BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1361
(1274 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P09884|DPOLA_HUMAN DNA polymerase alpha catalytic subunit OS=Homo sapiens GN=POLA1 PE=1
SV=2
Length = 1462
Score = 662 bits (1707), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/703 (51%), Positives = 477/703 (67%), Gaps = 39/703 (5%)
Query: 560 IRITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGK--NKKEGEET----G 613
++ITN+ GN++SRTLMGGRSERNEFLLLHAF+E +Y++PDKQ + +K G+E G
Sbjct: 766 LQITNIAGNIMSRTLMGGRSERNEFLLLHAFYENNYIVPDKQIFRKPQQKLGDEDEEIDG 825
Query: 614 EANK-GKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI------ 666
+ NK KGRKKAAY+GGLVL+PK GFYDKFI+L+DFNSLYPSIIQE+NICFTT+
Sbjct: 826 DTNKYKKGRKKAAYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTVQRVASE 885
Query: 667 PVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDI 726
++ +D + + E LP+ ++ GILP EI+KLVE R+QVK LMKQ +L+ DL++QYDI
Sbjct: 886 AQKVTEDGEQEQIPE-LPDPSLEMGILPREIRKLVERRKQVKQLMKQQDLNPDLILQYDI 944
Query: 727 RQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTD 786
RQKALKLTANSMYGCLGF SRF+A+PLAALVT KGREIL++TK +V+ +N EVIYGDTD
Sbjct: 945 RQKALKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREILMHTKEMVQKMNLEVIYGDTD 1004
Query: 787 SLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLS 846
S+MI+ N + + VFK+GN++KSE NKLYK LE+DIDGV+K +LLLKKKKYAAL + S
Sbjct: 1005 SIMINTNSTNLEEVFKLGNKVKSEVNKLYKLLEIDIDGVFKSLLLLKKKKYAALVVEPTS 1064
Query: 847 NGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKI 906
+G + QE+KG+D+VRRDW LA + G FVI QIL +QS D ++NI + + +I
Sbjct: 1065 DGNYVTKQELKGLDIVRRDWCDLAKDTGNFVIGQILSDQSR-----DTIVENIQKRLIEI 1119
Query: 907 RTDLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQGDTISYII 966
++ NG VP++ EI K LTK P++Y D+K+LPHV VAL +N+ +K+K GDT+SY+I
Sbjct: 1120 GENVLNGSVPVSQFEINKALTKDPQDYPDKKSLPHVHVALWINSQGGRKVKAGDTVSYVI 1179
Query: 967 CEDGTSEAATQRAYNIEELKNNSKLKIDVNYYLSQQIHPVVTRLLEPIEGTDAVRIAECL 1026
C+DG++ A+QRAY E+L+ L ID YYL+QQIHPVV R+ EPI+G DAV IA L
Sbjct: 1180 CQDGSNLTASQRAYAPEQLQKQDNLTIDTQYYLAQQIHPVVARICEPIDGIDAVLIATWL 1239
Query: 1027 GLDTSLYRSQIKESIQQSEEN--ILGVGEAE---EVKYQFCDKFEFTCMNPSCKQVNTVE 1081
GLD + +R + EEN +LG G A+ E KY+ C++F+ C P+C N +
Sbjct: 1240 GLDPTQFRVH---HYHKDEENDALLG-GPAQLTDEEKYRDCERFKCPC--PTCGTENIYD 1293
Query: 1082 APTRLSTHGVVFVLDECINPECKVPPYTYLPHLINKLSQDMNKYIVKYYEGWLKCEDPGC 1141
S + L C N +CK P T+ L NKL D+ ++I KYY+GWL CE+P C
Sbjct: 1294 NVFDGSGTDMEPSLYRCSNIDCKASPLTFTVQLSNKLIMDIRRFIKKYYDGWLICEEPTC 1353
Query: 1142 SDLTRRCPLGLKTR--LCTTCHKYKLHRVYTELQLYQQLSFFHYICDITKALTKSDTPSI 1199
+ TR PL LC C K L Y++ LY QL F+ YI D AL K T
Sbjct: 1354 RNRTRHLPLQFSRTGPLCPACMKATLQPEYSDKSLYTQLCFYRYIFDAECALEKLTTDHE 1413
Query: 1200 K-------FDSETYMGYCKMKQHVERFLESSAYNIVDLKKLFS 1235
K F + Y K+K E+FL S Y+ V+L KLF+
Sbjct: 1414 KDKLKKQFFTPKVLQDYRKLKNTAEQFLSRSGYSEVNLSKLFA 1456
Score = 268 bits (686), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 205/582 (35%), Positives = 305/582 (52%), Gaps = 61/582 (10%)
Query: 46 RAKRQKIDKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDW 105
RA+R+K K + A ++LK K G K+KYE VYEEV E++Y++ V RQ+DDW
Sbjct: 20 RARREKKSKKGRQEALERLKKAKA-GEKYKYEVEDFTGVYEEVDEEQYSKLVQARQDDDW 78
Query: 106 IDDDGGDGYVEDGREIFDDDIEDVPQKKEKHDKRKKNKNIQNPNAK-------GDIQKLL 158
I DD G GYVEDGREIFDDD+ED ++ K K +N N K +I+ +
Sbjct: 79 IVDDDGIGYVEDGREIFDDDLEDDALDADEKGKDGKARNKDKRNVKKLAVTKPNNIKSMF 138
Query: 159 ANMPVKKKKKEEVQLNNDDVLADLLSEVNTTIAPTLKLNTKTNEIVIPKEEPPAPTAKEY 218
KK + V L+ D +L D+L ++NT P + T +++ K+ + +
Sbjct: 139 IACAGKKTADKAVDLSKDGLLGDILQDLNTE-TPQI---TPPPVMILKKKRSIGASPNPF 194
Query: 219 LANFSKPIKVEKKIEKPIKKE-----PSPLKDEIKSNDSVMEVEMNVAEQSKEEPVDDGL 273
+ + + KI P+ ++ P PLK + D +V +S EE + G
Sbjct: 195 SVHTATAVP-SGKIASPVSRKEPPLTPVPLKRAEFAGD-------DVQVESTEEEQESGA 246
Query: 274 WEQMQIDDWDNSQQTQDV-LPEQAKVELQIEAIESQSIEEKVDVTNVESVSSAVELSTSP 332
E + D+D + ++V L A E+ ++ ++++ D S V S
Sbjct: 247 ME-FEDGDFDEPMEVEEVDLEPMAAKAWDKESEPAEEVKQEAD-----SGKGTVSYLGSF 300
Query: 333 PPQVVEKKEHKCAEWEAIQ---TEPSTSEPQVHSRTADDSLPLATDHENKKVFRMFFLDA 389
P V C W+ Q + S E QV S LPL + ++VF ++LDA
Sbjct: 301 LPDV------SC--WDIDQEGDSSFSVQEVQVDS----SHLPLVKGADEEQVFHFYWLDA 348
Query: 390 FEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHL------KTKEPV 443
+ED Y QPG V+LFGKV+++ +H SCCV+V+NI+R +Y LPR + +T P+
Sbjct: 349 YEDQYNQPGVVFLFGKVWIESAETHVSCCVMVKNIERTLYFLPREMKIDLNTGKETGTPI 408
Query: 444 SIAQVYSEFDQ-IATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPALPSDL 502
S+ VY EFD+ IAT+YKI+ FKS+ +EK YAF +P VP+ SEYLEV+YSA+ P LP DL
Sbjct: 409 SMKDVYEEFDEKIATKYKIMKFKSKPVEKNYAFEIPDVPEKSEYLEVKYSAEMPQLPQDL 468
Query: 503 SGDTFSHVFGTKSSFLENLLLERKIKGPSWLEFPEAEKFPSRISWCKYEVQCNQMEKIRI 562
G+TFSHVFGT +S LE L+ RKIKGP WLE + +SWCK E + + + +
Sbjct: 469 KGETFSHVFGTNTSSLELFLMNRKIKGPCWLEVKSPQLLNQPVSWCKVEAMALKPDLVNV 528
Query: 563 TN-------VCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVL 597
V +T+ ++ +NE + + A S+ L
Sbjct: 529 IKDVSPPPLVVMAFSMKTMQNAKNHQNEIIAMAALVHHSFAL 570
>sp|Q9DE46|DPOLA_XENLA DNA polymerase alpha catalytic subunit OS=Xenopus laevis GN=pola1
PE=2 SV=1
Length = 1458
Score = 659 bits (1701), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/695 (51%), Positives = 464/695 (66%), Gaps = 29/695 (4%)
Query: 560 IRITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKE-----GEETG- 613
++ITN+ GNV+SRTLMGGRSERNE+LLLHAF E ++++PDK K ++ ++ G
Sbjct: 766 LQITNIAGNVMSRTLMGGRSERNEYLLLHAFTENNFIVPDKPVFKKMQQTTVEDNDDMGT 825
Query: 614 EANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI--PVRML 671
+ NK K RKKAAY+GGLVLEPK GFYDKFI+L+DFNSLYPSIIQEYNICFTT+
Sbjct: 826 DQNKNKSRKKAAYAGGLVLEPKVGFYDKFILLLDFNSLYPSIIQEYNICFTTVHREAPST 885
Query: 672 QDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKAL 731
Q + LP ++ GILP EI+KLVE RR VK LMKQP+L+ DL +QYDIRQKAL
Sbjct: 886 QKGEDQDEIPELPHSDLEMGILPREIRKLVERRRHVKQLMKQPDLNPDLYLQYDIRQKAL 945
Query: 732 KLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMIS 791
KLTANSMYGCLGF SRF+A+PLAALVT +GREILL+TK +V+ +N EVIYGDTDS+MI+
Sbjct: 946 KLTANSMYGCLGFSYSRFYAKPLAALVTHQGREILLHTKEMVQKMNLEVIYGDTDSIMIN 1005
Query: 792 CNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMI 851
N N+ + VFK+GN++KSE NK YK LE+DIDG++K +LLLKKKKYAAL++ +GK +
Sbjct: 1006 TNCNNLEEVFKLGNRVKSEINKSYKLLEIDIDGIFKSLLLLKKKKYAALTVEPTGDGKYV 1065
Query: 852 CSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLD 911
QE+KG+D+VRRDW +LA +AG +VISQIL +Q D ++NI + + +I ++
Sbjct: 1066 TKQELKGLDIVRRDWCELAKQAGNYVISQILSDQPR-----DSIVENIQKKLTEIGENVT 1120
Query: 912 NGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQGDTISYIICEDGT 971
NG VP+T EI K LTK P++Y D+K+LPHV VAL +N+ +K+K GDTISY+IC+DG+
Sbjct: 1121 NGTVPITQYEINKALTKDPQDYPDKKSLPHVHVALWINSQGGRKVKAGDTISYVICQDGS 1180
Query: 972 SEAATQRAYNIEELKNNSKLKIDVNYYLSQQIHPVVTRLLEPIEGTDAVRIAECLGLDTS 1031
+ +A+QRAY E+L+ L ID YYLSQQ+HPVV R+ EPI+G D+ IA LGLD S
Sbjct: 1181 NLSASQRAYAQEQLQKQENLSIDTQYYLSQQVHPVVARICEPIDGIDSALIAMWLGLDPS 1240
Query: 1032 LYRSQIKESIQQSEENILGVGE----AEEVKYQFCDKFEFTCMNPSCKQVNTVEAPTRLS 1087
+R+ QQ EEN +G +E KY+ C++F+F C P C N + S
Sbjct: 1241 QFRAH--RHYQQDEENDALLGGPSQLTDEEKYRDCERFKFFC--PKCGTENIYDNVFDGS 1296
Query: 1088 THGVVFVLDECINPECKVPPYTYLPHLINKLSQDMNKYIVKYYEGWLKCEDPGCSDLTRR 1147
+ L C PEC P Y+ + NKL D+ +YI KYY GWL CE+ C + TRR
Sbjct: 1297 GLQIEPGLKRCSKPECDASPLDYVIQVHNKLLLDIRRYIKKYYSGWLVCEEKTCQNRTRR 1356
Query: 1148 CPLGLKTR--LCTTCHKYKLHRVYTELQLYQQLSFFHYICDITKALTKSDTPS------I 1199
PL +C C K L Y E LY QL F+ +I D AL K +
Sbjct: 1357 LPLSFSRNGPICQACSKATLRSEYPEKALYTQLCFYRFIFDWDYALEKVVSEQERGHLKK 1416
Query: 1200 KFDSETYMGYCKMKQHVERFLESSAYNIVDLKKLF 1234
K E+ Y K+K V++ L S Y+ V+L KLF
Sbjct: 1417 KLFQESENQYKKLKSTVDQVLSRSGYSEVNLSKLF 1451
Score = 288 bits (736), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 219/594 (36%), Positives = 321/594 (54%), Gaps = 72/594 (12%)
Query: 44 GGRAKRQKIDKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQED 103
R++R+K +K+ + A ++LK K G K KYE ++YEEV E EY++ V RQ+D
Sbjct: 9 ASRSRREKTEKSGRKEALERLKRAKA-GEKVKYEVEQVSSIYEEVDEAEYSKLVRDRQDD 67
Query: 104 DWIDDDGGDGYVEDGREIFDDDIEDVP-------QKKEKHDKRK-KNKNIQNPNAKGDIQ 155
DWI DD G GYVEDGREIFDDD+ED K DK K ++ PN +I+
Sbjct: 68 DWIVDDDGTGYVEDGREIFDDDLEDNALADSGKGAKGAPKDKTNVKKSSVSKPN---NIK 124
Query: 156 KLLANMPVKKKKKEEVQLNNDDVLADLLS-----EVNTTIAPTLKLNTK------TNEIV 204
+ VKK + V L+ DD+L DLL V T P + L K N
Sbjct: 125 SMFMASAVKKTTDKAVDLSKDDLLGDLLQDLKSQAVPITPPPVITLKKKKLAGSPLNPFS 184
Query: 205 IPKEEPPA-PTAKEYLANFSKP----IKVEKKIEKPIKKEPSPLKDEIKSNDSVMEVEMN 259
+P P PT+ + L +KP + + + + IKKEP + I S ++VE
Sbjct: 185 VPPTAPKVLPTSVKRLPAVTKPGHPAAQSKASVPRQIKKEPK--AELISSAVGPLKVEAQ 242
Query: 260 VAEQ-SKEEPVDDGLWEQMQIDDWDNSQQTQDVLPEQAKVELQIEAIESQSIEEKVDVTN 318
V E+ S DDG +++ +D + + + QA+ I+ ++ ++I+E+
Sbjct: 243 VKEEDSGMVEFDDGDFDEPMEEDVEITPVDSSTIKTQAQ---SIKCVKEENIKEEKS--- 296
Query: 319 VESVSSAVELSTSPPPQVVEKKEHKCAEWEAI-QTEPSTSEPQVHSRTADDSLPLATDHE 377
S ++ L+ S C W+ I + EP T+E QV S LPL T +
Sbjct: 297 --SFITSATLNES------------C--WDQIDEAEPMTTEIQVDS----SHLPLVTGAD 336
Query: 378 NKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHL 437
+VFR ++LDA+ED Y QPG VYLFGKV+++ +++ SCCV V+NI+R +YLLPR +
Sbjct: 337 GSQVFRFYWLDAYEDQYSQPGVVYLFGKVWIESADAYVSCCVSVKNIERTVYLLPRENRV 396
Query: 438 K------TKEPVSIAQVYSEFDQ-IATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVR 490
+ T PVS+ VY EF++ +A +YKI+ FKS+K++K YAF +P VP SEYLEVR
Sbjct: 397 QLSTGKDTGAPVSMMHVYQEFNEAVAEKYKIMKFKSKKVDKDYAFEIPDVPASSEYLEVR 456
Query: 491 YSAKCPALPSDLSGDTFSHVFGTKSSFLENLLLERKIKGPSWLEFPEAEKFPSRISWCKY 550
YSA P LP DL G+TFSHVFGT +S LE LL RKIKGPSWLE + +SWCK
Sbjct: 457 YSADSPQLPQDLKGETFSHVFGTNTSSLELFLLSRKIKGPSWLEIKSPQLSSQPMSWCKV 516
Query: 551 EVQCNQMEKIRITN-------VCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVL 597
E + +++ + V ++ +T+ ++ +NE + + A ++ L
Sbjct: 517 EAVVTRPDQVSVVKDLAPPPVVVLSLSMKTVQNAKTHQNEIVAIAALVHHTFPL 570
>sp|P33609|DPOLA_MOUSE DNA polymerase alpha catalytic subunit OS=Mus musculus GN=Pola1 PE=1
SV=2
Length = 1465
Score = 656 bits (1693), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/700 (51%), Positives = 476/700 (68%), Gaps = 34/700 (4%)
Query: 560 IRITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGK--NKKEGEET----G 613
++ITN+ GN++SRTLMGGRSERNEFLLLHAF+E +Y++PDKQ + +K G+E G
Sbjct: 770 LQITNIAGNIMSRTLMGGRSERNEFLLLHAFYENNYIVPDKQIFRKPQQKLGDEDEEIDG 829
Query: 614 EANK-GKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPV---- 668
+ NK KGRKKA Y+GGLVL+PK GFYDKFI+L+DFNSLYPSIIQE+NICFTT+
Sbjct: 830 DTNKYKKGRKKATYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTVQRVTSE 889
Query: 669 --RMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDI 726
+ +D + + E LP+ ++ GILP EI+KLVE R+QVK LMKQ +L+ DL++QYDI
Sbjct: 890 VQKATEDEEQEQIPE-LPDPNLEMGILPREIRKLVERRKQVKQLMKQQDLNPDLVLQYDI 948
Query: 727 RQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTD 786
RQKALKLTANSMYGCLGF SRF+A+PLAALVT KGREIL++TK +V+ +N EVIYGDTD
Sbjct: 949 RQKALKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREILMHTKDMVQKMNLEVIYGDTD 1008
Query: 787 SLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLS 846
S+MI+ N + + VFK+GN++KSE NKLYK LE+DID V+K +LLLKKKKYAAL + S
Sbjct: 1009 SIMINTNSTNLEEVFKLGNKVKSEVNKLYKLLEIDIDAVFKSLLLLKKKKYAALVVEPTS 1068
Query: 847 NGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKI 906
+G I QE+KG+D+VRRDW LA + G FVI QIL +QS D ++NI + + +I
Sbjct: 1069 DGNYITKQELKGLDIVRRDWCDLAKDTGNFVIGQILSDQSR-----DTIVENIQKRLIEI 1123
Query: 907 RTDLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQGDTISYII 966
++ NG VP++ EI K LTK P++Y DRK+LPHV VAL +N+ +K+K GDT+SY+I
Sbjct: 1124 GENVLNGSVPVSQFEINKALTKDPQDYPDRKSLPHVHVALWINSQGGRKVKAGDTVSYVI 1183
Query: 967 CEDGTSEAATQRAYNIEELKNNSKLKIDVNYYLSQQIHPVVTRLLEPIEGTDAVRIAECL 1026
C+DG++ ATQRAY E+L+ L ID YYL+QQIHPVV R+ EPI+G DAV IA L
Sbjct: 1184 CQDGSNLTATQRAYAPEQLQKLDNLAIDTQYYLAQQIHPVVARICEPIDGIDAVLIALWL 1243
Query: 1027 GLDTSLYRSQIKESIQQSEENILGVGEAE---EVKYQFCDKFEFTCMNPSCKQVNTVEAP 1083
GLD++ +R + + + E + L G A+ E KY+ C+KF+ C+ PSC N +
Sbjct: 1244 GLDSTQFR--VHQYHKDEENDALLGGPAQLTDEEKYKDCEKFK--CLCPSCGTENIYDNV 1299
Query: 1084 TRLSTHGVVFVLDECINPECKVPPYTYLPHLINKLSQDMNKYIVKYYEGWLKCEDPGCSD 1143
S + L C N +CKV P T++ L NKL D+ + I KYY+GWL CE+P C
Sbjct: 1300 FEGSGLDMEPSLYRCSNVDCKVSPLTFMVQLSNKLIMDIRRCIKKYYDGWLICEEPTCCS 1359
Query: 1144 LTRRCPLGLKTR--LCTTCHKYKLHRVYTELQLYQQLSFFHYICDITKA---LTKSDTPS 1198
RR PL LC C K L Y++ LY QL F+ YI D A LT+ +
Sbjct: 1360 RLRRLPLHFSRNGPLCPVCMKAVLRPEYSDKSLYTQLCFYRYIFDADCALEKLTEHEKDK 1419
Query: 1199 IK---FDSETYMGYCKMKQHVERFLESSAYNIVDLKKLFS 1235
+K F Y K+K E+FL S Y+ V+L KLF+
Sbjct: 1420 LKKQFFPLRVLQDYRKVKNIAEQFLSWSGYSEVNLSKLFA 1459
Score = 268 bits (686), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 204/589 (34%), Positives = 308/589 (52%), Gaps = 73/589 (12%)
Query: 44 GGRAKRQKIDKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQED 103
RA+R+K K + A ++LK K G K+KYE +VYEEV E++Y++ V RQ+D
Sbjct: 24 ASRARREKKSKKGRQEALERLKKAKA-GEKYKYEVEDLTSVYEEVDEEQYSKLVQARQDD 82
Query: 104 DWIDDDGGDGYVEDGREIFDDDIE-----DVPQKKEKHDKRKKNKNIQNPNAK--GDIQK 156
DWI DD G GYVEDGREIFDDD+E + + RK K+++ P+ +I+
Sbjct: 83 DWIVDDDGIGYVEDGREIFDDDLEDDALDTCGKGSDGKAHRKDRKDVKKPSVTKPNNIKA 142
Query: 157 LLANMPVKKKKKEEVQLNNDDVLADLLSEVNTTIAPTLKLNTKTNEIVIPKEEPPAPTAK 216
+ KK + V L+ DD+L D+L ++NT A ++IPK+ K
Sbjct: 143 MFIASAGKKTTDKAVDLSKDDLLGDILQDLNTETA-----QITPPPVLIPKK-------K 190
Query: 217 EYLANFSKPIKVEKKIEKPIKKEPSPLKDEIKSNDSVMEVEMNVAEQSKEE-----PVDD 271
P V P K SP+ +++ + + + AE + E P D+
Sbjct: 191 RSTGALLNPFSVHTPKAIPSGKPASPV---LRNEPLLTPIPLKRAELAGELAQPECPEDE 247
Query: 272 GLWEQMQIDD--WDNSQQTQDV--LPEQAKVELQ----IEAIESQSIEEKVDVTNVESVS 323
M+ +D +D S T+ V P AK Q +E +E ++ E+ + +E+
Sbjct: 248 QELGVMEFEDGDFDESMDTEKVDEKPVTAKTWDQETEPVERVEHEADPERGTTSYLENFL 307
Query: 324 SAVELSTSPPPQVVEKKEHKCAEWEAIQTEPST-SEPQVHSRTADDSLPLATDHENKKVF 382
V W+ Q + S E QV S +LPL ++++VF
Sbjct: 308 PDVSC------------------WDIDQDDESIPQEVQVDS----SNLPLVKGADDEQVF 345
Query: 383 RMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHL----- 437
+ ++LDA+ED Y QPG V+LFGKV+++ +H SCCV+V+NI+R +Y LPR
Sbjct: 346 QFYWLDAYEDPYNQPGVVFLFGKVWIESVKTHVSCCVMVKNIERTLYFLPREMKFDLNTG 405
Query: 438 -KTKEPVSIAQVYSEFD-QIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKC 495
