Your job contains 1 sequence.
>psy1361
QLVHHFVSEHRKWRVEELNVKEGKSTRARSACSSFCVGTQKMEGGRAKRQKIDKTNKFAA
FQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGRE
IFDDDIEDVPQKKEKHDKRKKNKNIQNPNAKGDIQKLLANMPVKKKKKEEVQLNNDDVLA
DLLSEVNTTIAPTLKLNTKTNEIVIPKEEPPAPTAKEYLANFSKPIKVEKKIEKPIKKEP
SPLKDEIKSNDSVMEVEMNVAEQSKEEPVDDGLWEQMQIDDWDNSQQTQDVLPEQAKVEL
QIEAIESQSIEEKVDVTNVESVSSAVELSTSPPPQVVEKKEHKCAEWEAIQTEPSTSEPQ
VHSRTADDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVI
VQNIDRKIYLLPRSEHLKTKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGV
PDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKSSFLENLLLERKIKGPSWLEFPEAEK
FPSRISWCKYEVQCNQMEKIRITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDK
QYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYN
ICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDL
LMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEV
IYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAAL
SISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIH
EHMKKIRTDLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQGD
TISYIICEDGTSEAATQRAYNIEELKNNSKLKIDVNYYLSQQIHPVVTRLLEPIEGTDAV
RIAECLGLDTSLYRSQIKESIQQSEENILGVGEAEEVKYQFCDKFEFTCMNPSCKQVNTV
EAPTRLSTHGVVFVLDECINPECKVPPYTYLPHLINKLSQDMNKYIVKYYEGWLKCEDPG
CSDLTRRCPLGLKTRLCTTCHKYKLHRVYTELQLYQQLSFFHYICDITKALTKSDTPSIK
FDSETYMGYCKMKQHVERFLESSAYNIVDLKKLFSCEEKQPKLSRGVEREHVTVAEGEGD
DYEFDFDLEYSDLS
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy1361
(1274 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|Q9DE46 - symbol:pola1 "DNA polymerase alpha cat... 1614 1.4e-244 3
ZFIN|ZDB-GENE-030114-9 - symbol:pola1 "polymerase (DNA di... 1618 1.1e-240 3
UNIPROTKB|F6Y1C9 - symbol:POLA1 "DNA polymerase" species:... 1609 1.3e-239 3
UNIPROTKB|A6NMQ1 - symbol:POLA1 "DNA polymerase" species:... 1602 2.7e-239 3
UNIPROTKB|P09884 - symbol:POLA1 "DNA polymerase alpha cat... 1602 2.7e-239 3
RGD|621816 - symbol:Pola1 "polymerase (DNA directed), alp... 1578 3.5e-239 4
UNIPROTKB|O89042 - symbol:Pola1 "DNA polymerase alpha cat... 1578 3.5e-239 4
MGI|MGI:99660 - symbol:Pola1 "polymerase (DNA directed), ... 1597 1.5e-238 3
UNIPROTKB|Q59J88 - symbol:Q59J88 "DNA polymerase" species... 1650 2.4e-238 3
UNIPROTKB|F1NR19 - symbol:POLA1 "DNA polymerase" species:... 1624 2.7e-235 3
UNIPROTKB|Q59J89 - symbol:Q59J89 "DNA polymerase" species... 1605 1.6e-230 2
UNIPROTKB|Q59J90 - symbol:Q59J90 "DNA polymerase" species... 1604 2.5e-230 3
UNIPROTKB|E2QVU2 - symbol:POLA1 "Uncharacterized protein"... 1413 6.3e-219 3
FB|FBgn0259113 - symbol:DNApol-alpha180 "DNA polymerase a... 1611 2.7e-218 3
UNIPROTKB|E1BJF4 - symbol:POLA1 "DNA polymerase" species:... 1378 8.3e-215 3
WB|WBGene00012936 - symbol:Y47D3A.29a species:6239 "Caeno... 1266 6.3e-181 4
UNIPROTKB|C7IVS4 - symbol:Y47D3A.29 "DNA polymerase" spec... 1266 6.3e-181 4
UNIPROTKB|Q9NAH1 - symbol:Y47D3A.29 "DNA polymerase" spec... 1298 9.0e-180 3
UNIPROTKB|O48653 - symbol:LOC_Os01g64820 "DNA polymerase ... 1071 8.1e-157 5
UNIPROTKB|Q0JHE4 - symbol:Os01g0868300 "DNA polymerase" s... 1071 9.7e-153 4
ASPGD|ASPL0000000737 - symbol:AN10755 species:162425 "Eme... 1045 2.7e-151 4
UNIPROTKB|Q7SBT9 - symbol:NCU07870 "DNA polymerase" speci... 1080 6.2e-148 3
UNIPROTKB|Q5B0J8 - symbol:AN5932.2 "DNA polymerase" speci... 1045 1.1e-146 4
POMBASE|SPAC3H5.06c - symbol:pol1 "DNA polymerase alpha c... 975 7.6e-139 3
CGD|CAL0002431 - symbol:POL1 species:5476 "Candida albica... 1037 2.8e-129 3
SGD|S000005046 - symbol:POL1 "Catalytic subunit of the DN... 936 9.0e-123 4
UNIPROTKB|Q755Y6 - symbol:AER381C "DNA polymerase" specie... 950 2.6e-120 3
UNIPROTKB|I3LIH4 - symbol:POLA1 "DNA polymerase" species:... 1153 4.9e-117 1
DICTYBASE|DDB_G0282191 - symbol:polA1 "DNA polymerase alp... 934 5.5e-115 4
UNIPROTKB|Q23AJ0 - symbol:TTHERM_00424700 "DNA polymerase... 496 2.0e-80 5
UNIPROTKB|K7GS14 - symbol:LOC100627036 "Uncharacterized p... 548 2.2e-71 3
UNIPROTKB|A8J9T2 - symbol:POLA1 "DNA polymerase" species:... 259 3.0e-55 5
UNIPROTKB|I3LGG7 - symbol:LOC100627036 "Uncharacterized p... 548 7.7e-52 1
UNIPROTKB|Q7RBM5 - symbol:PY06115 "DNA polymerase" specie... 300 1.6e-39 3
UNIPROTKB|Q9LRE6 - symbol:POLD1 "DNA polymerase delta cat... 401 1.1e-32 3
ZFIN|ZDB-GENE-060429-1 - symbol:pold1 "polymerase (DNA di... 394 4.2e-32 2
UNIPROTKB|Q8TSB3 - symbol:MA_0885 "DNA polymerase" specie... 249 6.2e-30 2
FB|FBgn0263600 - symbol:DNApol-delta "DNA-polymerase-delt... 375 4.1e-29 2
WB|WBGene00008645 - symbol:F10C2.4 species:6239 "Caenorha... 360 6.2e-29 1
UNIPROTKB|P90829 - symbol:F10C2.4 "DNA polymerase delta c... 360 6.2e-29 1
MGI|MGI:97741 - symbol:Pold1 "polymerase (DNA directed), ... 372 6.8e-29 3
RGD|621839 - symbol:Pold1 "polymerase (DNA directed), del... 363 6.5e-28 3
UNIPROTKB|O54747 - symbol:Pold1 "DNA polymerase delta cat... 363 6.5e-28 3
GENEDB_PFALCIPARUM|PF10_0165 - symbol:PF10_0165 "DNA poly... 340 1.0e-27 2
UNIPROTKB|Q7KQL4 - symbol:PF10_0165 "DNA polymerase" spec... 340 1.0e-27 2
UNIPROTKB|P28340 - symbol:POLD1 "DNA polymerase delta cat... 357 1.2e-27 3
UNIPROTKB|E2R5W5 - symbol:POLD1 "DNA polymerase" species:... 354 3.1e-27 3
UNIPROTKB|J9NS34 - symbol:POLD1 "DNA polymerase" species:... 354 3.5e-27 3
UNIPROTKB|E1BNZ6 - symbol:E1BNZ6 "DNA polymerase" species... 357 4.1e-27 3
UNIPROTKB|F1RH32 - symbol:POLD1 "DNA polymerase" species:... 349 4.1e-27 2
UNIPROTKB|P28339 - symbol:POLD1 "DNA polymerase delta cat... 357 7.7e-27 3
UNIPROTKB|A8HPJ0 - symbol:POLD1 "DNA polymerase" species:... 354 9.9e-27 2
UNIPROTKB|Q22HL1 - symbol:TTHERM_00636920 "DNA polymerase... 312 2.8e-26 4
DICTYBASE|DDB_G0285381 - symbol:polD1 "DNA polymerase del... 335 8.4e-26 3
ASPGD|ASPL0000065466 - symbol:AN7325 species:162425 "Emer... 329 6.3e-25 2
UNIPROTKB|Q5AWK5 - symbol:AN7325.2 "DNA polymerase" speci... 329 6.3e-25 2
UNIPROTKB|Q8X0N7 - symbol:B10H4.020 "DNA polymerase" spec... 320 9.0e-24 2
UNIPROTKB|Q7RSZ8 - symbol:PY00203 "DNA polymerase" specie... 311 6.5e-23 2
UNIPROTKB|Q755K6 - symbol:AGOS_AFL189W "DNA polymerase" s... 288 4.7e-21 3
POMBASE|SPBC336.04 - symbol:cdc6 "DNA polymerase delta ca... 289 9.2e-21 3
SGD|S000002260 - symbol:POL3 "Catalytic subunit of DNA po... 225 1.5e-19 3
UNIPROTKB|K7GQ23 - symbol:LOC100627036 "Uncharacterized p... 191 8.0e-19 2
TIGR_CMR|SO_1820 - symbol:SO_1820 "DNA polymerase II" spe... 264 8.4e-19 1
UNIPROTKB|A6V6S5 - symbol:polB "DNA polymerase" species:3... 255 7.5e-18 1
POMBASE|SPAC688.10 - symbol:rev3 "DNA polymerase zeta cat... 212 3.4e-17 4
UNIPROTKB|P21189 - symbol:polB "DNA polymerase II" specie... 258 3.6e-17 2
UNIPROTKB|Q9KSP4 - symbol:VC_1212 "DNA polymerase" specie... 236 8.5e-16 1
TIGR_CMR|VC_1212 - symbol:VC_1212 "DNA polymerase II" spe... 236 8.5e-16 1
UNIPROTKB|Q75F27 - symbol:AGOS_AAL099C "DNA polymerase" s... 182 2.0e-15 3
FB|FBgn0002891 - symbol:mus205 "mutagen-sensitive 205" sp... 193 2.1e-14 3
UNIPROTKB|I3L6U8 - symbol:LOC100737059 "DNA polymerase" s... 158 3.8e-14 3
WB|WBGene00021344 - symbol:Y37B11A.2 species:6239 "Caenor... 177 4.5e-14 3
UNIPROTKB|Q9BKQ3 - symbol:Y37B11A.2 "DNA polymerase" spec... 177 4.5e-14 3
ZFIN|ZDB-GENE-050302-55 - symbol:rev3l "REV3-like, cataly... 172 8.5e-14 3
UNIPROTKB|Q8X1U8 - symbol:UPR1 "DNA polymerase" species:5... 176 3.5e-13 3
UNIPROTKB|Q233J3 - symbol:TTHERM_00391570 "DNA polymerase... 188 3.9e-13 4
UNIPROTKB|F1P7E8 - symbol:REV3L "DNA polymerase" species:... 159 2.1e-12 3
UNIPROTKB|F1P7D5 - symbol:REV3L "DNA polymerase" species:... 159 2.3e-12 3
UNIPROTKB|G4NL37 - symbol:MGG_02986 "DNA polymerase" spec... 168 2.4e-12 3
UNIPROTKB|E1BPY8 - symbol:REV3L "DNA polymerase" species:... 161 2.9e-12 3
UNIPROTKB|F1NQT0 - symbol:REV3L "DNA polymerase" species:... 154 4.2e-12 4
UNIPROTKB|K7GRB5 - symbol:LOC100627036 "Uncharacterized p... 176 4.5e-12 1
ASPGD|ASPL0000070569 - symbol:uvsI species:162425 "Emeric... 150 1.4e-11 3
UNIPROTKB|O60673 - symbol:REV3L "DNA polymerase zeta cata... 156 1.5e-11 3
UNIPROTKB|P26811 - symbol:dpo1 "DNA polymerase 1" species... 210 2.0e-11 2
UNIPROTKB|F1LMP6 - symbol:Rev3l "DNA polymerase" species:... 147 7.1e-11 4
UNIPROTKB|F1M8G6 - symbol:Rev3l "DNA polymerase" species:... 147 7.2e-11 4
MGI|MGI:1337131 - symbol:Rev3l "REV3-like, catalytic subu... 149 2.2e-10 4
DICTYBASE|DDB_G0271608 - symbol:rev3 "DNA polymerase zeta... 161 2.4e-10 3
UNIPROTKB|A8IZI8 - symbol:POLZ1 "DNA polymerase" species:... 159 4.6e-09 3
UNIPROTKB|F1RZP3 - symbol:F1RZP3 "Uncharacterized protein... 140 7.8e-06 1
UNIPROTKB|I3LER4 - symbol:I3LER4 "Uncharacterized protein... 113 2.3e-05 1
UNIPROTKB|Q7RF47 - symbol:PY04863 "Uncharacterized protei... 142 3.6e-05 2
GENEDB_PFALCIPARUM|PF10_0362 - symbol:PF10_0362 "DNA poly... 102 7.2e-05 4
UNIPROTKB|Q8IJ38 - symbol:PF10_0362 "DNA polymerase" spec... 102 7.2e-05 4
UNIPROTKB|A8IXV5 - symbol:CHLREDRAFT_172920 "Predicted pr... 129 8.1e-05 1
>UNIPROTKB|Q9DE46 [details] [associations]
symbol:pola1 "DNA polymerase alpha catalytic subunit"
species:8355 "Xenopus laevis" [GO:0000084 "S phase of mitotic cell
cycle" evidence=ISS] [GO:0000166 "nucleotide binding" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0003682 "chromatin
binding" evidence=ISS] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005635 "nuclear envelope" evidence=ISS] [GO:0005654
"nucleoplasm" evidence=ISS] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0006269 "DNA replication, synthesis of RNA primer"
evidence=ISS] [GO:0006270 "DNA replication initiation"
evidence=ISS] [GO:0006271 "DNA strand elongation involved in DNA
replication" evidence=ISS] [GO:0006272 "leading strand elongation"
evidence=ISS] [GO:0006273 "lagging strand elongation" evidence=ISS]
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=ISS] [GO:0008283 "cell proliferation"
evidence=ISS] [GO:0016363 "nuclear matrix" evidence=ISS]
[GO:0000731 "DNA synthesis involved in DNA repair" evidence=ISS]
[GO:0006281 "DNA repair" evidence=ISS] [GO:0000785 "chromatin"
evidence=ISS] [GO:0003896 "DNA primase activity" evidence=ISS]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR015088
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 Pfam:PF08996
