 120
+++L LG+ +DDD + VQ VC ++S R+ LV+ ++ R+ RD+ R+R
Sbjct: 351 NAKEILTRLGVEPSDDDCVSVQHVCTIVSFRSANLVAATLGAILNRL-RDN--KGTPRLR 407
Query: 121 QMCG 124
G
Sbjct: 408 TTVG 411
Score = 53.1 bits (126), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 55/123 (44%), Gaps = 8/123 (6%)
Query: 1 FEKYISGKYXXXXXXXXXXXXXXXXXXFNGVSSEDLVTPNAFRTSFVSLIEQDSVDGLTH 60
+EK ISG Y F G SE L T F T F+S IE D + L
Sbjct: 741 YEKMISGMYLGEIVRNILIDFTKKGFLFRGQISETLKTRGIFETKFLSQIESDRLALLQ- 799
Query: 61 YTEKVLDDLGLTYNDDDILIVQRVCHLLSLRATLLVSICTAVLV------RRIDRDDITI 114
+L LGL DD ++V+ VC ++S RA L A +V R +DR ++T+
Sbjct: 800 -VRAILQQLGLNSTCDDSILVKTVCGVVSRRAAQLCGAGMAAVVDKIRENRGLDRLNVTV 858
Query: 115 AVD 117
VD
Sbjct: 859 GVD 861
>pdb|1DGK|N Chain N, Mutant Monomer Of Recombinant Human Hexokinase Type I With
Glucose And Adp In The Active Site
Length = 917
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 62/124 (50%), Gaps = 5/124 (4%)
Query: 1 FEKYISGKYXXXXXXXXXXXXXXXXXXFNGVSSEDLVTPNAFRTSFVSLIEQDSVDGLTH 60
FEK +SG Y F G + +L+T F TS VS IE++ +GL H
Sbjct: 293 FEKMVSGMYLGELVRLILVKMAKEGLLFEGRITPELLTRGKFNTSDVSAIEKNK-EGL-H 350
Query: 61 YTEKVLDDLGLTYNDDDILIVQRVCHLLSLRATLLVSICTAVLVRRIDRDDITIAVDRIR 120
+++L LG+ +DDD + VQ VC ++S R+ LV+ ++ R+ RD+ R+R
Sbjct: 351 NAKEILTRLGVEPSDDDCVSVQHVCTIVSFRSANLVAATLGAILNRL-RDN--KGTPRLR 407
Query: 121 QMCG 124
G
Sbjct: 408 TTVG 411
Score = 53.1 bits (126), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 55/123 (44%), Gaps = 8/123 (6%)
Query: 1 FEKYISGKYXXXXXXXXXXXXXXXXXXFNGVSSEDLVTPNAFRTSFVSLIEQDSVDGLTH 60
+EK ISG Y F G SE L T F T F+S IE D + L
Sbjct: 741 YEKMISGMYLGEIVRNILIDFTKKGFLFRGQISETLKTRGIFETKFLSQIESDRLALLQ- 799
Query: 61 YTEKVLDDLGLTYNDDDILIVQRVCHLLSLRATLLVSICTAVLV------RRIDRDDITI 114
+L LGL DD ++V+ VC ++S RA L A +V R +DR ++T+
Sbjct: 800 -VRAILQQLGLNSTCDDSILVKTVCGVVSRRAAQLCGAGMAAVVDKIRENRGLDRLNVTV 858
Query: 115 AVD 117
VD
Sbjct: 859 GVD 861
>pdb|1CZA|N Chain N, Mutant Monomer Of Recombinant Human Hexokinase Type I
Complexed With Glucose, Glucose-6-Phosphate, And Adp
Length = 917
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 62/124 (50%), Gaps = 5/124 (4%)
Query: 1 FEKYISGKYXXXXXXXXXXXXXXXXXXFNGVSSEDLVTPNAFRTSFVSLIEQDSVDGLTH 60
FEK +SG Y F G + +L+T F TS VS IE++ +GL H
Sbjct: 293 FEKMVSGMYLGELVRLILVKMAKEGLLFEGRITPELLTRGKFNTSDVSAIEKNK-EGL-H 350
Query: 61 YTEKVLDDLGLTYNDDDILIVQRVCHLLSLRATLLVSICTAVLVRRIDRDDITIAVDRIR 120
+++L LG+ +DDD + VQ VC ++S R+ LV+ ++ R+ RD+ R+R