+T PV++ VY EFD +I+ +YKI+ FKS+ +EK YAF +P VP+ SEYLEVRYSA+
Sbjct: 406 KETAIPVTMKDVYEEFDSKISAKYKIMKFKSKIVEKNYAFEIPDVPEKSEYLEVRYSAEV 465
Query: 496 PALPSDLSGDTFSHVFGTKSSFLENLLLERKIKGPSWLEFPEAEKFPSRISWCKYEVQCN 555
P LP +L G+TFSHVFGT +S LE L+ RKIKGP WLE + ISWCK+EV
Sbjct: 466 PQLPQNLKGETFSHVFGTNTSSLELFLMNRKIKGPCWLEVKNPQLLNQPISWCKFEVMAL 525
Query: 556 QMEKIRITN-------VCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVL 597
+ + + + V + +T+ ++ ++E + + A S+ L
Sbjct: 526 KPDLVNVIKDVSPPPLVVMSFSMKTMQNVQNHQHEIIAMAALVHHSFAL 574
>sp|P26019|DPOLA_DROME DNA polymerase alpha catalytic subunit OS=Drosophila melanogaster
GN=DNApol-alpha180 PE=1 SV=2
Length = 1488
Score = 654 bits (1686), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/708 (49%), Positives = 474/708 (66%), Gaps = 33/708 (4%)
Query: 560 IRITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDK-----QYGKNKKEGEETGE 614
++ITN+CGN ++RTL GGRSERNEFLLLHAFHEK+Y++PDK + G + +G
Sbjct: 788 LQITNICGNTMTRTLQGGRSERNEFLLLHAFHEKNYIVPDKKPVSKRSGAGDTDATLSGA 847
Query: 615 ANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDS 674
+ +KKAAY+GGLVLEP +G Y+K+++LMDFNSLYPSIIQEYNICFTT+ + D
Sbjct: 848 DATMQTKKKAAYAGGLVLEPMRGLYEKYVLLMDFNSLYPSIIQEYNICFTTVQQPVDADE 907
Query: 675 DITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLT 734
T LP+ + + GILP ++K+LVESR++VK LM P+LS +L MQY IRQ ALKLT
Sbjct: 908 LPT-----LPDSKTEPGILPLQLKRLVESRKEVKKLMAAPDLSPELQMQYHIRQMALKLT 962
Query: 735 ANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNV 794
ANSMYGCLGF +SRFFAQ LAALVT KGREIL NT+ LV+ +NY+V+YGDTDSLMI+ N+
Sbjct: 963 ANSMYGCLGFAHSRFFAQHLAALVTHKGREILTNTQQLVQKMNYDVVYGDTDSLMINTNI 1022
Query: 795 NDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQ 854
DYD V+KIG+ IK NKLYKQLELDIDGV+ +LLLKKKKYAA+ +SK S G + Q
Sbjct: 1023 TDYDQVYKIGHNIKQSVNKLYKQLELDIDGVFGCLLLLKKKKYAAIKLSKDSKGNLRREQ 1082
Query: 855 EIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGF 914
E KG+D+VRRDWSQLA GK V+ ++L E+ L+++L +H ++KI+T + G
Sbjct: 1083 EHKGLDIVRRDWSQLAVMVGKAVLDEVLSEK-----PLEEKLDAVHAQLEKIKTQIAEGV 1137
Query: 915 VPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQGDTISYIICEDGTSEA 974
VPL L ITKQLT+ P+EY + +LPHVQVALR+N +++ K+GD + Y+IC DGT+ A
Sbjct: 1138 VPLPLFVITKQLTRTPQEYANSASLPHVQVALRMNRERNRRYKKGDMVDYVICLDGTTNA 1197
Query: 975 ATQRAYNIEELKN--NSKLKIDVNYYLSQQIHPVVTRLLEPIEGTDAVRIAECLGLDTSL 1032
A QRAY+++ELK + KL++D NYYL QIHPVVTR++E +EGTDA RIAECLG+D +
Sbjct: 1198 AMQRAYHLDELKTSEDKKLQLDTNYYLGHQIHPVVTRMVEVLEGTDASRIAECLGMDPTK 1257
Query: 1033 YRSQI----KESIQQSE-ENILGVGEAEEVKYQFCDKFEFTCMNPSCKQVNTVEAPTRLS 1087
+R +E+ +QSE E++L Y+ C+ F F C+ +CK + + R
Sbjct: 1258 FRQNAQRTQRENTEQSEGESLLKTTLQ---LYRLCEPFRFQCV--TCKTEQLMASAYRPG 1312
Query: 1088 -THGVVFVLDECINPECKVPPYTYLPHLINKLSQDMNKYIVKYYEGWLKCEDPGCSDLTR 1146
++ + VL +C EC+ P YL + N+L M +Y+ ++Y+ WL C+ P C+ TR
Sbjct: 1313 PSNSHIAVLQQCAKSECQTAPIQYLASVRNQLQLSMRQYVQRFYKNWLVCDHPDCNFNTR 1372
Query: 1147 RCPLGLKTR--LCTTCHKYKLHRVYTELQLYQQLSFFHYICDITKALTKSDTPSIKFDSE 1204
L K+ LC C L R YTE LY QL + ++ D+ K T P++ E
Sbjct: 1373 THSLRKKSHRPLCQKCRSGSLLRQYTERDLYNQLCYLRFMFDLGKQ-TLQQKPTLT--PE 1429
Query: 1205 TYMGYCKMKQHVERFLESSAYNIVDLKKLFSCEEKQPKLSRGVEREHV 1252
Y + + V++ L+SS+Y I+ L KLF+ Q L V + +
Sbjct: 1430 LEQAYQLLYETVDQQLQSSSYVIISLSKLFARSLAQMSLQPSVAQPQI 1477
Score = 213 bits (543), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 187/627 (29%), Positives = 296/627 (47%), Gaps = 117/627 (18%)
Query: 46 RAKRQKIDKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDW 105
RAKRQ++DK +FAA ++L+ LKG K K E ++VY+ V E+EY +R ++ DDW
Sbjct: 9 RAKRQRVDKNGRFAAMERLRQLKGTKNKCKVE-DQVDDVYDVVDEREYAKRAQEKYGDDW 67
Query: 106 IDDDGGDGYVEDGREIFDDDIEDVPQKKEKHDKRKK-----------NKNIQNPNAKGDI 154
I++DG GY ED R+ F+D+ E ++++ D +KK +N + K I
Sbjct: 68 IEEDGT-GYAEDLRDFFEDEDEYSDGEEDRKDSKKKKGVAPNSKKRPRENEKPVTGKASI 126
Query: 155 QKLLANMPVKKKKKEEVQLNNDDVLADLLSEVNTTIAPTLKLNTKT---NEIVIPKEEPP 211
+ L +N V KK + + +DD+LAD+L E+ A T + K +I + +
Sbjct: 127 KNLFSNA-VPKKMDVKTSVKDDDILADILGEIKEEPAATSEKAEKVIAPAKISVTSRKFD 185
Query: 212 APTAKEYLANFSKPIKVEK----------------KIEKP----------------IKKE 239
A AKEY+ +F IKV++ +I KP IKKE
Sbjct: 186 AAAAKEYMNSFLNNIKVQEQERKKAEASSDNEMLERILKPKAAVPNTKVAFFSSPTIKKE 245
Query: 240 PSPLKDEIKSNDSVMEVEMNVAEQSKEEPVDDGLWEQMQIDDWDN------SQQTQDVLP 293
P P E A+++ E+P D + +DD +N +QQT+ V
Sbjct: 246 PMP--------------EKTPAKKATEDPFSDNEMDFSCLDDDENQFDVEKTQQTEKV-- 289
Query: 294 EQAKVELQIEAIESQSIEEKVDVTNV-ESVSSAVELSTSPPPQVVEKKEHKCAEWEAIQT 352
++++ EK + V E + E + SP E WE+I
Sbjct: 290 -----------SQTKTAAEKTSQSKVAEKSAPKKETTGSPKESESEDISRLLNNWESICQ 338
Query: 353 EPSTSEPQVHSRTADDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENN 412
E V + D ++ ++D + R ++ +A+ED K PG V+LFG+
Sbjct: 339 MDDDFEKSVLTTEQDSTI--SSDQQ----LRFWYWEAYEDPVKMPGEVFLFGRT-----A 387
Query: 413 SHSSCCVIVQNIDRKIYLLPRSEHLK------TKEPVSIAQVYSEFD-QIATQYKILDFK 465
S C+ VQNI+R +YLLPR L TK+ V++A +Y EFD ++A Q K+ F+
Sbjct: 388 DGKSVCLRVQNINRVLYLLPRQFLLDPISKEPTKQKVTVADIYKEFDSEVANQLKLEFFR 447
Query: 466 SRKIEKKYAFNLPG--VPDLSEYLEVRYSAK--CPALPSDLSGDTFSHVFGTKSSFLENL 521
SRK+ K +A + G VP +YLEV Y K P L +D ++ +H+FG ++ LE
Sbjct: 448 SRKVTKSFAHHAIGIEVPQSCDYLEVHYDGKKPLPNLSADKKYNSIAHIFGATTNALERF 507
Query: 522 LLERKIKGPSWLEFPEAEKFPSRISWCKYEVQCNQMEKIRITNVCGNVLS---------- 571
LL+RKIKGP WL+ + P+ +SWC EV + + + + G
Sbjct: 508 LLDRKIKGPCWLQVTGFKVSPTPMSWCNTEVTLTEPKNVELVQDKGKPAPPPPLTLLSLN 567
Query: 572 -RTLMGGRSERNEFLLLHAF-HEKSYV 596
RT M ++ RNE ++ H + ++
Sbjct: 568 VRTSMNPKTSRNEICMISMLTHNRFHI 594
>sp|O89042|DPOLA_RAT DNA polymerase alpha catalytic subunit (Fragment) OS=Rattus
norvegicus GN=Pola1 PE=2 SV=1
Length = 1451
Score = 650 bits (1678), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/689 (51%), Positives = 469/689 (68%), Gaps = 34/689 (4%)
Query: 560 IRITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGK--NKKEGEET----G 613
++ITN+ GN++SRTLMGGRSERNEFLLLHAF+E +Y++PDKQ + +K G+E G
Sbjct: 773 LQITNIAGNIMSRTLMGGRSERNEFLLLHAFYENNYIVPDKQIFRKPQQKPGDEDEEIDG 832
Query: 614 EANK-GKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI------ 666
+ NK KGRKKAAY+GGLVL+PK GFYDKFI+L+DFNSLYPSIIQE+NICFTT+
Sbjct: 833 DTNKYKKGRKKAAYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTVQRVASE 892
Query: 667 PVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDI 726
++ +D + + E LP+ +D GILP EI+KLVE R+QVK LMKQ +L+ DL++QYDI
Sbjct: 893 TLKATEDEEQEQIPE-LPDPNLDMGILPREIRKLVERRKQVKQLMKQQDLNPDLVLQYDI 951
Query: 727 RQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTD 786
RQKALKLTANSMYGCLGF SRF+A+PLAALVT KGREIL++TK +V+ +N EVIYGDTD
Sbjct: 952 RQKALKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREILMHTKEMVQKMNLEVIYGDTD 1011
Query: 787 SLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLS 846
S+MI+ N + + VFK+GN++K+E NKLYK LE+DIDGV+K +LLLKKKKYAAL + S
Sbjct: 1012 SIMINTNSTNLEEVFKLGNKVKNEVNKLYKLLEIDIDGVFKSLLLLKKKKYAALVVEPTS 1071
Query: 847 NGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKI 906
+G I QE+KG+D+VRRDW LA + G FVI QIL +QS D ++NI + + +I
Sbjct: 1072 DGNYITKQELKGLDIVRRDWCDLAKDTGNFVIGQILSDQSR-----DTIVENIQKRLIEI 1126
Query: 907 RTDLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQGDTISYII 966
++ NG VP++ EI K LTK P++Y D+K+LPHV VAL +N+ +K+K GDT+SY+I
Sbjct: 1127 GENVLNGSVPVSQFEINKALTKDPQDYPDKKSLPHVHVALWINSQGGRKVKAGDTVSYVI 1186
Query: 967 CEDGTSEAATQRAYNIEELKNNSKLKIDVNYYLSQQIHPVVTRLLEPIEGTDAVRIAECL 1026
C+DG++ ATQRAY E+L+ L ID YYL+QQIHPVV R+ EPI+G DAV IA L
Sbjct: 1187 CQDGSNLPATQRAYAPEQLQKQDNLAIDTQYYLAQQIHPVVARICEPIDGIDAVLIALWL 1246
Query: 1027 GLDTSLYRSQIKESIQQSEENILGVGEAE---EVKYQFCDKFEFTCMNPSCKQVNTVEAP 1083
GLD++ +R + + + E + L G A+ E KY+ C+KF+ C+ PSC N +
Sbjct: 1247 GLDSTQFR--VHQYHKDEENDALLGGPAQLTDEEKYKDCEKFK--CLCPSCGTENIYDNV 1302
Query: 1084 TRLSTHGVVFVLDECINPECKVPPYTYLPHLINKLSQDMNKYIVKYYEGWLKCEDPGCSD 1143
S + L+ C N +CK P T++ L NKL D+ + I KYY+GWL CE+P C +
Sbjct: 1303 FEGSGMDMEPSLNRCSNIDCKASPATFMVQLSNKLIMDIRRCIKKYYDGWLICEEPTCRN 1362
Query: 1144 LTRRCPLGLKTR--LCTTCHKYKLHRVYTELQLYQQLSFFHYICDITKALTK---SDTPS 1198
RR PL LC C K L Y++ LY QL F+ YI D AL K +
Sbjct: 1363 RIRRLPLHFSRNGPLCPACMKAVLRPEYSDKSLYTQLCFYRYIFDADCALEKLPEHEKDK 1422
Query: 1199 IK---FDSETYMGYCKMKQHVERFLESSA 1224
+K F Y K+K E FL S
Sbjct: 1423 LKKQFFTPRVLQDYRKVKNIAEHFLSWSG 1451
Score = 267 bits (682), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 203/553 (36%), Positives = 303/553 (54%), Gaps = 66/553 (11%)
Query: 26 TRARSACSSFCVGTQKMEGGRAKRQKIDKTNKFAAFQKLKDLKGQGVKHKYEFTADENVY 85
T A S SF RA+R+K K + A ++LK K G K+KYE +VY
Sbjct: 13 TSAVSDSGSFV-------ASRARREKKSKKGRQEALERLKKAKA-GEKYKYEVEDLTSVY 64
Query: 86 EEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGREIFDDDIED-----VPQKKEKHDKRK 140
EEV E++Y++ V RQ+DDWI DD G GYVEDGREIFDDD+ED + + RK
Sbjct: 65 EEVDEEQYSKLVQARQDDDWIVDDDGIGYVEDGREIFDDDLEDDALDTCGEGSDGKAHRK 124
Query: 141 KNKNIQNPNAK--GDIQKLLANMPVKKKKKEEVQLNNDDVLADLLSEVNT---TIAPTLK 195
K+++ P+ +I+ + KK + V L+ DD+L D+L ++NT IAP
Sbjct: 125 DRKDVKKPSVTKPNNIKAMFIASAGKKTTDKTVDLSKDDLLGDILQDLNTETPQIAPP-- 182
Query: 196 LNTKTNEIVIPKEEPPAPTAKEYLANFSKPIKVEKKIEKPIKKE-----PSPLKDEIKSN 250
++IPK++ + + + KI P+ ++ P PLK
Sbjct: 183 ------PVLIPKKKRSTGASPNPFSVHTATAVPSGKIASPVSRKEPPLTPVPLKR----- 231
Query: 251 DSVMEVEMNVAE-QSKEEPVDDGLWEQMQIDDWDNSQQTQDVLPEQAKVELQIEAIESQS 309
E ++A+ + E+ + G+ E + D+D T++V E+ V +I ES+
Sbjct: 232 ---AEFAGDLAQPECPEDEQESGVIE-FEDGDFDEPMDTEEV-DEEEPVTAKIWDQESEP 286
Query: 310 IEEKVDVTNVESVSSAVELSTSPPPQVVEKKEHKCAEWEAIQTEPST---SEPQVHSRTA 366
+E + E+ +++ S P + C W+ Q + ++ E QV S
Sbjct: 287 VEGVKHEADPETGTTSFLDSFLP--------DVSC--WDIDQKDENSFLLQEVQVDS--- 333
Query: 367 DDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDR 426
+ LPL ++++VF+ ++LDA+ED Y QPG V+LFGKV+V+ +H SCCV+V+NI+R
Sbjct: 334 -NHLPLVKGADDEQVFQFYWLDAYEDPYNQPGVVFLFGKVWVESAKTHVSCCVMVKNIER 392
Query: 427 KIYLLPRSEHL------KTKEPVSIAQVYSEFD-QIATQYKILDFKSRKIEKKYAFNLPG 479
+Y LPR + +T P+++ VY EFD +I+ +YKI+ FKS+ +EK YAF +P
Sbjct: 393 TLYFLPREMKIDLNTGKETATPITMKDVYEEFDSKISAKYKIMKFKSKIVEKNYAFEIPD 452
Query: 480 VPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKSSFLENLLLERKIKGPSWLEFPEAE 539
VP+ SEYLEVRYSA+ P LP +L G+TFSHVFGT +S LE L+ RKIKGP WLE +
Sbjct: 453 VPEKSEYLEVRYSAEVPQLPQNLKGETFSHVFGTNTSSLELFLMNRKIKGPCWLEVKNPQ 512
Query: 540 KFPSRISWCKYEV 552
ISWCK+E
Sbjct: 513 LLNQPISWCKFEA 525
>sp|O48653|DPOLA_ORYSJ DNA polymerase alpha catalytic subunit OS=Oryza sativa subsp.
japonica GN=Os01g0868300 PE=2 SV=2
Length = 1534
Score = 484 bits (1245), Expect = e-135, Method: Compositional matrix adjust.
Identities = 309/741 (41%), Positives = 423/741 (57%), Gaps = 96/741 (12%)
Query: 561 RITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDK-----QYGKNKKEGEETGEA 615
++TN+ GN+ +TL G R++R E+LLLHAFH + +++PDK ++ K++ EA
Sbjct: 818 QLTNISGNLWGKTLQGSRAQRVEYLLLHAFHARKFIVPDKFARSKEFNSTKRKMNPDTEA 877
Query: 616 -----------------NKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQE 658
++GK +K +Y+GGLVLEPKKG YDK+++L+DFNSLYPSIIQE
Sbjct: 878 ARPDEADPSIDDEGHHVDQGKTKKGPSYAGGLVLEPKKGLYDKYVLLLDFNSLYPSIIQE 937
Query: 659 YNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSS 718
YNICFTT+ D LP + TG+LP +K LVE RR VK+ +K S
Sbjct: 938 YNICFTTV------DRSADGNVPNLPASKT-TGVLPELLKSLVERRRMVKSWLK--TASG 988
Query: 719 DLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE-NLN 777
Q+DI+Q+ALKLTANSMYGCLGF NSRF+A+PLA L+T +GREIL NT LV+ NLN
Sbjct: 989 LKRQQFDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITLQGREILQNTVDLVQNNLN 1048
Query: 778 YEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKY 837
EVIYGDTDS+MI ++D I ++ E NK Y+ LE+D+DG+YK MLLLKKKKY
Sbjct: 1049 LEVIYGDTDSIMIHTGLDDISRAKGIAGKVIQEVNKKYRCLEIDLDGIYKRMLLLKKKKY 1108
Query: 838 AALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQ 897
AA+ ++ +G + + E KG+D+VRRDWS L+ E G F ++QIL + S DD ++
Sbjct: 1109 AAIKVAL--DGSLRENIERKGLDMVRRDWSLLSKEIGDFCLNQIL-----SGGSCDDVIE 1161
Query: 898 NIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLK 957
+IH + +++ + G L ITK LTKAPE+Y D K PHVQVALRL
Sbjct: 1162 SIHSSLVQVQEQMRGGQTELEKYIITKSLTKAPEDYPDAKNQPHVQVALRLKQNGYSGCS 1221
Query: 958 QGDTISYIICEDGTSEAA-----TQRAYNIEELKNN-SKLKIDVNYYLSQQIHPVVTRLL 1011
GDT+ YIIC SE+ QRA + EELK N K ID++YYLSQQIHPVV+RL
Sbjct: 1222 AGDTVPYIICSQQDSESTHSGGIAQRARHPEELKRNPDKWMIDIDYYLSQQIHPVVSRLC 1281
Query: 1012 EPIEGTDAVRIAECLGLDTSLYRSQIKESIQQ-SEENILGVGEAEEVKYQFCDKFEFTCM 1070
I+GT R+AECLGLD+S ++S++ ES Q + +L V + E+ +Y+ C+ +C
Sbjct: 1282 ASIQGTSPARLAECLGLDSSKFQSRLTESDNQDTSSMLLSVIDDEDERYRGCEPLRLSC- 1340
Query: 1071 NPSCKQVNTVEAPTRLSTHGVVFVL---------DECIN-------PEC-------KVPP 1107
PSC T + P S D IN P C +V P
Sbjct: 1341 -PSCS--TTFDCPPVSSLIIGSSSGNVSNPNEGNDASINFWRRMRCPRCPDDTDESRVSP 1397
Query: 1108 YTYLPHLINKLSQDMNKYIVKYYEGWLKCEDPGCSDLTRRCPLGL--KTRLCTTCHKY-- 1163
L N++ + + +I YY+G L C+D GC T L + + T C Y
Sbjct: 1398 AV----LANQMKRQADSFINLYYKGLLMCDDEGCKYSTHSVNLRVMGDSERGTICPNYPR 1453
Query: 1164 ---KLHRVYTELQLYQQLSFFHYICDITKALTKSDTPS-IKFDSETYMGYCKMKQ----- 1214
L R YTE LY+QLS+F Y+ D T+ L K D + + F+ E + + Q
Sbjct: 1454 CNGHLVRQYTEADLYRQLSYFCYVVDATRCLEKLDQKARLPFEKE----FAALSQTINLA 1509
Query: 1215 --HVERFLESSAYNIVDLKKL 1233
V++ + A+ V LK L
Sbjct: 1510 LMEVQKIRDRCAFGWVQLKDL 1530
Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/204 (34%), Positives = 106/204 (51%), Gaps = 27/204 (13%)
Query: 384 MFFLDAFEDIY-KQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSE------- 435
+ LDA+E+ + GTVYLFGKV V + SCCV+V+N+ R IY +P S
Sbjct: 356 FYILDAYEEPFGANSGTVYLFGKVEVGKR--FHSCCVVVKNMQRCIYAIPSSSIFPRDTI 413
Query: 436 --------------HLKTKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVP 481
L+ + + SE + + + +F +++ YAF +P
Sbjct: 414 SRLEKNSTTSDSSPSLRASLHELASGLKSEIADKLSDFNVSNFAMTPVKRNYAFERTDLP 473
Query: 482 DLSEY-LEVRYSAKCPALPSDLSGDTFSHVFGTKSSFLENLLLERKIKGPSWLEFPEAEK 540
+ +Y L++ Y K PALP+DL G F + GT +S LE LL++RKIKGPSWL +
Sbjct: 474 NGEQYVLKINYPYKDPALPTDLRGQHFHALLGTNNSALELLLIKRKIKGPSWLSISKFLA 533
Query: 541 FPS--RISWCKYEVQCNQMEKIRI 562
P+ R+SWCK+EV + + I +
Sbjct: 534 CPATQRVSWCKFEVTVDSPKDISV 557
>sp|Q9FHA3|DPOLA_ARATH DNA polymerase alpha catalytic subunit OS=Arabidopsis thaliana
GN=POLA PE=3 SV=2
Length = 1524
Score = 460 bits (1183), Expect = e-128, Method: Compositional matrix adjust.