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0005635
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 GO:GO:0046872
GO:GO:0003677 GO:GO:0008283 GO:GO:0003682 GO:GO:0051539
GO:GO:0006270 GO:GO:0001882 SUPFAM:SSF53098 GO:GO:0016363
GO:GO:0000084 GO:GO:0006303 GO:GO:0003887 KO:K02320 GO:GO:0006273
GO:GO:0006269 GO:GO:0006272 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0005658 InterPro:IPR024647 Pfam:PF12254 TIGRFAMs:TIGR00592
CTD:5422 HOVERGEN:HBG080008 EMBL:AF202992 RefSeq:NP_001082055.1
UniGene:Xl.7596 ProteinModelPortal:Q9DE46 SMR:Q9DE46
MINT:MINT-7386218 GeneID:398200 KEGG:xla:398200
Xenbase:XB-GENE-1000552 Uniprot:Q9DE46
Length = 1458
Score = 1614 (573.2 bits), Expect = 1.4e-244, Sum P(3) = 1.4e-244
Identities = 339/695 (48%), Positives = 443/695 (63%)
Query: 560 IRITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDK------QYXXXXXXXXXXX 613
++ITN+ GNV+SRTLMGGRSERNE+LLLHAF E ++++PDK Q
Sbjct: 766 LQITNIAGNVMSRTLMGGRSERNEYLLLHAFTENNFIVPDKPVFKKMQQTTVEDNDDMGT 825
Query: 614 XXXXXXXRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI--PVRML 671
RKKAAY+GGLVLEPK GFYDKFI+L+DFNSLYPSIIQEYNICFTT+
Sbjct: 826 DQNKNKSRKKAAYAGGLVLEPKVGFYDKFILLLDFNSLYPSIIQEYNICFTTVHREAPST 885
Query: 672 QDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKAL 731
Q + LP ++ GILP EI+KLVE RR VK LMKQP+L+ DL +QYDIRQKAL
Sbjct: 886 QKGEDQDEIPELPHSDLEMGILPREIRKLVERRRHVKQLMKQPDLNPDLYLQYDIRQKAL 945
Query: 732 KLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMIS 791
KLTANSMYGCLGF SRF+A+PLAALVT +GREILL+TK +V+ +N EVIYGDTDS+MI+
Sbjct: 946 KLTANSMYGCLGFSYSRFYAKPLAALVTHQGREILLHTKEMVQKMNLEVIYGDTDSIMIN 1005
Query: 792 CNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVXXXXXXXXXXXXXXXXXXXXXNGKMI 851
N N+ + VFK+GN++KSE NK YK LE+DIDG+ +GK +
Sbjct: 1006 TNCNNLEEVFKLGNRVKSEINKSYKLLEIDIDGIFKSLLLLKKKKYAALTVEPTGDGKYV 1065
Query: 852 CSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLD 911
QE+KG+D+VRRDW +LA +AG +VISQIL +Q D ++NI + + +I ++
Sbjct: 1066 TKQELKGLDIVRRDWCELAKQAGNYVISQILSDQPR-----DSIVENIQKKLTEIGENVT 1120
Query: 912 NGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQGDTISYIICEDGT 971
NG VP+T EI K LTK P++Y D+K+LPHV VAL +N+ +K+K GDTISY+IC+DG+
Sbjct: 1121 NGTVPITQYEINKALTKDPQDYPDKKSLPHVHVALWINSQGGRKVKAGDTISYVICQDGS 1180
Query: 972 SEAATQRAYNIEELKNNSKLKIDVNYYLSQQIHPVVTRLLEPIEGTDAVRIAECLGLDTS 1031
+ +A+QRAY E+L+ L ID YYLSQQ+HPVV R+ EPI+G D+ IA LGLD S
Sbjct: 1181 NLSASQRAYAQEQLQKQENLSIDTQYYLSQQVHPVVARICEPIDGIDSALIAMWLGLDPS 1240
Query: 1032 LYRSQIKESIQQSEEN--ILGVGE--AEEVKYQFCDKFEFTCMNPSCKQVNTVEAPTRLS 1087
+R+ QQ EEN +LG +E KY+ C++F+F C P C N + S
Sbjct: 1241 QFRAH--RHYQQDEENDALLGGPSQLTDEEKYRDCERFKFFC--PKCGTENIYDNVFDGS 1296
Query: 1088 THGVVFVLDECINPECKVPPYTYLPHLINKLSQDMNKYIVKYYEGWLKCEDPGCSDLTRR 1147
+ L C PEC P Y+ + NKL D+ +YI KYY GWL CE+ C + TRR
Sbjct: 1297 GLQIEPGLKRCSKPECDASPLDYVIQVHNKLLLDIRRYIKKYYSGWLVCEEKTCQNRTRR 1356
Query: 1148 CPLGLKTR--LCTTCHKYKLHRVYTELQLYQQLSFFHYICD----ITKALTKSDTPSIK- 1200
PL +C C K L Y E LY QL F+ +I D + K +++ + +K
Sbjct: 1357 LPLSFSRNGPICQACSKATLRSEYPEKALYTQLCFYRFIFDWDYALEKVVSEQERGHLKK 1416
Query: 1201 -FDSETYMGYCKMKQHVERFLESSAYNIVDLKKLF 1234
E+ Y K+K V++ L S Y+ V+L KLF
Sbjct: 1417 KLFQESENQYKKLKSTVDQVLSRSGYSEVNLSKLF 1451
Score = 571 (206.1 bits), Expect = 1.4e-244, Sum P(3) = 1.4e-244
Identities = 122/269 (45%), Positives = 169/269 (62%)
Query: 347 WEAI-QTEPSTSEPQVHSRTADDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGK 405
W+ I + EP T+E QV S LPL T + +VFR ++LDA+ED Y QPG VYLFGK
Sbjct: 309 WDQIDEAEPMTTEIQVDS----SHLPLVTGADGSQVFRFYWLDAYEDQYSQPGVVYLFGK 364
Query: 406 VFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLK------TKEPVSIAQVYSEFDQ-IATQ 458
V+++ +++ SCCV V+NI+R +YLLPR ++ T PVS+ VY EF++ +A +
Sbjct: 365 VWIESADAYVSCCVSVKNIERTVYLLPRENRVQLSTGKDTGAPVSMMHVYQEFNEAVAEK 424
Query: 459 YKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKSSFL 518
YKI+ FKS+K++K YAF +P VP SEYLEVRYSA P LP DL G+TFSHVFGT +S L
Sbjct: 425 YKIMKFKSKKVDKDYAFEIPDVPASSEYLEVRYSADSPQLPQDLKGETFSHVFGTNTSSL 484
Query: 519 ENLLLERKIKGPSWLEFPEAEKFPSRISWCKYEVQCNQMEKIRITNVCGN----VLS--- 571
E LL RKIKGPSWLE + +SWCK E + +++ + VLS
Sbjct: 485 ELFLLSRKIKGPSWLEIKSPQLSSQPMSWCKVEAVVTRPDQVSVVKDLAPPPVVVLSLSM 544
Query: 572 RTLMGGRSERNEFLLLHAFHEKSYVLPDK 600
+T+ ++ +NE + + A ++ L DK
Sbjct: 545 KTVQNAKTHQNEIVAIAALVHHTFPL-DK 572
Score = 212 (79.7 bits), Expect = 1.4e-244, Sum P(3) = 1.4e-244
Identities = 51/152 (33%), Positives = 77/152 (50%)
Query: 46 RAKRQKIDKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEXXX 105
R++R+K +K+ + A ++LK K G K KYE ++YEEV E EY++ V RQ+
Sbjct: 11 RSRREKTEKSGRKEALERLKRAKA-GEKVKYEVEQVSSIYEEVDEAEYSKLVRDRQDDDW 69
Query: 106 XXXXXXXXYVEDGREIFDDDIED---VPQXXXXXXXXXXXXNIQNPNAK--GDIQKLLAN 160
YVEDGREIFDDD+ED N++ + +I+ +
Sbjct: 70 IVDDDGTGYVEDGREIFDDDLEDNALADSGKGAKGAPKDKTNVKKSSVSKPNNIKSMFMA 129
Query: 161 MPVKKKKKEEVQLNNDDVLADLLSEVNTTIAP 192
VKK + V L+ DD+L DLL ++ + P
Sbjct: 130 SAVKKTTDKAVDLSKDDLLGDLLQDLKSQAVP 161
Score = 38 (18.4 bits), Expect = 7.4e-170, Sum P(3) = 7.4e-170
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 157 LLANMPVKKKKKEEVQLNNDDVLAD 181
++ + PV KK ++ +NDD+ D
Sbjct: 802 IVPDKPVFKKMQQTTVEDNDDMGTD 826
Score = 37 (18.1 bits), Expect = 4.2e-226, Sum P(3) = 4.2e-226
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 15 VEELNVKEGKSTRARSA 31
V+E N+KE KS+ SA
Sbjct: 286 VKEENIKEEKSSFITSA 302
Score = 37 (18.1 bits), Expect = 3.3e-188, Sum P(3) = 3.3e-188
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 543 SRISWCKYEVQCNQMEKIRITNVCGNVLSRTLMG 576
S+++ C + N+ K + N+ + RTL+G
Sbjct: 587 SKLNDCIFPYDYNEAVKQKNANIEIALTERTLLG 620
Score = 37 (18.1 bits), Expect = 5.2e-66, Sum P(4) = 5.2e-66
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 848 GKMICSQEIKGVDVVR 863
G++IC EI +++R
Sbjct: 687 GRIICDIEISAKELIR 702
Score = 37 (18.1 bits), Expect = 5.2e-66, Sum P(4) = 5.2e-66
Identities = 6/26 (23%), Positives = 13/26 (50%)
Query: 875 KFVISQILDEQSYTDYSLDDRLQNIH 900
K + Q+L Y++ +L Q ++
Sbjct: 1430 KSTVDQVLSRSGYSEVNLSKLFQTLN 1455
>ZFIN|ZDB-GENE-030114-9 [details] [associations]
symbol:pola1 "polymerase (DNA directed), alpha 1"
species:7955 "Danio rerio" [GO:0001882 "nucleoside binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA;IBA] [GO:0006260 "DNA replication"
evidence=IEA;IBA] [GO:0006139 "nucleobase-containing compound
metabolic process" evidence=IEA] [GO:0019985 "translesion
synthesis" evidence=IBA] [GO:0006303 "double-strand break repair
via nonhomologous end joining" evidence=IBA] [GO:0090305 "nucleic
acid phosphodiester bond hydrolysis" evidence=IBA] [GO:0005658
"alpha DNA polymerase:primase complex" evidence=IBA] [GO:0008408
"3'-5' exonuclease activity" evidence=IBA] [GO:0005634 "nucleus"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
ZFIN:ZDB-GENE-030114-9 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
GO:GO:0001882 SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0006303
GO:GO:0003887 GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0005658 InterPro:IPR024647 Pfam:PF12254 TIGRFAMs:TIGR00592
GeneTree:ENSGT00550000074891 EMBL:BX470095 IPI:IPI00898449
Ensembl:ENSDART00000128595 ArrayExpress:E7FB68 Bgee:E7FB68
Uniprot:E7FB68
Length = 1468
Score = 1618 (574.6 bits), Expect = 1.1e-240, Sum P(3) = 1.1e-240
Identities = 337/698 (48%), Positives = 448/698 (64%)
Query: 560 IRITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYXXXXXXXXX------XX 613
++ITN+ GNV+SRTLMGGRSERNE+LLLHAFHE+ +++PDKQ+
Sbjct: 775 LQITNIAGNVMSRTLMGGRSERNEYLLLHAFHERDFIVPDKQFFKKAQQDLGEDEEGDSG 834
Query: 614 XXXXXXXRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP-----V 668
RKKAAY+GGLVL+PK GFYDKFI+L+DFNSLYPSIIQE+NICFTT+
Sbjct: 835 KGKSNKTRKKAAYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTVERGATNT 894
Query: 669 RMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQ 728
R + D + E LP+ ++ GILP EI+KLVE RRQVK LMK+P+L+ DL +QYDIRQ
Sbjct: 895 RKKTEEDEDEIPE-LPDQSLEMGILPKEIRKLVERRRQVKQLMKEPDLNPDLYLQYDIRQ 953
Query: 729 KALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSL 788
KALKLTANSMYGCLGF SRF+A+PLAALVT KGREIL++TK +V+ +N EVIYGDTDS+
Sbjct: 954 KALKLTANSMYGCLGFSFSRFYAKPLAALVTHKGREILMHTKEMVQRMNLEVIYGDTDSI 1013
Query: 789 MISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVXXXXXXXXXXXXXXXXXXXXXNG 848
MI+ N + + VFK+GN++KSE NKLYK LE+DIDGV +G
Sbjct: 1014 MINTNSTNLEEVFKLGNKVKSEVNKLYKLLEIDIDGVFKSLLLLKKKKYAALMVEPQGDG 1073
Query: 849 KMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRT 908
K QE+KG+D+VRRDW LA E G +VI QIL +Q+ D ++NI +H+ +I
Sbjct: 1074 KYTTKQELKGLDIVRRDWCDLAKECGNYVIGQILSDQNR-----DTIIENIQKHLIEIGE 1128
Query: 909 DLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQGDTISYIICE 968
+ NG +PL + EI K LTK P++Y D+K+LPHV VAL +N+ KK+K GDT+SY+IC+
Sbjct: 1129 KVANGNIPLNMFEIHKSLTKEPQDYPDKKSLPHVHVALWINSQGGKKVKAGDTVSYVICQ 1188
Query: 969 DGTSEAATQRAYNIEELKNNSKLKIDVNYYLSQQIHPVVTRLLEPIEGTDAVRIAECLGL 1028
DG++ AA+QRAY +E+L+ L +D YYLSQQ+HPVV R+ EPIEG DAV IA LGL
Sbjct: 1189 DGSNLAASQRAYTLEQLQKQPGLNLDTQYYLSQQVHPVVGRICEPIEGIDAVLIATWLGL 1248
Query: 1029 DTSLYRSQIKESIQQSEENILGVGE--AEEVKYQFCDKFEFTCMNPSCKQVNTVEAPTRL 1086
D S +R+Q ++ + ++ LG +E +Y+ C++F FTC P C N +
Sbjct: 1249 DPSHFRAQ-QQQREDEADDFLGAPAQLTDEERYRDCERFTFTC--PDCGTENIYDNVFEG 1305
Query: 1087 STHGVVFVLDECINPECKVPPYTYLPHLINKLSQDMNKYIVKYYEGWLKCEDPGCSDLTR 1146
+ + L C + C P + + NKL D+ ++I +YY GWL CED C + R
Sbjct: 1306 TGSTLQLSLKSCCHVPCGGSPMDHQVQIGNKLQLDIRRHIRRYYSGWLLCEDQACRNRIR 1365
Query: 1147 RCPLGLKTR--LCTTCHKYKLHRVYTELQLYQQLSFFHYICD----ITKALTKSDTPSIK 1200
R P+ +C C + L Y+E LY QLSF+ YI D I K LT D +K
Sbjct: 1366 RLPIAFSRSGPICPACLRSTLKPEYSEKALYNQLSFYRYIFDWEYAINKVLTGDD--KLK 1423
Query: 1201 FDSETYMG----YCKMKQHVERFLESSAYNIVDLKKLF 1234
F S+ + Y K+K + L +S Y+ V+L KLF
Sbjct: 1424 FKSKEWKEEMEVYKKLKGVTDNILATSGYSEVNLAKLF 1461
Score = 535 (193.4 bits), Expect = 1.1e-240, Sum P(3) = 1.1e-240
Identities = 114/267 (42%), Positives = 161/267 (60%)
Query: 347 WEAIQTEPSTSEPQVHSRTADDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKV 406
WE ++ E E V + LPL + VFR ++LDAFED Y QPG V+LFGKV
