RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13609
(182 letters)
>3o8m_A Hexokinase; rnaseh-like fold, glycolysis, glucose repression
binding, MIG1 binding, transferase; HET: GLC BGC; 1.42A
{Kluyveromyces lactis} PDB: 3o1b_A 3o08_A* 3o1w_A*
3o5b_A* 3o4w_A 3o80_A* 3o6w_A* 1ig8_A 3b8a_X*
Length = 485
Score = 114 bits (287), Expect = 1e-30
Identities = 31/117 (26%), Positives = 50/117 (42%)
Query: 1 FEKYISGKYLGELVRVVLCRLVRDGLLFNGVSSEDLVTPNAFRTSFVSLIEQDSVDGLTH 60
FEK SG YLGE++R+VL L G +F L TS+ S IE D + L
Sbjct: 300 FEKMTSGYYLGEIMRLVLLDLYDSGFIFKDQDISKLKEAYVMDTSYPSKIEDDPFENLED 359
Query: 61 YTEKVLDDLGLTYNDDDILIVQRVCHLLSLRATLLVSICTAVLVRRIDRDDITIAVD 117
+ +L + + +++++ L+ RA L + + + IA D
Sbjct: 360 TDDLFKTNLNIETTVVERKLIRKLAELVGTRAARLTVCGVSAICDKRGYKTAHIAAD 416
Score = 65.8 bits (160), Expect = 3e-13
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Query: 114 IAVDRIRQMCGRQLFNSEVFYYISGKYLGELVRVVLCRLVRDGLLFNGVSSEDLVTPNAF 173
+ +D G+Q F SG YLGE++R+VL L G +F L
Sbjct: 286 VIIDEESPRPGQQAFE----KMTSGYYLGEIMRLVLLDLYDSGFIFKDQDISKLKEAYVM 341
Query: 174 RTSFVSLIE 182
TS+ S IE
Sbjct: 342 DTSYPSKIE 350
>1bdg_A Hexokinase; phosphotransferase; HET: GLC; 2.60A {Schistosoma
mansoni} SCOP: c.55.1.3 c.55.1.3
Length = 451
Score = 111 bits (279), Expect = 2e-29
Identities = 41/118 (34%), Positives = 64/118 (54%), Gaps = 1/118 (0%)
Query: 1 FEKYISGKYLGELVRVVLCRLVRDGLLFNGVSSEDLVTPNAFRTSFVSLIEQDSVDGLTH 60
+EK +SG YLGELVR ++ LV +LF G E L N+ T +++ +E+D L +
Sbjct: 282 YEKMVSGMYLGELVRHIIVYLVEQKILFRGDLPERLKVRNSLLTRYLTDVERDPAHLLYN 341
Query: 61 YTEKVLDDLGL-TYNDDDILIVQRVCHLLSLRATLLVSICTAVLVRRIDRDDITIAVD 117
+ DDL + D IV+ C ++ RA L A ++RRI+R ++T+ VD
Sbjct: 342 THYMLTDDLHVPVVEPIDNRIVRYACEMVVKRAAYLAGAGIACILRRINRSEVTVGVD 399
Score = 65.8 bits (160), Expect = 3e-13
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 114 IAVDRIRQMCGRQLFNSEVFYYISGKYLGELVRVVLCRLVRDGLLFNGVSSEDLVTPNAF 173
++D G+QL+ +SG YLGELVR ++ LV +LF G E L N+
Sbjct: 268 KSMDIDSLHPGKQLYE----KMVSGMYLGELVRHIIVYLVEQKILFRGDLPERLKVRNSL 323
Query: 174 RTSFVSLIE 182
T +++ +E
Sbjct: 324 LTRYLTDVE 332
>3f9m_A Glucokinase; hexokinase IV, ATP-binding, diabetes mellitus,
mutation, glycolysis, nucleotide-binding, transfera;
HET: GLC MRK; 1.50A {Homo sapiens} PDB: 3fgu_A* 3id8_A*
3idh_A* 3vev_A* 3vf6_A* 3qic_A* 3s41_A* 4dhy_A* 4dch_A*
3vey_A* 1v4s_A* 3a0i_X* 3fr0_A* 3goi_A* 3imx_A* 3h1v_X*
1v4t_A*
Length = 470
Score = 106 bits (265), Expect = 2e-27
Identities = 52/123 (42%), Positives = 69/123 (56%), Gaps = 8/123 (6%)
Query: 1 FEKYISGKYLGELVRVVLCRLVRDGLLFNGVSSEDLVTPNAFRTSFVSLIEQDSVDGLTH 60
