RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13609
(182 letters)
>gnl|CDD|202746 pfam03727, Hexokinase_2, Hexokinase. Hexokinase (EC:2.7.1.1)
contains two structurally similar domains represented by
this family and pfam00349. Some members of the family
have two copies of each of these domains.
Length = 238
Score = 98.1 bits (245), Expect = 1e-25
Identities = 50/124 (40%), Positives = 72/124 (58%), Gaps = 9/124 (7%)
Query: 1 FEKYISGKYLGELVRVVLCRLVRDGLLFNGVSSEDLVTPNAFRTSFVSLIEQDSVDGLTH 60
FEK ISG YLGE+VR++L L + GLLF G S L+TP +F TS +S IE DS + L
Sbjct: 70 FEKMISGMYLGEIVRLILLDLAKQGLLFKGQDSPKLLTPGSFETSVLSRIESDS-ENL-E 127
Query: 61 YTEKVL-DDLGLTYNDDDILIVQRVCHLLSLRATLLVSICTAVLVRRI------DRDDIT 113
+L LGL D++ +V+RVC +S RA L + A ++++I + +T
Sbjct: 128 DVRAILQTALGLETTDEERKLVRRVCEAVSTRAARLCAAGLAAILQKIRENRGYEHLKVT 187
Query: 114 IAVD 117
+ VD
Sbjct: 188 VGVD 191
Score = 61.5 bits (150), Expect = 7e-12
Identities = 31/74 (41%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 109 RDDITIAVDRIRQMCGRQLFNSEVFYYISGKYLGELVRVVLCRLVRDGLLFNGVSSEDLV 168
R + +D G+Q F ISG YLGE+VR++L L + GLLF G S L+
Sbjct: 51 RTKYDVVIDEESPNPGQQRFEK----MISGMYLGEIVRLILLDLAKQGLLFKGQDSPKLL 106
Query: 169 TPNAFRTSFVSLIE 182
TP +F TS +S IE
Sbjct: 107 TPGSFETSVLSRIE 120
>gnl|CDD|227359 COG5026, COG5026, Hexokinase [Carbohydrate transport and
metabolism].
Length = 466
Score = 61.7 bits (150), Expect = 1e-11
Identities = 38/105 (36%), Positives = 57/105 (54%)
Query: 1 FEKYISGKYLGELVRVVLCRLVRDGLLFNGVSSEDLVTPNAFRTSFVSLIEQDSVDGLTH 60
FEK SG YLGEL+R++L L GL+FNG E L P A TS +S IE+D + L +
Sbjct: 293 FEKMSSGMYLGELLRLILRNLYEQGLIFNGQDPEKLTDPFALSTSVLSRIEEDPFENLRN 352
Query: 61 YTEKVLDDLGLTYNDDDILIVQRVCHLLSLRATLLVSICTAVLVR 105
L+D ++ +++R+ L+ RA L ++ A +V
Sbjct: 353 TLTTFLNDFRAPTTKEERKLIRRLVELIGRRAARLAAVPIAAIVI 397
Score = 40.9 bits (96), Expect = 2e-04
Identities = 24/47 (51%), Positives = 29/47 (61%)
Query: 136 ISGKYLGELVRVVLCRLVRDGLLFNGVSSEDLVTPNAFRTSFVSLIE 182
SG YLGEL+R++L L GL+FNG E L P A TS +S IE
Sbjct: 297 SSGMYLGELLRLILRNLYEQGLIFNGQDPEKLTDPFALSTSVLSRIE 343
>gnl|CDD|240270 PTZ00107, PTZ00107, hexokinase; Provisional.
Length = 464
Score = 59.3 bits (144), Expect = 9e-11
Identities = 30/120 (25%), Positives = 58/120 (48%), Gaps = 10/120 (8%)
Query: 1 FEKYISGKYLGELVRVVLCRLVRDGLLFNGVSSEDLVTPNAFRTSFVSLIEQDSVDGLTH 60
FEK ISG YLGE+ R ++ L++ + + +F + S+I D L
Sbjct: 299 FEKMISGAYLGEISRRLIVHLLQLK------APPKMWQSGSFESEDASMILNDQSPDL-Q 351
Query: 61 YTEKVLDDL-GLTYNDDDILIVQRVCHLLSLRATLLVS-ICTAVLVR-RIDRDDITIAVD 117
++ +V+ + + D+D+ ++++C L+ RA L + A + R + T+A+D
Sbjct: 352 FSRQVIKEAWDVDLTDEDLYTIRKICELVRGRAAQLAAAFIAAPAKKTRTVQGKATVAID 411
Score = 30.8 bits (70), Expect = 0.41
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 10/58 (17%)
Query: 124 GRQLFNSEVFYYISGKYLGELVRVVLCRLVRDGLLFNGVSSEDLVTPNAFRTSFVSLI 181
GRQ F ISG YLGE+ R ++ L++ + + +F + S+I
Sbjct: 295 GRQQFEK----MISGAYLGEISRRLIVHLLQLK------APPKMWQSGSFESEDASMI 342
>gnl|CDD|178502 PLN02914, PLN02914, hexokinase.