Sbjct: 351 NAKEILTRLGVEPSDDDCVSVQHVCTIVSFRSANLVAATLGAILNRL-RDN--KGTPRLR 407
Query: 121 QMCG 124
G
Sbjct: 408 TTVG 411
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 55/123 (44%), Gaps = 8/123 (6%)
Query: 1 FEKYISGKYXXXXXXXXXXXXXXXXXXFNGVSSEDLVTPNAFRTSFVSLIEQDSVDGLTH 60
+EK ISG Y F G SE L T F T F+S IE D + L
Sbjct: 741 YEKMISGMYLGEIVRNILIDFTKKGFLFRGQISETLKTRGIFETKFLSQIESDRLALLQ- 799
Query: 61 YTEKVLDDLGLTYNDDDILIVQRVCHLLSLRATLLVSICTAVLV------RRIDRDDITI 114
+L LGL DD ++V+ VC ++S RA L A +V R +DR ++T+
Sbjct: 800 -VRAILQQLGLNSTCDDSILVKTVCGVVSRRAAQLCGAGMAAVVDKIRENRGLDRLNVTV 858
Query: 115 AVD 117
VD
Sbjct: 859 GVD 861
>pdb|3QIC|A Chain A, The Structure Of Human Glucokinase E339k Mutation
Length = 470
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 56/123 (45%), Gaps = 8/123 (6%)
Query: 1 FEKYISGKYXXXXXXXXXXXXXXXXXXFNGVSSEDLVTPNAFRTSFVSLIEQDSVDGLTH 60
+EK I GKY F+G +SE L T AF T FVS ++ D+ D
Sbjct: 294 YEKLIGGKYMGELVRLVLLRLVDENLLFHGEASEQLRTRGAFETRFVSQVKSDTGDRKQI 353
Query: 61 YTEKVLDDLGLTYNDDDILIVQRVCHLLSLRATLLVSICTAVLVRRI------DRDDITI 114
Y +L LGL + D IV+R C +S RA + S A ++ R+ D IT+
Sbjct: 354 YN--ILSTLGLRPSTTDCDIVRRACESVSTRAAHMCSAGLAGVINRMRESRSEDVMRITV 411
Query: 115 AVD 117
VD
Sbjct: 412 GVD 414
Score = 29.6 bits (65), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
Query: 116 VDRIRQMCGRQLFNSEVFYYISGKYXXXXXXXXXXXXXXXXXXFNGVSSEDLVTPNAFRT 175
VD G+QL+ I GKY F+G +SE L T AF T
Sbjct: 282 VDESSANPGQQLYEK----LIGGKYMGELVRLVLLRLVDENLLFHGEASEQLRTRGAFET 337
Query: 176 SFVSLIE 182
FVS ++
Sbjct: 338 RFVSQVK 344
>pdb|1HKC|A Chain A, Recombinant Human Hexokinase Type I Complexed With Glucose
And Phosphate
pdb|1QHA|A Chain A, Human Hexokinase Type I Complexed With Atp Analogue
Amp-Pnp
pdb|1QHA|B Chain B, Human Hexokinase Type I Complexed With Atp Analogue
Amp-Pnp
Length = 917
Score = 54.7 bits (130), Expect = 3e-08, Method: Composition-based stats.
Identities = 37/111 (33%), Positives = 58/111 (52%), Gaps = 3/111 (2%)
Query: 1 FEKYISGKYXXXXXXXXXXXXXXXXXXFNGVSSEDLVTPNAFRTSFVSLIEQDSVDGLTH 60
FEK +SG Y F G + +L+T F TS VS IE++ +GL H
Sbjct: 293 FEKMVSGMYLGELVRLILVKMAKEGLLFEGRITPELLTRGKFNTSDVSAIEKNK-EGL-H 350
Query: 61 YTEKVLDDLGLTYNDDDILIVQRVCHLLSLRATLLVSICTAVLVRRIDRDD 111
+++L LG+ +DDD + VQ VC ++S R+ LV+ ++ R+ RD+
Sbjct: 351 NAKEILTRLGVEPSDDDCVSVQHVCTIVSFRSANLVAATLGAILNRL-RDN 400
Score = 54.3 bits (129), Expect = 4e-08, Method: Composition-based stats.