Identities = 291/696 (41%), Positives = 404/696 (58%), Gaps = 81/696 (11%)
Query: 560 IRITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK------------ 607
+++TN+ GN+ +TL G R++R E+ LLH FH K ++LPDK + K+
Sbjct: 808 LQLTNISGNLWGKTLQGARAQRIEYYLLHTFHSKKFILPDKISQRMKEIKSSKRRMDYAP 867
Query: 608 --------EGEETGEANKGKG---RKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSII 656
+ + T E + KG +K AY+GGLVLEPK+G YDK+++L+DFNSLYPSII
Sbjct: 868 EDRNVDELDADLTLENDPSKGSKTKKGPAYAGGLVLEPKRGLYDKYVLLLDFNSLYPSII 927
Query: 657 QEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNL 716
QEYNICFTTIP +D LP Q GILP ++ LV R+ VK MK+
Sbjct: 928 QEYNICFTTIPRS--EDG-----VPRLPSSQT-PGILPKLMEHLVSIRKSVKLKMKKE-- 977
Query: 717 SSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN- 775
+ + DIRQ+ALKLTANSMYGCLGF NSRF+A+PLA L+T +GR+IL T LV+N
Sbjct: 978 TGLKYWELDIRQQALKLTANSMYGCLGFSNSRFYAKPLAELITLQGRDILQRTVDLVQNH 1037
Query: 776 LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKK 835
LN EVIYGDTDS+MI ++D + V I +++ E NK Y+ L++D DG+YK MLLL+KK
Sbjct: 1038 LNLEVIYGDTDSIMIHSGLDDIEEVKAIKSKVIQEVNKKYRCLKIDCDGIYKRMLLLRKK 1097
Query: 836 KYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDR 895
KYAA+ + + +GK E KGVD+VRRDWS L+ E G +S+IL S +D
Sbjct: 1098 KYAAVKL-QFKDGKPCEDIERKGVDMVRRDWSLLSKEIGDLCLSKIL-----YGGSCEDV 1151
Query: 896 LQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKK 955
++ IH + KI+ ++ NG V L ITK LTK P Y D K+ PHVQVALR+ K+
Sbjct: 1152 VEAIHNELMKIKEEMRNGQVALEKYVITKTLTKPPAAYPDSKSQPHVQVALRMRQRGYKE 1211
Query: 956 -LKQGDTISYIIC-EDGT-----SEAATQRAYNIEELKN-NSKLKIDVNYYLSQQIHPVV 1007
DT+ YIIC E G S +RA + +E+K+ S+ +D++YYL+QQIHPVV
Sbjct: 1212 GFNAKDTVPYIICYEQGNASSASSAGIAERARHPDEVKSEGSRWLVDIDYYLAQQIHPVV 1271
Query: 1008 TRLLEPIEGTDAVRIAECLGLDTSLYRSQIKESIQQSEENILGVGEAEEVKYQFCDKFEF 1067
+RL I+GT R+AECLGLD S YRS+ ++ L ++E +Y+ C+
Sbjct: 1272 SRLCAEIQGTSPERLAECLGLDPSKYRSKSNDATSSDPSTSLLFATSDEERYKSCEPLAL 1331
Query: 1068 TCMNPSCKQ-------VNTVEA--------PTRLSTHGVVFVLDECINPECKVPPYTYL- 1111
TC PSC +++V A P + ++ C P+C+ T +
Sbjct: 1332 TC--PSCSTAFNCPSIISSVCASISKKPATPETEESDSTFWLKLHC--PKCQQEDSTGII 1387
Query: 1112 -PHLI-NKLSQDMNKYIVKYYEGWLKCEDPGCSDLTRRCP----LGLKTRLCTTCHKY-- 1163
P +I N++ + ++ ++ YY+G + CED C TR P LG + R T C Y
Sbjct: 1388 SPAMIANQVKRQIDGFVSMYYKGIMVCEDESCKHTTRS-PNFRLLGERER-GTVCPNYPN 1445
Query: 1164 ---KLHRVYTELQLYQQLSFFHYICDITKALTKSDT 1196
L R YTE LY+QLS+F +I D +L K D
Sbjct: 1446 CNGTLLRKYTEADLYKQLSYFCHILDTQCSLEKMDV 1481
Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 135/587 (22%), Positives = 241/587 (41%), Gaps = 102/587 (17%)
Query: 38 GTQKMEGGRAKRQKIDKTNKFAAFQKLKDLKGQGVKHK----YEFTADENVYEEVSEKEY 93
G E GR + + + +++ ++LK ++ G++ Y+ + +++ V ++EY
Sbjct: 3 GDNSTETGRRRSRGAEASSRKDTLERLKAIRQGGIRSASGGGYDIRLQKPIFDTVDDEEY 62
Query: 94 TERVLKRQED--DWI--DDDGGDGYVEDGREIFDDDIEDVPQKKEKHDKRKK-------- 141
V +R+E+ ++ D +GGD D E D P+ ++ D +
Sbjct: 63 DALVSRRREEARGFVVEDGEGGDLGYLDEGEEEDWSKPSGPESTDESDDGGRFSGRLKKK 122
Query: 142 ---NKNIQNPNAK---------------GDIQKLLANMPVKK-KKKEEVQLNNDDVLADL 182
+ Q P K G + + + KK K+ ++ Q +
Sbjct: 123 KKGKEQTQQPQVKKVNPALKAAATITGEGRLSSMFTSSSFKKVKETDKAQYEG------I 176
Query: 183 LSEVNTTIAPTLKLNTKTNEIVIPKEEPPAPTAKEYLANFSKPIKVEKKIEKPIKKEPSP 242
L E+ + P K +P P + L + + + +++ EP+P
Sbjct: 177 LDEIIAQVTPDESDRKKHTRRKLPGTVPVTIFKNKKLFSVASSMGMKES-------EPTP 229
Query: 243 LKDEIKSNDSV-MEVEMNVAEQSKEEPVDDGLWEQMQIDDWDNSQQTQDVLPEQAKVELQ 301
E DSV M+ E+ E KE V ++ D + + + K EL
Sbjct: 230 STYE---GDSVSMDNELMKEEDMKESEVIPSETMELLGSDIVKEDGSNKIRKTEVKSELG 286
Query: 302 IEAIESQSIEEKVDVTNVESVSSAVELSTSPPPQVVEKKEHKCAEWEAIQTEPSTSEPQV 361
++ E ++ +D+ +S SA A W+ + T +
Sbjct: 287 VK--EVFTLNATIDMKEKDSALSAT------------------AGWKEAMGKVGTENGAL 326
Query: 362 HSRTADDSLPLATDHENKKVFRMFFLDAFEDIYKQP-GTVYLFGKVFVKENNSHSSCCVI 420
+++ D + R F LDA+E+ + GT+YLFGKV K +++ SCCV+
Sbjct: 327 LGSSSEGKTEFDLDADGS--LRFFILDAYEEAFGASMGTIYLFGKV--KMGDTYKSCCVV 382
Query: 421 VQNIDRKIYLLPRSEHLKTKEPVSIAQ----------------------VYSEFDQIATQ 458
V+NI R +Y +P + E + + Q + +E Q Q
Sbjct: 383 VKNIQRCVYAIPNDSIFPSHELIMLEQEVKDSRLSPESFRGKLHEMASKLKNEIAQELLQ 442
Query: 459 YKILDFKSRKIEKKYAFNLPGVPDLSEY-LEVRYSAKCPALPSDLSGDTFSHVFGTKSSF 517
+ +F +++ YAF P VP +Y L++ YS K LP DL G++FS + G+ +S
Sbjct: 443 LNVSNFSMAPVKRNYAFERPDVPAGEQYVLKINYSFKDRPLPEDLKGESFSALLGSHTSA 502
Query: 518 LENLLLERKIKGPSWLEFPE-AEKFPSR-ISWCKYEVQCNQMEKIRI 562
LE+ +L+RKI GP WL+ + PS +SWCK+EV + I I
Sbjct: 503 LEHFILKRKIMGPCWLKISSFSTCSPSEGVSWCKFEVTVQSPKDITI 549
>sp|P28040|DPOA_SCHPO DNA polymerase alpha catalytic subunit OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pol1 PE=1 SV=1
Length = 1405
Score = 432 bits (1111), Expect = e-119, Method: Compositional matrix adjust.
Identities = 271/697 (38%), Positives = 388/697 (55%), Gaps = 40/697 (5%)
Query: 545 ISWCKYEVQCNQMEKIRITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGK 604
I+ +++Q Q+ K +TN+ GN +RTL G R+ERNE++LLH F + Y++PDKQ
Sbjct: 742 IAAVAFKIQMLQLSK-NLTNIAGNSWARTLTGTRAERNEYILLHEFKKNGYIVPDKQQSI 800
Query: 605 NKKE---GEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNI 661
+ G E G + G+KK Y GGLV EP+KG Y+ I++MDFNSLYPSIIQEYNI
Sbjct: 801 RRHAEAFGAEDGLQEESLGKKKDKYKGGLVFEPQKGLYETCILVMDFNSLYPSIIQEYNI 860
Query: 662 CFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLL 721
CFTT+ R +SD P + GI P I LVE RRQ+K L+K + +
Sbjct: 861 CFTTVD-RSPSNSDSDDQIPDTPSASANQGIFPRLIANLVERRRQIKGLLKDNSATPTQR 919
Query: 722 MQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVI 781
+Q+DI+Q+ALKLTANSMYGCLG+ SRF+A+PLA L+T KGRE L+NTK L + + +VI
Sbjct: 920 LQWDIQQQALKLTANSMYGCLGYTKSRFYARPLAVLITYKGREALMNTKELADQMGLQVI 979
Query: 782 YGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALS 841
YGDTDS+M++ NV D + +IGN+ K + N+ Y +LE+DID VY+ MLL KKKYAAL
Sbjct: 980 YGDTDSVMLNTNVTDKNHALRIGNEFKEKVNERYSKLEIDIDNVYQRMLLHAKKKYAALQ 1039
Query: 842 ISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHE 901
+ S GK + ++KG+D+ RR++ LA EA KF + QIL + + ++NIH
Sbjct: 1040 LD--SQGKP--NLDVKGLDMKRREFCTLAKEASKFCLDQILSGE-----LTETVIENIHS 1090
Query: 902 HMKKIRTDLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQGDT 961
++ + NG P I +L K PE+Y + K +P VQVAL+ + ++ GD
Sbjct: 1091 YLMDFSEKMRNGKFPANKFIIFNRLGKNPEDYPNGKTMPFVQVALK-KKARGENVRVGDV 1149
Query: 962 ISYIICEDGTSEAATQRAYNIEELKN-NSKLKIDVNYYLSQQIHPVVTRLLEPIEGTDAV 1020
I +II RAY+ +E+ N NS L ID NYYLS QI P + R++ PIEGT+
Sbjct: 1150 IPFIIAGSDADGHPADRAYSPQEIMNTNSTLVIDYNYYLSHQILPPIERVIAPIEGTNRA 1209
Query: 1021 RIAECLGLDTSLYRSQIKESIQQSEENILGVGEAEEVKYQ-FCDKFEFTCMNPSCKQVNT 1079
R+AECLGLD Y S + SE + E+ Q F + PSC +
Sbjct: 1210 RLAECLGLDARKYYSH-----ETSESSAFQRYESTLTDDQCFINVSPLLLKCPSCNATSF 1264
Query: 1080 VEAPTRLSTHGVVFVLDECINPECKVPPYTYLPH-LINKLSQDMNKYIVKYYEGWLKCED 1138
+ + EC +C Y Y +I + S + +I YYEG L C+D
Sbjct: 1265 SLRSVKSLKETLYANTVEC---DCG---YEYSDFTIILQFSSQLRDFINLYYEGILVCDD 1318
Query: 1139 PGCSDLTRRCPLGLKTRLCTTCHKYKLHRVYTELQLYQQLSFFHYICDITKALTKSDTPS 1198
C + TR+ + K R C + +H Y + QLY Q+ F T T++
Sbjct: 1319 SSCGNRTRQMSVYGK-RCCNKSCRGSVHFEYNDEQLYNQIKFLLKAVQTTTGATRNGI-- 1375
Query: 1199 IKFDSETYMGYCKMKQHVERFLESSAYNIVDLKKLFS 1235
I+ ++ + +++ R + +A VD+ +FS
Sbjct: 1376 IRCNA--------INKNISRIMNKNAREFVDMGLIFS 1404
Score = 161 bits (407), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 153/549 (27%), Positives = 249/549 (45%), Gaps = 50/549 (9%)
Query: 46 RAKRQKIDKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKR-QEDD 104
R + I + +FA + L+ G+ YE +E +Y+ VSE+EY + V +R EDD
Sbjct: 2 RKRNAGIKPSQRFAELRALRQ-AGKTRASTYESKENEELYDNVSEEEYRKIVRQRLDEDD 60
Query: 105 WIDDDGGDGYVEDGREIFD----DDIEDVPQKKEKHDKRKKNKNI-QNPNAK-GDIQKLL 158
++ DD G GYV++G + +D D +D +K KRKK+KN+ PN + G K
Sbjct: 61 FVVDDNGAGYVDNGYDEWDQSHYSDEDDENEKGSSGRKRKKSKNVLAEPNQQIGAFFKAN 120
Query: 159 ANMPVKKKKKEEVQLNNDDVLADLLSEVNTTIAPTLKLNTKTNEIVIPKEEPPAPTAKEY 218
A P + + D+ +A++L ++ I +L+TK AK
Sbjct: 121 AIQPASRIANRKNNEKEDEFMAEILGSIDQDIPE--RLSTKKG-----NRSHTTSNAKRR 173
Query: 219 LANFSKPIKVEKKIEK-PIKKEPSPLKDEIKSNDSVMEVEMNVAEQSKEEPVDDGLWEQM 277
+ I + P K P + + S+ A EE VD + M
Sbjct: 174 SQKAASSISTTNVVSSDPKKYIPETVPSTPQPASSLPIPSSPPAALETEENVDS---QPM 230
Query: 278 QIDDWDNSQQTQDVLP--EQAKVELQIEAIESQSIEEKVDVTNVESVSSAVELSTSPPPQ 335
++D+ + LP A + E+I + + V + S+S A P
Sbjct: 231 ELDEPE--------LPVGSDAPIIDVEESIAMKPLMSHDQVDDTASLSKATISQQPLSPM 282
Query: 336 VVEKKEHKCAEWEAIQTE------PSTSEPQVHSRTADDSLPLATDHENKKVFRMFFLDA 389
E + + I ++ P++S S+ + P E+ +F FF
Sbjct: 283 TPLSSELDVSAFSEINSKIKNVDVPASSYSSPISKVS----PSDVTEEDGSLF--FFWMD 336
Query: 390 FEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKTKEPVSIAQ-- 447
+ ++Y G++ LFGKV+ K + SC + V I R +Y LPR E AQ
Sbjct: 337 YTEMY---GSLCLFGKVYDKATKQYVSCFLKVDGIMRSLYFLPRPSSSSVSEDSIAAQTK 393
Query: 448 -VYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDT 506
VY E + ++ + ++KSR + KYAF L VP ++YLEV YS PALP+DL+G +
Sbjct: 394 DVYDEVANLLSKRGVKEWKSRVSKYKYAFELEDVPRTADYLEVIYSYSYPALPTDLTGSS 453
Query: 507 FSHVFGTKSSFLENLLLERKIKGPSWLEFPEAEKFPS--RISWCKYEVQCNQMEKIRITN 564
FSHVFGT ++ E +L R++ GP WL+ + F + SWC+ E+ C+ + I ++
Sbjct: 454 FSHVFGTNTALFEQFVLSRRVMGPCWLKI-QQPNFDAVKNASWCRVEIGCSSPQNISVSF 512
Query: 565 VCGNVLSRT 573
+ S+T
Sbjct: 513 EKNEITSKT 521
>sp|P13382|DPOA_YEAST DNA polymerase alpha catalytic subunit A OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=POL1 PE=1 SV=2
Length = 1468
Score = 385 bits (990), Expect = e-106, Method: Compositional matrix adjust.
Identities = 245/660 (37%), Positives = 377/660 (57%), Gaps = 45/660 (6%)
Query: 550 YEVQCNQMEKIRITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEG 609
Y +Q + K ++TN+ GN ++TL G R+ RNE++LLH F +++PDK+ +++ +
Sbjct: 766 YRIQLLTLTK-QLTNLAGNAWAQTLGGTRAGRNEYILLHEFSRNGFIVPDKEGNRSRAQK 824
Query: 610 EETGEANKGK--GRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP 667
+ E N KKA Y GGLV EP+KG + ++++MDFNSLYPSIIQE+NICFTT+
Sbjct: 825 QRQNEENADAPVNSKKAKYQGGLVFEPEKGLHKNYVLVMDFNSLYPSIIQEFNICFTTVD 884
Query: 668 VRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIR 727
DI L +P +VD G+LP + LV+ RR+VK +MK +Q DIR
Sbjct: 885 ---RNKEDIDEL-PSVPPSEVDQGVLPRLLANLVDRRREVKKVMKTET-DPHKRVQCDIR 939
Query: 728 QKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDS 787
Q+ALKLTANSMYGCLG+ NSRF+A+PLA LVT KGREIL+NT+ L E++N V+YGDTDS
Sbjct: 940 QQALKLTANSMYGCLGYVNSRFYAKPLAMLVTNKGREILMNTRQLAESMNLLVVYGDTDS 999
Query: 788 LMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSN 847
+MI ++Y KIG K N+ Y+ LE+DID V+K +LL KKKYAAL+++ N
Sbjct: 1000 VMIDTGCDNYADAIKIGLGFKRLVNERYRLLEIDIDNVFKKLLLHAKKKYAALTVNLDKN 1059
Query: 848 GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIR 907
G E+KG+D+ RR++ L+ + V++ IL +D ++ LQ ++++++ IR
Sbjct: 1060 GNGTTVLEVKGLDMKRREFCPLSRDVSIHVLNTIL-----SDKDPEEALQEVYDYLEDIR 1114
Query: 908 TDLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQGDTISYIIC 967
++ + + +I +L+K P+ Y K +P VQVALR+ + +K G I+++I
Sbjct: 1115 IKVETNNIRIDKYKINMKLSKDPKAYPGGKNMPAVQVALRMRKA-GRVVKAGSVITFVIT 1173
Query: 968 E--------DGTSEAATQRAYNIEE--LKNNSKLKIDVNYYLSQQIHPVVTRLLEPIEGT 1017
+ D + + +RA+ + E +K+N+ L D YYL +QI V RLLE I+
Sbjct: 1174 KQDEIDNAADTPALSVAERAHALNEVMIKSNN-LIPDPQYYLEKQIFAPVERLLERIDSF 1232
Query: 1018 DAVRIAECLGLDTSLYRSQIKESIQQSEENILGVGEAEEV-----KYQFCDKFEFTCMNP 1072
+ VR++E LGLD+ Y +E + E+I + E +++ E +C P
Sbjct: 1233 NVVRLSEALGLDSKKYFR--REGGNNNGEDINNLQPLETTITDVERFKDTVTLELSC--P 1288
Query: 1073 SCKQVNTVEAPTRLSTHGVVFVLDECINPECKVPPYTYLPHLINKLSQDMNKYIVKYYEG 1132
SC + + + V + +C + E P L +++ + +I YY G
Sbjct: 1289 SCDKRFPFGGIVSSNYYRVSYNGLQCKHCEQLFTPL----QLTSQIEHSIRAHISLYYAG 1344
Query: 1133 WLKCEDPGCSDLTRRCPLGLKTRL---CTTCHKYKLHRVYTELQLYQQLSFFHYICDITK 1189
WL+C+D C +TR+ + K L CT +YK Y++ QLY QL +F + D K
Sbjct: 1345 WLQCDDSTCGIVTRQVSVFGKRCLNDGCTGVMRYK----YSDKQLYNQLLYFDSLFDCEK 1400
Score = 104 bits (259), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 155/604 (25%), Positives = 258/604 (42%), Gaps = 94/604 (15%)
Query: 54 KTNKFAAFQKLKDLKGQGVKHKYEF--TADENVYEEVSEKEYTERVLKRQE--------- 102
K+ K +KL+ + YE + + +Y+E+ EKEY R KRQE
Sbjct: 4 KSEKLEKLRKLQAARNGTSIDDYEGDESDGDRIYDEIDEKEYRAR--KRQELLHDDFVVD 61
Query: 103 ---DDWIDDDGGDGYVEDGREIFDDDI-EDVPQKKEKHDKRKKNKNIQNPNAKGDIQK-- 156
++D G ED RE+ + ED K KRKKN + + D+ +
Sbjct: 62 DDGVGYVDR----GVEEDWREVDNSSSDEDTGNLASKDSKRKKNIKREKDHQITDMLRTQ 117
Query: 157 -----LLANMPVKKKKKEEVQLNN-DDVLADLLS-EV---NTTIAPTLKLN---TKTNEI 203
LLA+ KK +K+ + ++N DD+L + S EV N + L+ N + T+E
Sbjct: 118 HSKSTLLAH--AKKSQKKSIPIDNFDDILGEFESGEVEKPNILLPSKLRENLNSSPTSEF 175
Query: 204 VIPKEEPPAPTAKEYLANFSKPIKVE--KKIEKPIKKEPSPLKDEIKS-------NDSVM 254
+ + A SK +K++ +K ++ E SPLK + + D +
Sbjct: 176 KSSIKRVNGNDESSHDAGISKKVKIDPDSSTDKYLEIESSPLKLQSRKLRYANDVQDLLD 235
Query: 255 EVEMNVAEQSKEEPVDDGLWEQMQIDDWDNSQQTQDVLPEQAKVELQIEAIESQSIEEKV 314
+VE + +K + V +Q N Q + E+ + + I + V
Sbjct: 236 DVENSPVVATKRQNV-------LQDTLLANPPSAQSLADEEDDEDSDEDIILKRRTMRSV 288
Query: 315 DVTNVESVSSAVELSTSPPPQVVEKKEHKCAEWEAIQTEPSTSEPQVHSRTADDSLPLAT 374
T ++ S STSP A I + T + S T +L +
Sbjct: 289 TTTRRVNIDSRSNPSTSP---------FVTAPGTPIGIKGLTPSKSLQSNTDVATLAVNV 339
Query: 375 DHEN-----KKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIY 429
E+ F+MF+LD E T+ LFGKV +K++N S+ V + + R+++
Sbjct: 340 KKEDVVDPETDTFQMFWLDYCE----VNNTLILFGKVKLKDDNCVSAM-VQINGLCRELF 394
Query: 430 LLPRSEHLKTKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEV 489
LPR + K P I + + +Y + + +++ + KY+F LP +P S+YL+V
Sbjct: 395 FLPR----EGKTPTDIHEEIIPL--LMDKYGLDNIRAKPQKMKYSFELPDIPSESDYLKV 448
Query: 490 RYSAKCP-----ALPSDLSGDTFSHVFGTKSSFLENLLLERKIKGPSWLEFPEAEKFPSR 544
+ P +PSDLS DTF HVFG S+ E+ +++ +I GP WL+ A+ R
Sbjct: 449 LLPYQTPKSSRDTIPSDLSSDTFYHVFGGNSNIFESFVIQNRIMGPCWLDIKGADFNSIR 508
Query: 545 -ISWCKYEVQCNQMEKIRITNV-------CGNVLSRTLMGGRSERNEF--LLLHAFHEKS 594
S C EV ++ + I T C ++ +TLM + + E + L A+ S
Sbjct: 509 NASHCAVEVSVDKPQNITPTTTKTMPNLRCLSLSIQTLMNPKENKQEIVSITLSAYRNIS 568
Query: 595 YVLP 598
P
Sbjct: 569 LDSP 572
>sp|Q94636|DPOLA_OXYNO DNA polymerase alpha catalytic subunit OS=Oxytricha nova PE=3 SV=1
Length = 1492
Score = 385 bits (988), Expect = e-105, Method: Compositional matrix adjust.