Length = 490
Score = 55.7 bits (134), Expect = 2e-09
Identities = 36/110 (32%), Positives = 52/110 (47%)
Query: 1 FEKYISGKYLGELVRVVLCRLVRDGLLFNGVSSEDLVTPNAFRTSFVSLIEQDSVDGLTH 60
FEK ISG YLGE+VR VL ++ LF E L TP A RT + ++QD+ D L
Sbjct: 313 FEKTISGMYLGEIVRRVLLKMAETSDLFGHFVPEKLSTPFALRTPHLCAMQQDNSDDLQA 372
Query: 61 YTEKVLDDLGLTYNDDDILIVQRVCHLLSLRATLLVSICTAVLVRRIDRD 110
+ D LG+ + V VC + R L ++ +++ D
Sbjct: 373 VGSILYDVLGVEASLSARRRVVEVCDTIVKRGGRLAGAGIVGILEKMEED 422
Score = 41.0 bits (96), Expect = 1e-04
Identities = 23/52 (44%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 124 GRQLFNSEVFYYISGKYLGELVRVVLCRLVRDGLLFNGVSSEDLVTPNAFRT 175
G Q+F ISG YLGE+VR VL ++ LF E L TP A RT
Sbjct: 309 GEQIFEKT----ISGMYLGEIVRRVLLKMAETSDLFGHFVPEKLSTPFALRT 356
>gnl|CDD|215206 PLN02362, PLN02362, hexokinase.
Length = 509
Score = 54.9 bits (132), Expect = 3e-09
Identities = 35/111 (31%), Positives = 61/111 (54%), Gaps = 2/111 (1%)
Query: 1 FEKYISGKYLGELVRVVLCRLVRDGLLFNGVSSEDLVTPNAFRTSFVSLIEQDSVDGLTH 60
FEK ISG YLG++VR V+ R+ ++ +F VSS L TP RT V+ + +D L
Sbjct: 314 FEKMISGMYLGDIVRRVILRMSQESDIFGPVSSR-LSTPFVLRTPSVAAMHEDDSPELQE 372
Query: 61 YTEKVLDDLGLTYNDDDIL-IVQRVCHLLSLRATLLVSICTAVLVRRIDRD 110
+ + LG++ + +V ++C +++ RA L + ++++I RD
Sbjct: 373 VARILKETLGISEVPLKVRKLVVKICDVVTRRAARLAAAGIVGILKKIGRD 423
Score = 34.9 bits (80), Expect = 0.018
Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 136 ISGKYLGELVRVVLCRLVRDGLLFNGVSSEDLVTPNAFRTSFVS 179
ISG YLG++VR V+ R+ ++ +F VSS L TP RT V+
Sbjct: 318 ISGMYLGDIVRRVILRMSQESDIFGPVSSR-LSTPFVLRTPSVA 360
>gnl|CDD|215226 PLN02405, PLN02405, hexokinase.
Length = 497
Score = 50.6 bits (121), Expect = 8e-08
Identities = 30/113 (26%), Positives = 54/113 (47%), Gaps = 1/113 (0%)
Query: 1 FEKYISGKYLGELVRVVLCRLVRDGLLFNGVSSEDLVTPNAFRTSFVSLIEQDSVDGLTH 60
FEK ISG YLGE++R VL ++ + F L P RT +S + D+ L
Sbjct: 314 FEKIISGMYLGEILRRVLLKMAEEAAFFGDTVPPKLKIPFILRTPDMSAMHHDTSPDLKV 373
Query: 61 YTEKVLDDLGLTYNDDDIL-IVQRVCHLLSLRATLLVSICTAVLVRRIDRDDI 112
K+ D L + + +V +C++++ R L + +++++ RD +
Sbjct: 374 VGSKLKDILEIPNTSLKMRKVVVELCNIVATRGARLSAAGIYGILKKLGRDTV 426
Score = 38.3 bits (89), Expect = 0.001
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 124 GRQLFNSEVFYYISGKYLGELVRVVLCRLVRDGLLFNGVSSEDLVTPNAFRTSFVS 179
G Q+F ISG YLGE++R VL ++ + F L P RT +S
Sbjct: 310 GEQIFEK----IISGMYLGEILRRVLLKMAEEAAFFGDTVPPKLKIPFILRTPDMS 361
>gnl|CDD|178206 PLN02596, PLN02596, hexokinase-like.