+EK I GKY+GELVR+VL RLV + LLF+G +SE L T AF T FVS +E D+ D
Sbjct: 294 YEKLIGGKYMGELVRLVLLRLVDENLLFHGEASEQLRTRGAFETRFVSQVESDTGDRKQ- 352
Query: 61 YTEKVLDDLGLTYNDDDILIVQRVCHLLSLRATLLVSICTAVLVRRIDRD------DITI 114
+L LGL + D IV+R C +S RA + S A ++ R+ IT+
Sbjct: 353 -IYNILSTLGLRPSTTDCDIVRRACESVSTRAAHMCSAGLAGVINRMRESRSEDVMRITV 411
Query: 115 AVD 117
VD
Sbjct: 412 GVD 414
Score = 68.2 bits (166), Expect = 5e-14
Identities = 34/69 (49%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 114 IAVDRIRQMCGRQLFNSEVFYYISGKYLGELVRVVLCRLVRDGLLFNGVSSEDLVTPNAF 173
VD G+QL+ I GKY+GELVR+VL RLV + LLF+G +SE L T AF
Sbjct: 280 RLVDESSANPGQQLYE----KLIGGKYMGELVRLVLLRLVDENLLFHGEASEQLRTRGAF 335
Query: 174 RTSFVSLIE 182
T FVS +E
Sbjct: 336 ETRFVSQVE 344
>3hm8_A Hexokinase-3; glucose, glucose-6-phosphate, non-protein kinase,
structural genomics consortium, SGC, A enzyme,
ATP-binding, glycolysis; HET: GLC BG6; 2.80A {Homo
sapiens}
Length = 445
Score = 105 bits (264), Expect = 2e-27
Identities = 48/123 (39%), Positives = 66/123 (53%), Gaps = 8/123 (6%)
Query: 1 FEKYISGKYLGELVRVVLCRLVRDGLLFNGVSSEDLVTPNAFRTSFVSLIEQDSVDGLTH 60
FEK ISG YLGE+VR +L L G+LF G + L T + F+T F+S IE DS+
Sbjct: 270 FEKMISGMYLGEIVRHILLHLTSLGVLFRGQQIQRLQTRDIFKTKFLSEIESDSLALRQ- 328
Query: 61 YTEKVLDDLGLTYNDDDILIVQRVCHLLSLRATLLVSICTAVLVRRIDRD------DITI 114
+L+DLGL DD L+V VC +S RA L A +V +I + +++
Sbjct: 329 -VRAILEDLGLPLTSDDALMVLEVCQAVSQRAAQLCGAGVAAVVEKIRENRGLEELAVSV 387
Query: 115 AVD 117
VD
Sbjct: 388 GVD 390
Score = 64.3 bits (156), Expect = 1e-12
Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Query: 114 IAVDRIRQMCGRQLFNSEVFYYISGKYLGELVRVVLCRLVRDGLLFNGVSSEDLVTPNAF 173
+VD+ G+Q F ISG YLGE+VR +L L G+LF G + L T + F
Sbjct: 256 ASVDQASINPGKQRFE----KMISGMYLGEIVRHILLHLTSLGVLFRGQQIQRLQTRDIF 311
Query: 174 RTSFVSLIE 182
+T F+S IE
Sbjct: 312 KTKFLSEIE 320
>1cza_N Hexokinase type I; structurally homologous domains, transferase;
HET: GLC G6P ADP; 1.90A {Homo sapiens} SCOP: c.55.1.3
c.55.1.3 c.55.1.3 c.55.1.3 PDB: 1dgk_N* 1hkb_A* 1qha_A*
1hkc_A* 1bg3_A* 2nzt_A*
Length = 917
Score = 104 bits (259), Expect = 2e-26
Identities = 45/123 (36%), Positives = 72/123 (58%), Gaps = 8/123 (6%)
Query: 1 FEKYISGKYLGELVRVVLCRLVRDGLLFNGVSSEDLVTPNAFRTSFVSLIEQDSVDGLTH 60
FEK +SG YLGELVR++L ++ ++GLLF G + +L+T F TS VS IE++
Sbjct: 293 FEKMVSGMYLGELVRLILVKMAKEGLLFEGRITPELLTRGKFNTSDVSAIEKNKEGLHN- 351
Query: 61 YTEKVLDDLGLTYNDDDILIVQRVCHLLSLRATLLVSICTAVLVRRIDRDD------ITI 114
+++L LG+ +DDD + VQ VC ++S R+ LV+ ++ R+ + T+
Sbjct: 352 -AKEILTRLGVEPSDDDCVSVQHVCTIVSFRSANLVAATLGAILNRLRDNKGTPRLRTTV 410
Query: 115 AVD 117