Identities = 268/724 (37%), Positives = 401/724 (55%), Gaps = 63/724 (8%)
Query: 561 RITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK--------EGEET 612
++TN+ GN+ R+L R+ERNE LLLH F +K +VLPDK+ K E EE
Sbjct: 767 QLTNIAGNLWFRSLQNARAERNEMLLLHEFKKKKFVLPDKKQLNAKDLKKNMFADEYEEG 826
Query: 613 GEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQ 672
KG RKKAAY+GGLV+EPK GFYD I+L+DFNSLYPSIIQEYN+CFTT+ R +
Sbjct: 827 DGKTKGGKRKKAAYAGGLVIEPKAGFYDNIILLLDFNSLYPSIIQEYNLCFTTVNRRPTK 886
Query: 673 DSDITTL-CEY----------------LPEHQVDT--GILPSEIKKLVESRRQVKALMKQ 713
+ D + + +Y LP+ V+ +LP ++ LV+ R+ VK MK
Sbjct: 887 NFDGSEMKNQYKKGENGEEEVDIEEADLPDKNVNLKDAVLPMVLRDLVQKRKAVKDKMKT 946
Query: 714 PNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLV 773
L Q +IRQKA+KLTANSMYGCLGF +SRF AQ +AAL+T GRE LL TK +
Sbjct: 947 EK-DHVKLSQLEIRQKAIKLTANSMYGCLGFGSSRFHAQAIAALITRTGRETLLRTKDIA 1005
Query: 774 EN-LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLL 832
EN L + V+YGDTDS+MI+ N ++G ++K E N LYK LE++IDGV+K +LLL
Sbjct: 1006 ENKLGFNVVYGDTDSIMINTGSNQLQQALEMGKRLKGEVNCLYKCLEIEIDGVFKSLLLL 1065
Query: 833 KKKKYAALSISK-LSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYS 891
KKKKYAAL LS ++ QE+KG+D+VRRDW L+ G++V+ QIL + +
Sbjct: 1066 KKKKYAALKYENFLSPAEVKVVQEMKGLDMVRRDWCPLSKRVGRYVLDQILSGKQREEVV 1125
Query: 892 LDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNT 951
L N++E + I +L G + L ITKQ+TKA +Y D K PHV VA RL +
Sbjct: 1126 L-----NLNEFLSNIGNELKEGTIKLNEFIITKQITKAISDYNDIKGQPHVAVAKRLRDQ 1180
Query: 952 N-SKKLKQGDTISYIICEDG------TSEAATQRAYNIEE-LKNNSKLKIDVNYYLSQQI 1003
S+ + I Y+IC+ +S A + +AY+ +E + + K+ ID ++Y+S Q+
Sbjct: 1181 GKSENQLVNNFIPYVICQQTYGDTTKSSTALSDKAYHPDEVISSRGKVTIDSDWYVSTQL 1240
Query: 1004 HPVVTRLLEPIEGTDAVRIAECLGLDTSLYR--SQIKESIQQSEE------NILGVGEAE 1055
P +TRL+E IEG + +A+CLGLD YR S+ K + +++ +L
Sbjct: 1241 LPPITRLIEHIEGIEVEFVAQCLGLDPKKYRYHSEKKNTDNPTDDPLIVSNPVLQTETER 1300
Query: 1056 EVKYQFCDKFEFTCMNPSCKQVNTVEAPTRLSTHGVVFVLDECINPECKVPPYTYLPHLI 1115
+K + + C P C S++ C+ ++P +++
Sbjct: 1301 SLKNRTVAELNIKC--PHCAHNYHFPGILVPSSNNTELTGLACVKCNQRIPD----AYML 1354
Query: 1116 NKLSQDMNKYIVKYYEGWLKCEDPGCSDLTRRCPLGLKTRLCTTCHKYKLHRVYTELQLY 1175
N+L+ + + YY G +C++P C T + L L + K K++ Y+EL++
Sbjct: 1355 NRLNLFLKQLTALYYLGMKECKEPQCGMKTNQ--LLLNNKCIVKGCKGKMNSEYSELRIN 1412
Query: 1176 QQLSFFHYICDITKALTKSDTPSIKFDS----ETYMGYCKMKQHVERFLESSAYNIVDLK 1231
L + + ++ K L +++ K++ + + ++++ VE F+ S YN VDL
Sbjct: 1413 DTLRYLEGLFNVKKFLIENEKYRKKYEKPELVPNFQSFKELQKKVESFMIRSGYNKVDLG 1472
Query: 1232 KLFS 1235
+F
Sbjct: 1473 NIFG 1476
Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 130/534 (24%), Positives = 250/534 (46%), Gaps = 59/534 (11%)
Query: 72 VKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGREIFD--DDIEDV 129
+KH + + ++EE+ + EY + R+ DD+I DD G GY + G EI+D D+E+V
Sbjct: 2 IKHILQVEETKKIFEEIDDNEYEKIQDSRKNDDFIVDDDGYGYRDHGGEIWDRDGDVEEV 61
Query: 130 PQKKEK-HDKRKKNKNIQNPNAKGDIQKLLANM----PVKKKKKEEVQLNNDDVLADLLS 184
+KK+K + N+NI N K +N P ++K + + D++ +L
Sbjct: 62 GKKKKKKQNNHDPNENIMNYMMPASTLKKKSNAASTNPSAQQKPKVSVEQSRDIMNNLFQ 121
Query: 185 EVNTTIAPTLK-LNTKTNEIVIPKEEPPAPTAKEYLANFSKPIKVEKKIEKPIKKEPSPL 243
+++ L+ +N N V P A +E N + +E ++E
Sbjct: 122 QLDAKDVDELEDVNEAKNMFVQEMNRPVAFNKEEDFNN-----RYSVTLESREEQERRRQ 176
Query: 244 KDEIKSNDSVMEVEMNVAEQSKEEPVDDGLWEQMQIDDWDNSQQTQDV---------LPE 294
+++K ++ + + +V SK+ +D+ ++Q+Q + + + Q + V +
Sbjct: 177 SEQLKQQANIGQNQSDVNPFSKKRKLDE--FQQVQANSYQSKQNSHSVSKSKPGDHEMAN 234
Query: 295 QAK-VELQIEAIE---------SQSIEEKVDVTNVESVSSAVELSTSPPPQVVEKKEHKC 344
A V+L + AI+ S+ I + + V SV+ + ST+ Q+ E
Sbjct: 235 HADGVDLNLLAIDDTKMTDSHPSEIITQNQRASAVSSVNQQIMESTNGKNQL----EKND 290
Query: 345 AEWEAIQTEPST-------SEPQVHSRTADDSLPLATDHENKKVFRMFFLDAFEDIYKQP 397
EW+ ++ + + ++ + S D LPL D +++DA E+
Sbjct: 291 TEWQQMKEKNAVFNQDLRMNDNALMSNQQDYPLPLNED----GTLSFYWIDAHEE--NNG 344
Query: 398 GTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLP------RSEHLKTKEPVSIAQVYSE 451
+++FGK++ E SC + V + R++++LP R+ +E +V E
Sbjct: 345 ADLFVFGKIYQHEERKFVSCSIKVNGMQRELFVLPKMSGKSRAAMTTEEEKEQARKVMME 404
Query: 452 FDQIATQY-KILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHV 510
+ + ++ I ++ + + +KYAF LP ++++++Y A P+LPS + G+TF +
Sbjct: 405 LEGVRKRFPAITKWRCKPVTRKYAFELPIQHGEHQFVKIKYDATFPSLPSTVQGNTFECI 464
Query: 511 FGTKSSFLENLLLERKIKGPSWLEFPEAEKFPS-RISWCKYEVQCNQMEKIRIT 563
FG S LE+ +L+RKI+GP W+ +K R +WCK E+ + + I IT
Sbjct: 465 FGANQSMLESFILKRKIRGPCWMTIRNPQKVTDFRRTWCKQEILVSNPKDIEIT 518
>sp|O00874|DPOLA_LEIDO DNA polymerase alpha catalytic subunit OS=Leishmania donovani PE=3
SV=1
Length = 1339
Score = 372 bits (956), Expect = e-102, Method: Compositional matrix adjust.
Identities = 215/483 (44%), Positives = 307/483 (63%), Gaps = 32/483 (6%)
Query: 561 RITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEANKGKG 620
R+T + GN+ SRTL G RSER E+LLLH FH+ ++ PD+ Y +N K G + E GK
Sbjct: 670 RLTTIAGNLWSRTLFGARSERIEYLLLHTFHDLKFITPDR-YVQNFKRGRDDEEEEDGK- 727
Query: 621 RKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDI---- 676
+KA Y GG+VL+PK G Y +I+L+DFNSLYPS+IQE+NICFTT+ + D+
Sbjct: 728 -RKAKYQGGMVLDPKCGLYSDYILLLDFNSLYPSLIQEFNICFTTVDRESGSEIDVPPPE 786
Query: 677 TTLCEY-----LPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKAL 731
+C L + +LP IK LV+SRR+VK LMK +++L + +IRQKAL
Sbjct: 787 NLICASCAAAGLSAPCLHKCVLPKVIKSLVDSRREVKRLMKIEKDANNLAL-LEIRQKAL 845
Query: 732 KLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLN--YEVIYGDTDSLM 789
KLTANSMYGCLGF SRF AQPLA LVT +GR L +T L+ LN VIYGDTDS+M
Sbjct: 846 KLTANSMYGCLGFEYSRFHAQPLAELVTRQGRLALQSTVDLIPQLNPSLRVIYGDTDSVM 905
Query: 790 ISCNV-NDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNG 848
I + ND +V +G +K++ NK Y+ LE+DIDGV++ +LLLKKKKYAAL+++
Sbjct: 906 IQTGIKNDIKAVRDLGLDLKAKINKRYQSLEIDIDGVFRAILLLKKKKYAALTVTDWQGE 965
Query: 849 KMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQS---YTDYSLDDRLQNIHEHMKK 905
+E+KG+D+VRRDW L+ V+S++L+ + DY + + ++++ E ++
Sbjct: 966 GKTYKKEVKGLDMVRRDWCPLSKCVCDSVLSRVLNAEGSEDILDYVM-NYMRDVSEKVRA 1024
Query: 906 IRTDLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQGDTISYI 965
R LDN FV I+K LTK PE Y + PH VALR+ + ++ GD I Y+
Sbjct: 1025 GRYTLDN-FV------ISKSLTKEPEAYRG-NSFPHATVALRMKQ-RKELVRVGDLIPYV 1075
Query: 966 ICEDGTSEAATQRAYNIEELKNNSKLKIDVNYYLSQQIHPVVTRLLEPIEGTDAVRIAEC 1025
IC T + + +A+++EE++ NS+L+ID +YLS QI+P V RL E I+G +++E
Sbjct: 1076 IC---TGDRLSDKAFHVEEVRQNSQLQIDSEWYLSVQIYPPVMRLCEHIQGFSNAQLSEA 1132
Query: 1026 LGL 1028
+G+
Sbjct: 1133 MGI 1135
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 72/260 (27%), Positives = 126/260 (48%), Gaps = 23/260 (8%)
Query: 313 KVDVTNVESVSSAVELSTSPPPQVVEKKEHKCAEW--EAIQTEPSTSEPQVHSRTADDSL 370
K ++ NVE SA P P ++ E +AI+ + + ++ ++
Sbjct: 172 KDELFNVERDQSAKPPRPRPTPGAGGGAGYRNEETPKQAIELTATLAPQMDAAQFVSPAV 231
Query: 371 PLATDHENKKVFRMFFLDAFEDIYK---QPGTVYLFGKVFVKENN--SHSSCCVIVQNID 425
P + + +F ++ DA E + PG+++LFGK+ V++N S+ SCCV V+N+
Sbjct: 232 PYKSGEMTEGLF--YWFDAREQPHTLSVDPGSLFLFGKMAVEKNGRTSYLSCCVRVRNMY 289
Query: 426 RKIYLLPRSEHLKTKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVP-DLS 484
R +++LP++ S V E + I I + + +E+ YAF +PGVP + +
Sbjct: 290 RSVFVLPKAGS-------SQEDVVKEINDICRNQGIEQRRIKFVERYYAFEVPGVPHEKT 342
Query: 485 EYLEVRYSAKCPALPSDLSGDTFSHVF---GTKSSFLENLLLERKIKGPSWLEFPEAEKF 541
++ ++RY + P L + F H+ G SS LE L++RK+KGPS+L
Sbjct: 343 QWAKLRYPGRYPPLNAK---GPFRHILIIMGASSSLLELFLIKRKLKGPSFLRISGLVAS 399
Query: 542 PSRISWCKYEVQCNQMEKIR 561
+RIS C E + +R
Sbjct: 400 ANRISHCALEFSVESPKNLR 419
>sp|P27727|DPOLA_TRYBB DNA polymerase alpha catalytic subunit OS=Trypanosoma brucei brucei
PE=3 SV=1
Length = 1339
Score = 364 bits (934), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 212/492 (43%), Positives = 301/492 (61%), Gaps = 40/492 (8%)
Query: 561 RITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEANKGKG 620
R+T + GN+ SRTL G RSER E+LLLHAFH +V PDK+ K++ + E + +G
Sbjct: 668 RLTLLAGNLWSRTLYGARSERIEYLLLHAFHNLKFVTPDKK----KRDLKRGREDDDDEG 723
Query: 621 RKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTL- 679
++K Y GG+VLEPK G Y ++I+L+DFNSLYPS+IQE+N+C+TTI D D T+
Sbjct: 724 KRKTKYQGGMVLEPKSGLYSEYILLLDFNSLYPSLIQEFNVCYTTI------DRDENTVS 777
Query: 680 -------------CEY--LPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQY 724
C LP + ILP I+ LV+SRR++K +MK +L M
Sbjct: 778 AEVPPPESLICLSCRAAGLPSPCLHKCILPKVIRGLVDSRREIKRMMKSEKDPGNLAM-L 836
Query: 725 DIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLN--YEVIY 782
+IRQ ALKLTANSMYGCLGF SRF+AQPLA LVT +GR L NT L+ ++ VIY
Sbjct: 837 EIRQLALKLTANSMYGCLGFEYSRFYAQPLAELVTRQGRLALQNTVELIPQISPSIRVIY 896
Query: 783 GDTDSLMISCNV-NDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALS 841
GDTDS+MI + +D V +G +IK + N+ Y+ LELDIDGV++ MLLL+KKKYAALS
Sbjct: 897 GDTDSVMIQTGIKDDIVKVRNLGFEIKGKVNQRYQSLELDIDGVFRAMLLLRKKKYAALS 956
Query: 842 ISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHE 901
+ + +E+KG+D+VRRDW L+ V+ +IL+ + +D L + +
Sbjct: 957 VVDWQGEGKVYKREVKGLDMVRRDWCPLSQHVSDAVLKRILNAEGG-----EDILDFVIK 1011
Query: 902 HMKKIRTDLDNGFV-PLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQGD 960
+MK + D+ +G V PL I+K LTK PE Y PH VALR+ + ++ GD
Sbjct: 1012 YMKGVAQDVRSGNVYPLEEFVISKSLTKEPESYHG-TGYPHAVVALRMKQ-RKEGVRVGD 1069
Query: 961 TISYIICEDGTSEAATQRAYNIEELKNNSKLKIDVNYYLSQQIHPVVTRLLEPIEGTDAV 1020
I Y+ICE E +AY+I+E++ + L +DV +YLS Q++P V RL E I+G
Sbjct: 1070 LIPYVICEG--DEHIDDKAYHIDEVRRSDGLSVDVEWYLSSQLYPPVMRLCEHIQGFVPE 1127
Query: 1021 RIAECLGLDTSL 1032
+++E + + + +
Sbjct: 1128 QLSEAMCIASHM 1139
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 94/185 (50%), Gaps = 11/185 (5%)
Query: 384 MFFLDAFEDIYK--QPGTVYLFGKVFV-KENNSHSSCCVIVQNIDRKIYLLPRSEHLKTK 440
++ DA E + PGT+ LFGKV + +E+ SCCV +Q++ R ++LLP K
Sbjct: 243 FYWFDAKEQPHTLTAPGTILLFGKVCMNEEDEEFRSCCVRIQHVHRNVFLLP-------K 295
Query: 441 EPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVP-DLSEYLEVRYSAKCPALP 499
E + A+V E + I I + + + +E+ YAF PGVP + + + ++ Y + P P
Sbjct: 296 EGSTDAEVVQEINAICRGSGIEERRIKFVERYYAFEEPGVPREKNRWAKLVYPGRYPPFP 355
Query: 500 SDLSGDTFSHVFGTKSSFLENLLLERKIKGPSWLEFPEAEKFPSRISWCKYEVQCNQMEK 559
+ V G S LE L+++++ GPS+LE R+S CK E +
Sbjct: 356 NKGGLTHVQVVVGASRSLLELFLIKKRLMGPSYLEIEHLVTAMDRVSHCKTEFLVPSPKD 415
Query: 560 IRITN 564
I++ N
Sbjct: 416 IKVYN 420
>sp|Q54SV8|DPOLA_DICDI DNA polymerase alpha catalytic subunit OS=Dictyostelium discoideum
GN=pola1 PE=3 SV=1
Length = 1509
Score = 363 bits (931), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 249/687 (36%), Positives = 381/687 (55%), Gaps = 42/687 (6%)
Query: 561 RITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEANKGKG 620
++TN+ GN ++L R+ER E+LLLH FHEK Y+LPDK Y K+ G G +K
Sbjct: 827 QLTNLAGNQWDKSLKSNRAERIEYLLLHNFHEKKYLLPDKIYQKSSSSGGGGGAKDKDN- 885
Query: 621 RKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLC 680
AAYSGGLVL+PK FYD++++L+DFNSLYPSIIQEYN+CFTTI R+ +D D
Sbjct: 886 --HAAYSGGLVLDPKIDFYDRYVVLLDFNSLYPSIIQEYNVCFTTIN-RVKRD-DGKWEE 941
Query: 681 EYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYG 740
P ++ GILP + LV RR++K M+Q + + QYDI+Q+A+KL ANSMYG
Sbjct: 942 AMPPPSSIEKGILPKVLHGLVSKRREIKKRMEQEK-NKIIKAQYDIQQQAVKLIANSMYG 1000
Query: 741 CLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSV 800
CLGF +SRF+A PLA LVT KGRE L S+V + Y+VIYGDTDSLMI V ++
Sbjct: 1001 CLGFSHSRFYALPLAELVTRKGRENLQKGASIVNKMCYDVIYGDTDSLMIYTGVGTFNEA 1060
Query: 801 FKIGNQIKSECNKLYKQ--LELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKG 858
IG +I+ + N Y+ +E+ +DG++K +LL KKKKYA L ++ + C +E KG
Sbjct: 1061 ETIGKEIQKKINDQYRGSVMEIGLDGIFKRLLLFKKKKYACLKEFRIDSTTTKCERENKG 1120
Query: 859 VDVVRRDWSQLASEAGKFVISQIL-DEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPL 917
+D+VRRD+ L + G++V++ IL E+ +SL I E+++ ++ + + + +
Sbjct: 1121 IDIVRRDYCDLTKDIGQWVLNLILGGEEKIALFSL------IKEYLESVQQQIKDNTLAV 1174
Query: 918 TLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQGDTISYIICEDGTS----E 973
ITK L+K PEEY D PHVQVAL++ ++ G+ + YII +S E
Sbjct: 1175 EKFIITKTLSKQPEEYNDADIQPHVQVALQM-RAKGLHVQPGEQVPYIITHGNSSSDIKE 1233
Query: 974 AATQRAY---NIEELKNNSKLKIDVNYYLSQQIHPVVTRLLEPIEGTDAVRIAECLGLDT 1030
RA ++E +++ +D+++YLSQQI P + R PI G + +A+ LG+
Sbjct: 1234 EWHHRARAPSDVESIQD-----VDIDWYLSQQILPSIQRNTGPI-GMEPHELAQWLGMTG 1287
Query: 1031 SLYRSQIKESIQQSEENILG--VGEAEEVKYQFCDKFEFTCMNPSCKQVNTVEAPTRLST 1088
+ Y+ Q QQS ++ E+++Y+ C F F C P C Q N ++ +
Sbjct: 1288 TKYQKQFDHLQQQSNQDFKPRYTLSTEDLRYKQCKSFNFEC--PYCGQNNEFTGIVKIDS 1345
Query: 1089 HGVVFVLDECINPECKVPPYTYLPHLINKLSQDMNKYIVKYYEGWLKCEDPGCSDLTRRC 1148
G +C K+P L L N+L ++ Y+ +Y + L+C + C +++
Sbjct: 1346 EGKSESGFDCNQCHAKIP----LKKLANQLQLNIRTYLKQYNDWDLRCTE--CEKVSKNY 1399
Query: 1149 PLGLKTRLCTTCHKYKLHRVYTELQLYQQLSFFHYICDITKALTKSDTPSIKFDSETYMG 1208
R + K+ ++ T +L+ Q+SFF + L+ SD + +E
Sbjct: 1400 K-ETSYRCARPQCRGKMIQIMTSSKLFNQISFFSKL--FRNDLSNSDNTTTIIPNEDQNT 1456
Query: 1209 YCKMKQHVERFLESSAYNIVDLKKLFS 1235
+ KQ ++ FL V+L L +
Sbjct: 1457 LKQAKQIIDSFLSKFDQYNVNLNSLLT 1483
Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/257 (25%), Positives = 113/257 (43%), Gaps = 54/257 (21%)
Query: 356 TSEPQVHSRTADDSLPLATDHE-----NKKVFRM-------FFLDAFEDIYKQPGTVYLF 403
T++ S+T DS+ L E N + +M FFL E+ + G + LF
Sbjct: 341 TNQEDWWSKTGVDSVVLVKKLEEIMPKNSDLLKMNMDGSLDFFLLTTEE--DKQGRIILF 398
Query: 404 GKVFVKENNS--------------------------HSSCCVIVQNIDRKIYLLPRSEHL 437
GKV ++ + S ++SCC+I++ ++R ++ LPR L
Sbjct: 399 GKVKLQASKSNKPGGGGGATKQTSITDEPVTKVPLKYASCCIIIEKMERNVFFLPRDYKL 458
Query: 438 -----KTKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAF-------NLPGVPDLSE 485
T V+ + +E Q+ + KI D+K +K+++ AF N P V +
Sbjct: 459 DQDGESTTIQVTDTMIEAELKQLVDRSKIKDYKLKKVKRTSAFDYSVPHKNGP-VGEQHY 517
Query: 486 YLEVRYSAKCPALPSDLSGDTFSHVFGTKSSFLENLLLERKIKGPSWLEFPEAE-KFPSR 544
++ Y + P+D+ G TF +G SS +E L++RKI GP+WL F +
Sbjct: 518 VWKLSYPSNQMVFPNDIKGSTFRCAYGITSSPVELFLIKRKIMGPTWLTVSGITLNFDQK 577
Query: 545 ISWCKYEVQCNQMEKIR 561
S+ +YE + I+
Sbjct: 578 KSFARYEATVKSFKSIK 594
>sp|Q27152|DPOLA_OXYTR DNA polymerase alpha catalytic subunit OS=Oxytricha trifallax PE=3
SV=1
Length = 1513
Score = 358 bits (920), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 259/730 (35%), Positives = 388/730 (53%), Gaps = 70/730 (9%)
Query: 560 IRITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQ--YGKNKKEGEETGE--- 614
+++TN+ GN+ R+L R+ERNE LLLH F +K ++LPDK+ + K+ K E
Sbjct: 792 LQLTNIAGNLWFRSLQNARAERNEMLLLHEFKKKKFILPDKKAPFAKDFKRNMFADEFEE 851
Query: 615 ------ANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI-- 666
KG RKKAAY+GGLV+EPK GFYD I+L+DFNSLYPSIIQEYN+CFTT+
Sbjct: 852 LKSGKGPKKGGKRKKAAYAGGLVIEPKAGFYDNIILLLDFNSLYPSIIQEYNLCFTTVNR 911
Query: 667 -PVRMLQDSDITTLCEY---------------LPEHQVDT--GILPSEIKKLVESRRQVK 708
P + S++ + + LP+ V+ +LP+ ++ LV+ R+ VK
Sbjct: 912 RPTKNFDGSEVKSQFKAAGTDANEGNEVEEADLPDKNVNVKDAVLPNVLRDLVQKRKAVK 971
Query: 709 ALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLN 768
MK + L Q +IRQKA+KLTANSMYGCLGF +SRF AQ +AAL+T GR+ LL
Sbjct: 972 EKMKNEK-DAVKLSQLEIRQKAIKLTANSMYGCLGFGSSRFHAQAIAALITKTGRDTLLR 1030
Query: 769 TKSLVEN-LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKS-ECNKLYKQLELDIDGVY 826
TK + EN L + V+YGDTDS+MI+ N ++G + + + LYK LE++IDGV+
Sbjct: 1031 TKDIAENKLGFNVVYGDTDSIMINTGTNQLQQSLEMGKRPQGLKLIALYKCLEIEIDGVF 1090
Query: 827 KYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQS 886
K +LLLKKKKYAAL QE+KG+D+VRRDW L+ G FV++QIL +
Sbjct: 1091 KSLLLLKKKKYAALKYEGFGTPDAKVVQEVKGLDMVRRDWCPLSKNVGNFVLNQILSGKQ 1150
Query: 887 YTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVAL 946
D L N++E++ I + N + L ITKQLTKA EY+D K PHV VA
Sbjct: 1151 REDVVL-----NLNEYLSDIGEKMKNNGITLDQFIITKQLTKAISEYSDIKGQPHVAVAQ 1205
Query: 947 RLNNTN-SKKLKQGDTISYIICE-----DGTSEAATQRAYNIEE-LKNNSKLKIDVNYYL 999
RL N S+ + I Y+I T+ A +AY+ EE + + K+ +D+ +Y+
Sbjct: 1206 RLKNQGKSESDLVNNFIPYVIGAQPFDPSKTNPALAGKAYHPEEVVSSKGKILLDIEWYI 1265
Query: 1000 SQQIHPVVTRLLEPIEGTDAVRIAECLGLDTSLYRSQIKESIQQSEEN---------ILG 1050
+ Q+ P +TRL+E I+G D +A+CLG+D Y+ E N IL
Sbjct: 1266 TMQVLPPITRLIEHIDGIDVEFVAQCLGVDPKKYKYHSSEKKTGETNNDDGTLIQNPILQ 1325
Query: 1051 VGEAEEVKYQFCDKFEFTCMNPSCKQVNTVEAPTRLSTHGVVFVLDECINPECKVP-PYT 1109
+K + + C P C + + P + G L + +C P P
Sbjct: 1326 TETERSLKGRTIAELTIKC--PHCSE--SYHFPG-IFQDGKNNTLSGLLCIKCTQPIPEA 1380
Query: 1110 YLPHLINKLSQDMNKYIVKYYEGWLKCEDPGCSDLTRRCPLGLKTRLCTTCHKYKLHRVY 1169
Y+ N+++ + + + YY+G +C++P C ++R+ L + K K Y
Sbjct: 1381 YIQ---NRVTLFLKQLLTLYYQGNKQCQEPACGAVSRQ--LLYNNKCINLACKLKNDTRY 1435
Query: 1170 TELQLYQQLSFFHYICDITKALTKSDTPSIKFDS----ETYMGYCKMKQHVERFLESSAY 1225
TE + L + + ++ K + ++ + + + +M+ V+ + S Y
Sbjct: 1436 TEQKTNDTLRYLQGLFNVKKYIQENQKNGCVHKTVEEVPNFDAFARMQGKVDDIMIRSKY 1495
Query: 1226 NIVDLKKLFS 1235
N VDL +F+
Sbjct: 1496 NKVDLSSIFN 1505
Score = 98.2 bits (243), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 116/233 (49%), Gaps = 25/233 (10%)