Sbjct: 318 WEKME-EGKPIETPVEVQVDSSQLPLVEGPDGDMVFRFYWLDAFEDQYNQPGVVFLFGKV 376
Query: 407 FVKENNSHSSCCVIVQNIDRKIYLLPRSEH---LKTKEP---VSIAQVYSEFDQIATQYK 460
+++ +H SCCV V+NI+R +YLLPR EH L T E V + VY EF++I+ ++K
Sbjct: 377 WIESAEAHVSCCVAVKNIERTMYLLPR-EHKVNLATGEKGVAVGMMDVYKEFNEISEKFK 435
Query: 461 ILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKSSFLEN 520
I+ FKS+ + K YAF +P +P SEYLEV+YSA+ P+LPSDL G TFSHVFGT +S LE+
Sbjct: 436 IMKFKSKPVTKNYAFEIPDIPSQSEYLEVKYSAEIPSLPSDLKGTTFSHVFGTNTSSLEH 495
Query: 521 LLLERKIKGPSWLEFPEAEKFPSRISWCKYEVQCNQMEKIRITN-------VCGNVLSRT 573
LL RKI+GP WL+ + ISWCK E + + I + V ++ +T
Sbjct: 496 FLLNRKIRGPCWLDVTTPQLSNQPISWCKVEAVAQKSDLISVVKDLSPPPLVVMSISLKT 555
Query: 574 LMGGRSERNEFLLLHAFHEKSYVLPDK 600
+ ++ +NE + + A ++ L DK
Sbjct: 556 VQNPKTHQNEIVSIAALVHHTFPL-DK 581
Score = 207 (77.9 bits), Expect = 1.1e-240, Sum P(3) = 1.1e-240
Identities = 46/148 (31%), Positives = 83/148 (56%)
Query: 46 RAKRQKIDKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEXXX 105
R++R+K +K + +A ++LK K +G K KYE ++Y+EV E++Y++ V +RQ+
Sbjct: 28 RSRREKKEKVGRKSALEQLKRAK-KGEKVKYEVEEFTSIYDEVDEEQYSKIVRERQDDDW 86
Query: 106 XXXXXXXXYVEDGREIFDDDIEDV---PQXXXXXXXXXXXXNIQNPNAK--GDIQKLLAN 160
YVEDGREIFD++++D P+ N++ + I+ + N
Sbjct: 87 IIDDDGTGYVEDGREIFDEELDDDALGPKSKQAAKGGDSKKNVKKSSVSKPNSIKSMFMN 146
Query: 161 MPVKKKKKEEVQLNNDDVLADLLSEVNT 188
VKK ++ V L+ DD+L D+L ++++
Sbjct: 147 SNVKKPAEKHVDLSQDDLLGDILQDLHS 174
Score = 37 (18.1 bits), Expect = 2.7e-62, Sum P(3) = 2.7e-62
Identities = 5/16 (31%), Positives = 11/16 (68%)
Query: 848 GKMICSQEIKGVDVVR 863
G+++C EI +++R
Sbjct: 696 GRLVCDIEISAKELIR 711
>UNIPROTKB|F6Y1C9 [details] [associations]
symbol:POLA1 "DNA polymerase" species:9615 "Canis lupus
familiaris" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0001882 "nucleoside
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 GO:GO:0001882
SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 OMA:GSGTDME InterPro:IPR024647 Pfam:PF12254
TIGRFAMs:TIGR00592 GeneTree:ENSGT00550000074891
Ensembl:ENSCAFT00000021463 EMBL:AAEX03026211 Uniprot:F6Y1C9
Length = 1467
Score = 1609 (571.5 bits), Expect = 1.3e-239, Sum P(3) = 1.3e-239
Identities = 338/698 (48%), Positives = 448/698 (64%)
Query: 560 IRITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYXXX-------XXXXXXX 612
++ITN+ GN++SRTLMGGRSERNEFLLLHAF+E +Y++PDKQ
Sbjct: 772 LQITNIAGNIMSRTLMGGRSERNEFLLLHAFYENNYIVPDKQIFRKPQQKLGDEDEELDG 831
Query: 613 XXXXXXXXRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP----- 667
RKKAAY+GGLVL+PK GFYDKFI+L+DFNSLYPSIIQE+NICFTT+
Sbjct: 832 DANKYKKGRKKAAYAGGLVLDPKAGFYDKFILLLDFNSLYPSIIQEFNICFTTVQRVASE 891
Query: 668 -VRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDI 726
++ +D + + E LP+ ++ GILP EI+KLVE R+QVK LMKQ +L+ DL++QYDI
Sbjct: 892 TQKVTEDGEQEQIPE-LPDPGLEMGILPREIRKLVERRKQVKQLMKQQDLNPDLVLQYDI 950
Query: 727 RQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTD 786
RQKALKLTANSMYGCLGF SRF+A+PLAALVT KGREIL++TK +V+ +N EVIYGDTD
Sbjct: 951 RQKALKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREILMHTKEMVQKMNLEVIYGDTD 1010
Query: 787 SLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVXXXXXXXXXXXXXXXXXXXXX 846
S+MI+ N D + V+K+GN++KSE NKLYK LE+DIDGV
Sbjct: 1011 SIMINTNSTDLEEVYKLGNKVKSEVNKLYKLLEIDIDGVFKSLLLLKKKKYGALVVEPTS 1070
Query: 847 NGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKI 906
+G QE+KG+D+VRRDW LA E G FVI QIL +QS D ++NI + + +I
Sbjct: 1071 DGNYSTKQELKGLDIVRRDWCDLAKETGNFVIGQILSDQSR-----DTIVENIQKRLIEI 1125
Query: 907 RTDLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQGDTISYII 966
++ NG VP++ EI K LTK P++Y D+K+LPHV VAL +N+ +K+K GDT+SY+I
Sbjct: 1126 GENVLNGSVPVSQFEINKALTKDPQDYPDKKSLPHVHVALWMNSQGGRKMKAGDTVSYVI 1185
Query: 967 CEDGTSEAATQRAYNIEELKNNSKLKIDVNYYLSQQIHPVVTRLLEPIEGTDAVRIAECL 1026
C+DG++ A+QRAY E+L+ L ID YYL+QQIHPVV R+ EPI+G DAV IA L
Sbjct: 1186 CQDGSNLTASQRAYAPEQLQKQDNLTIDTQYYLAQQIHPVVARICEPIDGIDAVLIATWL 1245
Query: 1027 GLDTSLYRSQIKESIQQSEENILGVGE-AEEVKYQFCDKFEFTCMNPSCKQVNTVEAPTR 1085
GLD + +R ++++ + G + +E KY+ C++F+ C P+C N ++
Sbjct: 1246 GLDPTQFRVHHYHKDEENDALLGGPAQLTDEEKYRDCERFKCPC--PTCGTENIYDSVLD 1303
Query: 1086 LSTHGVVFVLDECINPECKVPPYTYLPHLINKLSQDMNKYIVKYYEGWLKCEDPGCSDLT 1145
S V L C N +CK P T + L NKL D+ + I KYYEGWL CE+P C + T
Sbjct: 1304 GSGTDVEPSLYRCSNIDCKASPLTSVVQLSNKLIMDIRRCIKKYYEGWLICEEPTCQNRT 1363
Query: 1146 RRCPLGLKTR--LCTTCHKYKLHRVYTELQLYQQLSFFHYICDITKALTKSDTPSIK--- 1200
RR PL LC C K L Y++ LY QL F+ YI D+ AL K T K
Sbjct: 1364 RRLPLQFSRNGPLCQVCMKATLRPEYSDKSLYTQLCFYRYIFDVDCALEKLSTDQEKDKL 1423
Query: 1201 ---FDSETYMGYCKMKQHVERFLESSAYNIVDLKKLFS 1235
F + Y K++ E+FL S Y+ V+L KLF+
Sbjct: 1424 KKVFTLKVRQDYQKLRNTAEQFLSRSGYSEVNLSKLFA 1461
Score = 541 (195.5 bits), Expect = 1.3e-239, Sum P(3) = 1.3e-239
Identities = 112/268 (41%), Positives = 163/268 (60%)
Query: 347 WEAIQTEPSTSEPQVHSRTADDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKV 406
W+ Q + S+ Q + LPL + ++VF ++LDA+ED Y QPG V+LFGKV
Sbjct: 313 WDIDQEDDSSFSAQ-EVQVDSSHLPLVKGTDEEQVFHFYWLDAYEDQYSQPGVVFLFGKV 371
Query: 407 FVKENNSHSSCCVIVQNIDRKIYLLPRSEHL------KTKEPVSIAQVYSEFDQ-IATQY 459
+++ +H SCCV+V+NI+R +Y LPR + +T+ V++ VY EFD+ IA +Y
Sbjct: 372 WIESAKTHVSCCVMVKNIERTLYFLPREMKIDLNTGKETETLVTMKDVYDEFDEKIAAKY 431
Query: 460 KILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKSSFLE 519
KI+ FKS+ +EK YAF +P VP+ SEYLEVRYSA+ P LP DL G+TFSHVFGT +S LE
Sbjct: 432 KIMKFKSKPVEKNYAFEIPDVPEKSEYLEVRYSAEMPQLPQDLKGETFSHVFGTNTSSLE 491
Query: 520 NLLLERKIKGPSWLEFPEAEKFPSRISWCKYEVQCNQMEKIRITNVCGN----VLS---R 572
L+ RKIKGP WLE + +SWCK E + + + + G V+S +
Sbjct: 492 MFLMNRKIKGPCWLEVKNPQLLNQPVSWCKVEAMALKPDLVNVIKDIGPPPLVVMSFSMK 551
Query: 573 TLMGGRSERNEFLLLHAFHEKSYVLPDK 600
T+ ++ ++E + + A S+ L DK
Sbjct: 552 TMQNAKTHQHEIIAVAALVHHSFAL-DK 578
Score = 200 (75.5 bits), Expect = 1.3e-239, Sum P(3) = 1.3e-239
Identities = 52/154 (33%), Positives = 75/154 (48%)
Query: 46 RAKRQKIDKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEXXX 105
R++R+K K + A ++LK K G K+KYE +VYEEV E++Y++ V RQ+
Sbjct: 26 RSRREKKSKRGRQEALERLKRAKA-GEKYKYEVEDFTSVYEEVDEEQYSKLVQARQDDDW 84
Query: 106 XXXXXXXXYVEDGREIFDDDIEDVPQXXXXXXXXXXXXNIQNPNAK-------GDIQKLL 158
YVEDGREIFDDD+ED N K +I+ +
Sbjct: 85 IVDDDGIGYVEDGREIFDDDLEDDALDSHEKGKDDKARTKDRRNVKKAAVTKPNNIKSMF 144
Query: 159 ANMPVKKKKKEEVQLNNDDVLADLLSEVNTTIAP 192
KK + V L+ DD+L D+L ++NT P
Sbjct: 145 IASAGKKTTDKAVDLSKDDLLGDILQDLNTEKPP 178
Score = 45 (20.9 bits), Expect = 4.6e-63, Sum P(3) = 4.6e-63
Identities = 21/83 (25%), Positives = 35/83 (42%)
Query: 848 GKMICSQEIKGVDVVR-RDW--SQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMK 904
G+MIC EI +++R + + S+L + + I E YS L + EH
Sbjct: 693 GRMICDVEISAKELIRCKSYHLSELVQQILRTERVVIPMENVRNMYSESSHLLYLLEHTW 752
Query: 905 KIRTDLDNGFVPLTLLEITKQLT 927
K + L +L + Q+T
Sbjct: 753 KDARFILQIMCELNVLPLALQIT 775
Score = 44 (20.5 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 372 LATDHENKKVFRMFFLDAFEDIYKQPGTVYLF 403
L+TD E K+ ++F L +D K T F
Sbjct: 1414 LSTDQEKDKLKKVFTLKVRQDYQKLRNTAEQF 1445
>UNIPROTKB|A6NMQ1 [details] [associations]
symbol:POLA1 "DNA polymerase" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001882
"nucleoside binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0043231
"intracellular membrane-bounded organelle" evidence=IDA]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR015088
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 Pfam:PF08996
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
GO:GO:0001882 SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 HOGENOM:HOG000163524 OMA:GSGTDME
InterPro:IPR024647 Pfam:PF12254 TIGRFAMs:TIGR00592 HGNC:HGNC:9173
HOVERGEN:HBG080008 ChiTaRS:POLA1 OrthoDB:EOG43XV2M EMBL:AC002504
EMBL:AC004655 EMBL:AC079375 EMBL:AC135280 IPI:IPI00647655
ProteinModelPortal:A6NMQ1 SMR:A6NMQ1 STRING:A6NMQ1 PRIDE:A6NMQ1
Ensembl:ENST00000379068 ArrayExpress:A6NMQ1 Bgee:A6NMQ1
Uniprot:A6NMQ1
Length = 1468
Score = 1602 (569.0 bits), Expect = 2.7e-239, Sum P(3) = 2.7e-239
Identities = 335/704 (47%), Positives = 450/704 (63%)
Query: 560 IRITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYXXX-------XXXXXXX 612
++ITN+ GN++SRTLMGGRSERNEFLLLHAF+E +Y++PDKQ
Sbjct: 772 LQITNIAGNIMSRTLMGGRSERNEFLLLHAFYENNYIVPDKQIFRKPQQKLGDEDEEIDG 831
Query: 613 XXXXXXXXRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP----- 667
RKKAAY+GGLVL+PK GFYDKFI+L+DFNSLYPSIIQE+NICFTT+
Sbjct: 832 DTNKYKKGRKKAAYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTVQRVASE 891
Query: 668 -VRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDI 726
++ +D + + E LP+ ++ GILP EI+KLVE R+QVK LMKQ +L+ DL++QYDI
Sbjct: 892 AQKVTEDGEQEQIPE-LPDPSLEMGILPREIRKLVERRKQVKQLMKQQDLNPDLILQYDI 950
Query: 727 RQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTD 786
RQKALKLTANSMYGCLGF SRF+A+PLAALVT KGREIL++TK +V+ +N EVIYGDTD
Sbjct: 951 RQKALKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREILMHTKEMVQKMNLEVIYGDTD 1010
Query: 787 SLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVXXXXXXXXXXXXXXXXXXXXX 846
S+MI+ N + + VFK+GN++KSE NKLYK LE+DIDGV
Sbjct: 1011 SIMINTNSTNLEEVFKLGNKVKSEVNKLYKLLEIDIDGVFKSLLLLKKKKYAALVVEPTS 1070
Query: 847 NGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKI 906
+G + QE+KG+D+VRRDW LA + G FVI QIL +QS D ++NI + + +I
Sbjct: 1071 DGNYVTKQELKGLDIVRRDWCDLAKDTGNFVIGQILSDQSR-----DTIVENIQKRLIEI 1125
Query: 907 RTDLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQGDTISYII 966
++ NG VP++ EI K LTK P++Y D+K+LPHV VAL +N+ +K+K GDT+SY+I
Sbjct: 1126 GENVLNGSVPVSQFEINKALTKDPQDYPDKKSLPHVHVALWINSQGGRKVKAGDTVSYVI 1185
Query: 967 CEDGTSEAATQRAYNIEELKNNSKLKIDVNYYLSQQIHPVVTRLLEPIEGTDAVRIAECL 1026
C+DG++ A+QRAY E+L+ L ID YYL+QQIHPVV R+ EPI+G DAV IA L
Sbjct: 1186 CQDGSNLTASQRAYAPEQLQKQDNLTIDTQYYLAQQIHPVVARICEPIDGIDAVLIATWL 1245
Query: 1027 GLDTSLYRSQIKESIQQSEENILGVGE-AEEVKYQFCDKFEFTCMNPSCKQVNTVEAPTR 1085
GLD + +R ++++ + G + +E KY+ C++F+ C P+C N +
Sbjct: 1246 GLDPTQFRVHHYHKDEENDALLGGPAQLTDEEKYRDCERFKCPC--PTCGTENIYDNVFD 1303
Query: 1086 LSTHGVVFVLDECINPECKVPPYTYLPHLINKLSQDMNKYIVKYYEGWLKCEDPGCSDLT 1145
S + L C N +CK P T+ L NKL D+ ++I KYY+GWL CE+P C + T
Sbjct: 1304 GSGTDMEPSLYRCSNIDCKASPLTFTVQLSNKLIMDIRRFIKKYYDGWLICEEPTCRNRT 1363