Identities = 41/123 (33%), Positives = 55/123 (44%), Gaps = 8/123 (6%)
Query: 1 FEKYISGKYXXXXXXXXXXXXXXXXXXFNGVSSEDLVTPNAFRTSFVSLIEQDSVDGLTH 60
+EK ISG Y F G SE L T F T F+S IE D + L
Sbjct: 741 YEKMISGMYLGEIVRNILIDFTKKGFLFRGQISETLKTRGIFETKFLSQIESDRLALLQ- 799
Query: 61 YTEKVLDDLGLTYNDDDILIVQRVCHLLSLRATLLVSICTAVLV------RRIDRDDITI 114
+L LGL DD ++V+ VC ++S RA L A +V R +DR ++T+
Sbjct: 800 -VRAILQQLGLNSTCDDSILVKTVCGVVSRRAAQLCGAGMAAVVDKIRENRGLDRLNVTV 858
Query: 115 AVD 117
VD
Sbjct: 859 GVD 861
>pdb|2NZT|A Chain A, Crystal Structure Of Human Hexokinase Ii
pdb|2NZT|B Chain B, Crystal Structure Of Human Hexokinase Ii
Length = 902
Score = 53.5 bits (127), Expect = 6e-08, Method: Composition-based stats.
Identities = 42/123 (34%), Positives = 53/123 (43%), Gaps = 8/123 (6%)
Query: 1 FEKYISGKYXXXXXXXXXXXXXXXXXXFNGVSSEDLVTPNAFRTSFVSLIEQDSVDGLTH 60
FEK ISG Y F G SE L T F T F+S IE D + L
Sbjct: 727 FEKMISGMYLGEIVRNILIDFTKRGLLFRGRISERLKTRGIFETKFLSQIESDCLALLQ- 785
Query: 61 YTEKVLDDLGLTYNDDDILIVQRVCHLLSLRATLLVSICTAVLVRRI------DRDDITI 114
+L LGL DD +IV+ VC +++ RA L A +V RI D +T+
Sbjct: 786 -VRAILQHLGLESTCDDSIIVKEVCTVVARRAAQLCGAGMAAVVDRIRENRGLDALKVTV 844
Query: 115 AVD 117
VD
Sbjct: 845 GVD 847
Score = 47.0 bits (110), Expect = 6e-06, Method: Composition-based stats.
Identities = 37/124 (29%), Positives = 52/124 (41%), Gaps = 5/124 (4%)
Query: 1 FEKYISGKYXXXXXXXXXXXXXXXXXXFNGVSSEDLVTPNAFRTSFVSLIEQDSVDGLTH 60
FEK ISG Y F G S +L+ F T +S IE + DG+
Sbjct: 279 FEKMISGMYMGELVRLILVKMAKEELLFGGKLSPELLNTGRFETKDISDIEGEK-DGIRK 337
Query: 61 YTEKVLDDLGLTYNDDDILIVQRVCHLLSLRATLLVSICTAVLVRRIDRDDITIAVDRIR 120
E VL LGL +D + R+C ++S R+ S+C A L + R +R+R
Sbjct: 338 ARE-VLMRLGLDPTQEDCVATHRICQIVSTRSA---SLCAATLAAVLQRIKENKGEERLR 393
Query: 121 QMCG 124
G
Sbjct: 394 STIG 397
Score = 29.6 bits (65), Expect = 1.0, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 28/74 (37%), Gaps = 4/74 (5%)
Query: 109 RDDITIAVDRIRQMCGRQLFNSEVFYYISGKYXXXXXXXXXXXXXXXXXXFNGVSSEDLV 168
R + +AVD + G+Q F ISG Y F G SE L
Sbjct: 708 RTEFDVAVDELSLNPGKQRFEK----MISGMYLGEIVRNILIDFTKRGLLFRGRISERLK 763
Query: 169 TPNAFRTSFVSLIE 182
T F T F+S IE
Sbjct: 764 TRGIFETKFLSQIE 777
>pdb|1BG3|A Chain A, Rat Brain Hexokinase Type I Complex With Glucose And
Inhibitor Glucose-6-Phosphate