Query: 349 AIQTEPSTSEP--------QVHSRTADDSLPLATDHENKKVFRMFFLDAFEDIYKQPGT- 399
I+ + TS+P QV + T + LPL +EN +++DA E+ GT
Sbjct: 319 GIKLDNRTSKPIRNLEIWNQVLANTQEFPLPL---NENG-TLSFYWIDAHEE---NNGTD 371
Query: 400 VYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLP------RSEHLKTKEPVSIAQVYSEFD 453
+Y+FGK++ + SC + V + R++Y LP R +E + V E D
Sbjct: 372 LYIFGKIYQPQMRQFVSCSMKVNGMQRELYALPKMRGKARGALTVEEEKQQVRAVMMELD 431
Query: 454 QIATQY--KILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVF 511
I + +I ++ + + +KYAF +P ++L+++Y + P LPS + G+TF +F
Sbjct: 432 DIRKKRFPQISKWRCKPVNRKYAFEMPIQHGEHQFLKIKYDSTMPPLPSTIQGNTFECIF 491
Query: 512 GTKSSFLENLLLERKIKGPSWLEFPEAEKFPS-RISWCKYEVQCNQMEKIRIT 563
G+ S LE +L+RKI+GP W+ K + +WC+ + + + + +T
Sbjct: 492 GSTQSMLELFILKRKIRGPCWMTIKNPTKVTDFKKTWCRQGIVIDNPKNVEVT 544
>sp|Q9LVN7|DPOD1_ARATH DNA polymerase delta catalytic subunit OS=Arabidopsis thaliana
GN=POLD1 PE=2 SV=2
Length = 1095
Score = 186 bits (472), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 155/487 (31%), Positives = 244/487 (50%), Gaps = 70/487 (14%)
Query: 555 NQMEKIRITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGE 614
N +E R+T V +S L G+S + LL +K+ VLP+ K+ G E G
Sbjct: 527 NYVEMARVTGV---PISFLLARGQSIKVLSQLLRKGKQKNLVLPNA-----KQSGSEQG- 577
Query: 615 ANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDS 674
Y G VLE + GFY+K I +DF SLYPSI+ YN+C+ T ++
Sbjct: 578 ----------TYEGATVLEARTGFYEKPIATLDFASLYPSIMMAYNLCYCT----LVTPE 623
Query: 675 DITTLCEYLPEHQVDT-------------GILPSEIKKLVESRRQVKALMKQPN--LSSD 719
D+ L PEH T GILP +++L+ +R++ KA +K+ L
Sbjct: 624 DVRKL-NLPPEHVTKTPSGETFVKQTLQKGILPEILEELLTARKRAKADLKEAKDPLEKA 682
Query: 720 LLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN---- 775
+L D RQ ALK++ANS+YG G + +++ VT+ GR+++ TK LVE+
Sbjct: 683 VL---DGRQLALKISANSVYGFTGATVGQLPCLEISSSVTSYGRQMIEQTKKLVEDKFTT 739
Query: 776 -----LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLY-KQLELDIDGVYKYM 829
N EVIYGDTDS+M+ V+D ++ +G + + + K ++L+ + VY
Sbjct: 740 LGGYQYNAEVIYGDTDSVMVQFGVSDVEAAMTLGREAAEHISGTFIKPIKLEFEKVYFPY 799
Query: 830 LLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTD 889
LL+ KK+YA L +N + + KG++ VRRD L +++IL
Sbjct: 800 LLINKKRYAGL---LWTNPQQFDKMDTKGIETVRRDNCLLVKNLVTESLNKIL------- 849
Query: 890 YSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLN 949
+D + E++KK +DL + L+LL ITK LTK ++Y + A H ++A R+
Sbjct: 850 --IDRDVPGAAENVKKTISDLLMNRIDLSLLVITKGLTKTGDDYEVKSA--HGELAERMR 905
Query: 950 NTNSKKLKQ-GDTISYIICEDGTSEAATQRAYN-IEELKNNSKLKIDVNYYLSQQIHPVV 1007
++ GD + Y+I + A +R+ + I L+NN + ID NYYL QI +
Sbjct: 906 KRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLQNN--IPIDPNYYLENQISKPL 963
Query: 1008 TRLLEPI 1014
R+ EP+
Sbjct: 964 LRIFEPV 970
>sp|O48901|DPOD1_SOYBN DNA polymerase delta catalytic subunit OS=Glycine max GN=POLD1 PE=2
SV=1
Length = 1088
Score = 177 bits (449), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 152/483 (31%), Positives = 245/483 (50%), Gaps = 62/483 (12%)
Query: 555 NQMEKIRITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGE 614
N +E R+T V +S L G+S + LL +K+ V+P+ K+ G E G
Sbjct: 492 NYVEMARVTGV---PISFLLSRGQSIKVLSQLLRRARQKNLVIPNA-----KQAGSEQG- 542
Query: 615 ANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPV----RM 670
+ G VLE + GFY+K I +DF SLYPSI+ YN+C+ T+ + R
Sbjct: 543 ----------TFEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVIPEDARK 592
Query: 671 L----QDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPN--LSSDLLMQY 724
L + + T E + + GILP +++L+ +R++ KA +K+ L +L
Sbjct: 593 LNIPPESVNRTPSGETFVKSNLQKGILPEILEELLTARKRAKADLKEAKDPLEKAVL--- 649
Query: 725 DIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN--------- 775
D RQ ALK++ANS+YG G + +++ VT+ GR+++ +TK LVE+
Sbjct: 650 DGRQLALKISANSVYGFTGATIGQLPCLEISSSVTSYGRQMIEHTKKLVEDKFTTLNGYE 709
Query: 776 LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLY-KQLELDIDGVYKYMLLLKK 834
N EVIYGDTDS+M+ V+ + +G + + + K ++L+ + VY LL+ K
Sbjct: 710 HNAEVIYGDTDSVMVQFGVSAVEEAMNLGREAAEHISGTFTKPIKLEFEKVYYPYLLISK 769
Query: 835 KKYAALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLD 893
K+YA L +K N KM + KG++ VRRD L + +IL +D
Sbjct: 770 KRYAGLFWTKPDNFDKM----DTKGIETVRRDNCLLVKNLVNDCLHKIL---------ID 816
Query: 894 DRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNS 953
+ +++K +DL + L+LL ITK LTK ++Y + A HV++A R+ ++
Sbjct: 817 RDIPGAVQYVKNAISDLLMNRMDLSLLVITKGLTKTGDDYEVKAA--HVELAERMRKRDA 874
Query: 954 KKLKQ-GDTISYIICEDGTSEAATQRAYN-IEELKNNSKLKIDVNYYLSQQIHPVVTRLL 1011
GD + Y+I + A +R+ + I L+NN + ID +YYL QI + R+
Sbjct: 875 ATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENN--IPIDPHYYLENQISKPILRIF 932
Query: 1012 EPI 1014
EPI
Sbjct: 933 EPI 935
>sp|P61876|DPOL_PYRWO DNA polymerase OS=Pyrococcus woesei GN=pol PE=1 SV=1
Length = 775
Score = 177 bits (448), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 148/462 (32%), Positives = 233/462 (50%), Gaps = 54/462 (11%)
Query: 560 IRITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEANKGK 619
I+++ + G L E+ LL +E++ V P NK EE +
Sbjct: 331 IQLSRLVGQPLWDVSRSSTGNLVEWFLLRKAYERNEVAP------NKPSEEEY------Q 378
Query: 620 GRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDIT-- 677
R + +Y+GG V EP+KG ++ I+ +DF +LYPSII +N+ T+ + ++ DI
Sbjct: 379 RRLRESYTGGFVKEPEKGLWEN-IVYLDFRALYPSIIITHNVSPDTLNLEGCKNYDIAPQ 437
Query: 678 ---TLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLT 734
C+ +P G +PS + L+E R+++K MK+ + ++ D RQKA+KL
Sbjct: 438 VGHKFCKDIP------GFIPSLLGHLLEERQKIKTKMKETQDPIEKIL-LDYRQKAIKLL 490
Query: 735 ANSMYGCLGFPNSRFFAQPLAALVTAKGRE-ILLNTKSLVENLNYEVIYGDTDSLMISCN 793
ANS YG G+ +R++ + A VTA GR+ I L K L E ++V+Y DTD L +
Sbjct: 491 ANSFYGYYGYAKARWYCKECAESVTAWGRKYIELVWKELEEKFGFKVLYIDTDGLYATIP 550
Query: 794 VNDYDSVFKIGNQIKSECN-KLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMIC 852
+ + + K + N KL LEL+ +G YK + KK+YA + GK+I
Sbjct: 551 GGESEEIKKKALEFVKYINSKLPGLLELEYEGFYKRGFFVTKKRYAVID----EEGKVIT 606
Query: 853 SQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDN 912
+G+++VRRDWS++A E V+ IL +++ ++ + E ++K L N
Sbjct: 607 ----RGLEIVRRDWSEIAKETQARVLETILKHG-----DVEEAVRIVKEVIQK----LAN 653
Query: 913 GFVPLTLLEITKQLTKAPEEYTDRKAL-PHVQVALRLNNTNSKKLKQGDTISYIICE-DG 970
+P L I +Q+T+ EY KA+ PHV VA +L K+K G I YI+ DG
Sbjct: 654 YEIPPEKLAIYEQITRPLHEY---KAIGPHVAVAKKL-AAKGVKIKPGMVIGYIVLRGDG 709
Query: 971 TSEAATQRAYNIEELKNNSKLKIDVNYYLSQQIHPVVTRLLE 1012
+ RA EE + K K D YY+ Q+ P V R+LE
Sbjct: 710 ---PISNRAILAEEY-DPKKHKYDAEYYIENQVLPAVLRILE 747
>sp|P61875|DPOL_PYRFU DNA polymerase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 /
JCM 8422 / Vc1) GN=pol PE=1 SV=1
Length = 775
Score = 177 bits (448), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 148/462 (32%), Positives = 233/462 (50%), Gaps = 54/462 (11%)
Query: 560 IRITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEANKGK 619
I+++ + G L E+ LL +E++ V P NK EE +
Sbjct: 331 IQLSRLVGQPLWDVSRSSTGNLVEWFLLRKAYERNEVAP------NKPSEEEY------Q 378
Query: 620 GRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDIT-- 677
R + +Y+GG V EP+KG ++ I+ +DF +LYPSII +N+ T+ + ++ DI
Sbjct: 379 RRLRESYTGGFVKEPEKGLWEN-IVYLDFRALYPSIIITHNVSPDTLNLEGCKNYDIAPQ 437
Query: 678 ---TLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLT 734
C+ +P G +PS + L+E R+++K MK+ + ++ D RQKA+KL
Sbjct: 438 VGHKFCKDIP------GFIPSLLGHLLEERQKIKTKMKETQDPIEKIL-LDYRQKAIKLL 490
Query: 735 ANSMYGCLGFPNSRFFAQPLAALVTAKGRE-ILLNTKSLVENLNYEVIYGDTDSLMISCN 793
ANS YG G+ +R++ + A VTA GR+ I L K L E ++V+Y DTD L +
Sbjct: 491 ANSFYGYYGYAKARWYCKECAESVTAWGRKYIELVWKELEEKFGFKVLYIDTDGLYATIP 550
Query: 794 VNDYDSVFKIGNQIKSECN-KLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMIC 852
+ + + K + N KL LEL+ +G YK + KK+YA + GK+I
Sbjct: 551 GGESEEIKKKALEFVKYINSKLPGLLELEYEGFYKRGFFVTKKRYAVID----EEGKVIT 606
Query: 853 SQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDN 912
+G+++VRRDWS++A E V+ IL +++ ++ + E ++K L N
Sbjct: 607 ----RGLEIVRRDWSEIAKETQARVLETILKHG-----DVEEAVRIVKEVIQK----LAN 653
Query: 913 GFVPLTLLEITKQLTKAPEEYTDRKAL-PHVQVALRLNNTNSKKLKQGDTISYIICE-DG 970
+P L I +Q+T+ EY KA+ PHV VA +L K+K G I YI+ DG
Sbjct: 654 YEIPPEKLAIYEQITRPLHEY---KAIGPHVAVAKKL-AAKGVKIKPGMVIGYIVLRGDG 709
Query: 971 TSEAATQRAYNIEELKNNSKLKIDVNYYLSQQIHPVVTRLLE 1012
+ RA EE + K K D YY+ Q+ P V R+LE
Sbjct: 710 ---PISNRAILAEEY-DPKKHKYDAEYYIENQVLPAVLRILE 747
>sp|Q9LRE6|DPOD1_ORYSJ DNA polymerase delta catalytic subunit OS=Oryza sativa subsp.
japonica GN=POLD1 PE=2 SV=1
Length = 1105
Score = 176 bits (445), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 149/480 (31%), Positives = 240/480 (50%), Gaps = 56/480 (11%)
Query: 555 NQMEKIRITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGE 614
N +E R+T V +S L G+S + LL +K+ V+P+
Sbjct: 535 NYVEMARVTGV---PISFLLSRGQSIKVLSQLLRKAKQKNLVIPNI-------------- 577
Query: 615 ANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT-IP---VRM 670
KG+ + + G VLE + GFY+K I +DF SLYPSI+ YN+C+ T +P R
Sbjct: 578 --KGQASGQDTFEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVPPEDARK 635
Query: 671 L----QDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDI 726
L + + T E + V GILP +++L+ +R++ KA +K+ + + D
Sbjct: 636 LNLPPESVNKTPSGETFVKPDVQKGILPEILEELLAARKRAKADLKEAKDPFERAV-LDG 694
Query: 727 RQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN---------LN 777
RQ ALK++ANS+YG G + +++ VT+ GR+++ +TK LVE+ N
Sbjct: 695 RQLALKISANSVYGFTGATVGQLPCLEISSSVTSYGRQMIEHTKKLVEDKFTTLGGYEHN 754
Query: 778 YEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLY-KQLELDIDGVYKYMLLLKKKK 836
EVIYGDTDS+M+ V+ + K+G + + + K ++L+ + +Y LL+ KK+
Sbjct: 755 AEVIYGDTDSVMVQFGVSTVEDAMKLGREAADYISGTFIKPIKLEFEKIYFPYLLISKKR 814
Query: 837 YAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRL 896
YA L +N + + KG++ VRRD L + +IL +D +
Sbjct: 815 YAGLY---WTNPEKFDKMDTKGIETVRRDNCLLVKNLVTECLHKIL---------VDRDV 862
Query: 897 QNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKL 956
+++K +DL V L+LL ITK LTK E+Y + A HV++A R+ ++
Sbjct: 863 PGAVQYVKNTISDLLMNRVDLSLLVITKGLTKTGEDYAVKAA--HVELAERMRKRDAATA 920
Query: 957 KQ-GDTISYIICEDGTSEAATQRAYN-IEELKNNSKLKIDVNYYLSQQIHPVVTRLLEPI 1014
GD + Y+I + A +R+ + I L NN + ID YYL QI + R+ EPI
Sbjct: 921 PTVGDRVPYVIIKAAKGAKAYERSEDPIYVLDNN--IPIDPQYYLENQISKPLLRIFEPI 978
>sp|P90829|DPOD1_CAEEL DNA polymerase delta catalytic subunit OS=Caenorhabditis elegans
GN=F10C2.4 PE=3 SV=1
Length = 1081
Score = 172 bits (436), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 147/492 (29%), Positives = 248/492 (50%), Gaps = 65/492 (13%)
Query: 555 NQMEKIRITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGE 614
N +E R+T V N L L G+ + ++L + ++ LP E
Sbjct: 501 NYIEMARVTGVPMNFL---LTKGQQIKILSMMLRRCKQNNFFLP-------------VIE 544
Query: 615 ANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI---PVRML 671
AN G G Y G V++P +GFY++ I +DF SLYPSI+ +N+C+TT+ P +
Sbjct: 545 ANSGDGE---GYEGATVIDPIRGFYNEPIATLDFASLYPSIMIAHNLCYTTLLKSPQGVE 601
Query: 672 QDSDITTLC-EYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDL-LMQYDIRQK 729
+ I T +Y G+LP ++ ++ +R++ K MK N + M Y+ RQ
Sbjct: 602 NEDYIRTPSGQYFATKSKRRGLLPEILEDILAARKRAKNDMK--NEKDEFKRMVYNGRQL 659
Query: 730 ALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENL------------N 777
ALK++ANS+YG G + ++ VTA GR+++ TK VE + +
Sbjct: 660 ALKISANSVYGFTGATVGKLPCLEISQSVTAFGRKMIDMTKLEVERIYKKGALDGKCPAD 719
Query: 778 YEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYK-QLELDIDGVYKYMLLLKKKK 836
+VIYGDTDS+M+ V +IG E +K++ ++L+ + VY LL+ KK+
Sbjct: 720 AKVIYGDTDSVMVKFGVETVAQAMEIGLDAAKEVSKIFTPPIKLEFEKVYSPYLLINKKR 779
Query: 837 YAALSISKLS-NGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQIL---DEQSYTDYSL 892
YA L +K + KM C KG++ VRRD L ++ + ++L D+QS D++
Sbjct: 780 YAGLYFTKPDVHDKMDC----KGLETVRRDNCPLVAKVLGVCLEKLLIERDQQSALDFA- 834
Query: 893 DDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTN 952
K+ +DL + ++LL I+K+LTK+ ++Y ++A HV++A R+ +
Sbjct: 835 -----------KRTISDLLCNKIDISLLIISKELTKSGDKYQAKQA--HVELAARMKKRD 881
Query: 953 SKKL-KQGDTISYIICEDGTSEAATQRAYN-IEELKNNSKLKIDVNYYLSQQIHPVVTRL 1010
+ + GD + Y+ + A +RA + L+NN + +D +YL+ Q+ + R+
Sbjct: 882 AGSAPRLGDRVPYVFVAAAKNVPAYERAEDPTFVLQNN--IPLDTKHYLTNQLAKPLARI 939
Query: 1011 LEPIEGTDAVRI 1022
EPI G A +I
Sbjct: 940 FEPILGDRAEKI 951
>sp|P30316|DPOD_SCHPO DNA polymerase delta catalytic subunit OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pol3 PE=1 SV=2
Length = 1086
Score = 171 bits (433), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 158/558 (28%), Positives = 265/558 (47%), Gaps = 96/558 (17%)
Query: 626 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI-------PVRMLQDSD--I 676
Y G V+EP KG+YD I +DF+SLYPSI+Q +N+C+TT+ +++ QD D +
Sbjct: 566 YEGATVIEPIKGYYDTPIATLDFSSLYPSIMQAHNLCYTTLLDSNTAELLKLKQDVDYSV 625
Query: 677 TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQ---PNLSSDLLMQYDIRQKALKL 733
T +Y + V G+LP + L+ +R++ KA +K+ P + L D RQ ALK+
Sbjct: 626 TPNGDYFVKPHVRKGLLPIILADLLNARKKAKADLKKETDPFKKAVL----DGRQLALKV 681
Query: 734 TANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYEVIYGD 784
+ANS+YG G N R +++ VT+ GR+++ TK +VE + + VIYGD
Sbjct: 682 SANSVYGFTGATNGRLPCLAISSSVTSYGRQMIEKTKDVVEKRYRIENGYSHDAVVIYGD 741
Query: 785 TDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVYKYMLLLKKKKYAALSIS 843
TDS+M+ V K+G + + + + ++L+ + VY LL+ KK+YA L +
Sbjct: 742 TDSVMVKFGVKTLPEAMKLGEEAANYVSDQFPNPIKLEFEKVYFPYLLISKKRYAGLFWT 801
Query: 844 KLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHM 903
+ + S KG++ VRRD L S + ++L +D ++
Sbjct: 802 RTDTYDKMDS---KGIETVRRDNCPLVSYVIDTALRKML---------IDQDVEGAQLFT 849
Query: 904 KKIRTDLDNGFVPLTLLEITKQLTKAPEEYTDRKA-LPHVQVALRLNNTNSKKLKQ-GDT 961
KK+ +DL + ++ L ITK L+K TD A + HV++A R+ ++ GD
Sbjct: 850 KKVISDLLQNKIDMSQLVITKALSK-----TDYAAKMAHVELAERMRKRDAGSAPAIGDR 904
Query: 962 ISYIICEDGTSEAATQRAYN-IEELKNNSKLKIDVNYYLSQQIHPVVTRLLEPIEGTDAV 1020
++Y+I + + R+ + I L+NN + ID YYL Q+ + R+ EPI G A
Sbjct: 905 VAYVIIKGAQGDQFYMRSEDPIYVLENN--IPIDAKYYLENQLSKPLLRIFEPILGEKA- 961
Query: 1021 RIAECLGLDTSLYRSQIKESIQQSEENILGVGEAEEVKYQFCDKFEFTCMNPSCKQVNTV 1080
+SL +I + ++ G+ +F K E TC+ CK
Sbjct: 962 ---------SSLLHGDHTRTISMAAPSVGGI-------MKFAVKVE-TCL--GCK----- 997
Query: 1081 EAPTRLSTHGVVFVLDECINPECKVPPYTYLPHLINKLSQDMNKYIVKYYEGWLKC---- 1136
AP + G + + C+N + L + +N V++ W +C
Sbjct: 998 -APIK---KGKTALCENCLNRSAE---------LYQRQVAQVNDLEVRFARLWTQCQRCQ 1044
Query: 1137 ----EDPGCSDLTRRCPL 1150
+D C+ +R CP+
Sbjct: 1045 GSMHQDVICT--SRDCPI 1060
>sp|Q56366|DPOL_THES9 DNA polymerase OS=Thermococcus sp. (strain 9oN-7) GN=pol PE=1 SV=1
Length = 775
Score = 171 bits (433), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 129/402 (32%), Positives = 201/402 (50%), Gaps = 42/402 (10%)
Query: 620 GRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDIT-- 677
R++ Y+GG V EP++G +D I+ +DF SLYPSII +N+ T+ ++ D+
Sbjct: 378 ARRRGGYAGGYVKEPERGLWDN-IVYLDFRSLYPSIIITHNVSPDTLNREGCKEYDVAPE 436
Query: 678 ---TLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQP--NLSSDLLMQYDIRQKALK 732
C+ P G +PS + L+E R+++K MK L LL D RQ+A+K
Sbjct: 437 VGHKFCKDFP------GFIPSLLGDLLEERQKIKRKMKATVDPLEKKLL---DYRQRAIK 487
Query: 733 LTANSMYGCLGFPNSRFFAQPLAALVTAKGRE-ILLNTKSLVENLNYEVIYGDTDSLMIS 791
+ ANS YG G+ +R++ + A VTA GRE I + + L E ++V+Y DTD L +
Sbjct: 488 ILANSFYGYYGYAKARWYCKECAESVTAWGREYIEMVIRELEEKFGFKVLYADTDGLHAT 547
Query: 792 CNVNDYDSVFKIGNQIKSECN-KLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKM 850
D ++V K + N KL LEL+ +G Y + KKKYA + GK+
Sbjct: 548 IPGADAETVKKKAKEFLKYINPKLPGLLELEYEGFYVRGFFVTKKKYAVID----EEGKI 603
Query: 851 ICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDL 910
+G+++VRRDWS++A E V+ IL ++ +K++ L
Sbjct: 604 TT----RGLEIVRRDWSEIAKETQARVLEAILKHGD---------VEEAVRIVKEVTEKL 650
Query: 911 DNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQGDTISYIICEDG 970
VP L I +Q+T+ +Y + PHV VA RL K++ G ISYI+ +
Sbjct: 651 SKYEVPPEKLVIHEQITRDLRDY--KATGPHVAVAKRL-AARGVKIRPGTVISYIVLKG- 706
Query: 971 TSEAATQRAYNIEELKNNSKLKIDVNYYLSQQIHPVVTRLLE 1012
S RA +E + +K + D YY+ Q+ P V R+L+
Sbjct: 707 -SGRIGDRAIPADEF-DPTKHRYDAEYYIENQVLPAVERILK 746
>sp|P52431|DPOD1_MOUSE DNA polymerase delta catalytic subunit OS=Mus musculus GN=Pold1 PE=1
SV=2
Length = 1105
Score = 168 bits (425), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 147/489 (30%), Positives = 235/489 (48%), Gaps = 65/489 (13%)
Query: 552 VQCNQMEKIRITNV-CGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGE 610
V N +E R+T V G +L+R G+ + LL + ++P K EG
Sbjct: 526 VLVNNVEMARVTGVPLGYLLTR----GQQVKVVSQLLRQAMRQGLLMP-----VVKTEGS 576
Query: 611 ETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI---- 666
E Y+G V+EP KG+YD I +DF+SLYPSI+ +N+C+TT+
Sbjct: 577 ED-------------YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPG 623
Query: 667 ---PVRMLQDSDI-TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLM 722