Query: 1146 RRCPLGLKTR--LCTTCHKYKLHRVYTELQLYQQLSFFHYI----CDITKALTKSDTPSI 1199
R PL LC C K L Y++ LY QL F+ YI C + K T + +
Sbjct: 1364 RHLPLQFSRTGPLCPACMKATLQPEYSDKSLYTQLCFYRYIFDAECALEKLTTDHEKDKL 1423
Query: 1200 K---FDSETYMGYCKMKQHVERFLESSAYNIVDLKKLFS-CEEK 1239
K F + Y K+K E+FL S Y+ V+L KLF+ C K
Sbjct: 1424 KKQFFTPKVLQDYRKLKNTAEQFLSRSGYSEVNLSKLFAGCAVK 1467
Score = 545 (196.9 bits), Expect = 2.7e-239, Sum P(3) = 2.7e-239
Identities = 117/269 (43%), Positives = 164/269 (60%)
Query: 347 WEAIQTEPSTSEPQVHSRTADDS-LPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGK 405
W+ I E +S V D S LPL + ++VF ++LDA+ED Y QPG V+LFGK
Sbjct: 313 WD-IDQEGDSSF-SVQEVQVDSSHLPLVKGADEEQVFHFYWLDAYEDQYNQPGVVFLFGK 370
Query: 406 VFVKENNSHSSCCVIVQNIDRKIYLLPRSEHL------KTKEPVSIAQVYSEFDQ-IATQ 458
V+++ +H SCCV+V+NI+R +Y LPR + +T P+S+ VY EFD+ IAT+
Sbjct: 371 VWIESAETHVSCCVMVKNIERTLYFLPREMKIDLNTGKETGTPISMKDVYEEFDEKIATK 430
Query: 459 YKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKSSFL 518
YKI+ FKS+ +EK YAF +P VP+ SEYLEV+YSA+ P LP DL G+TFSHVFGT +S L
Sbjct: 431 YKIMKFKSKPVEKNYAFEIPDVPEKSEYLEVKYSAEMPQLPQDLKGETFSHVFGTNTSSL 490
Query: 519 ENLLLERKIKGPSWLEFPEAEKFPSRISWCKYEVQCNQMEKIR-ITNVCGNVL------S 571
E L+ RKIKGP WLE + +SWCK E + + + I +V L
Sbjct: 491 ELFLMNRKIKGPCWLEVKSPQLLNQPVSWCKVEAMALKPDLVNVIKDVSPPPLVVMAFSM 550
Query: 572 RTLMGGRSERNEFLLLHAFHEKSYVLPDK 600
+T+ ++ +NE + + A S+ L DK
Sbjct: 551 KTMQNAKNHQNEIIAMAALVHHSFAL-DK 578
Score = 200 (75.5 bits), Expect = 2.7e-239, Sum P(3) = 2.7e-239
Identities = 52/150 (34%), Positives = 73/150 (48%)
Query: 46 RAKRQKIDKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEXXX 105
RA+R+K K + A ++LK K G K+KYE VYEEV E++Y++ V RQ+
Sbjct: 26 RARREKKSKKGRQEALERLKKAKA-GEKYKYEVEDFTGVYEEVDEEQYSKLVQARQDDDW 84
Query: 106 XXXXXXXXYVEDGREIFDDDIEDVPQXXXXXXXXXXXXNIQNPNAK-------GDIQKLL 158
YVEDGREIFDDD+ED N N K +I+ +
Sbjct: 85 IVDDDGIGYVEDGREIFDDDLEDDALDADEKGKDGKARNKDKRNVKKLAVTKPNNIKSMF 144
Query: 159 ANMPVKKKKKEEVQLNNDDVLADLLSEVNT 188
KK + V L+ D +L D+L ++NT
Sbjct: 145 IACAGKKTADKAVDLSKDGLLGDILQDLNT 174
Score = 50 (22.7 bits), Expect = 4.9e-64, Sum P(3) = 4.9e-64
Identities = 22/83 (26%), Positives = 36/83 (43%)
Query: 848 GKMICSQEIKGVDVVR-RDW--SQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMK 904
G+MIC EI +++R + + S+L + K I E YS +L + EH
Sbjct: 693 GRMICDVEISAKELIRCKSYHLSELVQQILKTERVVIPMENIQNMYSESSQLLYLLEHTW 752
Query: 905 KIRTDLDNGFVPLTLLEITKQLT 927
K + L +L + Q+T
Sbjct: 753 KDAKFILQIMCELNVLPLALQIT 775
Score = 47 (21.6 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 372 LATDHENKKVFRMFFLD-AFEDIYKQPGTVYLF 403
L TDHE K+ + FF +D K T F
Sbjct: 1414 LTTDHEKDKLKKQFFTPKVLQDYRKLKNTAEQF 1446
Score = 39 (18.8 bits), Expect = 6.7e-10, Sum P(2) = 6.7e-10
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 1203 SETYMGYCKMKQHVERFL 1220
+ET++ C M +++ER L
Sbjct: 376 AETHVSCCVMVKNIERTL 393
>UNIPROTKB|P09884 [details] [associations]
symbol:POLA1 "DNA polymerase alpha catalytic subunit"
species:9606 "Homo sapiens" [GO:0001882 "nucleoside binding"
evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0051539 "4 iron,
4 sulfur cluster binding" evidence=IEA] [GO:0046982 "protein
heterodimerization activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006260 "DNA replication" evidence=IMP]
[GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IMP;IDA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
[GO:0016363 "nuclear matrix" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005658 "alpha DNA polymerase:primase
complex" evidence=IDA;TAS] [GO:0000166 "nucleotide binding"
evidence=IDA] [GO:0000785 "chromatin" evidence=IDA] [GO:0006272
"leading strand elongation" evidence=IDA] [GO:0006273 "lagging
strand elongation" evidence=IDA] [GO:0005635 "nuclear envelope"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0006303
"double-strand break repair via nonhomologous end joining"
evidence=IMP] [GO:0000731 "DNA synthesis involved in DNA repair"
evidence=IMP] [GO:0008283 "cell proliferation" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA;NAS] [GO:0005654
"nucleoplasm" evidence=IDA;TAS] [GO:0006271 "DNA strand elongation
involved in DNA replication" evidence=IMP;TAS] [GO:0006281 "DNA
repair" evidence=IDA] [GO:0000084 "S phase of mitotic cell cycle"
evidence=IDA;TAS] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0003896 "DNA primase activity" evidence=IDA] [GO:0006270 "DNA
replication initiation" evidence=IDA;TAS] [GO:0000082 "G1/S
transition of mitotic cell cycle" evidence=TAS] [GO:0000083
"regulation of transcription involved in G1/S phase of mitotic cell
cycle" evidence=TAS] [GO:0000216 "M/G1 transition of mitotic cell
cycle" evidence=TAS] [GO:0000278 "mitotic cell cycle" evidence=TAS]
[GO:0000722 "telomere maintenance via recombination" evidence=TAS]
[GO:0000723 "telomere maintenance" evidence=TAS] [GO:0032201
"telomere maintenance via semi-conservative replication"
evidence=TAS] [GO:0006269 "DNA replication, synthesis of RNA
primer" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0043231 "intracellular membrane-bounded organelle"
evidence=IDA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0005737 GO:GO:0005635 Reactome:REACT_115566 GO:GO:0019048
GO:GO:0005654 Reactome:REACT_21300 GO:GO:0005730 GO:GO:0000166
GO:GO:0046872 GO:GO:0003677 GO:GO:0008283 GO:GO:0003682
GO:GO:0051539 GO:GO:0006270 GO:GO:0003690 GO:GO:0001882
DrugBank:DB01073 SUPFAM:SSF53098 GO:GO:0016363 GO:GO:0000216
GO:GO:0000084 GO:GO:0008408 GO:GO:0017076 GO:GO:0006303
GO:GO:0000722 GO:GO:0000083 Reactome:REACT_383 GO:GO:0003887
KO:K02320 DrugBank:DB00631 GO:GO:0032201 GO:GO:0006273
GO:GO:0006269 GO:GO:0006272 eggNOG:COG0417 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
HOGENOM:HOG000163524 InterPro:IPR024647 Pfam:PF12254
TIGRFAMs:TIGR00592 EMBL:X06745 EMBL:AY275833 EMBL:M64481
IPI:IPI00220317 PIR:S00257 RefSeq:NP_058633.2 UniGene:Hs.567319
PDB:1K0P PDB:1K18 PDB:1N5G PDBsum:1K0P PDBsum:1K18 PDBsum:1N5G
ProteinModelPortal:P09884 SMR:P09884 IntAct:P09884
MINT:MINT-1517478 STRING:P09884 PhosphoSite:P09884 DMDM:60392197
PaxDb:P09884 PRIDE:P09884 Ensembl:ENST00000379059 GeneID:5422
KEGG:hsa:5422 UCSC:uc004dbl.3 CTD:5422 GeneCards:GC0XP024712
H-InvDB:HIX0028476 HGNC:HGNC:9173 HPA:CAB012274 HPA:HPA002947
MIM:312040 neXtProt:NX_P09884 PharmGKB:PA162399856
HOVERGEN:HBG080008 PhylomeDB:P09884 BindingDB:P09884
ChEMBL:CHEMBL1828 ChiTaRS:POLA1 EvolutionaryTrace:P09884
GenomeRNAi:5422 NextBio:20977 ArrayExpress:P09884 Bgee:P09884
CleanEx:HS_POLA1 Genevestigator:P09884 GO:GO:0019103 Uniprot:P09884
Length = 1462
Score = 1602 (569.0 bits), Expect = 2.7e-239, Sum P(3) = 2.7e-239
Identities = 335/704 (47%), Positives = 450/704 (63%)
Query: 560 IRITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYXXX-------XXXXXXX 612
++ITN+ GN++SRTLMGGRSERNEFLLLHAF+E +Y++PDKQ
Sbjct: 766 LQITNIAGNIMSRTLMGGRSERNEFLLLHAFYENNYIVPDKQIFRKPQQKLGDEDEEIDG 825
Query: 613 XXXXXXXXRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP----- 667
RKKAAY+GGLVL+PK GFYDKFI+L+DFNSLYPSIIQE+NICFTT+
Sbjct: 826 DTNKYKKGRKKAAYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTVQRVASE 885
Query: 668 -VRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDI 726
++ +D + + E LP+ ++ GILP EI+KLVE R+QVK LMKQ +L+ DL++QYDI
Sbjct: 886 AQKVTEDGEQEQIPE-LPDPSLEMGILPREIRKLVERRKQVKQLMKQQDLNPDLILQYDI 944
Query: 727 RQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTD 786
RQKALKLTANSMYGCLGF SRF+A+PLAALVT KGREIL++TK +V+ +N EVIYGDTD
Sbjct: 945 RQKALKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREILMHTKEMVQKMNLEVIYGDTD 1004
Query: 787 SLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVXXXXXXXXXXXXXXXXXXXXX 846
S+MI+ N + + VFK+GN++KSE NKLYK LE+DIDGV
Sbjct: 1005 SIMINTNSTNLEEVFKLGNKVKSEVNKLYKLLEIDIDGVFKSLLLLKKKKYAALVVEPTS 1064
Query: 847 NGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKI 906
+G + QE+KG+D+VRRDW LA + G FVI QIL +QS D ++NI + + +I
Sbjct: 1065 DGNYVTKQELKGLDIVRRDWCDLAKDTGNFVIGQILSDQSR-----DTIVENIQKRLIEI 1119
Query: 907 RTDLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQGDTISYII 966
++ NG VP++ EI K LTK P++Y D+K+LPHV VAL +N+ +K+K GDT+SY+I
Sbjct: 1120 GENVLNGSVPVSQFEINKALTKDPQDYPDKKSLPHVHVALWINSQGGRKVKAGDTVSYVI 1179
Query: 967 CEDGTSEAATQRAYNIEELKNNSKLKIDVNYYLSQQIHPVVTRLLEPIEGTDAVRIAECL 1026
C+DG++ A+QRAY E+L+ L ID YYL+QQIHPVV R+ EPI+G DAV IA L
Sbjct: 1180 CQDGSNLTASQRAYAPEQLQKQDNLTIDTQYYLAQQIHPVVARICEPIDGIDAVLIATWL 1239
Query: 1027 GLDTSLYRSQIKESIQQSEENILGVGE-AEEVKYQFCDKFEFTCMNPSCKQVNTVEAPTR 1085
GLD + +R ++++ + G + +E KY+ C++F+ C P+C N +
Sbjct: 1240 GLDPTQFRVHHYHKDEENDALLGGPAQLTDEEKYRDCERFKCPC--PTCGTENIYDNVFD 1297
Query: 1086 LSTHGVVFVLDECINPECKVPPYTYLPHLINKLSQDMNKYIVKYYEGWLKCEDPGCSDLT 1145
S + L C N +CK P T+ L NKL D+ ++I KYY+GWL CE+P C + T
Sbjct: 1298 GSGTDMEPSLYRCSNIDCKASPLTFTVQLSNKLIMDIRRFIKKYYDGWLICEEPTCRNRT 1357
Query: 1146 RRCPLGLKTR--LCTTCHKYKLHRVYTELQLYQQLSFFHYI----CDITKALTKSDTPSI 1199
R PL LC C K L Y++ LY QL F+ YI C + K T + +
Sbjct: 1358 RHLPLQFSRTGPLCPACMKATLQPEYSDKSLYTQLCFYRYIFDAECALEKLTTDHEKDKL 1417
Query: 1200 K---FDSETYMGYCKMKQHVERFLESSAYNIVDLKKLFS-CEEK 1239
K F + Y K+K E+FL S Y+ V+L KLF+ C K
Sbjct: 1418 KKQFFTPKVLQDYRKLKNTAEQFLSRSGYSEVNLSKLFAGCAVK 1461
Score = 545 (196.9 bits), Expect = 2.7e-239, Sum P(3) = 2.7e-239
Identities = 117/269 (43%), Positives = 164/269 (60%)
Query: 347 WEAIQTEPSTSEPQVHSRTADDS-LPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGK 405
W+ I E +S V D S LPL + ++VF ++LDA+ED Y QPG V+LFGK
Sbjct: 307 WD-IDQEGDSSF-SVQEVQVDSSHLPLVKGADEEQVFHFYWLDAYEDQYNQPGVVFLFGK 364
Query: 406 VFVKENNSHSSCCVIVQNIDRKIYLLPRSEHL------KTKEPVSIAQVYSEFDQ-IATQ 458
V+++ +H SCCV+V+NI+R +Y LPR + +T P+S+ VY EFD+ IAT+
Sbjct: 365 VWIESAETHVSCCVMVKNIERTLYFLPREMKIDLNTGKETGTPISMKDVYEEFDEKIATK 424
Query: 459 YKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKSSFL 518
YKI+ FKS+ +EK YAF +P VP+ SEYLEV+YSA+ P LP DL G+TFSHVFGT +S L
Sbjct: 425 YKIMKFKSKPVEKNYAFEIPDVPEKSEYLEVKYSAEMPQLPQDLKGETFSHVFGTNTSSL 484
Query: 519 ENLLLERKIKGPSWLEFPEAEKFPSRISWCKYEVQCNQMEKIR-ITNVCGNVL------S 571
E L+ RKIKGP WLE + +SWCK E + + + I +V L