VD
Sbjct: 411 GVD 413
Score = 104 bits (259), Expect = 2e-26
Identities = 47/123 (38%), Positives = 64/123 (52%), Gaps = 8/123 (6%)
Query: 1 FEKYISGKYLGELVRVVLCRLVRDGLLFNGVSSEDLVTPNAFRTSFVSLIEQDSVDGLTH 60
+EK ISG YLGE+VR +L + G LF G SE L T F T F+S IE D + L
Sbjct: 741 YEKMISGMYLGEIVRNILIDFTKKGFLFRGQISETLKTRGIFETKFLSQIESDRLALL-- 798
Query: 61 YTEKVLDDLGLTYNDDDILIVQRVCHLLSLRATLLVSICTAVLVRRIDRDD------ITI 114
+L LGL DD ++V+ VC ++S RA L A +V +I + +T+
Sbjct: 799 QVRAILQQLGLNSTCDDSILVKTVCGVVSRRAAQLCGAGMAAVVDKIRENRGLDRLNVTV 858
Query: 115 AVD 117
VD
Sbjct: 859 GVD 861
Score = 66.3 bits (161), Expect = 2e-13
Identities = 28/69 (40%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 114 IAVDRIRQMCGRQLFNSEVFYYISGKYLGELVRVVLCRLVRDGLLFNGVSSEDLVTPNAF 173
VD G+Q + ISG YLGE+VR +L + G LF G SE L T F
Sbjct: 727 RLVDEYSLNAGKQRYE----KMISGMYLGEIVRNILIDFTKKGFLFRGQISETLKTRGIF 782
Query: 174 RTSFVSLIE 182
T F+S IE
Sbjct: 783 ETKFLSQIE 791
Score = 64.4 bits (156), Expect = 1e-12
Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 114 IAVDRIRQMCGRQLFNSEVFYYISGKYLGELVRVVLCRLVRDGLLFNGVSSEDLVTPNAF 173
A+D G+QLF +SG YLGELVR++L ++ ++GLLF G + +L+T F
Sbjct: 279 RAIDAYSLNPGKQLFE----KMVSGMYLGELVRLILVKMAKEGLLFEGRITPELLTRGKF 334
Query: 174 RTSFVSLIE 182
TS VS IE
Sbjct: 335 NTSDVSAIE 343
>2yhx_A Hexokinase B; transferase(phosphoryl,alcohol acceptr); HET: OTG;
2.10A {Saccharomyces cerevisiae} SCOP: i.12.1.1 PDB:
1hkg_A
Length = 457
Score = 89.4 bits (221), Expect = 2e-21
Identities = 23/116 (19%), Positives = 39/116 (33%), Gaps = 1/116 (0%)
Query: 1 FEKYISGKYLGELVRVVLCRLVRDGLLFNGVSSEDLVTPNAFRTSFVSLIEQDSVDGLTH 60
F K K G+ +R VL G + N TS+ + I++ L
Sbjct: 275 FXKNSXAKNXGQSLRDVLMXFKXXGQXHXXXAX-SFXAANVENTSYPAKIQKLPHFDLRX 333
Query: 61 YTEKVLDDLGLTYNDDDILIVQRVCHLLSLRATLLVSICTAVLVRRIDRDDITIAV 116
+ D G+ +V+R L++ A LV + ++ IA
Sbjct: 334 XXDLFXGDQGIAXKTXMKXVVRRXLFLIAAYAFRLVVCXIXAICQKKGYSSGHIAA 389
Score = 43.2 bits (101), Expect = 2e-05
Identities = 10/49 (20%), Positives = 16/49 (32%), Gaps = 1/49 (2%)
Query: 134 YYISGKYLGELVRVVLCRLVRDGLLFNGVSSEDLVTPNAFRTSFVSLIE 182
K G+ +R VL G + N TS+ + I+
Sbjct: 277 KNSXAKNXGQSLRDVLMXFKXXGQXH-XXXAXSFXAANVENTSYPAKIQ 324
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for
structural genomics, JCSG; HET: MSE PLP; 2.10A
{Eubacterium rectale}
Length = 398
Score = 37.2 bits (87), Expect = 0.002
Identities = 9/59 (15%), Positives = 18/59 (30%), Gaps = 13/59 (22%)
Query: 35 DLVTPNAFRTSFVSLIEQDSVDGLTHYT-------------EKVLDDLGLTYNDDDILI 80
+ P + L+ L YT E + + G +N D++ +
Sbjct: 46 SIPAPQIVNDTIKELVTDYDSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYM 104