+ + D I T + + V G+LP ++ L+ +R++ KA + Q +D L
Sbjct: 624 AAQKLGLKPDEFIKTPTGDEFVKSSVRKGLLPQILENLLSARKRAKAELAQ---ETDPLR 680
Query: 723 Q--YDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE------ 774
+ D RQ ALK++ANS+YG G + ++ VT GR+++ TK LVE
Sbjct: 681 RQVLDGRQLALKVSANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVESKYTVE 740
Query: 775 ---NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVYKYML 830
+ N +V+YGDTDS+M V+ +G + + + + + L+ + VY L
Sbjct: 741 NGYDANAKVVYGDTDSVMCRFGVSSVAEAMSLGREAANWVSSHFPSPIRLEFEKVYFPYL 800
Query: 831 LLKKKKYAALSISKLSNG--KMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYT 888
L+ KK+YA L S S+ KM C KG++ VRRD L + + +IL
Sbjct: 801 LISKKRYAGLLFSSRSDAHDKMDC----KGLEAVRRDNCPLVANLVTSSLRRIL------ 850
Query: 889 DYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRL 948
+D H K + +DL + ++ L ITK+LT+A +Y ++A HV++A R+
Sbjct: 851 ---VDRDPDGAVAHAKDVISDLLCNRIDISQLVITKELTRAAADYAGKQA--HVELAERM 905
Query: 949 NNTNSKKLKQ-GDTISYIICEDGTSEAATQRAYNIEELKNNSKLKIDVNYYLSQQIHPVV 1007
+ GD + Y+I AA ++ + + +S L ID YYL QQ+ +
Sbjct: 906 RKRDPGSAPSLGDRVPYVIIGAAKGVAAYMKSEDPLFVLEHS-LPIDTQYYLEQQLAKPL 964
Query: 1008 TRLLEPIEG 1016
R+ EPI G
Sbjct: 965 LRIFEPILG 973
>sp|P97283|DPOD1_MESAU DNA polymerase delta catalytic subunit OS=Mesocricetus auratus
GN=POLD1 PE=2 SV=1
Length = 1103
Score = 168 bits (425), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 147/489 (30%), Positives = 235/489 (48%), Gaps = 65/489 (13%)
Query: 552 VQCNQMEKIRITNV-CGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGE 610
V N +E R+T V G +LSR G+ + LL + ++P K EG
Sbjct: 524 VLVNNVEMARVTGVPLGYLLSR----GQQVKVVSQLLRQAMRQGLLMP-----VVKTEGG 574
Query: 611 ETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI---- 666
E Y+G V+EP KG+YD I +DF+SLYPSI+ +N+C+TT+
Sbjct: 575 ED-------------YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPG 621
Query: 667 ---PVRMLQDSDI-TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLM 722
+ + D I T + + V G+LP ++ L+ +R++ KA + Q +D L
Sbjct: 622 AAQKLGLKPDEFIKTPTGDEFVKSSVRKGLLPQILENLLSARKRAKAELAQ---ETDPLR 678
Query: 723 Q--YDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE------ 774
+ D RQ ALK++ANS+YG G + ++ VT GR+++ TK LVE
Sbjct: 679 RQVLDGRQLALKVSANSVYGFTGAEVGKLPCLEISQSVTGFGRQMIEKTKQLVESKYTLE 738
Query: 775 ---NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVYKYML 830
N N +V+YGDTDS+M V+ +G + + + + + L+ + VY L
Sbjct: 739 NGYNANAKVVYGDTDSVMCRFGVSSVAEAMSLGREAANWVSSHFPSPIRLEFEKVYFPYL 798
Query: 831 LLKKKKYAALSISKL--SNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYT 888
L+ KK+YA L S ++ +M C KG++ VRRD L + + +IL
Sbjct: 799 LISKKRYAGLLFSSQPDTHDRMDC----KGLEAVRRDNCPLVANLVTSSLRRIL------ 848
Query: 889 DYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRL 948
+D H K + +DL + ++ L ITK+LT+A +Y ++A HV++A R+
Sbjct: 849 ---VDRDPDGAVAHAKDVISDLLCNRIDISQLVITKELTRAAADYAGKQA--HVELAERM 903
Query: 949 NNTNSKKLKQ-GDTISYIICEDGTSEAATQRAYNIEELKNNSKLKIDVNYYLSQQIHPVV 1007
+ GD + Y+I AA ++ + + +S L ID YYL QQ+ +
Sbjct: 904 RKRDPGSAPSLGDRVPYVIIGAAKGVAAYMKSEDPLFVLEHS-LPIDTQYYLGQQLAKPL 962
Query: 1008 TRLLEPIEG 1016
R+ EPI G
Sbjct: 963 LRIFEPILG 971
>sp|P56689|DPOL_THEGO DNA polymerase OS=Thermococcus gorgonarius GN=pol PE=1 SV=1
Length = 773
Score = 167 bits (424), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 134/438 (30%), Positives = 215/438 (49%), Gaps = 55/438 (12%)
Query: 583 EFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKF 642
E+ LL +E++ + P NK + E R++ +Y+GG V EP++G ++
Sbjct: 354 EWFLLRKAYERNELAP------NKPDERELA-------RRRESYAGGYVKEPERGLWEN- 399
Query: 643 IILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDIT-----TLCEYLPEHQVDTGILPSEI 697
I+ +DF SLYPSII +N+ T+ ++ D+ C+ P G +PS +
Sbjct: 400 IVYLDFRSLYPSIIITHNVSPDTLNREGCEEYDVAPQVGHKFCKDFP------GFIPSLL 453
Query: 698 KKLVESRRQVKALMKQP--NLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLA 755
L+E R++VK MK + LL D RQ+A+K+ ANS YG G+ +R++ + A
Sbjct: 454 GDLLEERQKVKKKMKATIDPIEKKLL---DYRQRAIKILANSFYGYYGYAKARWYCKECA 510
Query: 756 ALVTAKGREILLNT-KSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECN-K 813
VTA GR+ + T + + E ++V+Y DTD + D ++V K + N K
Sbjct: 511 ESVTAWGRQYIETTIREIEEKFGFKVLYADTDGFFATIPGADAETVKKKAKEFLDYINAK 570
Query: 814 LYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEA 873
L LEL+ +G YK + KKKYA + K+ +G+++VRRDWS++A E
Sbjct: 571 LPGLLELEYEGFYKRGFFVTKKKYAVID----EEDKITT----RGLEIVRRDWSEIAKET 622
Query: 874 GKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEEY 933
V+ IL ++ +K++ L VP L I +Q+T+ ++Y
Sbjct: 623 QARVLEAILKHGD---------VEEAVRIVKEVTEKLSKYEVPPEKLVIYEQITRDLKDY 673
Query: 934 TDRKALPHVQVALRLNNTNSKKLKQGDTISYIICEDGTSEAATQRAYNIEELKNNSKLKI 993
+ PHV VA RL K++ G ISYI+ + S RA +E + +K K
Sbjct: 674 --KATGPHVAVAKRL-AARGIKIRPGTVISYIVLKG--SGRIGDRAIPFDEF-DPAKHKY 727
Query: 994 DVNYYLSQQIHPVVTRLL 1011
D YY+ Q+ P V R+L
Sbjct: 728 DAEYYIENQVLPAVERIL 745
>sp|P54358|DPOD1_DROME DNA polymerase delta catalytic subunit OS=Drosophila melanogaster
GN=DNApol-delta PE=2 SV=2
Length = 1092
Score = 166 bits (421), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 132/423 (31%), Positives = 218/423 (51%), Gaps = 47/423 (11%)
Query: 626 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPV----------RMLQDSD 675
Y G V+EPK+G+Y I +DF SLYPSI+ +N+C+TT+ + LQD
Sbjct: 566 YEGATVIEPKRGYYADPISTLDFASLYPSIMMAHNLCYTTLVLGGTREKLRQQENLQDDQ 625
Query: 676 I--TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQ--YDIRQKAL 731
+ T Y + +V G+LP ++ L+ +R++ K +K + +D + D RQ AL
Sbjct: 626 VERTPANNYFVKSEVRRGLLPEILESLLAARKRAKNDLK---VETDPFKRKVLDGRQLAL 682
Query: 732 KLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENL---------NYEVIY 782
K++ANS+YG G + ++ VTA GR ++ TK+ VE+ N VIY
Sbjct: 683 KISANSVYGFTGAQVGKLPCLEISGSVTAYGRTMIEMTKNEVESHYTQANGYENNAVVIY 742
Query: 783 GDTDSLMISCNVNDYDSVFKIGNQIKSEC-NKLYKQLELDIDGVYKYMLLLKKKKYAALS 841
GDTDS+M++ V + ++G + +K ++L+ + VY LL+ KK+YA L
Sbjct: 743 GDTDSVMVNFGVKTLERSMELGREAAELVSSKFVHPIKLEFEKVYYPYLLINKKRYAGLY 802
Query: 842 ISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIH 900
++ KM C KG++ VRRD S L + + ++L E+ D ++
Sbjct: 803 FTRPDTYDKMDC----KGIETVRRDNSPLVANLMNSCLQKLLIERD-PDGAV-------- 849
Query: 901 EHMKKIRTDLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKL-KQG 959
++K++ DL + ++ L ITK+L K +Y ++A HV++A ++ + K G
Sbjct: 850 AYVKQVIADLLCNRIDISHLVITKELAKT--DYAAKQA--HVELAAKMKKRDPGTAPKLG 905
Query: 960 DTISYIICEDGTSEAATQRAYNIEELKNNSKLKIDVNYYLSQQIHPVVTRLLEPIEGTDA 1019
D + Y+IC + A Q+A + + NS + ID YYL QQ+ + R+ EPI G +A
Sbjct: 906 DRVPYVICAAAKNTPAYQKAEDPLYVLENS-VPIDATYYLEQQLSKPLLRIFEPILGDNA 964
Query: 1020 VRI 1022
I
Sbjct: 965 ESI 967
>sp|P28339|DPOD1_BOVIN DNA polymerase delta catalytic subunit OS=Bos taurus GN=POLD1 PE=1
SV=1
Length = 1106
Score = 165 bits (418), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 144/489 (29%), Positives = 234/489 (47%), Gaps = 65/489 (13%)
Query: 552 VQCNQMEKIRITNV-CGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGE 610
V N ME R+T V G +LSR G+ + LL + ++P K EG
Sbjct: 527 VLVNAMEMARVTGVPLGYLLSR----GQQVKVVSQLLRQAMRQGLLMP-----VVKTEGG 577
Query: 611 ETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI---- 666
E Y+G V+EP KG+YD I +DF+SLYPSI+ +N+C+TT+
Sbjct: 578 ED-------------YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPG 624
Query: 667 ---PVRMLQDSDI-TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLM 722
+ + +D I T + + V G+LP ++ L+ +R++ KA + + +D L
Sbjct: 625 AAQKLGLTEDQFIKTPTGDEFVKASVRKGLLPQILENLLSARKRAKAELAK---ETDPLR 681
Query: 723 Q--YDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE------ 774
+ D RQ ALK++ANS+YG G R ++ VT GR+++ TK LVE
Sbjct: 682 RQVLDGRQLALKVSANSVYGFTGAQVGRLPCLEISQSVTGFGRQMIEKTKQLVETKYTVE 741
Query: 775 ---NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVYKYML 830
+ + +V+YGDTDS+M V+ +G + + + + L+ + VY L
Sbjct: 742 NGYSTSAKVVYGDTDSVMCRFGVSSVAEAMALGREAADWVSGHFPSPIRLEFEKVYFPYL 801
Query: 831 LLKKKKYAALSISKLSNG--KMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYT 888
L+ KK+YA L S + +M C KG++ VRRD L + + ++L
Sbjct: 802 LISKKRYAGLLFSSRPDAHDRMDC----KGLEAVRRDNCPLVANLVTASLRRLL------ 851
Query: 889 DYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRL 948
+D H + + +DL + ++ L ITK+LT+A +Y ++A HV++A R+
Sbjct: 852 ---IDRDPSGAVAHAQDVISDLLCNRIDISQLVITKELTRAAADYAGKQA--HVELAERM 906
Query: 949 NNTNSKKLKQ-GDTISYIICEDGTSEAATQRAYNIEELKNNSKLKIDVNYYLSQQIHPVV 1007
+ GD + Y+I AA ++ + + +S L ID YYL QQ+ +
Sbjct: 907 RKRDPGSAPSLGDRVPYVIISAAKGVAAYMKSEDPLFVLEHS-LPIDTQYYLEQQLAKPL 965
Query: 1008 TRLLEPIEG 1016
R+ EPI G
Sbjct: 966 LRIFEPILG 974
>sp|O54747|DPOD1_RAT DNA polymerase delta catalytic subunit OS=Rattus norvegicus GN=Pold1
PE=2 SV=1
Length = 1103
Score = 165 bits (418), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 146/489 (29%), Positives = 234/489 (47%), Gaps = 65/489 (13%)
Query: 552 VQCNQMEKIRITNV-CGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGE 610
V N +E R+T V G +LSR G+ + LL + ++P K EG
Sbjct: 524 VLVNNVEMARVTGVPLGYLLSR----GQQVKVVSQLLRQAMREGLLMP-----VVKTEGG 574
Query: 611 ETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI---- 666
E Y+G V+EP KG+YD I +DF+SLYPSI+ +N+C+TT+
Sbjct: 575 ED-------------YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPG 621
Query: 667 ---PVRMLQDSDI-TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLM 722
+ + D I T + + V G+LP ++ L+ +R++ KA + Q +D L
Sbjct: 622 AAQKLGLKPDEFIKTPTGDEFVKASVRKGLLPQILENLLSARKRAKAELAQ---ETDPLR 678
Query: 723 Q--YDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE------ 774
+ D RQ ALK++ NS+YG G + ++ VT GR+++ TK LVE
Sbjct: 679 RQVLDGRQLALKVSPNSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVETKYTLE 738
Query: 775 ---NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVYKYML 830
+ N +V+YGDTDS+M V+ +G + + + + + L+ + VY L
Sbjct: 739 NGYDANAKVVYGDTDSVMCRFGVSSVAEAMSLGREAANWVSSHFPSPIRLEFEKVYFPYL 798
Query: 831 LLKKKKYAALSISKLSNG--KMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYT 888
L+ KK+YA L S S+ +M C KG++ VRRD L + + +IL
Sbjct: 799 LISKKRYAGLLFSSRSDAHDRMDC----KGLEAVRRDNCPLVANLVTSSLRRIL------ 848
Query: 889 DYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRL 948
+D H K + +DL + ++ L ITK+LT+A +Y ++A HV++A R+
Sbjct: 849 ---VDRDPDGAVAHAKDVISDLLCNRIDISQLVITKELTRAAADYAGKQA--HVELAERM 903
Query: 949 NNTNSKKLKQ-GDTISYIICEDGTSEAATQRAYNIEELKNNSKLKIDVNYYLSQQIHPVV 1007
+ GD + Y+I AA ++ + + +S L ID YYL QQ+ +
Sbjct: 904 RKRDPGSAPNLGDRVPYVIIGAAKGVAAYMKSEDPLFVLEHS-LPIDTQYYLEQQLAKPL 962
Query: 1008 TRLLEPIEG 1016
R+ EPI G
Sbjct: 963 LRIFEPILG 971
>sp|P30315|DPOD1_PLAFK DNA polymerase delta catalytic subunit OS=Plasmodium falciparum
(isolate K1 / Thailand) GN=POLD1 PE=3 SV=1
Length = 1094
Score = 163 bits (412), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 142/416 (34%), Positives = 227/416 (54%), Gaps = 52/416 (12%)
Query: 626 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI-----PVRMLQDSDITTL- 679
Y G VLEP KG+Y + I +DF SLYPSI+ +N+C++T+ V LQ+ DITT+
Sbjct: 577 YEGATVLEPIKGYYIEPISTLDFASLYPSIMIAHNLCYSTLIKSNHEVSDLQNDDITTIQ 636
Query: 680 ----CEYLPEHQVDTGILPSEIKKLVESRRQVKALMK--QPNLSSDLLMQYDIRQKALKL 733
+++ ++ V GILP +++L+E+R++VK L+K + N++ M + RQ ALK+
Sbjct: 637 GKNNLKFVKKN-VKKGILPLIVEELIEARKKVKLLIKNEKNNITK---MVLNGRQLALKI 692
Query: 734 TANSMYGCLGFPN-SRFFAQPLAALVTAKGREILLNTKSLVENL---------NYEVIYG 783
+ANS+YG G + + +A +T GR ++ TK VE+ N VIYG
Sbjct: 693 SANSVYGYTGASSGGQLPCLEVAVSITTLGRSMIEKTKERVESFYCKSNGYEHNSTVIYG 752
Query: 784 DTDSLMISCNVNDYDSVFKIGNQIKSECNK-LYKQLELDIDGVYKYMLLLKKKKYAALSI 842
DTDS+M+ N+ + +G +K ++L+ + VY LLL KK+YA L
Sbjct: 753 DTDSVMVKFGTNNIEEAMTLGKDAAERISKEFLSPIKLEFEKVYCPYLLLNKKRYAGLLY 812
Query: 843 SKLS-NGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHE 901
+ + + KM C KG++ VRRD+ L + + V++++L E++ L + E
Sbjct: 813 TNPNKHDKMDC----KGIETVRRDFCILIQQMMETVLNKLLIEKN---------LNSAIE 859
Query: 902 HMK-KIRTDLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQ-G 959
+ K KI+ L N + ++LL +TK L K +Y R LPHV++A +L +S G
Sbjct: 860 YTKSKIKELLTNN-IDMSLLVVTKSLGKT--DYETR--LPHVELAKKLKQRDSATAPNVG 914
Query: 960 DTISYIICEDGTSEAATQRAYN-IEELKNNSKLKIDVNYYLSQQIHPVVTRLLEPI 1014
D +SYII + +A +RA + + L NN L ID N+YL P ++R+ E I
Sbjct: 915 DRVSYIIVKGVKGQAQYERAEDPLYVLDNN--LAIDYNHYLDAIKSP-LSRIFEVI 967
>sp|P52025|DPOL_METVO DNA polymerase OS=Methanococcus voltae GN=pol PE=3 SV=1
Length = 824
Score = 163 bits (412), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 140/485 (28%), Positives = 232/485 (47%), Gaps = 86/485 (17%)
Query: 560 IRITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEANKGK 619
I + + L T S+ EFLLL E++ + P++ + +E
Sbjct: 376 IMFSRIVNQPLYDTSRMNSSQMVEFLLLKRSFEQNMISPNRPSSSSYRE----------- 424
Query: 620 GRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTL 679
R K +Y GG V EP KG + I+ +DF SLYPSI+ +NI S T +
Sbjct: 425 -RAKFSYEGGYVREPLKGIQED-IVSLDFMSLYPSILISHNI------------SPETVI 470
Query: 680 CEYLPEHQVDTGILPSEIKKLVESRRQVKALMK---QPNLSSDLLMQYDIRQKALKLTAN 736
E ++ GI+P + +L+ R+ +K L+K Q N + + + QK++K+ AN
Sbjct: 471 YEEKERENMELGIIPKTLNELLSRRKHIKMLLKDKIQKNEFDEEYSRLEHEQKSIKVLAN 530
Query: 737 SMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVND 796
S YG L FP +R+++ A +VT GR+ + T E ++VIY DTD D
Sbjct: 531 SHYGYLAFPMARWYSDKCAEMVTGLGRKYIQETIEKAEEFGFKVIYADTDGFYAKW---D 587
Query: 797 YDSVFKIGNQIKSECNKLY--------------------------KQLELDIDGVYKYML 830
YD + K + + +KL + +EL+ +G +K L
Sbjct: 588 YDKLQKGKKEENDKSDKLSNLPKLSKEELIILTKKFLKGINEELPEGMELEFEGHFKRGL 647
Query: 831 LLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDY 890
+ KKKYA + +G ++ +KG++VVRRDWS +A + + VI +L++ D
Sbjct: 648 FVTKKKYALIE----DDGHIV----VKGLEVVRRDWSNIAKDTQQAVIRALLED---GDV 696
Query: 891 SLDDR-LQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLN 949
+L + ++N +++KK D ++ L I QLTK EEY + PH++VA ++
Sbjct: 697 NLAKKIIKNTIDNLKKGNIDKND-------LLIHTQLTKNIEEY--KSTAPHIEVAKKIK 747
Query: 950 NTNSKKLKQGDTISYIICEDGTSEAATQRAYNIEELKNNSKLKIDVNYYLSQQIHPVVTR 1009
++ GD ISYII + S + ++RA +E + D+NYY+ Q+ P V R
Sbjct: 748 QRGD-SVRVGDVISYIIVK--GSRSISERAELLEYAGD-----YDINYYIDNQVLPPVIR 799
Query: 1010 LLEPI 1014
++E +
Sbjct: 800 IMESL 804
>sp|P28340|DPOD1_HUMAN DNA polymerase delta catalytic subunit OS=Homo sapiens GN=POLD1 PE=1
SV=2
Length = 1107
Score = 163 bits (412), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 144/489 (29%), Positives = 236/489 (48%), Gaps = 65/489 (13%)
Query: 552 VQCNQMEKIRITNV-CGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGE 610
V N +E R+T V +LSR G + + LL A HE ++P K EG
Sbjct: 528 VLVNAVEMARVTGVPLSYLLSR---GQQVKVVSQLLRQAMHE-GLLMP-----VVKSEGG 578
Query: 611 ETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI---- 666
E Y+G V+EP KG+YD I +DF+SLYPSI+ +N+C+TT+
Sbjct: 579 ED-------------YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPG 625
Query: 667 ---PVRMLQDSDI-TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLM 722
+ + +D I T + + V G+LP ++ L+ +R++ KA + + +D L
Sbjct: 626 TAQKLGLTEDQFIRTPTGDEFVKTSVRKGLLPQILENLLSARKRAKAELAK---ETDPLR 682
Query: 723 Q--YDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE------ 774
+ D RQ ALK++ANS+YG G + ++ VT GR+++ TK LVE
Sbjct: 683 RQVLDGRQLALKVSANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVESKYTVE 742
Query: 775 ---NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVYKYML 830
+ + +V+YGDTDS+M V+ +G + + + + L+ + VY L
Sbjct: 743 NGYSTSAKVVYGDTDSVMCRFGVSSVAEAMALGREAADWVSGHFPSPIRLEFEKVYFPYL 802
Query: 831 LLKKKKYAALSISKLSNG--KMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYT 888
L+ KK+YA L S + +M C KG++ VRRD L + + ++L
Sbjct: 803 LISKKRYAGLLFSSRPDAHDRMDC----KGLEAVRRDNCPLVANLVTASLRRLL------ 852
Query: 889 DYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRL 948
+D + H + + +DL + ++ L ITK+LT+A +Y ++A HV++A R+
Sbjct: 853 ---IDRDPEGAVAHAQDVISDLLCNRIDISQLVITKELTRAASDYAGKQA--HVELAERM 907
Query: 949 NNTNSKKLKQ-GDTISYIICEDGTSEAATQRAYNIEELKNNSKLKIDVNYYLSQQIHPVV 1007
+ GD + Y+I AA ++ + + +S L ID YYL QQ+ +
Sbjct: 908 RKRDPGSAPSLGDRVPYVIISAAKGVAAYMKSEDPLFVLEHS-LPIDTQYYLEQQLAKPL 966
Query: 1008 TRLLEPIEG 1016
R+ EPI G
Sbjct: 967 LRIFEPILG 975
>sp|P46588|DPOD_CANAX DNA polymerase delta catalytic subunit OS=Candida albicans GN=POL3
PE=3 SV=2
Length = 1038
Score = 162 bits (409), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 126/412 (30%), Positives = 214/412 (51%), Gaps = 42/412 (10%)
Query: 626 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT------IPVRMLQDSDITTL 679
Y G V+EP++G+YD I +DF+SLYPSI+ +N+C+TT I L + D T
Sbjct: 516 YEGATVIEPERGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLNKNSIKAFGLTEDDYTKT 575
Query: 680 --CEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPN--LSSDLLMQYDIRQKALKLTA 735
+Y + GILP+ + +L+ +R++ KA +K+ D+L + RQ ALK++A