Sbjct: 485 ELFLMNRKIKGPCWLEVKSPQLLNQPVSWCKVEAMALKPDLVNVIKDVSPPPLVVMAFSM 544
Query: 572 RTLMGGRSERNEFLLLHAFHEKSYVLPDK 600
+T+ ++ +NE + + A S+ L DK
Sbjct: 545 KTMQNAKNHQNEIIAMAALVHHSFAL-DK 572
Score = 200 (75.5 bits), Expect = 2.7e-239, Sum P(3) = 2.7e-239
Identities = 52/150 (34%), Positives = 73/150 (48%)
Query: 46 RAKRQKIDKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEXXX 105
RA+R+K K + A ++LK K G K+KYE VYEEV E++Y++ V RQ+
Sbjct: 20 RARREKKSKKGRQEALERLKKAKA-GEKYKYEVEDFTGVYEEVDEEQYSKLVQARQDDDW 78
Query: 106 XXXXXXXXYVEDGREIFDDDIEDVPQXXXXXXXXXXXXNIQNPNAK-------GDIQKLL 158
YVEDGREIFDDD+ED N N K +I+ +
Sbjct: 79 IVDDDGIGYVEDGREIFDDDLEDDALDADEKGKDGKARNKDKRNVKKLAVTKPNNIKSMF 138
Query: 159 ANMPVKKKKKEEVQLNNDDVLADLLSEVNT 188
KK + V L+ D +L D+L ++NT
Sbjct: 139 IACAGKKTADKAVDLSKDGLLGDILQDLNT 168
Score = 50 (22.7 bits), Expect = 4.8e-64, Sum P(3) = 4.8e-64
Identities = 22/83 (26%), Positives = 36/83 (43%)
Query: 848 GKMICSQEIKGVDVVR-RDW--SQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMK 904
G+MIC EI +++R + + S+L + K I E YS +L + EH
Sbjct: 687 GRMICDVEISAKELIRCKSYHLSELVQQILKTERVVIPMENIQNMYSESSQLLYLLEHTW 746
Query: 905 KIRTDLDNGFVPLTLLEITKQLT 927
K + L +L + Q+T
Sbjct: 747 KDAKFILQIMCELNVLPLALQIT 769
Score = 47 (21.6 bits), Expect = 9.9e-11, Sum P(2) = 9.9e-11
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 372 LATDHENKKVFRMFFLD-AFEDIYKQPGTVYLF 403
L TDHE K+ + FF +D K T F
Sbjct: 1408 LTTDHEKDKLKKQFFTPKVLQDYRKLKNTAEQF 1440
Score = 39 (18.8 bits), Expect = 6.6e-10, Sum P(2) = 6.6e-10
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 1203 SETYMGYCKMKQHVERFL 1220
+ET++ C M +++ER L
Sbjct: 370 AETHVSCCVMVKNIERTL 387
>RGD|621816 [details] [associations]
symbol:Pola1 "polymerase (DNA directed), alpha 1, catalytic
subunit" species:10116 "Rattus norvegicus" [GO:0000084 "S phase of
mitotic cell cycle" evidence=ISO;ISS] [GO:0000166 "nucleotide
binding" evidence=IEA;ISO;ISS] [GO:0000731 "DNA synthesis involved
in DNA repair" evidence=ISO;ISS] [GO:0000785 "chromatin"
evidence=ISO;ISS] [GO:0001882 "nucleoside binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA;ISO;ISS] [GO:0003682
"chromatin binding" evidence=ISO;ISS] [GO:0003690 "double-stranded
DNA binding" evidence=IDA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA;ISO;ISS;IDA;IMP] [GO:0003896 "DNA primase
activity" evidence=ISO;ISS] [GO:0005634 "nucleus" evidence=ISO;ISS]
[GO:0005635 "nuclear envelope" evidence=ISO;ISS] [GO:0005654
"nucleoplasm" evidence=ISO;ISS] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IC;ISO;ISS;IDA] [GO:0005730
"nucleolus" evidence=ISO;ISS] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA;ISO;ISS;IMP] [GO:0006269
"DNA replication, synthesis of RNA primer" evidence=ISO;ISS]
[GO:0006270 "DNA replication initiation" evidence=ISO;ISS]
[GO:0006271 "DNA strand elongation involved in DNA replication"
evidence=ISO;ISS] [GO:0006272 "leading strand elongation"
evidence=ISO;ISS] [GO:0006273 "lagging strand elongation"
evidence=ISO;ISS] [GO:0006281 "DNA repair" evidence=ISO;ISS]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IBA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=ISO;ISS;IBA] [GO:0008283 "cell
proliferation" evidence=ISO;ISS] [GO:0008408 "3'-5' exonuclease
activity" evidence=IBA] [GO:0016363 "nuclear matrix"
evidence=ISO;ISS] [GO:0017076 "purine nucleotide binding"
evidence=IMP] [GO:0019103 "pyrimidine nucleotide binding"
evidence=IMP] [GO:0019985 "translesion synthesis" evidence=IBA]
[GO:0043231 "intracellular membrane-bounded organelle"
evidence=ISO] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=ISO]
[GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR015088
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 Pfam:PF08996
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 RGD:621816
GO:GO:0005737 GO:GO:0005635 GO:GO:0005654 GO:GO:0005730
GO:GO:0046872 GO:GO:0008283 GO:GO:0000785 GO:GO:0003682
GO:GO:0051539 GO:GO:0006270 GO:GO:0003690 GO:GO:0001882
SUPFAM:SSF53098 GO:GO:0016363 GO:GO:0000084 GO:GO:0008408
GO:GO:0017076 GO:GO:0006303 GO:GO:0003896 GO:GO:0003887 KO:K02320
GO:GO:0006273 GO:GO:0006269 GO:GO:0006272 eggNOG:COG0417
GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
HOGENOM:HOG000163524 InterPro:IPR024647 Pfam:PF12254
TIGRFAMs:TIGR00592 CTD:5422 HOVERGEN:HBG080008 GO:GO:0019103
OrthoDB:EOG43XV2M EMBL:AJ011605 IPI:IPI00764174 RefSeq:NP_445931.1
UniGene:Rn.187125 UniGene:Rn.92345 ProteinModelPortal:O89042
SMR:O89042 STRING:O89042 PhosphoSite:O89042 PRIDE:O89042
GeneID:85241 KEGG:rno:85241 InParanoid:O89042 NextBio:617296
ArrayExpress:O89042 Genevestigator:O89042
GermOnline:ENSRNOG00000013322 Uniprot:O89042
Length = 1451
Score = 1578 (560.5 bits), Expect = 3.5e-239, Sum P(4) = 3.5e-239
Identities = 338/690 (48%), Positives = 442/690 (64%)
Query: 560 IRITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYXXX-------XXXXXXX 612
++ITN+ GN++SRTLMGGRSERNEFLLLHAF+E +Y++PDKQ
Sbjct: 773 LQITNIAGNIMSRTLMGGRSERNEFLLLHAFYENNYIVPDKQIFRKPQQKPGDEDEEIDG 832
Query: 613 XXXXXXXXRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP----- 667
RKKAAY+GGLVL+PK GFYDKFI+L+DFNSLYPSIIQE+NICFTT+
Sbjct: 833 DTNKYKKGRKKAAYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTVQRVASE 892
Query: 668 -VRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDI 726
++ +D + + E LP+ +D GILP EI+KLVE R+QVK LMKQ +L+ DL++QYDI
Sbjct: 893 TLKATEDEEQEQIPE-LPDPNLDMGILPREIRKLVERRKQVKQLMKQQDLNPDLVLQYDI 951
Query: 727 RQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTD 786
RQKALKLTANSMYGCLGF SRF+A+PLAALVT KGREIL++TK +V+ +N EVIYGDTD
Sbjct: 952 RQKALKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREILMHTKEMVQKMNLEVIYGDTD 1011
Query: 787 SLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVXXXXXXXXXXXXXXXXXXXXX 846
S+MI+ N + + VFK+GN++K+E NKLYK LE+DIDGV
Sbjct: 1012 SIMINTNSTNLEEVFKLGNKVKNEVNKLYKLLEIDIDGVFKSLLLLKKKKYAALVVEPTS 1071
Query: 847 NGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKI 906
+G I QE+KG+D+VRRDW LA + G FVI QIL +QS D ++NI + + +I
Sbjct: 1072 DGNYITKQELKGLDIVRRDWCDLAKDTGNFVIGQILSDQSR-----DTIVENIQKRLIEI 1126
Query: 907 RTDLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQGDTISYII 966
++ NG VP++ EI K LTK P++Y D+K+LPHV VAL +N+ +K+K GDT+SY+I
Sbjct: 1127 GENVLNGSVPVSQFEINKALTKDPQDYPDKKSLPHVHVALWINSQGGRKVKAGDTVSYVI 1186
Query: 967 CEDGTSEAATQRAYNIEELKNNSKLKIDVNYYLSQQIHPVVTRLLEPIEGTDAVRIAECL 1026
C+DG++ ATQRAY E+L+ L ID YYL+QQIHPVV R+ EPI+G DAV IA L
Sbjct: 1187 CQDGSNLPATQRAYAPEQLQKQDNLAIDTQYYLAQQIHPVVARICEPIDGIDAVLIALWL 1246
Query: 1027 GLDTSLYRSQIKESIQQSEEN--ILGVGEAE---EVKYQFCDKFEFTCMNPSCKQVNTVE 1081
GLD++ +R + EEN +LG G A+ E KY+ C+KF+ C+ PSC N +
Sbjct: 1247 GLDSTQFRVH---QYHKDEENDALLG-GPAQLTDEEKYKDCEKFK--CLCPSCGTENIYD 1300
Query: 1082 APTRLSTHGVVFVLDECINPECKVPPYTYLPHLINKLSQDMNKYIVKYYEGWLKCEDPGC 1141
S + L+ C N +CK P T++ L NKL D+ + I KYY+GWL CE+P C
Sbjct: 1301 NVFEGSGMDMEPSLNRCSNIDCKASPATFMVQLSNKLIMDIRRCIKKYYDGWLICEEPTC 1360
Query: 1142 SDLTRRCPLGLKTR--LCTTCHKYKLHRVYTELQLYQQLSFFHYICDITKALTK---SDT 1196
+ RR PL LC C K L Y++ LY QL F+ YI D AL K +
Sbjct: 1361 RNRIRRLPLHFSRNGPLCPACMKAVLRPEYSDKSLYTQLCFYRYIFDADCALEKLPEHEK 1420
Query: 1197 PSIK---FDSETYMGYCKMKQHVERFLESS 1223
+K F Y K+K E FL S
Sbjct: 1421 DKLKKQFFTPRVLQDYRKVKNIAEHFLSWS 1450
Score = 526 (190.2 bits), Expect = 3.5e-239, Sum P(4) = 3.5e-239
Identities = 104/226 (46%), Positives = 149/226 (65%)
Query: 347 WEAIQTEPST---SEPQVHSRTADDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLF 403
W+ Q + ++ E QV S + LPL ++++VF+ ++LDA+ED Y QPG V+LF
Sbjct: 314 WDIDQKDENSFLLQEVQVDS----NHLPLVKGADDEQVFQFYWLDAYEDPYNQPGVVFLF 369
Query: 404 GKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHL------KTKEPVSIAQVYSEFD-QIA 456
GKV+V+ +H SCCV+V+NI+R +Y LPR + +T P+++ VY EFD +I+
Sbjct: 370 GKVWVESAKTHVSCCVMVKNIERTLYFLPREMKIDLNTGKETATPITMKDVYEEFDSKIS 429
Query: 457 TQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKSS 516
+YKI+ FKS+ +EK YAF +P VP+ SEYLEVRYSA+ P LP +L G+TFSHVFGT +S
Sbjct: 430 AKYKIMKFKSKIVEKNYAFEIPDVPEKSEYLEVRYSAEVPQLPQNLKGETFSHVFGTNTS 489
Query: 517 FLENLLLERKIKGPSWLEFPEAEKFPSRISWCKYEVQCNQMEKIRI 562
LE L+ RKIKGP WLE + ISWCK+E + + + +
Sbjct: 490 SLELFLMNRKIKGPCWLEVKNPQLLNQPISWCKFEAMALKPDLVNV 535
Score = 205 (77.2 bits), Expect = 3.5e-239, Sum P(4) = 3.5e-239
Identities = 54/157 (34%), Positives = 81/157 (51%)
Query: 46 RAKRQKIDKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEXXX 105
RA+R+K K + A ++LK K G K+KYE +VYEEV E++Y++ V RQ+
Sbjct: 26 RARREKKSKKGRQEALERLKKAKA-GEKYKYEVEDLTSVYEEVDEEQYSKLVQARQDDDW 84
Query: 106 XXXXXXXXYVEDGREIFDDDIED-----VPQXXXXXXXXXXXXNIQNPNAK--GDIQKLL 158
YVEDGREIFDDD+ED + +++ P+ +I+ +
Sbjct: 85 IVDDDGIGYVEDGREIFDDDLEDDALDTCGEGSDGKAHRKDRKDVKKPSVTKPNNIKAMF 144
Query: 159 ANMPVKKKKKEEVQLNNDDVLADLLSEVNTT---IAP 192
KK + V L+ DD+L D+L ++NT IAP
Sbjct: 145 IASAGKKTTDKTVDLSKDDLLGDILQDLNTETPQIAP 181
Score = 50 (22.7 bits), Expect = 3.5e-239, Sum P(4) = 3.5e-239
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 247 IKSNDSVMEVEMNVAEQSKEEPVDDGLWEQ 276
I+ D + M+ E +EEPV +W+Q
Sbjct: 253 IEFEDGDFDEPMDTEEVDEEEPVTAKIWDQ 282
Score = 43 (20.2 bits), Expect = 3.5e-62, Sum P(4) = 3.5e-62
Identities = 21/83 (25%), Positives = 35/83 (42%)
Query: 848 GKMICSQEIKGVDVVR-RDW--SQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMK 904
G+MIC EI +++ + + S+L + K I E YS L + EH+
Sbjct: 694 GRMICDVEISVKELIHCKSYHLSELVQQILKTERIVIPTENIRNMYSEPSHLLYLLEHIW 753
Query: 905 KIRTDLDNGFVPLTLLEITKQLT 927
K + L +L + Q+T
Sbjct: 754 KDARFILQIMCELNVLPLALQIT 776
Score = 38 (18.4 bits), Expect = 1.9e-10, Sum P(3) = 1.9e-10
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 366 ADDSLPLATDHENKKVFRMFF 386
AD +L +HE K+ + FF
Sbjct: 1408 ADCALEKLPEHEKDKLKKQFF 1428
Score = 37 (18.1 bits), Expect = 1.1e-183, Sum P(3) = 1.1e-183
Identities = 14/50 (28%), Positives = 23/50 (46%)
Query: 331 SPPPQVVEKKEHKCAEWEAIQTEPSTSEPQVHSRTADDSLPLATDHENKK 380
+PPP ++ KK+ T S + VH+ TA S +A+ K+
Sbjct: 180 APPPVLIPKKKRS--------TGASPNPFSVHTATAVPSGKIASPVSRKE 221
>UNIPROTKB|O89042 [details] [associations]
symbol:Pola1 "DNA polymerase alpha catalytic subunit"