pdb|1BG3|B Chain B, Rat Brain Hexokinase Type I Complex With Glucose And
Inhibitor Glucose-6-Phosphate
Length = 918
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 54/123 (43%), Gaps = 8/123 (6%)
Query: 1 FEKYISGKYXXXXXXXXXXXXXXXXXXFNGVSSEDLVTPNAFRTSFVSLIEQDSVDGLTH 60
FEK ISG Y F G SE L T F T F+S IE D + L
Sbjct: 741 FEKMISGMYLGEIVRNILIDFTKKGFLFRGQISEPLKTRGIFETKFLSQIESDRLALLQ- 799
Query: 61 YTEKVLDDLGLTYNDDDILIVQRVCHLLSLRATLLVSICTAVLVRRI------DRDDITI 114
+L LGL DD ++V+ VC ++S RA L A +V +I D ++T+
Sbjct: 800 -VRAILQQLGLNSTCDDSILVKTVCGVVSKRAAQLCGAGMAAVVEKIRENRGLDHLNVTV 858
Query: 115 AVD 117
VD
Sbjct: 859 GVD 861
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 60/124 (48%), Gaps = 5/124 (4%)
Query: 1 FEKYISGKYXXXXXXXXXXXXXXXXXXFNGVSSEDLVTPNAFRTSFVSLIEQDSVDGLTH 60
FEK +SG Y F G + +L+T F TS VS IE+D +G+ +
Sbjct: 293 FEKMVSGMYMGELVRLILVKMAKEGLLFEGRITPELLTRGKFNTSDVSAIEKDK-EGIQN 351
Query: 61 YTEKVLDDLGLTYNDDDILIVQRVCHLLSLRATLLVSICTAVLVRRIDRDDITIAVDRIR 120
E +L LG+ +D D + VQ +C ++S R+ LV+ ++ R+ RD+ R+R
Sbjct: 352 AKE-ILTRLGVEPSDVDCVSVQHICTIVSFRSANLVAATLGAILNRL-RDN--KGTPRLR 407
Query: 121 QMCG 124
G
Sbjct: 408 TTVG 411
>pdb|1BDG|A Chain A, Hexokinase From Schistosoma Mansoni Complexed With Glucose
Length = 451
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 5/120 (4%)
Query: 1 FEKYISGKYXXXXXXXXXXXXXXXXXXFNGVSSEDLVTPNAFRTSFVSLIEQDSVDGL-- 58
+EK +SG Y F G E L N+ T +++ +E+D L
Sbjct: 282 YEKMVSGMYLGELVRHIIVYLVEQKILFRGDLPERLKVRNSLLTRYLTDVERDPAHLLYN 341
Query: 59 THYTEKVLDDLGLTYNDD-DILIVQRVCHLLSLRATLLVSICTAVLVRRIDRDDITIAVD 117
THY + DDL + + D IV+ C ++ RA L A ++RRI+R ++T+ VD
Sbjct: 342 THYM--LTDDLHVPVVEPIDNRIVRYACEMVVKRAAYLAGAGIACILRRINRSEVTVGVD 399
>pdb|3B8A|X Chain X, Crystal Structure Of Yeast Hexokinase Pi In Complex With
Glucose
Length = 485
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 40/117 (34%)
Query: 1 FEKYISGKYXXXXXXXXXXXXXXXXXXFNGVSSEDLVTPNAFRTSFVSLIEQDSVDGLTH 60
FEK SG Y L P TS+ + IE D + L
Sbjct: 301 FEKMTSGYYLGELLRLVLLELNEKGLMLKDQDLSKLKQPYIMDTSYPARIEDDPFENLED 360
Query: 61 YTEKVLDDLGLTYNDDDILIVQRVCHLLSLRATLLVSICTAVLVRRIDRDDITIAVD 117
+ D G+ + +++R+C L+ RA L A + ++ IA D
Sbjct: 361 TDDIFQKDFGVKTTLPERKLIRRLCELIGTRAARLAVCGIAAICQKRGYKTGHIAAD 417
>pdb|1EYY|A Chain A, Crystal Structure Of The Nadp+ Dependent Aldehyde
Dehydrogenase From Vibrio Harveyi.