Sbjct: 576 PNGDYFVHSNLRKGILPTILDELLTARKKAKADLKKETDPFKKDVL---NGRQLALKISA 632
Query: 736 NSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN---------LNYEVIYGDTD 786
NS+YG G + +++ VTA GRE++ TK+ V+ + +VIYGDTD
Sbjct: 633 NSVYGFTGATVGKLPCLAISSSVTAFGREMIEKTKNEVQEYYSKKNGHPYDAKVIYGDTD 692
Query: 787 SLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVYKYMLLLKKKKYAALSISKL 845
S+M+ D ++ K+G + + + +K ++L+ + VY LL+ KK+YA L ++
Sbjct: 693 SVMVKFGYQDLETCMKLGEEAANYVSTKFKNPIKLEFEKVYFPYLLINKKRYAGLYWTR- 751
Query: 846 SNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKK 905
+ + KG++ VRRD +L V+ IL+E+ + +K+
Sbjct: 752 --PEKFDKMDTKGIETVRRDNCRLVQNVITKVLEFILEERD---------VPKAQRFVKQ 800
Query: 906 IRTDLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQ-GDTISY 964
DL + L+ L ITK +K +Y+ ++A HV++A R+ + GD ++Y
Sbjct: 801 TIADLLQNRIDLSQLVITKAYSK--HDYSAKQA--HVELAERMRKRDPGSAPTLGDRVAY 856
Query: 965 IICEDGTSEAATQRAYNIEELKNNSKLKIDVNYYLSQQIHPVVTRLLEPIEG 1016
+I + G + + + L+N+ L IDV YYL QQ+ + R+ PI G
Sbjct: 857 VIIKTGGDKNYEKSEDPLYVLENS--LPIDVKYYLDQQLTKPLERIFIPILG 906
>sp|O93746|DPOL2_AERPE DNA polymerase 2 OS=Aeropyrum pernix (strain ATCC 700893 / DSM 11879
/ JCM 9820 / NBRC 100138 / K1) GN=polB PE=3 SV=3
Length = 803
Score = 161 bits (408), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 119/396 (30%), Positives = 207/396 (52%), Gaps = 38/396 (9%)
Query: 621 RKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI--PVRMLQDSDITT 678
R + Y+G +VL PK G ++ I ++DF S+YP+I+ +YN+ T+ P + ++ T
Sbjct: 416 RSEGRYAGAIVLRPKPGVHED-IAVLDFASMYPNIMVKYNVGPDTLVRPGEEYGEEEVYT 474
Query: 679 LCEYLPE-HQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANS 737
E + + G +++ + RRQ+++ MK+ S D RQKA+KL AN+
Sbjct: 475 APEVGHKFRKSPPGFFKKILERFLSWRRQIRSEMKKHPPDSPEYKLLDERQKAIKLLANA 534
Query: 738 MYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDY 797
YG +G+P++R++ + A VTA GR I+ L EVIYGDTDSL + ND
Sbjct: 535 SYGYMGWPHARWYCRECAEAVTAWGRSIIRTAIRKAGELGLEVIYGDTDSLFVK---NDP 591
Query: 798 DSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLK-KKKYAALSISKLSNGKMICSQEI 856
+ V ++ ++ E ++ +D VY+ + + KK+Y L++ +GK+ ++
Sbjct: 592 EKVERLIRFVEEELG-----FDIKVDKVYRRVFFTEAKKRYVGLTV----DGKI----DV 638
Query: 857 KGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVP 916
G + VR DWS+LA E +F +++I+ + D ++ D ++NI E +++ + D+
Sbjct: 639 VGFEAVRGDWSELAKET-QFKVAEIVLKTGSVDEAV-DYVRNIIEKLRRGQVDMRK---- 692
Query: 917 LTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQGDTISYIICEDGTSEAAT 976
L I K LT+ P Y R+ PHV AL L K++ G I Y++ +
Sbjct: 693 ---LVIWKTLTRPPSMYEARQ--PHVTAAL-LMERAGIKVEPGAKIGYVVTKGSGPLYTR 746
Query: 977 QRAYNIEELKNNSKLKIDVNYYLSQQIHPVVTRLLE 1012
+ Y + SK ++DV YY+ +Q+ P R+L+
Sbjct: 747 AKPYFM-----ASKEEVDVEYYVDKQVVPAALRILQ 777
>sp|P0CL77|DPOL_PYRAB DNA polymerase 1 OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=polI
PE=1 SV=1
Length = 771
Score = 151 bits (381), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 129/397 (32%), Positives = 205/397 (51%), Gaps = 45/397 (11%)
Query: 625 AYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDIT-----TL 679
+Y GG V EP+KG ++ I+ +DF SLYPSII +N+ T+ ++ D+
Sbjct: 384 SYEGGYVKEPEKGLWEG-IVSLDFRSLYPSIIITHNVSPDTLNRENCKEYDVAPQVGHRF 442
Query: 680 CEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPN--LSSDLLMQYDIRQKALKLTANS 737
C+ P G +PS + L+E R+++K MK+ + LL D RQ+A+K+ ANS
Sbjct: 443 CKDFP------GFIPSLLGNLLEERQKIKKRMKESKDPVEKKLL---DYRQRAIKILANS 493
Query: 738 MYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDY 797
YG G+ +R++ + A VTA GR+ + + +E+ ++V+Y DTD L + +
Sbjct: 494 YYGYYGYAKARWYCKECAESVTAWGRQYIDLVRRELESRGFKVLYIDTDGLYATIPGAKH 553
Query: 798 DSVFKIGNQIKSECN-KLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEI 856
+ + + + N KL LEL+ +G Y + KKKYA + GK++
Sbjct: 554 EEIKEKALKFVEYINSKLPGLLELEYEGFYARGFFVTKKKYALID----EEGKIVT---- 605
Query: 857 KGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVP 916
+G+++VRRDWS++A E V+ IL ++D+ ++ + E +K L +P
Sbjct: 606 RGLEIVRRDWSEIAKETQAKVLEAILKHG-----NVDEAVKIVKEVTEK----LSKYEIP 656
Query: 917 LTLLEITKQLTKAPEEYTDRKAL-PHVQVALRLNNTNSKKLKQGDTISYIICE-DGTSEA 974
L I +Q+T+ EY KA+ PHV VA RL K+K G I YI+ DG
Sbjct: 657 PEKLVIYEQITRPLSEY---KAIGPHVAVAKRL-AAKGVKVKPGMVIGYIVLRGDG---P 709
Query: 975 ATQRAYNIEELKNNSKLKIDVNYYLSQQIHPVVTRLL 1011
++RA IEE + K K D YY+ Q+ P V R+L
Sbjct: 710 ISKRAIAIEEF-DPKKHKYDAEYYIENQVLPAVERIL 745
>sp|P15436|DPOD_YEAST DNA polymerase delta catalytic subunit OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=POL3 PE=1 SV=4
Length = 1097
Score = 150 bits (380), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 127/445 (28%), Positives = 221/445 (49%), Gaps = 49/445 (11%)
Query: 626 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT---------IPVRMLQDSDI 676
Y G V+EP +G+YD I +DFNSLYPSI+ +N+C+TT + +++ +D I
Sbjct: 587 YEGATVIEPIRGYYDVPIATLDFNSLYPSIMMAHNLCYTTLCNKATVERLNLKIDEDYVI 646
Query: 677 TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPN--LSSDLLMQYDIRQKALKLT 734
T +Y + GILP + +L+ +R++ K ++ D+L + RQ ALK++
Sbjct: 647 TPNGDYFVTTKRRRGILPIILDELISARKRAKKDLRDEKDPFKRDVL---NGRQLALKIS 703
Query: 735 ANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYEVIYGDT 785
ANS+YG G + +++ VTA GR ++L TK+ V+ + V+YGDT
Sbjct: 704 ANSVYGFTGATVGKLPCLAISSSVTAYGRTMILKTKTAVQEKYCIKNGYKHDAVVVYGDT 763
Query: 786 DSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVYKYMLLLKKKKYAALSISK 844
DS+M+ D +G + + L+K + L+ + Y LL+ KK+YA L
Sbjct: 764 DSVMVKFGTTDLKEAMDLGTEAAKYVSTLFKHPINLEFEKAYFPYLLINKKRYAGLF--- 820
Query: 845 LSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMK 904
+N + KG+ VRRD L S V+ +IL E+ ++D L + E +
Sbjct: 821 WTNPDKFDKLDQKGLASVRRDSCSLVSIVMNKVLKKILIER-----NVDGALAFVRETI- 874
Query: 905 KIRTDLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQGDTISY 964
D+ + V ++ L I+K L AP YT+ + PH +A R+ GD + Y
Sbjct: 875 ---NDILHNRVDISKLIISKTL--AP-NYTNPQ--PHAVLAERMKRREGVGPNVGDRVDY 926
Query: 965 IICEDGTSEAATQRAYN-IEELKNNSKLKIDVNYYLSQQIHPVVTRLLEPIEG---TDAV 1020
+I G ++ RA + + L+NN +++D YYL+ Q+ + ++ PI G + +
Sbjct: 927 VII--GGNDKLYNRAEDPLFVLENN--IQVDSRYYLTNQLQNPIISIVAPIIGDKQANGM 982
Query: 1021 RIAECLGLDTSLYRSQIKESIQQSE 1045
+ + + ++T + + I++ E
Sbjct: 983 FVVKSIKINTGSQKGGLMSFIKKVE 1007
>sp|Q9HH06|DPOL_PYRGL DNA polymerase OS=Pyrococcus glycovorans GN=pol PE=3 SV=1
Length = 775
Score = 150 bits (378), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 130/397 (32%), Positives = 201/397 (50%), Gaps = 42/397 (10%)
Query: 625 AYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITT-----L 679
+Y+GG V EP+KG ++ + L DF SLYPSII +N+ T+ ++ D+
Sbjct: 384 SYAGGYVKEPEKGLWEGLVSL-DFRSLYPSIIITHNVSPDTLNREGCREYDVAPEVKHKF 442
Query: 680 CEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMY 739
C+ P G +PS +K+L++ R+++K MK + M D RQ+A+K+ ANS Y
Sbjct: 443 CKDFP------GFIPSLLKRLLDERQEIKRKMKASKDPIEKKM-LDYRQRAIKILANSYY 495
Query: 740 GCLGFPNSRFFAQPLAALVTAKGRE-ILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYD 798
G G+ +R++ + A VTA GRE I K L E ++V+Y DTD L + +
Sbjct: 496 GYYGYAKARWYCKECAESVTAWGREYIEFVRKELEEKFGFKVLYIDTDGLYATIPGAKPE 555
Query: 799 SVFKIGNQIKSECN-KLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIK 857
+ + + N KL LEL+ +G Y + KKKYA + GK+I +
Sbjct: 556 EIKRKALEFVEYINAKLPGLLELEYEGFYVRGFFVTKKKYALID----EEGKIIT----R 607
Query: 858 GVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPL 917
G+++VRRDWS++A E V+ IL + ++ + +K++ L +P
Sbjct: 608 GLEIVRRDWSEIAKETQAKVLEAILKHGN---------VEEAVKIVKEVTEKLSKYEIPP 658
Query: 918 TLLEITKQLTKAPEEYTDRKAL-PHVQVALRLNNTNSKKLKQGDTISYIICE-DGTSEAA 975
L I +Q+T+ EY KA+ PHV VA RL K++ G I YI+ DG
Sbjct: 659 EKLVIYEQITRPLHEY---KAIGPHVAVAKRL-AARGVKVRPGMVIGYIVLRGDG---PI 711
Query: 976 TQRAYNIEELKNNSKLKIDVNYYLSQQIHPVVTRLLE 1012
++RA EE + K K D YY+ Q+ P V R+LE
Sbjct: 712 SKRAILAEEF-DPRKHKYDAEYYIENQVLPAVLRILE 747
>sp|O29753|DPOL_ARCFU DNA polymerase OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 /
DSM 4304 / JCM 9628 / NBRC 100126) GN=pol PE=3 SV=1
Length = 781
Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 119/430 (27%), Positives = 205/430 (47%), Gaps = 54/430 (12%)
Query: 608 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP 667
E ++ GE +Y G VLEP++G ++ + +DF S+YPSI+ +NI T
Sbjct: 373 EAKKIGEIAPNPPEHAESYEGAFVLEPERGLHEN-VACLDFASMYPSIMIAFNISPDTYG 431
Query: 668 VRMLQDSDITTLCEYLPE-----HQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLM 722
R C PE + G ++ L+E RR++K +K + S
Sbjct: 432 CR--------DDCYEAPEVGHKFRKSPDGFFKRILRMLIEKRRELKVELKNLSPESSEYK 483
Query: 723 QYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIY 782
DI+Q+ LK+ NS YG +G+ +R++ P A TA GR + + + E++ ++V+Y
Sbjct: 484 LLDIKQQTLKVLTNSFYGYMGWNLARWYCHPCAEATTAWGRHFIRTSAKIAESMGFKVLY 543
Query: 783 GDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSI 842
GDTDS+ ++ + V ++ +++ E +++++D Y + ++KK+YA L+
Sbjct: 544 GDTDSIFVTKAGMTKEDVDRLIDKLHEEL-----PIQIEVDEYYSAIFFVEKKRYAGLT- 597
Query: 843 SKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEH 902
+G+++ +KG++V R DW +LA + + VI IL E++ +
Sbjct: 598 ---EDGRLV----VKGLEVRRGDWCELAKKVQREVIEVILKEKN---------PEKALSL 641
Query: 903 MKKIRTDLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQGDTI 962
+K + + G V L + I K LTK P +Y +A HV+ AL+ I
Sbjct: 642 VKDVILRIKEGKVSLEEVVIYKGLTKKPSKYESMQA--HVKAALKAREMGI-IYPVSSKI 698
Query: 963 SYIICEDGTSEAATQRAYNIE----------ELKNNSKL---KIDVNYYLSQQIHPVVTR 1009
Y+I + S RAY I+ +K S + K+D +YY+ QI P V R
Sbjct: 699 GYVIVK--GSGNIGDRAYPIDLIEDFDGENLRIKTKSGIEIKKLDKDYYIDNQIIPSVLR 756
Query: 1010 LLEPIEGTDA 1019
+LE T+A
Sbjct: 757 ILERFGYTEA 766
>sp|P0CL76|DPOL_PYRAY DNA polymerase 1 OS=Pyrococcus abyssi GN=polI PE=1 SV=1
Length = 771
Score = 148 bits (374), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 129/397 (32%), Positives = 204/397 (51%), Gaps = 45/397 (11%)
Query: 625 AYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDIT-----TL 679
+Y GG V EP+KG ++ I+ +DF SLYPSII +N+ T+ ++ D+
Sbjct: 384 SYEGGYVKEPEKGLWEG-IVSLDFRSLYPSIIITHNVSPDTLNRENCKEYDVAPQVGHRF 442
Query: 680 CEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPN--LSSDLLMQYDIRQKALKLTANS 737
C+ P G +PS + L+E R+++K MK+ + LL D RQ+A+K+ ANS
Sbjct: 443 CKDFP------GFIPSLLGNLLEERQKIKKRMKESKDPVEKKLL---DYRQRAIKILANS 493
Query: 738 MYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDY 797
YG G+ +R++ + A VTA GR+ + + +E+ ++V+Y DTD L +
Sbjct: 494 YYGYYGYAKARWYCKECAESVTAWGRQYIDLVRRELESSGFKVLYIDTDGLYATIPGAKP 553
Query: 798 DSVFKIGNQIKSECN-KLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEI 856
+ + + + N KL LEL+ +G Y + KKKYA + GK++
Sbjct: 554 NEIKEKALKFVEYINSKLPGLLELEYEGFYARGFFVTKKKYALID----EEGKIVT---- 605
Query: 857 KGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVP 916
+G+++VRRDWS++A E V+ IL ++D+ ++ + E +K L +P
Sbjct: 606 RGLEIVRRDWSEIAKETQAKVLEAILKHG-----NVDEAVKIVKEVTEK----LSKYEIP 656
Query: 917 LTLLEITKQLTKAPEEYTDRKAL-PHVQVALRLNNTNSKKLKQGDTISYIICE-DGTSEA 974
L I +Q+T+ EY KA+ PHV VA RL K+K G I YI+ DG
Sbjct: 657 PEKLVIYEQITRPLSEY---KAIGPHVAVAKRL-AAKGVKVKPGMVIGYIVLRGDG---P 709
Query: 975 ATQRAYNIEELKNNSKLKIDVNYYLSQQIHPVVTRLL 1011
++RA IEE + K K D YY+ Q+ P V R+L
Sbjct: 710 ISKRAIAIEEF-DPKKHKYDAEYYIENQVLPAVERIL 745
>sp|Q54N97|DPOD1_DICDI DNA polymerase delta catalytic subunit OS=Dictyostelium discoideum
GN=pold1 PE=3 SV=1
Length = 1104
Score = 147 bits (372), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 212/419 (50%), Gaps = 48/419 (11%)
Query: 618 GKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI----PVRMLQD 673
GKG K + G +V+EP GFYD I +DF SLYPSI+ +N+C++T+ + L
Sbjct: 582 GKGEK---FQGAIVIEPTPGFYDTPIATLDFTSLYPSIMMAHNLCYSTLLSAEEAKKLPP 638
Query: 674 SDITT--LCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQ---PNLSSDLLMQYDIRQ 728
TT ++ + G+LP +++L+ +R++ K +K P + L D RQ
Sbjct: 639 EIYTTTPFGDHFIKSDTKKGLLPRILEELLSARKKAKDELKNEKDPFKRAVL----DGRQ 694
Query: 729 KALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENL---------NYE 779
ALK++ANS+YG G + ++ VT+ GRE+L TK +VE +
Sbjct: 695 LALKISANSVYGFTGARVGKLPCLEISRSVTSFGREMLDKTKKIVEERYTIANGYKHDAV 754
Query: 780 VIYGDTDSLMISCNVNDYDSVFKIG-NQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYA 838
+IYGDTDS+M+ V ++G + K + + LD + VY LL+ KKKYA
Sbjct: 755 IIYGDTDSVMVKFGVKTVAEAMEMGRDAAKFVTTTFIRPINLDFEKVYYPYLLMAKKKYA 814
Query: 839 ALSISKLS-NGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQ 897
L +K + +M ++KG+++VRRD L ++ +IL E+ L+
Sbjct: 815 GLYWTKPDIHDRM----DVKGLEMVRRDTCLLVRNVVSTILKKILIEKD---------LK 861
Query: 898 NIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLK 957
+ E+ K + +DL + L++L ITK L+K +Y + + H ++A ++ +
Sbjct: 862 SAEEYTKSVISDLLQNRLDLSMLVITKALSKT--QYKGK--VIHNELARKMRARDPATAP 917
Query: 958 Q-GDTISYIICEDGTSEAATQRAYN-IEELKNNSKLKIDVNYYLSQQIHPVVTRLLEPI 1014
GD + Y++ + ++A + + L++N + +D YYL +Q+ + R+ +PI
Sbjct: 918 NLGDRVPYVVIQGSKGAPIYEKAEDPLYALEHN--ILLDCQYYLDKQLKAPLIRIFKPI 974
>sp|O36363|DPOL_ALHV1 DNA polymerase catalytic subunit OS=Alcelaphine herpesvirus 1 (strain
C500) GN=9 PE=3 SV=1
Length = 1026
Score = 144 bits (363), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 139/512 (27%), Positives = 233/512 (45%), Gaps = 92/512 (17%)
Query: 557 MEKIRITNVC--GNVLSRTLMG-GRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETG 613
M I IT + N+ +R ++ G+ R LL A E+ Y+LP G +EG
Sbjct: 527 MTHIEITEIAKIANIPTRRVLSDGQQIRVFTCLLAAAQERDYILPMPVTGS--QEG---- 580
Query: 614 EANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI------- 666
Y G V+ P GFY+ ++++DF SLYPSIIQ +N+C++T+
Sbjct: 581 ------------YQGATVINPISGFYNTPVLVVDFASLYPSIIQAHNLCYSTLIKQQDLP 628
Query: 667 PVRMLQDSDITTL------CEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDL 720
L +D T ++ +H+ ++ +L S +K + R+ +K ++Q + +
Sbjct: 629 KFTNLTANDYETFMISGGPVHFVKKHKTES-LLASLLKTWLAKRKSIKKELEQCQ-DAKM 686
Query: 721 LMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYE- 779
D +Q A+K+T NS+YG G + +A VT +GR +L TK VEN+ E
Sbjct: 687 KTILDKQQLAIKVTCNSVYGFTGVASGMLPCLMIAETVTLQGRTMLEKTKQFVENVTVEY 746
Query: 780 ---------------------VIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLY--K 816
V+YGDTDSL I C D+V K G+ + S + +
Sbjct: 747 LQKICNFEVQCLPQHPNPKFRVVYGDTDSLFIKCEGFAMDTVIKFGDALASHTSSVLFAS 806
Query: 817 QLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKF 876
++L+ + V+K ++LL KK+Y + LSN K++ +KGVD+VR+ E +
Sbjct: 807 PIKLESEKVFKCLMLLTKKRYVGI----LSNNKIL----MKGVDLVRKTACVYVQEVTRA 858
Query: 877 VISQILDEQ---------SYTDYSLDDRLQNIHEHMKKI------RTDLDNGFVPLTLLE 921
V+ +L ++ SY+ + + + + +K I +DL + VP+ L
Sbjct: 859 VLELLLRDEEVKVAAQTLSYSPVANCFKTEPLLGFLKIIDILNQSYSDLKSNKVPVANLT 918
Query: 922 ITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQGDTISYIICEDG---TSEAATQR 978
+ +L+K EY LPH+ V +L N + + D ISY+ + S+ A
Sbjct: 919 YSTELSKPFTEYKTTN-LPHLAVYKKLAMRNEELPQIHDRISYVFVKSNGHLVSDMAEDP 977
Query: 979 AYNIEELKNNSKLKIDVNYYLSQQIHPVVTRL 1010
Y +K+ I ++Y + IH V L
Sbjct: 978 TY-----AEQNKIPIASDWYFDKIIHGVANIL 1004
>sp|Q7SIG7|DPOL_DESST DNA polymerase OS=Desulfurococcus sp. (strain Tok) GN=pol PE=1 SV=1
Length = 773
Score = 143 bits (361), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 132/438 (30%), Positives = 212/438 (48%), Gaps = 55/438 (12%)
Query: 583 EFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKF 642
E+ LL +E++ V P NK + E R+ +Y+GG V EP+KG ++
Sbjct: 354 EWFLLRKAYERNDVAP------NKPDERELA-------RRTESYAGGYVKEPEKGLWEN- 399
Query: 643 IILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDIT-----TLCEYLPEHQVDTGILPSEI 697
I+ +D+ SLYPSII +N+ T+ ++ D+ C+ P G +PS +
Sbjct: 400 IVYLDYKSLYPSIIITHNVSPDTLNREGCREYDVAPQVGHRFCKDFP------GFIPSLL 453
Query: 698 KKLVESRRQVKALMKQP--NLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLA 755
L+E R++VK MK + LL D RQ+A+K+ ANS YG + N+R++ + A
Sbjct: 454 GDLLEERQKVKKKMKATVDPIERKLL---DYRQRAIKILANSYYGYYAYANARWYCRECA 510
Query: 756 ALVTAKGREILLNT-KSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECN-K 813
VTA GR+ + T + + E ++V+Y DTD + D ++V + + N +
Sbjct: 511 ESVTAWGRQYIETTMREIEEKFGFKVLYADTDGFFATIPGADAETVKNKAKEFLNYINPR 570
Query: 814 LYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEA 873
L LEL+ +G Y+ + KKKYA + K+ +G+++VRRDWS++A E
Sbjct: 571 LPGLLELEYEGFYRRGFFVTKKKYAVID----EEDKITT----RGLEIVRRDWSEIAKET 622
Query: 874 GKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEEY 933
V+ IL ++ +K++ L VP L I +Q+T+ Y
Sbjct: 623 QARVLEAILKHGD---------VEEAVRIVKEVTEKLSRHEVPPEKLVIYEQITRDLRSY 673
Query: 934 TDRKALPHVQVALRLNNTNSKKLKQGDTISYIICEDGTSEAATQRAYNIEELKNNSKLKI 993
R PHV VA RL K++ G ISYI+ + G RA +E + +K +
Sbjct: 674 --RATGPHVAVAKRL-AARGIKIRPGTVISYIVLK-GPGRVG-DRAIPFDEF-DPAKHRY 727
Query: 994 DVNYYLSQQIHPVVTRLL 1011
D YY+ Q+ P V R+L
Sbjct: 728 DAEYYIENQVLPAVERIL 745
>sp|P30320|DPOL_PBCVN DNA polymerase OS=Paramecium bursaria Chlorella virus NY2A GN=DPO
PE=3 SV=1
Length = 913