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.3 bits (86), Expect = 0.002
Identities = 41/293 (13%), Positives = 84/293 (28%), Gaps = 134/293 (45%)
Query: 1 FEKYISGKYLGELVRV---VLCRLVRDGLLFNGVSSE--DLV--------TPNA--FRTS 45
++ Y +G+L++ L L+R L V ++ +++ TP+ +
Sbjct: 177 YQTYHV--LVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSI 234
Query: 46 FVS--LIEQDSVDGLT---HY--TEKVLD----DL-----GLTYNDDDIL---------- 79
+S LI G+ HY T K+L +L G T + ++
Sbjct: 235 PISCPLI------GVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDS 288
Query: 80 ------IVQRVCHLL------SLRATLLVSICTAVL----------------VRRIDRDD 111
V++ +L A S+ ++L + + ++
Sbjct: 289 WESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQ 348
Query: 112 ITIAVDRIRQM--CGRQ----LFNSEVFYYISG--------------------------- 138
+ V++ G+Q L N +SG
Sbjct: 349 VQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIP 408
Query: 139 ---------------------KYLGELVRVVLCRLVRDGLLFNGVSSEDLVTP 170
L ++ LV++ + FN +D+ P
Sbjct: 409 FSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNA---KDIQIP 458
Score = 35.8 bits (82), Expect = 0.006
Identities = 25/167 (14%), Positives = 45/167 (26%), Gaps = 65/167 (38%)
Query: 8 KYLGELVRVVLCRLVRDGLLFNGVSSEDLVTPNAFRTSFVSLIEQDSVDGLTHYTEKVLD 67
L ++ LV++ + FN +D+ P V D
Sbjct: 430 HLLVPASDLINKDLVKNNVSFNA---KDIQIP-------------------------VYD 461
Query: 68 DLGLTYNDDDILIVQRVCHLLSLRATLLVSICTAVLVRRID-----RDDITIAVDRIRQM 122
T++ D+ R L ++ I ++ + + T +D
Sbjct: 462 ----TFDGSDL----R-----VLSGSISERIVDCIIRLPVKWETTTQFKATHILD----- 503
Query: 123 CGRQLFNSEVFYYISGKYLGELVRVVL----CRLVRDGLLFNGVSSE 165
G SG LG L R++ G L +
Sbjct: 504 FGPGG--------ASG--LGVLTHRNKDGTGVRVIVAGTLDINPDDD 540
Score = 28.5 bits (63), Expect = 1.6
Identities = 23/156 (14%), Positives = 53/156 (33%), Gaps = 60/156 (38%)
Query: 10 LGE---LVRV--VL-----CRLVRDGLLFNGVSSEDLVTPNAFRTSFVSLIEQDSVDGLT 59
LGE L + V+ +V + G++ + V + S +I +++
Sbjct: 1764 LGEYAALASLADVMSIESLVEVVF----YRGMTMQVAVPRDELGRSNYGMI---AINP-- 1814
Query: 60 HYTEKVLDDLGLTYNDDDILIVQRVCHLLSLRATLLVSIC-------------------- 99
+ +++ + +Q V + R LV I
Sbjct: 1815 -------GRVAASFSQEA---LQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDT 1864
Query: 100 -TAVL----VRRIDRDDI--TIAVDRIRQMCGRQLF 128
T VL +++ID ++ +++++ + LF
Sbjct: 1865 VTNVLNFIKLQKIDIIELQKSLSLEEVEGH----LF 1896
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.8 bits (66), Expect = 0.57
Identities = 28/182 (15%), Positives = 52/182 (28%), Gaps = 60/182 (32%)
Query: 1 FEKYISGKYLGELVRVVLC------------RLVRDGLLF--------NGVSS--EDLVT 38
F K + ++ + +L + LF V E+++