Length = 490
Score = 49.9 bits (119), Expect = 2e-07
Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 5/112 (4%)
Query: 1 FEKYISGKYLGELVRVVLCRLVRDGLLFNGVSSEDLVTPNAFRTSFVSLIEQDSVDGLTH 60
FEK SG YLGE+VR VL ++ + LF L TP R+ ++ + QD+ +
Sbjct: 314 FEKLTSGMYLGEIVRRVLLKMAEETALFGDTLPPKLTTPYLLRSPDMAAMHQDTSEDHEV 373
Query: 61 YTEKVLDDLGLTYNDDDIL---IVQRVCHLLSLRATLLVSICTAVLVRRIDR 109
EK+ + G+T D + +V VC +++ R L +++++ R
Sbjct: 374 VNEKLKEIFGIT--DSTPMAREVVAEVCDIVAERGARLAGAGIVGIIKKLGR 423
Score = 34.9 bits (80), Expect = 0.019
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 136 ISGKYLGELVRVVLCRLVRDGLLFNGVSSEDLVTPNAFRT 175
SG YLGE+VR VL ++ + LF L TP R+
Sbjct: 318 TSGMYLGEIVRRVLLKMAEETALFGDTLPPKLTTPYLLRS 357
>gnl|CDD|150344 pfam09646, Gp37, Gp37 protein. This protein of 154 residues
consists of a unit of helices and beta sheets that
crystallises into a beautiful asymmetrical dodecameric
barrel-structure, of two six-membered rings one on top
of the other. It is expressed in bacteria but is of
viral origin as it is found in phage BcepMu and is
probably a pathogenesis factor.
Length = 144
Score = 29.6 bits (67), Expect = 0.52
Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 95 LVSICTAVLVRRIDRDDITIAV-DRIRQ-MCGRQLFNSEVFYYISGKYLGE 143
V + VL+R+++ DD +AV DR+R+ + G + + + +S K+LGE
Sbjct: 56 TVQLAVTVLLRQLNGDDGALAVLDRVRRALVGFRPPDCRKCWLVSEKFLGE 106
>gnl|CDD|240015 cd04657, Piwi_ago-like, Piwi_ago-like: PIWI domain, Argonaute-like
subfamily. Argonaute is the central component of the
RNA-induced silencing complex (RISC) and related
complexes. The PIWI domain is the C-terminal portion of
Argonaute and consists of two subdomains, one of which
provides the 5' anchoring of the guide RNA and the
other, the catalytic site for slicing.
Length = 426
Score = 28.7 bits (65), Expect = 1.9
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 11/48 (22%)
Query: 59 THYTEKVL-DDLGLTYNDDDILIVQRVCHLLSL---RATLLVSICTAV 102
THY VL D++G T D+ +Q + + L R T VSI
Sbjct: 372 THYH--VLWDEIGFT--ADE---LQTLTYNLCYTYARCTRSVSIPPPA 412
>gnl|CDD|218680 pfam05664, DUF810, Protein of unknown function (DUF810). This
family consists of several plant proteins of unknown
function.
Length = 677
Score = 27.5 bits (61), Expect = 4.9
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 17/76 (22%)
Query: 61 YTEKVLDDLGLTYNDDDILIVQRVCHLLSLRATLLVSICTAVLVRRIDRDDITIAVDRIR 120
++EK L D T+++ +I +++ +VSI A RI +DI+ + R R
Sbjct: 331 WSEKRLLDYHDTFDEGNIGVME-----------DIVSI--AYSAARILGEDISAELRRAR 377
Query: 121 QMCGRQLFNSEVFYYI 136
+ C R + YI
Sbjct: 378 KTCAR----DRIDEYI 389
>gnl|CDD|224440 COG1523, PulA, Type II secretory pathway, pullulanase PulA and
related glycosidases [Carbohydrate transport and
metabolism].
Length = 697
Score = 27.3 bits (61), Expect = 4.9
Identities = 14/50 (28%), Positives = 19/50 (38%), Gaps = 14/50 (28%)
Query: 39 PNAFRTSFVSLIEQDSVD-----GLTH---------YTEKVLDDLGLTYN 74
P R +++ L E +D G+T Y E LD GL N
Sbjct: 190 PEELRGTYLGLAEPVIIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNN 239
>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like.