Score = 136 bits (342), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 119/419 (28%), Positives = 199/419 (47%), Gaps = 52/419 (12%)
Query: 626 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTL--CEYL 683
Y G VL+ KKG Y I +DF SLYPSII+ +N+ P ++ D L EY
Sbjct: 464 YEGATVLDAKKGAYFTSIAALDFASLYPSIIRAHNMS----PETLVMDKRFENLPGIEYY 519
Query: 684 -----------PEHQVDTG----ILPSEIKKLVESRRQVKALMKQPNLSSDLLMQ--YDI 726
P+ +TG ++P+ + L + R+Q K M + + D + YD
Sbjct: 520 EIETGLGTFKYPQKNDETGEGQGVVPALLDDLAKFRKQAKKHMAEAKKNDDEFREALYDA 579
Query: 727 RQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENL--NYEVIYGD 784
+Q++ K+ NS+YG LG P+AA VTA GR+++ +T V L EVIYGD
Sbjct: 580 QQRSYKIVMNSVYGFLGASRGFIPCVPIAASVTATGRKMIEHTAKRVTELLPGSEVIYGD 639
Query: 785 TDSLMISC-----NVNDYDSVFKIGNQIKSECNKLYKQL-ELDIDGVYKYMLLLKKKKYA 838
TDS+MI ++D D FK+ + E K +K +L+ + +Y +L KK+YA
Sbjct: 640 TDSVMIRMKLPDDKIHDMDEQFKMAKWLAGEITKDFKAPNDLEFEKIYYPYILYSKKRYA 699
Query: 839 ALSISKLS-NGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQ 897
A+ GK+ ++KG+ +VRRD+S + E K + IL ++ D
Sbjct: 700 AIKFEDPDEKGKV----DVKGLALVRRDFSPITREILKESLDTILFKK--------DTPT 747
Query: 898 NIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLK 957
+ E ++ IR LDN + P+ ++K L + + PH+ V+ ++ +
Sbjct: 748 AVTETVECIRKVLDNEY-PMEKFTMSKTLKTGYKN----ECQPHLHVSNKIFERTGFPVP 802
Query: 958 QGDTISYIICEDGTSEAATQRAYNIEE--LKNNSKLKIDVNYYLSQQIHPVVTRLLEPI 1014
G + ++ ED T++++ E+ + L +D +Y+ Q+ + L EP+
Sbjct: 803 SGARVPFVYIED-KKNLDTKQSFRAEDPTFAQENDLIVDRLFYIEHQLMKPICSLFEPL 860
>sp|P52342|DPOL_HHV7J DNA polymerase OS=Human herpesvirus 7 (strain JI) GN=U38 PE=3 SV=1
Length = 1012
Score = 134 bits (337), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 135/454 (29%), Positives = 210/454 (46%), Gaps = 67/454 (14%)
Query: 615 ANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI-----PVR 669
N KG++ Y G VLEPK G+Y ++ DF SLYPSI+ +N+C++T+ V
Sbjct: 539 TNFNKGKENVGYKGATVLEPKIGYYATPTVVFDFQSLYPSIMMAHNLCYSTLVVDENAVI 598
Query: 670 MLQDSDITTLCEYLPEHQ-----VDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQY 724
L DI T+ H+ V IL S +KK ++ R++VK MK N + + M
Sbjct: 599 GLHADDILTVHVGPVTHRFVKKTVRESILASLLKKWLDKRKEVKMQMKMCN-NPVMEMLL 657
Query: 725 DIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNY------ 778
D +Q ALK T NS+YG G +S +AA VT GRE+L T V++ Y
Sbjct: 658 DKKQLALKTTCNSVYGVTGATHSLLPCVAIAASVTCLGREMLCKTVDYVDSAMYSDTFFI 717
Query: 779 ----------------EVIYGDTDSLMISCNVNDYDSVFKIGNQIKSEC-NKLYKQ-LEL 820
EVIYGDTDSL ++ ++ +I I S N L+K ++L
Sbjct: 718 EKFGLTRGDFSGTFGIEVIYGDTDSLFVTFKNVCPKALKRIAPSIASHITNTLFKHPIKL 777
Query: 821 DIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQ 880
+ + + ++L+ KK+Y I KL + ++ KGV++VR+ K +I
Sbjct: 778 EFEKILFPLILICKKRY----IGKLDDATLV----FKGVELVRKTSCDFVKVVVKDIIDL 829
Query: 881 I---LDEQSYTDYSLDDRLQNIHEH---------MKKIRTDLDNGF---VPLTLLEITKQ 925
+ +D Q + + +Q I+E+ +KK+ D F V + L ++
Sbjct: 830 LFWDVDVQKSAEKLSNMTIQEIYENGVPDGIQKIIKKLCDARDALFLNRVNIKSLVLSSV 889
Query: 926 LTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQGDTISYIICEDGTSEAATQRAYNIEE- 984
L+K Y + LPH+ V RL + GD + YI+ + T Y + E
Sbjct: 890 LSKDISAY-KQANLPHLAVVKRLAQRKEELPNIGDRVMYILIAPTETVKKTFHNYELAED 948
Query: 985 ----LKNNSKLKIDVNYYLSQQIHPVVTRLLEPI 1014
++NN LKI+ + Y +QI VT + PI
Sbjct: 949 PAYAIENN--LKINADKYF-EQIMKAVTNAISPI 979
>sp|P28858|DPOL_EHV1B DNA polymerase catalytic subunit OS=Equine herpesvirus 1 (strain
Ab4p) GN=30 PE=3 SV=1
Length = 1220
Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 118/471 (25%), Positives = 211/471 (44%), Gaps = 82/471 (17%)
Query: 598 PDKQYGKNKKEGE----ETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYP 653
PD G G E G G GR Y G VL+P GF+ +++ DF SLYP
Sbjct: 666 PDGVDGTPDAAGSGATSENGGGKPGVGRA-VGYQGAKVLDPVSGFHVDPVVVFDFASLYP 724
Query: 654 SIIQEYNICFTTIPVRMLQDSDITTLCEY-----------LPEHQVDTGILPSEIKKLVE 702
SIIQ +N+CFTT+ + + + + +Y + +L ++ +
Sbjct: 725 SIIQAHNLCFTTLALDEVDLAGLQPSVDYSTFEVGDQKLFFVHAHIRESLLGILLRDWLA 784
Query: 703 SRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKG 762
R+ V+A + P + + + D +Q A+K+ NS+YG G N +AA VT G
Sbjct: 785 MRKAVRA--RIPTSTPEEAVLLDKQQSAIKVICNSVYGFTGVANGLLPCLRIAATVTTIG 842
Query: 763 REILLNTKSLVEN-----------------------LNYEVIYGDTDSLMISCNVNDYDS 799
R++LL T+ V + + VIYGDTDS+ I Y+
Sbjct: 843 RDMLLKTRDYVHSRWATRELLEDNFPGAIGFRNHKPYSVRVIYGDTDSVFIKFVGLTYEG 902
Query: 800 VFKIGNQIKSECNK-LYKQ-LELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIK 857
V ++G+ + + + L++ ++L+ + ++ +LL+ KKKY I ++ GKM+ +K
Sbjct: 903 VSELGDAMSRQISADLFRAPIKLECEKTFQRLLLITKKKY----IGVINGGKML----MK 954
Query: 858 GVDVVRRDWSQLASEAGKFVISQIL-DEQSYTDYS----------LDDRLQNIHEHMKKI 906
GVD+VR++ + + ++ +L DE T + + L + + ++
Sbjct: 955 GVDLVRKNNCSFINLYARHLVDLLLYDEDVATAAAEVTDVPPAEWVGRPLPSGFDKFGRV 1014
Query: 907 RTDLDNGFVPLTL----LEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQGDTI 962
+ N L +T +L+++PE YT+++ LPH+ V +L N + + I
Sbjct: 1015 LVEAYNRITAPNLDVREFVMTAELSRSPESYTNKR-LPHLTVYFKLAMRNEELPSVKERI 1073
Query: 963 SYIICEDGTSEAATQRAYNIEELKNNSKLKIDVNYYLSQQIHPVVTRLLEP 1013
Y+I +EAA + A + ++ ++ +PVVT+ P
Sbjct: 1074 PYVIV--AQTEAAEREAGVVNSMRGTAQ-------------NPVVTKTARP 1109
>sp|Q6S6P1|DPOL_EHV1V DNA polymerase catalytic subunit OS=Equine herpesvirus 1 (strain
V592) GN=30 PE=3 SV=1
Length = 1220
Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 120/474 (25%), Positives = 211/474 (44%), Gaps = 88/474 (18%)
Query: 598 PDKQYGKNKKEGE----ETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYP 653
PD G G E G G GR Y G VL+P GF+ +++ DF SLYP
Sbjct: 666 PDGVDGTPDAAGSGATSENGGGKPGVGRA-VGYQGAKVLDPVSGFHVDPVVVFDFASLYP 724
Query: 654 SIIQEYNICFTTIPVRMLQDSDITTLCE--------------YLPEHQVDTGILPSEIKK 699
SIIQ +N+CFTT+ L + D+ L + + +L ++
Sbjct: 725 SIIQAHNLCFTTL---ALDEVDLAGLQPSVNYSTFEVGDQKLFFVHAHIRESLLGILLRD 781
Query: 700 LVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVT 759
+ R+ V+A + P + + + D +Q A+K+ NS+YG G N +AA VT
Sbjct: 782 WLAMRKAVRA--RIPTSTPEEAVLLDKQQSAIKVICNSVYGFTGVANGLLPCLRIAATVT 839
Query: 760 AKGREILLNTKSLVEN-----------------------LNYEVIYGDTDSLMISCNVND 796
GR++LL T+ V + + VIYGDTDS+ I
Sbjct: 840 TIGRDMLLKTRDYVHSRWATRELLEDNFPGAIGFRNHKPYSVRVIYGDTDSVFIKFVGLT 899
Query: 797 YDSVFKIGNQIKSECNK-LYKQ-LELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQ 854
Y+ V ++G+ + + + L++ ++L+ + ++ +LL+ KKKY I ++ GKM+
Sbjct: 900 YEGVSELGDAMSRQISADLFRAPIKLECEKTFQRLLLITKKKY----IGVINGGKML--- 952
Query: 855 EIKGVDVVRRDWSQLASEAGKFVISQIL-DEQSYTDYS----------LDDRLQNIHEHM 903
+KGVD+VR++ + + ++ +L DE T + + L + +
Sbjct: 953 -MKGVDLVRKNNCSFINLYARHLVDLLLYDEDVATAAAKVTDVPPAEWVGRPLPSGFDKF 1011
Query: 904 KKIRTDLDNGFVPLTL----LEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQG 959
++ + N L +T +L+++PE YT+++ LPH+ V +L N +
Sbjct: 1012 GRVLVEAYNRITAPNLDVREFVMTAELSRSPESYTNKR-LPHLTVYFKLAMRNEELPSVK 1070
Query: 960 DTISYIICEDGTSEAATQRAYNIEELKNNSKLKIDVNYYLSQQIHPVVTRLLEP 1013
+ I Y+I +EAA + A + ++ ++ +PVVT+ P
Sbjct: 1071 ERIPYVIV--AQTEAAEREAGVVNSMRGTAQ-------------NPVVTKTARP 1109
>sp|P30321|DPOL_PBCV1 DNA polymerase OS=Paramecium bursaria Chlorella virus 1 GN=DPO PE=3
SV=2
Length = 913
Score = 131 bits (329), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 117/416 (28%), Positives = 201/416 (48%), Gaps = 46/416 (11%)
Query: 626 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNIC---------FTTIPVRMLQDSDI 676
Y G VL+ KKG Y I +DF SLYPSII+ +N+ F +P + +
Sbjct: 464 YEGATVLDAKKGAYFTPIAALDFASLYPSIIRAHNMSPETLVMEKRFENVPGVEYYEIE- 522
Query: 677 TTLCEYLPEHQVD-----TGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQ--YDIRQK 729
T L ++ + D G++P+ + L + R+ K M + + D + YD +Q+
Sbjct: 523 TGLGKFKYAQKNDETGEGQGVVPALLDDLAKFRKLAKKHMAEAKRNGDDFKEALYDAQQR 582
Query: 730 ALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNT-KSLVENL-NYEVIYGDTDS 787
+ K+ NS+YG LG P+AA VTA GR+++ +T K VE L EVIYGDTDS
Sbjct: 583 SFKVVMNSVYGFLGASKGFIPCVPIAASVTATGRKMIEHTAKRAVELLPGSEVIYGDTDS 642
Query: 788 LMISC-----NVNDYDSVFKIGNQIKSECNKLYKQL-ELDIDGVYKYMLLLKKKKYAALS 841
+M+ V+D D FK+ + E K ++ +L+ + +Y +L KK+YAA+
Sbjct: 643 VMVKMKLPDDKVHDMDEQFKMAKWLAGEITKDFRAPNDLEFEKIYYPYILYSKKRYAAVK 702
Query: 842 ISKLS-NGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIH 900
+ GK+ ++KG+ +VRRD+S + + K + IL ++ D +
Sbjct: 703 FEEPDEKGKV----DVKGLALVRRDFSPITRDILKESLDTILYKK--------DTPTAVS 750
Query: 901 EHMKKIRTDLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQGD 960
E +++IR LDN + P+ ++K L + PH+ VA ++ + G
Sbjct: 751 ETLERIRKVLDNEY-PMEKFMMSKLLKTG----YKNECQPHLHVANKIYERTGFPVPSGA 805
Query: 961 TISYIICEDGTSEAATQRAYNIEE--LKNNSKLKIDVNYYLSQQIHPVVTRLLEPI 1014
+ ++ ED + Q ++ E+ ++ L +D +Y+ Q+ + L EP+
Sbjct: 806 RVPFVYIEDKKNPDIKQ-SFKAEDPTFAQDNGLIVDRLFYIEHQLLKPICSLFEPL 860
>sp|Q6UDK1|DPOL_PSHV1 DNA polymerase catalytic subunit OS=Psittacid herpesvirus 1 (isolate
Amazon parrot/-/97-0001/1997) GN=UL30 PE=3 SV=1
Length = 1081
Score = 128 bits (321), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 126/503 (25%), Positives = 222/503 (44%), Gaps = 73/503 (14%)
Query: 556 QMEKIRITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEA 615
ME + + L+R + G+ R LL + VLP+K ++
Sbjct: 542 HMELSAVAQLACITLTRAVFDGQQVRVFTCLLQRARKIGVVLPEKS---DRFTFSAHAAG 598
Query: 616 NKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI-----PVRM 670
++ G + Y G VL+P GF+ +++ DF SLYPSIIQ N+C++T+ +
Sbjct: 599 DQDDGGRSVGYQGAKVLDPDVGFHVNPVMVFDFASLYPSIIQSNNLCYSTMTHNPAAIAH 658
Query: 671 LQDS------DITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSS--DLLM 722
L++ ++ + V +L + + R KAL Q L++ D +
Sbjct: 659 LEEGTDYLRVEVQGRVFFFVREHVRRSLLAELLTDWLNMR---KALRAQIPLAATEDEKV 715
Query: 723 QYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE-------- 774
D++Q A+K+ NS+YG G N +AA VTA GR++LL TK +E
Sbjct: 716 LLDMQQIAIKVICNSVYGFTGVMNGMLPCLEVAATVTAIGRDMLLKTKQYIEENWREYSN 775
Query: 775 ---------------NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSE-CNKLYKQ- 817
+ VIYGDTDS+ +S + G+ + +E N L+++
Sbjct: 776 IRERFFPAMAHEGVPQYSVAVIYGDTDSVFVSFKGVPVACLVASGDAMAAEITNALFRRP 835
Query: 818 LELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFV 877
++L+ + V+ +L++ KKKY I + GKM+ ++GVD+VR+ + ++ K +
Sbjct: 836 VKLECEKVFTKLLMIAKKKY----IGVIHTGKMM----MRGVDMVRKSNCRFVNDTAKAL 887
Query: 878 ISQIL-DEQSYTDY---------SLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLT 927
++ + DE T +L L + +++ L + + + +T +L+
Sbjct: 888 LNLVFYDEDVATAAASSALVDVSALPRGLSKLGARVREAHAALSSPALDVRDFVMTSELS 947
Query: 928 KAPEEYTDRKALPHVQVALRLNNTNSKKLKQGDTISYIICEDGT-------SEAATQRAY 980
KAP+ Y K L H+ V + N + + D I Y+I G E T
Sbjct: 948 KAPKYYASSK-LAHLTVYRKKIARNEEPPQVKDRIEYVIIAPGQRIQGDPFREKETDLVS 1006
Query: 981 NIEELKN---NSKLKIDVNYYLS 1000
++ E N KL+++ +YY S
Sbjct: 1007 SLAEDPNWVTAHKLRLNADYYFS 1029
>sp|Q9P6L6|DPOZ_SCHPO DNA polymerase zeta catalytic subunit OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rev3 PE=3 SV=1
Length = 1480
Score = 128 bits (321), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 113/415 (27%), Positives = 193/415 (46%), Gaps = 49/415 (11%)
Query: 630 LVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI--PVRMLQ------------DSD 675
LV+EPK Y+ ++++DF SLYPSII YN+C++T PV+++ + +
Sbjct: 938 LVMEPKSDLYNNPVVVLDFQSLYPSIIIAYNLCYSTCLGPVKIVNGKVKLGFMFHSSNPN 997
Query: 676 ITTLCE-----------YLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQ- 723
I L + Y+ E+ V +L +++L+E+R VK MK + SD + +
Sbjct: 998 IVNLIKNDVYISPNGYAYVKEN-VRKSLLAKMLEELIETRNMVKRGMK--DCDSDYVNKV 1054
Query: 724 YDIRQKALKLTANSMYGCLGFPNS-RFFAQPLAALVTAKGREILLNTKSLVENLNY---E 779
+ RQ ALKL AN YG S R +A + GREIL + + L++ +
Sbjct: 1055 LNSRQLALKLIANVTYGYTSASFSGRMPCSEIADTIVETGREILSYSLEYINTLDFCHAK 1114
Query: 780 VIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVYKYMLLLKKKKYA 838
V+YGDTDSL + + F IG Q+ + + + L + +Y LL KK+Y
Sbjct: 1115 VVYGDTDSLFVELPGATKEQAFDIGQQLANNITSRFPSPIRLKFEKIYFPCFLLAKKRYV 1174
Query: 839 ALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQN 898
+S I E KG++ VRRD + + + + + + + + ++ QN
Sbjct: 1175 GFKFESVSQKAPIF--EAKGIETVRRDGTPVQQQLLRRCLEILFKTKDLS--TVKKEFQN 1230
Query: 899 I-HEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLK 957
+ ++ M +D F LE K+L+ AP P +A RL + ++
Sbjct: 1231 VCYQIMSGNVPVMDFCFSKEVRLEKYKELSTAP---------PGAVMARRLMTKDPRREP 1281
Query: 958 Q-GDTISYIICEDGTSEAATQRAYNIEELKNNSKLKIDVNYYLSQQIHPVVTRLL 1011
Q G+ + Y+I R+ EE ++S ++D+NYY++ + P + R L
Sbjct: 1282 QYGERVPYLIIAAAPGTTLANRSVAPEEFLSSSFSQLDINYYINNSLIPPLDRFL 1336
>sp|P24907|DPOL_SHV21 DNA polymerase OS=Saimiriine herpesvirus 2 (strain 11) GN=9 PE=3 SV=1
Length = 1009
Score = 127 bits (318), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 126/484 (26%), Positives = 218/484 (45%), Gaps = 80/484 (16%)
Query: 572 RTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEANKGKGRKKAAYSGGLV 631
R L G+ R LL A ++Y+LP + + N + G V
Sbjct: 517 RVLTDGQQIRVFSCLLAAARAENYILP------------VSNDVNAD------GFQGATV 558
Query: 632 LEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT-IPVRMLQD------SDI-TTLCEYL 683
+ P GFY+ ++++DF SLYPSIIQ +N+C++T IP L + SD T +
Sbjct: 559 INPIPGFYNNAVLVVDFASLYPSIIQAHNLCYSTLIPHHALHNYPHLKSSDYETFMLSSG 618
Query: 684 PEHQVDTGILPSEIKKLVE---SRRQV--KALMKQPNLSSDLLMQYDIRQKALKLTANSM 738
P H V I S + +L+ S+R+ + L + +L + ++ D +Q A+K+T N++
Sbjct: 619 PIHFVKKHIQASLLSRLLTVWLSKRKAIRQKLAECEDLDTKTIL--DKQQLAIKVTCNAV 676
Query: 739 YGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLN-------------------YE 779
YG G + +A VT +GR +L +K +E + +
Sbjct: 677 YGFTGVASGLLPCISIAETVTLQGRTMLEKSKIFIEAMTPDTLQEIVPHIVKHEPDAKFR 736
Query: 780 VIYGDTDSLMISCNVNDYDSVFKIGNQIKS-ECNKLYKQ-LELDIDGVYKYMLLLKKKKY 837
VIYGDTDSL + C D+V K G+ + + KL+ ++L+ + ++ +LLL KK+Y
Sbjct: 737 VIYGDTDSLFVECVGYSVDTVVKFGDFLAAFTSEKLFNAPIKLESEKTFQCLLLLAKKRY 796
Query: 838 AALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSY---------- 887
I LSN K++ +KGVD+VR+ + +++ IL +
Sbjct: 797 ----IGILSNDKLL----MKGVDLVRKTACKFVQNTSSKILNLILKDPEVKAAAQLLSTK 848
Query: 888 -TDYS----LDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHV 942
DY+ L D + + + + +L G VP+ L + +L++ Y LPH+
Sbjct: 849 DPDYAFREGLPDGFLKVIDILNESHKNLRTGQVPVEELTFSTELSRPISSYKTEN-LPHL 907
Query: 943 QVALRLNNTNSKKLKQGDTISYIICEDGTSEAATQRAYNIEELKNNSKLKIDVNYYLSQQ 1002
V ++ + + + D I Y+ TS + ++NN + +D+ Y +
Sbjct: 908 TVYKKIITRHEEPPQVHDRIPYVFVGKTTSCISNMAEDPTYTVQNNIPIAVDL--YFDKL 965
Query: 1003 IHPV 1006
IH V
Sbjct: 966 IHGV 969
>sp|P27172|DPOL_MUHVS DNA polymerase OS=Murid herpesvirus 1 (strain Smith) GN=UL54 PE=3
SV=1
Length = 1097
Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 119/458 (25%), Positives = 203/458 (44%), Gaps = 70/458 (15%)
Query: 612 TGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT------ 665
T E + Y G VLEP+ GF+ + + DF SLYPSII N+C++T
Sbjct: 589 TSEGENSNNSRTVGYQGATVLEPECGFHHVPVCVFDFASLYPSIIMSNNLCYSTLLVEGS 648
Query: 666 --IPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQ-PNLSSDLLM 722
+P + + +I C V +L + + + R+ V+ MKQ N ++M
Sbjct: 649 PEVPEKDVLRVEIGDQCHRFVRENVHRSLLAELLVRWLTQRKLVREAMKQCTNEMQRMIM 708
Query: 723 QYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN------- 775
D +Q ALK+T N+ YG G P+AA +T GR++LL T +E+
Sbjct: 709 --DKQQLALKVTCNAFYGFTGVAAGMLPCLPIAASITKIGRDMLLATAGHIEDRCNRPDF 766
Query: 776 ----------------LNYEVIYGDTDSLMISCNVNDYDSVFK-IGNQIKSECNKLYKQ- 817
L ++IYGDTDS+ + D +++ K +G + N L+K+
Sbjct: 767 LRTVLGLPPEAIDPEALRVKIIYGDTDSVFAAFYGIDKEALLKAVGALAANVTNALFKEP 826
Query: 818 LELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEI--KGVDVVRRDWSQLASEAGK 875
+ L+ + ++ ++++ KK+Y GK+ SQ + KGVD+VRR
Sbjct: 827 VRLEFEKMFVSLMMICKKRYI---------GKVHGSQNLSMKGVDLVRRTACGFVKAVVS 877
Query: 876 FVISQILDEQSYTD-------YSLDDRLQN--------IHEHMKKIRTDLDNGFVPLTLL 920
V+ + ++++ ++ + DD +N + + + R DL VP+ L
Sbjct: 878 DVLHMVFNDETVSEGTMKLSRMTFDDLKKNGIPCEFGPVVSRLCRARDDLHLKKVPVPEL 937
Query: 921 EITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQGDTISYIIC-EDGTSEAATQRA 979
++ L++ Y +K LPH+ V RL + GD + Y++ DG +
Sbjct: 938 TLSSVLSQELSCY-KQKNLPHLAVIRRLAARKEELPAVGDRVEYVLTLPDGCKKNVPN-- 994
Query: 980 YNIEELKNN---SKLKIDVNYYLSQQIHPVVTRLLEPI 1014
Y I E + +KL I+ Y +Q+ VT L P+
Sbjct: 995 YEIAEDPRHVVEAKLSINAEKYY-EQVVKAVTNTLMPV 1031
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.133 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 481,720,936
Number of Sequences: 539616
Number of extensions: 21427438
Number of successful extensions: 59429
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 610
Number of HSP's that attempted gapping in prelim test: 56591
Number of HSP's gapped (non-prelim): 2234
length of query: 1274
length of database: 191,569,459
effective HSP length: 129
effective length of query: 1145
effective length of database: 121,958,995
effective search space: 139643049275
effective search space used: 139643049275
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 67 (30.4 bits)