Sbjct: 29 FVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLR 88
Query: 39 PN-AFRTSFVSLIEQDSVDGLTHYTEKVLDDLGLTYNDDDILI---VQRVCHLLSLRATL 94
N F S + ++ Y E+ D L YND+ + V R+ L LR L
Sbjct: 89 INYKFLMSPIKTEQRQPSMMTRMYIEQR-DRL---YNDNQVFAKYNVSRLQPYLKLRQAL 144
Query: 95 LVSICTAVLVRRIDRDDITIAVDRIRQM--CGRQ--------------LFNSEVFYYISG 138
L R + +D + G+ + ++F+
Sbjct: 145 L-----------ELRPAKNVLID---GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK 190
Query: 139 KY 140
Sbjct: 191 NC 192
>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI
structure initiative, joint center for structural
genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP:
c.67.1.1
Length = 409
Score = 28.7 bits (65), Expect = 0.98
Identities = 7/59 (11%), Positives = 15/59 (25%), Gaps = 18/59 (30%)
Query: 35 DLVTPNAFRTSFVSLIEQDSVDGLTHYT-------------EKVLDDLGLTYNDDDILI 80
DL TP F + +Y+ + +++L+
Sbjct: 54 DLKTPEVFFERIYENKP-----EVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLV 107
>3bhn_A THIJ/PFPI domain protein; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: MSE; 1.76A {Shewanella loihica pv-4}
Length = 236
Score = 28.0 bits (63), Expect = 1.6
Identities = 15/103 (14%), Positives = 33/103 (32%), Gaps = 28/103 (27%)
Query: 26 LLFNGVSSEDLVTP-NAFR-----TSFVSLIEQDSV---DGLTHYTEKVLDDLGLTYNDD 76
+LF+ + D + + L + G+T T+ + ++ +
Sbjct: 26 VLFDDFTDVDFFLMNDLLGRTSDSWTVRILGTKPEHHSQLGMTVKTDGHVSEV----KEQ 81
Query: 77 DILIV-------------QRVCHLLSL--RATLLVSICTAVLV 104
D++++ + L L L+ SIC V
Sbjct: 82 DVVLITSGYRGIPAALQDENFMSALKLDPSRQLIGSICAGSFV 124
>3u24_A Putative lipoprotein; COG4805, DUF885, structural genomics,
PSI-biology, midwest C structural genomics, MCSG, lipid
BIND protein; 2.25A {Shewanella oneidensis}
Length = 572
Score = 27.6 bits (61), Expect = 2.8
Identities = 10/82 (12%), Positives = 27/82 (32%), Gaps = 16/82 (19%)
Query: 55 VDGLTHYTEKVLDDLGLTYNDDDILIVQRVCHLLSLRAT-LLVSI-----------CTAV 102
V+G YTE+++ + G + ++ ++ +L ++ A+
Sbjct: 438 VEGWAVYTERMMLEEGYGNFEPEMWLMYYKWNL--RVICNTILDYSIHVKGMTEEQAIAL 495
Query: 103 LVRR--IDRDDITIAVDRIRQM 122
++ R + R
Sbjct: 496 MMDEAFQQRAEAEGKWRRATLS 517
>2a3l_A AMP deaminase, AMPD; atampd, AT2G38280, adenosine 5'-monophosphate
deaminase, COF 5'-phosphate, structural genomics; HET:
CF5; 3.34A {Arabidopsis thaliana} SCOP: c.1.9.1
Length = 701
Score = 27.3 bits (60), Expect = 3.0
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 1 FEKYISGKYLGELVRVVLCRLVRDGLLF 28
+ I G++LGE+ + V L
Sbjct: 344 QDNLIQGRFLGEITKQVFSDLEASKYQM 371
Score = 26.2 bits (57), Expect = 7.9
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 135 YISGKYLGELVRVVLCRLVRDGLLF 159