species:10116 "Rattus norvegicus" [GO:0001882 "nucleoside binding"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
RGD:621816 GO:GO:0005737 GO:GO:0005635 GO:GO:0005654 GO:GO:0005730
GO:GO:0046872 GO:GO:0008283 GO:GO:0000785 GO:GO:0003682
GO:GO:0051539 GO:GO:0006270 GO:GO:0003690 GO:GO:0001882
SUPFAM:SSF53098 GO:GO:0016363 GO:GO:0000084 GO:GO:0008408
GO:GO:0017076 GO:GO:0006303 GO:GO:0003896 GO:GO:0003887 KO:K02320
GO:GO:0006273 GO:GO:0006269 GO:GO:0006272 eggNOG:COG0417
GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
HOGENOM:HOG000163524 InterPro:IPR024647 Pfam:PF12254
TIGRFAMs:TIGR00592 CTD:5422 HOVERGEN:HBG080008 GO:GO:0019103
OrthoDB:EOG43XV2M EMBL:AJ011605 IPI:IPI00764174 RefSeq:NP_445931.1
UniGene:Rn.187125 UniGene:Rn.92345 ProteinModelPortal:O89042
SMR:O89042 STRING:O89042 PhosphoSite:O89042 PRIDE:O89042
GeneID:85241 KEGG:rno:85241 InParanoid:O89042 NextBio:617296
ArrayExpress:O89042 Genevestigator:O89042
GermOnline:ENSRNOG00000013322 Uniprot:O89042
Length = 1451
Score = 1578 (560.5 bits), Expect = 3.5e-239, Sum P(4) = 3.5e-239
Identities = 338/690 (48%), Positives = 442/690 (64%)
Query: 560 IRITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYXXX-------XXXXXXX 612
++ITN+ GN++SRTLMGGRSERNEFLLLHAF+E +Y++PDKQ
Sbjct: 773 LQITNIAGNIMSRTLMGGRSERNEFLLLHAFYENNYIVPDKQIFRKPQQKPGDEDEEIDG 832
Query: 613 XXXXXXXXRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP----- 667
RKKAAY+GGLVL+PK GFYDKFI+L+DFNSLYPSIIQE+NICFTT+
Sbjct: 833 DTNKYKKGRKKAAYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTVQRVASE 892
Query: 668 -VRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDI 726
++ +D + + E LP+ +D GILP EI+KLVE R+QVK LMKQ +L+ DL++QYDI
Sbjct: 893 TLKATEDEEQEQIPE-LPDPNLDMGILPREIRKLVERRKQVKQLMKQQDLNPDLVLQYDI 951
Query: 727 RQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTD 786
RQKALKLTANSMYGCLGF SRF+A+PLAALVT KGREIL++TK +V+ +N EVIYGDTD
Sbjct: 952 RQKALKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREILMHTKEMVQKMNLEVIYGDTD 1011
Query: 787 SLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVXXXXXXXXXXXXXXXXXXXXX 846
S+MI+ N + + VFK+GN++K+E NKLYK LE+DIDGV
Sbjct: 1012 SIMINTNSTNLEEVFKLGNKVKNEVNKLYKLLEIDIDGVFKSLLLLKKKKYAALVVEPTS 1071
Query: 847 NGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKI 906
+G I QE+KG+D+VRRDW LA + G FVI QIL +QS D ++NI + + +I
Sbjct: 1072 DGNYITKQELKGLDIVRRDWCDLAKDTGNFVIGQILSDQSR-----DTIVENIQKRLIEI 1126
Query: 907 RTDLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQGDTISYII 966
++ NG VP++ EI K LTK P++Y D+K+LPHV VAL +N+ +K+K GDT+SY+I
Sbjct: 1127 GENVLNGSVPVSQFEINKALTKDPQDYPDKKSLPHVHVALWINSQGGRKVKAGDTVSYVI 1186
Query: 967 CEDGTSEAATQRAYNIEELKNNSKLKIDVNYYLSQQIHPVVTRLLEPIEGTDAVRIAECL 1026
C+DG++ ATQRAY E+L+ L ID YYL+QQIHPVV R+ EPI+G DAV IA L
Sbjct: 1187 CQDGSNLPATQRAYAPEQLQKQDNLAIDTQYYLAQQIHPVVARICEPIDGIDAVLIALWL 1246
Query: 1027 GLDTSLYRSQIKESIQQSEEN--ILGVGEAE---EVKYQFCDKFEFTCMNPSCKQVNTVE 1081
GLD++ +R + EEN +LG G A+ E KY+ C+KF+ C+ PSC N +
Sbjct: 1247 GLDSTQFRVH---QYHKDEENDALLG-GPAQLTDEEKYKDCEKFK--CLCPSCGTENIYD 1300
Query: 1082 APTRLSTHGVVFVLDECINPECKVPPYTYLPHLINKLSQDMNKYIVKYYEGWLKCEDPGC 1141
S + L+ C N +CK P T++ L NKL D+ + I KYY+GWL CE+P C
Sbjct: 1301 NVFEGSGMDMEPSLNRCSNIDCKASPATFMVQLSNKLIMDIRRCIKKYYDGWLICEEPTC 1360
Query: 1142 SDLTRRCPLGLKTR--LCTTCHKYKLHRVYTELQLYQQLSFFHYICDITKALTK---SDT 1196
+ RR PL LC C K L Y++ LY QL F+ YI D AL K +
Sbjct: 1361 RNRIRRLPLHFSRNGPLCPACMKAVLRPEYSDKSLYTQLCFYRYIFDADCALEKLPEHEK 1420
Query: 1197 PSIK---FDSETYMGYCKMKQHVERFLESS 1223
+K F Y K+K E FL S
Sbjct: 1421 DKLKKQFFTPRVLQDYRKVKNIAEHFLSWS 1450
Score = 526 (190.2 bits), Expect = 3.5e-239, Sum P(4) = 3.5e-239
Identities = 104/226 (46%), Positives = 149/226 (65%)
Query: 347 WEAIQTEPST---SEPQVHSRTADDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLF 403
W+ Q + ++ E QV S + LPL ++++VF+ ++LDA+ED Y QPG V+LF
Sbjct: 314 WDIDQKDENSFLLQEVQVDS----NHLPLVKGADDEQVFQFYWLDAYEDPYNQPGVVFLF 369
Query: 404 GKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHL------KTKEPVSIAQVYSEFD-QIA 456
GKV+V+ +H SCCV+V+NI+R +Y LPR + +T P+++ VY EFD +I+
Sbjct: 370 GKVWVESAKTHVSCCVMVKNIERTLYFLPREMKIDLNTGKETATPITMKDVYEEFDSKIS 429
Query: 457 TQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKSS 516
+YKI+ FKS+ +EK YAF +P VP+ SEYLEVRYSA+ P LP +L G+TFSHVFGT +S
Sbjct: 430 AKYKIMKFKSKIVEKNYAFEIPDVPEKSEYLEVRYSAEVPQLPQNLKGETFSHVFGTNTS 489
Query: 517 FLENLLLERKIKGPSWLEFPEAEKFPSRISWCKYEVQCNQMEKIRI 562
LE L+ RKIKGP WLE + ISWCK+E + + + +
Sbjct: 490 SLELFLMNRKIKGPCWLEVKNPQLLNQPISWCKFEAMALKPDLVNV 535
Score = 205 (77.2 bits), Expect = 3.5e-239, Sum P(4) = 3.5e-239
Identities = 54/157 (34%), Positives = 81/157 (51%)
Query: 46 RAKRQKIDKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEXXX 105
RA+R+K K + A ++LK K G K+KYE +VYEEV E++Y++ V RQ+
Sbjct: 26 RARREKKSKKGRQEALERLKKAKA-GEKYKYEVEDLTSVYEEVDEEQYSKLVQARQDDDW 84
Query: 106 XXXXXXXXYVEDGREIFDDDIED-----VPQXXXXXXXXXXXXNIQNPNAK--GDIQKLL 158
YVEDGREIFDDD+ED + +++ P+ +I+ +
Sbjct: 85 IVDDDGIGYVEDGREIFDDDLEDDALDTCGEGSDGKAHRKDRKDVKKPSVTKPNNIKAMF 144
Query: 159 ANMPVKKKKKEEVQLNNDDVLADLLSEVNTT---IAP 192
KK + V L+ DD+L D+L ++NT IAP
Sbjct: 145 IASAGKKTTDKTVDLSKDDLLGDILQDLNTETPQIAP 181
Score = 50 (22.7 bits), Expect = 3.5e-239, Sum P(4) = 3.5e-239
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 247 IKSNDSVMEVEMNVAEQSKEEPVDDGLWEQ 276
I+ D + M+ E +EEPV +W+Q
Sbjct: 253 IEFEDGDFDEPMDTEEVDEEEPVTAKIWDQ 282
Score = 43 (20.2 bits), Expect = 3.5e-62, Sum P(4) = 3.5e-62
Identities = 21/83 (25%), Positives = 35/83 (42%)
Query: 848 GKMICSQEIKGVDVVR-RDW--SQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMK 904
G+MIC EI +++ + + S+L + K I E YS L + EH+
Sbjct: 694 GRMICDVEISVKELIHCKSYHLSELVQQILKTERIVIPTENIRNMYSEPSHLLYLLEHIW 753
Query: 905 KIRTDLDNGFVPLTLLEITKQLT 927
K + L +L + Q+T
Sbjct: 754 KDARFILQIMCELNVLPLALQIT 776
Score = 38 (18.4 bits), Expect = 1.9e-10, Sum P(3) = 1.9e-10
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 366 ADDSLPLATDHENKKVFRMFF 386
AD +L +HE K+ + FF
Sbjct: 1408 ADCALEKLPEHEKDKLKKQFF 1428
Score = 37 (18.1 bits), Expect = 1.1e-183, Sum P(3) = 1.1e-183
Identities = 14/50 (28%), Positives = 23/50 (46%)
Query: 331 SPPPQVVEKKEHKCAEWEAIQTEPSTSEPQVHSRTADDSLPLATDHENKK 380
+PPP ++ KK+ T S + VH+ TA S +A+ K+
Sbjct: 180 APPPVLIPKKKRS--------TGASPNPFSVHTATAVPSGKIASPVSRKE 221
>MGI|MGI:99660 [details] [associations]
symbol:Pola1 "polymerase (DNA directed), alpha 1"
species:10090 "Mus musculus" [GO:0000084 "S phase of mitotic cell
cycle" evidence=ISO] [GO:0000166 "nucleotide binding" evidence=ISO]
[GO:0001882 "nucleoside binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO]
[GO:0003682 "chromatin binding" evidence=ISO] [GO:0003690
"double-stranded DNA binding" evidence=ISO] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISO;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005635 "nuclear envelope" evidence=ISO]
[GO:0005654 "nucleoplasm" evidence=ISO] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=ISO;IDA] [GO:0005730
"nucleolus" evidence=ISO] [GO:0006139 "nucleobase-containing
compound metabolic process" evidence=IEA] [GO:0006260 "DNA
replication" evidence=ISO;IMP;IDA] [GO:0006269 "DNA replication,
synthesis of RNA primer" evidence=ISO] [GO:0006270 "DNA replication
initiation" evidence=ISO] [GO:0006271 "DNA strand elongation
involved in DNA replication" evidence=ISO] [GO:0006272 "leading
strand elongation" evidence=ISO] [GO:0006273 "lagging strand
elongation" evidence=ISO] [GO:0006303 "double-strand break repair
via nonhomologous end joining" evidence=ISO;IBA] [GO:0008283 "cell
proliferation" evidence=ISO] [GO:0008408 "3'-5' exonuclease
activity" evidence=IBA] [GO:0016363 "nuclear matrix" evidence=ISO]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0017076 "purine
nucleotide binding" evidence=ISO] [GO:0019103 "pyrimidine
nucleotide binding" evidence=ISO] [GO:0019985 "translesion
synthesis" evidence=IBA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0046982 "protein heterodimerization activity"
evidence=IPI] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] [GO:0090305 "nucleic acid phosphodiester bond
hydrolysis" evidence=IBA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
MGI:MGI:99660 GO:GO:0005737 GO:GO:0005635 GO:GO:0005654
GO:GO:0005730 GO:GO:0000166 GO:GO:0046872 GO:GO:0003677
GO:GO:0008283 GO:GO:0000785 GO:GO:0003682 GO:GO:0051539
GO:GO:0006270 GO:GO:0003690 GO:GO:0001882 SUPFAM:SSF53098
GO:GO:0016363 GO:GO:0000084 GO:GO:0008408 GO:GO:0017076
GO:GO:0006303 GO:GO:0003896 GO:GO:0003887 KO:K02320 GO:GO:0006273
GO:GO:0006269 GO:GO:0006272 eggNOG:COG0417 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
HOGENOM:HOG000163524 InterPro:IPR024647 Pfam:PF12254
TIGRFAMs:TIGR00592 GeneTree:ENSGT00550000074891 CTD:5422
HOVERGEN:HBG080008 GO:GO:0019103 EMBL:D13543 EMBL:D17384
IPI:IPI00114051 PIR:S45628 RefSeq:NP_032918.1 UniGene:Mm.1923
ProteinModelPortal:P33609 SMR:P33609 IntAct:P33609 STRING:P33609
PhosphoSite:P33609 PaxDb:P33609 PRIDE:P33609
Ensembl:ENSMUST00000006856 GeneID:18968 KEGG:mmu:18968
InParanoid:P33609 OrthoDB:EOG43XV2M BindingDB:P33609
ChEMBL:CHEMBL2797 NextBio:295308 Bgee:P33609 CleanEx:MM_POLA1
Genevestigator:P33609 GermOnline:ENSMUSG00000006678 Uniprot:P33609
Length = 1465
Score = 1597 (567.2 bits), Expect = 1.5e-238, Sum P(3) = 1.5e-238
Identities = 344/702 (49%), Positives = 449/702 (63%)
Query: 560 IRITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYXXX-------XXXXXXX 612
++ITN+ GN++SRTLMGGRSERNEFLLLHAF+E +Y++PDKQ
Sbjct: 770 LQITNIAGNIMSRTLMGGRSERNEFLLLHAFYENNYIVPDKQIFRKPQQKLGDEDEEIDG 829
Query: 613 XXXXXXXXRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP----- 667
RKKA Y+GGLVL+PK GFYDKFI+L+DFNSLYPSIIQE+NICFTT+
Sbjct: 830 DTNKYKKGRKKATYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTVQRVTSE 889
Query: 668 -VRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDI 726
+ +D + + E LP+ ++ GILP EI+KLVE R+QVK LMKQ +L+ DL++QYDI
Sbjct: 890 VQKATEDEEQEQIPE-LPDPNLEMGILPREIRKLVERRKQVKQLMKQQDLNPDLVLQYDI 948
Query: 727 RQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTD 786
RQKALKLTANSMYGCLGF SRF+A+PLAALVT KGREIL++TK +V+ +N EVIYGDTD