pdb|1EYY|B Chain B, Crystal Structure Of The Nadp+ Dependent Aldehyde
Dehydrogenase From Vibrio Harveyi.
pdb|1EYY|C Chain C, Crystal Structure Of The Nadp+ Dependent Aldehyde
Dehydrogenase From Vibrio Harveyi.
pdb|1EYY|D Chain D, Crystal Structure Of The Nadp+ Dependent Aldehyde
Dehydrogenase From Vibrio Harveyi.
pdb|1EZ0|A Chain A, Crystal Structure Of The Nadp+ Dependent Aldehyde
Dehydrogenase From Vibrio Harveyi.
pdb|1EZ0|B Chain B, Crystal Structure Of The Nadp+ Dependent Aldehyde
Dehydrogenase From Vibrio Harveyi.
pdb|1EZ0|C Chain C, Crystal Structure Of The Nadp+ Dependent Aldehyde
Dehydrogenase From Vibrio Harveyi.
pdb|1EZ0|D Chain D, Crystal Structure Of The Nadp+ Dependent Aldehyde
Dehydrogenase From Vibrio Harveyi
Length = 510
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Query: 78 ILIVQRVCHLLSLRATLLVSICTAVLVRRIDRDDITIAVDRIRQMCGRQLFNS-----EV 132
I++ + V +LSL L S+ + D ++ + R+ ++ GR +FN EV
Sbjct: 385 IVVCENVADMLSLSEMLAGSLTATIHATEEDYPQVSQLIPRLEEIAGRLVFNGWPTGVEV 444
Query: 133 FYYI--SGKY 140
Y + G Y
Sbjct: 445 GYAMVHGGPY 454
>pdb|3ZMD|A Chain A, Crystal Structure Of Absc, A Marr Family Transcriptional
Regulator From Streptomyces Coelicolor
pdb|3ZMD|B Chain B, Crystal Structure Of Absc, A Marr Family Transcriptional
Regulator From Streptomyces Coelicolor
pdb|3ZMD|C Chain C, Crystal Structure Of Absc, A Marr Family Transcriptional
Regulator From Streptomyces Coelicolor
pdb|3ZMD|D Chain D, Crystal Structure Of Absc, A Marr Family Transcriptional
Regulator From Streptomyces Coelicolor
Length = 178
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 58 LTHYTEKVLDDLGLTYNDDDILI 80
LTH EK L GLT ND +IL+
Sbjct: 48 LTHQLEKDLQPFGLTMNDYEILV 70
>pdb|1IG8|A Chain A, Crystal Structure Of Yeast Hexokinase Pii With The Correct
Amino Acid Sequence
Length = 486
Score = 26.6 bits (57), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 39 PNAFRTSFVSLIEQDSVDGLTHYTEKVLDDLGLTYNDDDILIVQRVCHLLSLRATLLVSI 98
P TS+ + IE+D + L + ++ G+ + +++R+ L+ RA L S+
Sbjct: 339 PFVMDTSYPARIEEDPFENLEDTDDLFQNEFGINTTVQERKLIRRLSELIGARAARL-SV 397
Query: 99 C 99
C
Sbjct: 398 C 398
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.140 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,972,326
Number of Sequences: 62578
Number of extensions: 125051
Number of successful extensions: 411
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 345
Number of HSP's gapped (non-prelim): 46
length of query: 182
length of database: 14,973,337
effective HSP length: 93
effective length of query: 89
effective length of database: 9,153,583
effective search space: 814668887
effective search space used: 814668887
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 48 (23.1 bits)