Length = 560
Score = 27.1 bits (60), Expect = 5.6
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 75 DDDILIVQRVCHL--LSLRATLLVSICTAVLV-RRIDRDDITIAVDRIR 120
D+ L + H+ LSL L+S+ + ++V RR D D+ +DR +
Sbjct: 244 DNVYLAALPMFHIYGLSLFVVGLLSLGSTIVVMRRFDASDMVKVIDRFK 292
>gnl|CDD|232995 TIGR00487, IF-2, translation initiation factor IF-2. This model
discriminates eubacterial (and mitochondrial)
translation initiation factor 2 (IF-2), encoded by the
infB gene in bacteria, from similar proteins in the
Archaea and Eukaryotes. In the bacteria and in
organelles, the initiator tRNA is charged with
N-formyl-Met instead of Met. This translation factor
acts in delivering the initator tRNA to the ribosome. It
is one of a number of GTP-binding translation factors
recognized by the pfam model GTP_EFTU [Protein
synthesis, Translation factors].
Length = 587
Score = 27.0 bits (60), Expect = 5.8
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 125 RQLFNSEVFYYISGKYL--GELVRVVLCRLVRDGL-LFNG 161
RQ+FN I+G Y+ G + R R++RDG+ +F G
Sbjct: 498 RQVFNVPKIGNIAGCYVTEGVIKRGNPLRVIRDGVVIFEG 537
>gnl|CDD|238151 cd00247, Endostatin-like, Endostatin-like domain; the angiogenesis
inhibitor endostatin is a C-terminal fragment of
collagen XV/XVIII, a proteoglycan/collagen found in
vessel walls and basement membranes; this domain has a
compact globular fold similar to that of C-type lectins;
endostatin XVIII is monomeric and contains a
heparin-binding epitope and zinc binding sites while
endostatin XV is trimeric and contains neither of these
sites; the generation of endostatin or endostatin-like
collagen XV/XVIII fragments is catalyzed by proteolytic
enzymes within the protease-sensitive hinge region of
the C-terminal domain; endostatin inhibits endothelial
cell migration in vitro and appears to be highly
effective in murine in vivo studies.
Length = 171
Score = 26.5 bits (59), Expect = 6.3
Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 11/61 (18%)
Query: 88 LSLRATLLVSICTAVLVRRIDRDDITIAVDRIRQMCGRQLFNS-EVFYYISGKYLGELVR 146
LS R L SI VRR DRD + I + G LFNS E + SG R
Sbjct: 44 LSSRLQDLYSI-----VRRADRDSLPIVNLK-----GEVLFNSWESLFSGSGGQFNPGAR 93
Query: 147 V 147
+
Sbjct: 94 I 94
>gnl|CDD|133038 cd04195, GT2_AmsE_like, GT2_AmsE_like is involved in
exopolysaccharide amylovora biosynthesis. AmsE is a
glycosyltransferase involved in exopolysaccharide
amylovora biosynthesis in Erwinia amylovora. Amylovara
is one of the three exopolysaccharide produced by E.
amylovora. Amylovara-deficient mutants are
non-pathogenic. It is a subfamily of Glycosyltransferase
Family GT2, which includes diverse families of
glycosyltransferases with a common GT-A type structural
fold, which has two tightly associated beta/alpha/beta
domains that tend to form a continuous central sheet of
at least eight beta-strands. These are enzymes that
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds.
Length = 201
Score = 26.5 bits (59), Expect = 7.7
Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 11/85 (12%)
Query: 39 PNAFRTSFVSLIEQ----DSV----DG-LTHYTEKVLDDLGLTYNDDDILIVQRVCHLLS 89
P R + S+++Q D V DG +T +VL++ + + + +
Sbjct: 12 PEFLREALESILKQTLPPDEVVLVKDGPVTQSLNEVLEEFKRKLPLKVVPLEKNRGLGKA 71
Query: 90 LRATLLVSICTAVLVRRIDRDDITI 114
L L CT V R+D DDI++
Sbjct: 72 LNEGLKH--CTYDWVARMDTDDISL 94
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.327 0.144 0.413
Gapped
Lambda K H
0.267 0.0756 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,508,927
Number of extensions: 913130
Number of successful extensions: 1077
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1071
Number of HSP's successfully gapped: 35
Length of query: 182
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 91
Effective length of database: 6,901,388
Effective search space: 628026308
Effective search space used: 628026308
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 56 (25.3 bits)