Sbjct: 949 RQKALKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREILMHTKDMVQKMNLEVIYGDTD 1008
Query: 787 SLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVXXXXXXXXXXXXXXXXXXXXX 846
S+MI+ N + + VFK+GN++KSE NKLYK LE+DID V
Sbjct: 1009 SIMINTNSTNLEEVFKLGNKVKSEVNKLYKLLEIDIDAVFKSLLLLKKKKYAALVVEPTS 1068
Query: 847 NGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKI 906
+G I QE+KG+D+VRRDW LA + G FVI QIL +QS D ++NI + + +I
Sbjct: 1069 DGNYITKQELKGLDIVRRDWCDLAKDTGNFVIGQILSDQSR-----DTIVENIQKRLIEI 1123
Query: 907 RTDLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQGDTISYII 966
++ NG VP++ EI K LTK P++Y DRK+LPHV VAL +N+ +K+K GDT+SY+I
Sbjct: 1124 GENVLNGSVPVSQFEINKALTKDPQDYPDRKSLPHVHVALWINSQGGRKVKAGDTVSYVI 1183
Query: 967 CEDGTSEAATQRAYNIEELKNNSKLKIDVNYYLSQQIHPVVTRLLEPIEGTDAVRIAECL 1026
C+DG++ ATQRAY E+L+ L ID YYL+QQIHPVV R+ EPI+G DAV IA L
Sbjct: 1184 CQDGSNLTATQRAYAPEQLQKLDNLAIDTQYYLAQQIHPVVARICEPIDGIDAVLIALWL 1243
Query: 1027 GLDTSLYRSQIKESIQQSEEN--ILGVGEAE---EVKYQFCDKFEFTCMNPSCKQVNTVE 1081
GLD++ +R + EEN +LG G A+ E KY+ C+KF+ C+ PSC N +
Sbjct: 1244 GLDSTQFRVH---QYHKDEENDALLG-GPAQLTDEEKYKDCEKFK--CLCPSCGTENIYD 1297
Query: 1082 APTRLSTHGVVFVLDECINPECKVPPYTYLPHLINKLSQDMNKYIVKYYEGWLKCEDPGC 1141
S + L C N +CKV P T++ L NKL D+ + I KYY+GWL CE+P C
Sbjct: 1298 NVFEGSGLDMEPSLYRCSNVDCKVSPLTFMVQLSNKLIMDIRRCIKKYYDGWLICEEPTC 1357
Query: 1142 SDLTRRCPLGLKTR--LCTTCHKYKLHRVYTELQLYQQLSFFHYICDITKAL---TKSDT 1196
RR PL LC C K L Y++ LY QL F+ YI D AL T+ +
Sbjct: 1358 CSRLRRLPLHFSRNGPLCPVCMKAVLRPEYSDKSLYTQLCFYRYIFDADCALEKLTEHEK 1417
Query: 1197 PSIK---FDSETYMGYCKMKQHVERFLESSAYNIVDLKKLFS 1235
+K F Y K+K E+FL S Y+ V+L KLF+
Sbjct: 1418 DKLKKQFFPLRVLQDYRKVKNIAEQFLSWSGYSEVNLSKLFA 1459
Score = 538 (194.4 bits), Expect = 1.5e-238, Sum P(3) = 1.5e-238
Identities = 118/269 (43%), Positives = 169/269 (62%)
Query: 347 WEAIQTEPST-SEPQVHSRTADDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGK 405
W+ Q + S E QV S +LPL ++++VF+ ++LDA+ED Y QPG V+LFGK
Sbjct: 313 WDIDQDDESIPQEVQVDS----SNLPLVKGADDEQVFQFYWLDAYEDPYNQPGVVFLFGK 368
Query: 406 VFVKENNSHSSCCVIVQNIDRKIYLLPRSEH--LKT-KE---PVSIAQVYSEFD-QIATQ 458
V+++ +H SCCV+V+NI+R +Y LPR L T KE PV++ VY EFD +I+ +
Sbjct: 369 VWIESVKTHVSCCVMVKNIERTLYFLPREMKFDLNTGKETAIPVTMKDVYEEFDSKISAK 428
Query: 459 YKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKSSFL 518
YKI+ FKS+ +EK YAF +P VP+ SEYLEVRYSA+ P LP +L G+TFSHVFGT +S L
Sbjct: 429 YKIMKFKSKIVEKNYAFEIPDVPEKSEYLEVRYSAEVPQLPQNLKGETFSHVFGTNTSSL 488
Query: 519 ENLLLERKIKGPSWLEFPEAEKFPSRISWCKYEVQCNQMEKIRITNVCGN----VLS--- 571
E L+ RKIKGP WLE + ISWCK+EV + + + + V+S
Sbjct: 489 ELFLMNRKIKGPCWLEVKNPQLLNQPISWCKFEVMALKPDLVNVIKDVSPPPLVVMSFSM 548
Query: 572 RTLMGGRSERNEFLLLHAFHEKSYVLPDK 600
+T+ ++ ++E + + A S+ L DK
Sbjct: 549 KTMQNVQNHQHEIIAMAALVHHSFAL-DK 576
Score = 205 (77.2 bits), Expect = 1.5e-238, Sum P(3) = 1.5e-238
Identities = 52/153 (33%), Positives = 79/153 (51%)
Query: 46 RAKRQKIDKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEXXX 105
RA+R+K K + A ++LK K G K+KYE +VYEEV E++Y++ V RQ+
Sbjct: 26 RARREKKSKKGRQEALERLKKAKA-GEKYKYEVEDLTSVYEEVDEEQYSKLVQARQDDDW 84
Query: 106 XXXXXXXXYVEDGREIFDDDIED-----VPQXXXXXXXXXXXXNIQNPNAK--GDIQKLL 158
YVEDGREIFDDD+ED + +++ P+ +I+ +
Sbjct: 85 IVDDDGIGYVEDGREIFDDDLEDDALDTCGKGSDGKAHRKDRKDVKKPSVTKPNNIKAMF 144
Query: 159 ANMPVKKKKKEEVQLNNDDVLADLLSEVNTTIA 191
KK + V L+ DD+L D+L ++NT A
Sbjct: 145 IASAGKKTTDKAVDLSKDDLLGDILQDLNTETA 177
Score = 47 (21.6 bits), Expect = 2.9e-11, Sum P(2) = 2.9e-11
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 366 ADDSLPLATDHENKKVFRMFF-LDAFEDIYK 395
AD +L T+HE K+ + FF L +D K
Sbjct: 1405 ADCALEKLTEHEKDKLKKQFFPLRVLQDYRK 1435
Score = 45 (20.9 bits), Expect = 2.9e-63, Sum P(3) = 2.9e-63
Identities = 21/83 (25%), Positives = 35/83 (42%)
Query: 848 GKMICSQEIKGVDVVR-RDW--SQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMK 904
G+MIC EI +++ + + S+L + K I E YS L + EH+
Sbjct: 691 GRMICDVEISAKELIHCKSYHLSELVQQILKTERIVIPTENIRNMYSESSYLLYLLEHIW 750
Query: 905 KIRTDLDNGFVPLTLLEITKQLT 927
K + L +L + Q+T
Sbjct: 751 KDARFILQIMCELNVLPLALQIT 773
>UNIPROTKB|Q59J88 [details] [associations]
symbol:Q59J88 "DNA polymerase" species:8517 "Iguana iguana"
[GO:0000084 "S phase of mitotic cell cycle" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=ISS] [GO:0003677 "DNA
binding" evidence=ISS] [GO:0003682 "chromatin binding"
evidence=ISS] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005635
"nuclear envelope" evidence=ISS] [GO:0005654 "nucleoplasm"
evidence=ISS] [GO:0005658 "alpha DNA polymerase:primase complex"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0006269 "DNA replication,
synthesis of RNA primer" evidence=ISS] [GO:0006270 "DNA replication
initiation" evidence=ISS] [GO:0006271 "DNA strand elongation
involved in DNA replication" evidence=ISS] [GO:0006272 "leading
strand elongation" evidence=ISS] [GO:0006273 "lagging strand
elongation" evidence=ISS] [GO:0006303 "double-strand break repair
via nonhomologous end joining" evidence=ISS] [GO:0008283 "cell
proliferation" evidence=ISS] [GO:0016363 "nuclear matrix"
evidence=ISS] [GO:0000731 "DNA synthesis involved in DNA repair"
evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS] [GO:0000785
"chromatin" evidence=ISS] [GO:0003896 "DNA primase activity"
evidence=ISS] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0005635 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
GO:GO:0003677 GO:GO:0008283 GO:GO:0003682 GO:GO:0006270
GO:GO:0001882 SUPFAM:SSF53098 GO:GO:0016363 GO:GO:0000084
GO:GO:0006303 GO:GO:0003887 GO:GO:0006273 GO:GO:0006269
GO:GO:0006272 Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
InterPro:IPR024647 Pfam:PF12254 TIGRFAMs:TIGR00592
HOVERGEN:HBG080008 EMBL:AB178527 Uniprot:Q59J88
Length = 1441
Score = 1650 (585.9 bits), Expect = 2.4e-238, Sum P(3) = 2.4e-238
Identities = 348/700 (49%), Positives = 456/700 (65%)
Query: 560 IRITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYXXXXXXXXXXXXXX--- 616
++ITN+ GNV+SRTLMGGR+ERNE+LLLHAF+EK++++PDKQ
Sbjct: 738 LQITNIAGNVMSRTLMGGRAERNEYLLLHAFYEKNFIVPDKQLFKKTQKQLEEDEDFEGD 797
Query: 617 ---XXXXRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPV----- 668
RKKAAYSGGLVLEPK GFYDKFI+L+DFNSLYPSIIQE+NICFTT+
Sbjct: 798 QNKSKTGRKKAAYSGGLVLEPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTVHRVSSSL 857
Query: 669 -RMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIR 727
+ +D + + E LP+ +D GILP EI+KLVE RRQVK LMKQP+L+SDL +QYDIR
Sbjct: 858 HKNTEDGEEEEIPE-LPDSSLDMGILPKEIRKLVERRRQVKQLMKQPDLNSDLYLQYDIR 916
Query: 728 QKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDS 787
QKALKLTANSMYGCLGF SRF+A+PLAALVT KGREIL++TK +VE +N EVIYGDTDS
Sbjct: 917 QKALKLTANSMYGCLGFSYSRFYAKPLAALVTFKGREILMHTKEMVEKMNLEVIYGDTDS 976
Query: 788 LMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVXXXXXXXXXXXXXXXXXXXXXN 847
+MI+ N+ + + VFK+GN+IKSE NKLYK LE+DIDG+ +
Sbjct: 977 IMINTNITNLEEVFKLGNKIKSEVNKLYKLLEIDIDGIFKSLLLLKKKKYAALVVEPTGD 1036
Query: 848 GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIR 907
GK I QE+KG+D+VRRDW LA E G ++ISQIL +Q + D ++ NI + +I
Sbjct: 1037 GKYITKQELKGLDIVRRDWCDLAKETGNYIISQILSDQ-FRDVIVE----NIQRRLIQIG 1091
Query: 908 TDLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQGDTISYIIC 967
++ NG VP+ EI K LTK P++Y D+K+LPHV VAL +N+ +KLK GDT+SY+IC
Sbjct: 1092 ENVVNGSVPIKQFEINKALTKDPQDYPDKKSLPHVHVALWINSQEGRKLKAGDTVSYVIC 1151
Query: 968 EDGTSEAATQRAYNIEELKNNSKLKIDVNYYLSQQIHPVVTRLLEPIEGTDAVRIAECLG 1027
+DG++ +A+QRAY E+LK L ID YYLSQQIHPVV R+ EPI+G D+V IA LG
Sbjct: 1152 QDGSNLSASQRAYAPEQLKKQENLAIDTQYYLSQQIHPVVARICEPIDGIDSVLIAAWLG 1211
Query: 1028 LDTSLYRSQIKESIQQSEEN--ILG--VGEAEEVKYQFCDKFEFTCMNPSCKQVNTVEAP 1083
LD S ++ + + EEN +LG V +E KY+ C++F+F C P C N +
Sbjct: 1212 LDPSQFK--VYHHYHKDEENDDLLGGPVQLTDEEKYKDCERFKFAC--PKCGTENIYDNV 1267
Query: 1084 TRLSTHGVVFVLDECINPECKVPPYTYLPHLINKLSQDMNKYIVKYYEGWLKCEDPGCSD 1143
S + L C EC P+ YL + N+L D+ YI KYY WL+CE+P C
Sbjct: 1268 VNGSDMMIEASLLYCSKKECNESPWKYLMQINNRLILDIRSYIKKYYTSWLRCEEPTCQY 1327
Query: 1144 LTRRCPLGLKTR--LCTTCHKYKLHRVYTELQLYQQLSFFHYICDITKA---LTKSDTPS 1198
TRR PL LC C K + R Y++ L+ QL F+ YI D+ A LT +
Sbjct: 1328 RTRRLPLRFSKNGPLCPVCKKAVVKREYSDKVLFTQLCFYRYIFDVDYAKQKLTNQEKDR 1387
Query: 1199 IK----FDSETYMGYCKMKQHVERFLESSAYNIVDLKKLF 1234
+K FD++T Y K+K V+++L S+Y+ V+L KLF
Sbjct: 1388 LKSQGFFDNKTMEMYKKLKNTVDQWLAMSSYSEVNLSKLF 1427
Score = 545 (196.9 bits), Expect = 2.4e-238, Sum P(3) = 2.4e-238
Identities = 156/481 (32%), Positives = 234/481 (48%)
Query: 145 IQNPNAKGDIQKLLANMPVKKKKKEEVQLNNDDVLADLLSEVNTT---IAPTLKLNTKTN 201
+ PN + +AN KK + V L+ DD+L D+L ++N IAP K
Sbjct: 75 VSKPNTIKSM--FMANTG-KKNTDKTVDLSKDDLLGDILQDLNAESVHIAPPPVPVLKKK 131
Query: 202 EIVIXXXXXXXXXXXXYLAN-FSXXXXXXXXXXXXXXXX--XSPLKDEIKSNDSVMEVEM 258
I + FS S K + S E
Sbjct: 132 RIFGTPLNPFSLQSQAATSKRFSSVVQKTVTSDKKETFTVNSSHSKHAVFPATSEAVKEK 191
Query: 259 NVAEQSKEEPVDDGLWEQMQIDDWDNSQQTQDVLPEQAKVXXXXXXXXXXXXXXKVDVTN 318
++ +++ +P ++G+ +M+ +D +D EQA + + V
Sbjct: 192 SLTPENEADPAENGVLLKMKQEDITK----ED---EQAMMDFDDGDFDVSMEEDRTVVEA 244
Query: 319 VESVSSAVELSTSPPPQVVEKK-EH----KCAE---WEAIQTEPS---TSEPQVHSRTAD 367
V SV V+L + EK H E W+ I + SE QV S
Sbjct: 245 VTSVKEEVKLEDRQ--EDFEKTGSHFLNSSLPEIFCWDKIDEDEIGHLASEIQVDS---- 298
Query: 368 DSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRK 427
LPL T + +++FR ++LDA+ED Y QPG V+LFGKV+++ S+ SCCV V+NI+R
Sbjct: 299 SQLPLITGADGQQIFRFYWLDAYEDQYNQPGVVFLFGKVWIESAKSYVSCCVTVKNIERT 358
Query: 428 IYLLPRSEHL------KTKEPVSIAQVYSEF-DQIATQYKILDFKSRKIEKKYAFNLPGV 480
IYLLPR + +T+ PV++ VY EF D +A ++KI+ +KS+K+EK YAF +P V
Sbjct: 359 IYLLPRESRIDKCSGKETENPVTMMDVYQEFNDHVAEKFKIMKYKSKKVEKNYAFEIPDV 418
Query: 481 PDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKSSFLENLLLERKIKGPSWLEFPEAEK 540
P S+YLEVRYSA+ LP DL G+TFSHVFGT +S LE LL+ RKIKGP WLE +
Sbjct: 419 PAKSDYLEVRYSAEYSRLPQDLKGETFSHVFGTNTSSLELLLMNRKIKGPGWLEIKNPQL 478
Query: 541 FPSRISWCKYEVQCNQMEKIRITN-------VCGNVLSRTLMGGRSERNEFLLLHAF-HE 592
+SWCK E+ + + + V ++ +T+ ++ +NE +++ A H
Sbjct: 479 SSQAVSWCKVELVALKPAFVNVVKDLPPPPLVIMSLSMKTVQNTKTHQNEIMVITALVHH 538
Query: 593 K 593
K
Sbjct: 539 K 539