I G++LGE+ + V L
Sbjct: 347 LIQGRFLGEITKQVFSDLEASKYQM 371
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo
sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Length = 308
Score = 27.2 bits (60), Expect = 3.4
Identities = 7/18 (38%), Positives = 15/18 (83%)
Query: 46 FVSLIEQDSVDGLTHYTE 63
+VSL+E ++++G+ H +E
Sbjct: 30 YVSLLEYNNIEGMIHLSE 47
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2,
initiation factor 2 alpha subunit, initiation factor 2
beta subunit; 2.80A {Sulfolobus solfataricus} PDB:
2aho_B 3v11_B*
Length = 266
Score = 26.9 bits (59), Expect = 3.8
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 46 FVSLIEQDSVDGLTHYTE 63
+VSL E + ++E
Sbjct: 28 YVSLDEYGGLQAFLPWSE 45
>2z61_A Probable aspartate aminotransferase 2; amino acid
aminotransferase, kynurenine aminotransferase, MJ0684,
cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Length = 370
Score = 27.1 bits (61), Expect = 3.9
Identities = 13/59 (22%), Positives = 19/59 (32%), Gaps = 17/59 (28%)
Query: 35 DLVTPNAFRTSFVSLIEQDSVDGLTHYT-------------EKVLDDLGLTYNDDDILI 80
D TP + ++ +G THYT E D D+I+I
Sbjct: 40 DFNTPKPIVDEGIKSLK----EGKTHYTDSRGILELREKISELYKDKYKADIIPDNIII 94
>3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics,
protein structure initiative; 1.65A {Pseudomonas
syringae PV}
Length = 253
Score = 26.9 bits (60), Expect = 4.0
Identities = 18/105 (17%), Positives = 30/105 (28%), Gaps = 30/105 (28%)
Query: 26 LLFNGVSSEDLVTP-------NAFRTSFVSLIEQDSV---DGLTHYTEKVLDDLGLTYND 75
L++ G++ DLV P + V+ D V GL D
Sbjct: 29 LVYPGMTVMDLVGPHCMFGSLMGAKIYIVAK-SLDPVTSDAGLAIVPTATFGTCP---RD 84
Query: 76 DDILIV-------------QRVCHLL---SLRATLLVSICTAVLV 104
+L + RA + S+C+ L+
Sbjct: 85 LTVLFAPGGTDGTLAAASDAETLAFMADRGARAKYITSVCSGSLI 129
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold,
helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1
b.40.4.5
Length = 182
Score = 26.7 bits (59), Expect = 4.3
Identities = 6/18 (33%), Positives = 14/18 (77%)
Query: 46 FVSLIEQDSVDGLTHYTE 63
+VSL+E ++++G+ +E
Sbjct: 32 YVSLLEYNNIEGMILLSE 49
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha;
transferase, protein biosynthesis, protein synthesis
transferase complex; HET: TPO ANP; 2.50A {Saccharomyces
cerevisiae} PDB: 2a1a_A* 1q46_A
Length = 175
Score = 26.3 bits (58), Expect = 5.3
Identities = 6/18 (33%), Positives = 13/18 (72%)
Query: 46 FVSLIEQDSVDGLTHYTE 63
+V L+E D+++G+ +E
Sbjct: 32 YVKLLEYDNIEGMILLSE 49
>2pnq_A [pyruvate dehydrogenase [lipoamide]]-phosphatase 1; pyruvate
dehydrogenase phosphatase 1, catalytic subunit, PDP1C,
hydrolase; 1.81A {Rattus norvegicus} PDB: 3n3c_A 3mq3_A
Length = 467
Score = 26.7 bits (58), Expect = 5.9
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 10/34 (29%)
Query: 83 RVCHLLSLRATLLVSICTAVLVRRIDRDDITIAV 116
R+ +LSL + R+ RDDITI V
Sbjct: 428 RLSKMLSLPEE----------LARMYRDDITIIV 451
>3mgk_A Intracellular protease/amidase related enzyme (THIJ family);
amidotranferase-like, structural genomics, PSI; 2.00A
{Clostridium acetobutylicum}
Length = 211
Score = 26.0 bits (58), Expect = 7.2
Identities = 18/105 (17%), Positives = 33/105 (31%), Gaps = 31/105 (29%)
Query: 26 LLFNGVSSEDLVTP--------NAFRTSFVSLIEQDSV---DGLTHYTEKVLDDLGLTYN 74
LLFN + D+ P + F +F+S + V + T D
Sbjct: 10 LLFNKFETLDVFGPVEIFGNLQDDFELNFISS-DGGLVESSQKVRVETSLYTRDEN---- 64
Query: 75 DDDILIV------------QRVCHLL---SLRATLLVSICTAVLV 104
+ IL V + + + ++S+CT +
Sbjct: 65 IEKILFVPGGSGTREKVNDDNFINFIGNMVKESKYIISVCTGSAL 109
>3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase,
isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas
fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A
Length = 231
Score = 25.6 bits (57), Expect = 8.6
Identities = 19/104 (18%), Positives = 29/104 (27%), Gaps = 30/104 (28%)
Query: 26 LLFNGVSSEDLVTP-------NAFRTSFVSLIEQDSV---DGLTHYTEKVLDDLGLTYND 75
LLF V DL P + + E V GL D
Sbjct: 11 LLFPEVQQLDLTGPHDVLASLPDVQVHLIWK-EPGPVVASSGLVLQATTSFADCP----P 65
Query: 76 DDILIV------------QRVCHLL---SLRATLLVSICTAVLV 104
D++ + + + + RA + S+ T LV
Sbjct: 66 LDVICIPGGTGVGALMEDPQALAFIRQQAARARYVTSVSTGSLV 109
>1xi9_A Putative transaminase; alanine aminotransferase, southeast
collaboratory for structural genomics, secsg; HET: PLP;
2.33A {Pyrococcus furiosus} SCOP: c.67.1.1
Length = 406
Score = 26.0 bits (58), Expect = 9.2
Identities = 10/54 (18%), Positives = 16/54 (29%), Gaps = 15/54 (27%)
Query: 56 DGLTHYT-------------EKVLDDLGLTYNDDDILIVQRVCHLL--SLRATL 94
+G +Y E+ G+ DD+ + V L A L
Sbjct: 69 EGHNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGALL 122
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.144 0.413
Gapped
Lambda K H
0.267 0.0577 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,846,827
Number of extensions: 172584
Number of successful extensions: 537
Number of sequences better than 10.0: 1
Number of HSP's gapped: 528
Number of HSP's successfully gapped: 43
Length of query: 182
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 94
Effective length of database: 4,244,745
Effective search space: 399006030
Effective search space used: 399006030
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (24.9 bits)