Score = 143 (55.4 bits), Expect = 2.4e-238, Sum P(3) = 2.4e-238
Identities = 38/120 (31%), Positives = 57/120 (47%)
Query: 83 NVYEEVSEKEYTERVLKRQEXXXXXXXXXXXYVEDGREIFDDDIEDVPQXXXXXXXXXXX 142
+VY+E+ E++Y++ V +RQE YVEDGREIFD+D+ED
Sbjct: 3 SVYDEIDEEQYSKIVRERQEDDWIVDDDGVGYVEDGREIFDEDLEDDVLDSNKKRKRDSA 62
Query: 143 XNIQNPNAK-------GDIQKLLANMPVKKKKKEEVQLNNDDVLADLLSEVNTT---IAP 192
+ N K I+ + KK + V L+ DD+L D+L ++N IAP
Sbjct: 63 STKEKKNVKKTLVSKPNTIKSMFMANTGKKNTDKTVDLSKDDLLGDILQDLNAESVHIAP 122
Score = 44 (20.5 bits), Expect = 1.7e-57, Sum P(3) = 1.7e-57
Identities = 18/84 (21%), Positives = 39/84 (46%)
Query: 848 GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIR 907
G+MIC EI +++R L +++QIL + T + ++N++ +++
Sbjct: 659 GRMICDVEISAKELIRCKSYHLTE-----LVNQILKVERIT--VPPEEIRNMYSDPRQLL 711
Query: 908 TDLDNGFVPLT-LLEITKQLTKAP 930
++N + +L+I L P
Sbjct: 712 YMVENTWTDAKYILQIMCDLNVLP 735
>UNIPROTKB|F1NR19 [details] [associations]
symbol:POLA1 "DNA polymerase" species:9031 "Gallus gallus"
[GO:0001882 "nucleoside binding" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0000084 "S
phase of mitotic cell cycle" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000785 "chromatin" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0003896 "DNA primase activity"
evidence=IEA] [GO:0005635 "nuclear envelope" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006270
"DNA replication initiation" evidence=IEA] [GO:0006272 "leading
strand elongation" evidence=IEA] [GO:0006273 "lagging strand
elongation" evidence=IEA] [GO:0006303 "double-strand break repair
via nonhomologous end joining" evidence=IEA] [GO:0008283 "cell
proliferation" evidence=IEA] [GO:0016363 "nuclear matrix"
evidence=IEA] [GO:0046982 "protein heterodimerization activity"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0005737 GO:GO:0005635 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 GO:GO:0003677 GO:GO:0008283 GO:GO:0000785
GO:GO:0003682 GO:GO:0006270 GO:GO:0001882 SUPFAM:SSF53098
GO:GO:0016363 GO:GO:0000084 GO:GO:0006303 GO:GO:0003896
GO:GO:0003887 GO:GO:0006273 GO:GO:0006269 GO:GO:0006272
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658 OMA:GSGTDME
InterPro:IPR024647 Pfam:PF12254 TIGRFAMs:TIGR00592
GeneTree:ENSGT00550000074891 EMBL:AADN02011218 EMBL:AADN02011219
EMBL:AADN02011220 EMBL:AADN02011221 EMBL:AADN02011222
EMBL:AADN02011223 IPI:IPI00588123 Ensembl:ENSGALT00000026316
Uniprot:F1NR19
Length = 1462
Score = 1624 (576.7 bits), Expect = 2.7e-235, Sum P(3) = 2.7e-235
Identities = 341/701 (48%), Positives = 448/701 (63%)
Query: 560 IRITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYXXX------XXXXXXXX 613
++ITN+ GNV+SRT+MGGRSERNEFLLLHAF+EK Y++PDKQ
Sbjct: 757 LQITNISGNVMSRTMMGGRSERNEFLLLHAFYEKDYIVPDKQVFKKPLQKLVDEDEDFED 816
Query: 614 XXXXXXXRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQD 673
+KKAAY+GGLVL+PK GFYDKFI+L+DFNSLYPSIIQE+NICFTT+ R+ +
Sbjct: 817 QNKSKIGKKKAAYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTVQ-RLSSE 875
Query: 674 SDITTLCEY------LPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIR 727
+ E LP+ ++ GILP EI+KLVE RRQVK LMKQP+L+ DL +QYDIR
Sbjct: 876 AQKRAEVEEEEEIPELPDPSLEMGILPKEIRKLVERRRQVKQLMKQPDLNPDLYLQYDIR 935
Query: 728 QKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDS 787
QKALKLTANSMYGCLGF SRF+A+PLAALVT KGREIL++TK +V+ +N EVIYGDTDS
Sbjct: 936 QKALKLTANSMYGCLGFSYSRFYAKPLAALVTHKGREILMHTKEMVQKMNLEVIYGDTDS 995
Query: 788 LMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVXXXXXXXXXXXXXXXXXXXXXN 847
+MI+ N + D VFK+GN+IKSE NKLYK LE+DIDGV +
Sbjct: 996 IMINTNSTNLDEVFKLGNKIKSEVNKLYKLLEIDIDGVFKSLLLLKKKKYAALTVEPTGD 1055
Query: 848 GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIR 907
GK + QE+KG+D+VRRDW LA E G +VI QIL +Q D ++NI + +I
Sbjct: 1056 GKYVTKQELKGLDIVRRDWCDLAKETGNYVIGQILSDQPR-----DIIVENIQRRLIEIG 1110
Query: 908 TDLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQGDTISYIIC 967
++ NG +P+ EI K LTK P++Y D+K+LPHV VA+ +N+ +K+K GDT+SYIIC
Sbjct: 1111 ENVINGQIPVNQFEINKALTKDPQDYPDKKSLPHVHVAMWINSQGGRKVKAGDTVSYIIC 1170
Query: 968 EDGTSEAATQRAYNIEELKNNSKLKIDVNYYLSQQIHPVVTRLLEPIEGTDAVRIAECLG 1027
+DG++ +A+QRAY E+L+ L ID YYLSQQIHPVV R+ EPIEG D+V IA LG
Sbjct: 1171 QDGSNLSASQRAYAPEQLQKQDNLTIDTQYYLSQQIHPVVARICEPIEGIDSVLIATWLG 1230
Query: 1028 LDTSLYRSQIKESIQQSEENILGVGE----AEEVKYQFCDKFEFTCMNPSCKQVNTVEAP 1083
LD S +R + + EEN VG +E KY+ C++F+F C+ C N +
Sbjct: 1231 LDPSQFR--VHHHYHKDEENDALVGGPAQLTDEEKYRDCERFKFCCLK--CGTENIYDNV 1286
Query: 1084 TRLSTHGVVFVLDECINPECKVPPYTYLPHLINKLSQDMNKYIVKYYEGWLKCEDPGCSD 1143
S + L C EC+ PP+ ++ + NKL D+ +Y+ KYY GWL CEDP C +
Sbjct: 1287 FDCSGRFIEPSLQRCSKSECEEPPFNHVVQMNNKLLLDIRRYLKKYYNGWLICEDPTCQN 1346
Query: 1144 LTRRCPLGLKTR--LCTTCHKYKLHRVYTELQLYQQLSFFHYICDIT----KALTKSDTP 1197
TRR PL +C C K L Y++ LY QL F+ YI D+ K +T+ D
Sbjct: 1347 RTRRLPLSFSRSGPICQACRKAILRPEYSDKALYTQLCFYRYIFDVEYATDKVITEEDRE 1406
Query: 1198 SIK---FDSETYMGYCKMKQHVERFLESSAYNIVDLKKLFS 1235
++ E Y K+K V++ L S+Y+ V+L KLFS
Sbjct: 1407 FVRRKPLRKEVSEAYRKLKSTVDKCLSLSSYSEVNLGKLFS 1447
Score = 526 (190.2 bits), Expect = 2.7e-235, Sum P(3) = 2.7e-235
Identities = 126/351 (35%), Positives = 186/351 (52%)
Query: 260 VAEQSKEEPVDDGLWEQMQIDDWDNSQQTQDVLPEQAKVXXXXXXXXXXXXXXKVDVTNV 319
V + +E+ ++D M DD D + + L V K ++ +
Sbjct: 220 VVKTKEEKAIEDDDQGMMDFDDEDFDEPMEAEL--MGAVPETAETLKRDKEVEKKEMEQL 277
Query: 320 ESVSS-AVELSTSPPPQVVEKKEHKCAEWEAIQTEPSTSEPQVHSRTADDSLPLATDHEN 378
ES A LS S P + C W+ ++ E + + LPL +
Sbjct: 278 ESKKKEASALSHSLP-------DISC--WDKVE-EDEADLVATDVQLDPNLLPLVNGEND 327
Query: 379 KKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHL- 437
+V R ++LDA+ED Y QPG V+LFGKV+++ N++ SCCV V+NI+R +YLLPR +
Sbjct: 328 DQVLRFYWLDAYEDQYSQPGVVFLFGKVWIESANTYVSCCVTVKNIERTVYLLPRETEMD 387
Query: 438 -----KTKEPVSIAQVYSEF-DQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRY 491
+T+ PV+I V+ EF D I+ +YKI+ FKS+K+EK YAF +P VP SEYLEV+Y
Sbjct: 388 LSSGKETETPVTIMNVFKEFNDCISPKYKIMKFKSKKVEKYYAFEIPDVPAKSEYLEVKY 447
Query: 492 SAKCPALPSDLSGDTFSHVFGTKSSFLENLLLERKIKGPSWLEFPEAEKFPSRISWCKYE 551
SA+ P LP DL G+TFSH FGT +S LE LL+ RKIKGP WLE + +SWCK E
Sbjct: 448 SAEYPRLPQDLKGETFSHAFGTNTSSLELLLMSRKIKGPCWLEIKNPQPSNQSVSWCKVE 507
Query: 552 VQCNQMEKIRITN--------VCGNVLSRTLMGGRSERNEFLLLHAF-HEK 593
+ + + V + +T+ ++ +NE + + A H+K
Sbjct: 508 AVAMKPGLVNVVKDLPPPPPLVVMSFSMKTIQNPKTHQNEIVAMAALIHQK 558
Score = 159 (61.0 bits), Expect = 2.7e-235, Sum P(3) = 2.7e-235
Identities = 42/134 (31%), Positives = 66/134 (49%)
Query: 71 GVKHKYEFTADENVYEEVSEKEYTERVLKRQEXXXXXXXXXXXYVEDGREIFDDDIEDVP 130
G K KYE VY+E+ E++Y++ V +RQ+ YVEDGREIFD+D++D
Sbjct: 6 GEKLKYEVEEFTGVYDEIDEEQYSKIVRERQDDDWIVDDDGIGYVEDGREIFDEDLDDDA 65
Query: 131 QXXXXXXXXXXXXNIQNPNAKGDI---QKLLANMPV----KKKKKEEVQLNNDDVLADLL 183
I N K + + +M + KK + V L+ DD+L D+L
Sbjct: 66 LGSSKKGKTGKTSTIGKKNVKKSVVAKPNTIKSMFIASAGKKNTDKTVDLSKDDLLGDIL 125
Query: 184 SEVNTTIAPTLKLN 197
++N A T++L+
Sbjct: 126 QDLN---AETVQLS 136
Score = 54 (24.1 bits), Expect = 4.6e-58, Sum P(3) = 4.6e-58
Identities = 22/84 (26%), Positives = 40/84 (47%)
Query: 848 GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIR 907
G+MIC EI +++R L SE ++ QIL + T L + ++N++ +
Sbjct: 678 GRMICDVEISAKELIRCKSYHL-SE----LVHQILKTERVT--ILPEEIRNLYSDSPHLL 730
Query: 908 TDLDNGFVPLT-LLEITKQLTKAP 930
L+N + +L+I +L P
Sbjct: 731 FMLENTWTDAKFILQIMCELNVLP 754
Score = 37 (18.1 bits), Expect = 2.1e-222, Sum P(3) = 2.1e-222
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 146 QNPNAKGDIQKLLANMPVKKKKKEEVQLNNDDVLADLLSE 185
+N + K +QK N V K K+E+ ++D + D E
Sbjct: 204 ENEDTKY-VQKATENGRVVKTKEEKAIEDDDQGMMDFDDE 242
>UNIPROTKB|Q59J89 [details] [associations]
symbol:Q59J89 "DNA polymerase" species:34903 "Trachemys
scripta" [GO:0000084 "S phase of mitotic cell cycle" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=ISS] [GO:0003677 "DNA
binding" evidence=ISS] [GO:0003682 "chromatin binding"
evidence=ISS] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005635
"nuclear envelope" evidence=ISS] [GO:0005654 "nucleoplasm"
evidence=ISS] [GO:0005658 "alpha DNA polymerase:primase complex"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0006269 "DNA replication,
synthesis of RNA primer" evidence=ISS] [GO:0006270 "DNA replication
initiation" evidence=ISS] [GO:0006271 "DNA strand elongation
involved in DNA replication" evidence=ISS] [GO:0006272 "leading
strand elongation" evidence=ISS] [GO:0006273 "lagging strand
elongation" evidence=ISS] [GO:0006303 "double-strand break repair
via nonhomologous end joining" evidence=ISS] [GO:0008283 "cell
proliferation" evidence=ISS] [GO:0016363 "nuclear matrix"
evidence=ISS] [GO:0000731 "DNA synthesis involved in DNA repair"
evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS] [GO:0000785
"chromatin" evidence=ISS] [GO:0003896 "DNA primase activity"
evidence=ISS] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0005635 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
GO:GO:0003677 GO:GO:0008283 GO:GO:0003682 GO:GO:0006270
GO:GO:0001882 SUPFAM:SSF53098 GO:GO:0016363 GO:GO:0000084
GO:GO:0006303 GO:GO:0003887 GO:GO:0006273 GO:GO:0006269
GO:GO:0006272 Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
InterPro:IPR024647 Pfam:PF12254 TIGRFAMs:TIGR00592
HOVERGEN:HBG080008 EMBL:AB178526 Uniprot:Q59J89
Length = 1441
Score = 1605 (570.0 bits), Expect = 1.6e-230, Sum P(2) = 1.6e-230
Identities = 339/700 (48%), Positives = 449/700 (64%)
Query: 560 IRITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYXXX------XXXXXXXX 613
++ITN+ GNV+SRT+MGGRSERNEFLLLHAF+E+ Y++PDKQ
Sbjct: 736 LQITNISGNVMSRTMMGGRSERNEFLLLHAFYERDYIVPDKQVFKKPQQKLVDEDEGVED 795
Query: 614 XXXXXXXRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP-----V 668
RKKAAY+GGLVL+PK GFYD FI+L+DFNSLYPSIIQE+NICFTT+
Sbjct: 796 QNKSKIGRKKAAYAGGLVLDPKVGFYDTFILLLDFNSLYPSIIQEFNICFTTVQRESSDA 855
Query: 669 RMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQ 728
+ + + LP+ ++ GILP EI+KLVE RRQVK LMKQP+L+ DL +QYDIRQ
Sbjct: 856 QKRAEDGVQEEIPELPDPSLEMGILPKEIRKLVERRRQVKQLMKQPDLNPDLYLQYDIRQ 915
Query: 729 KALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSL 788
KALKLTANSMYGCLGF SRF+A+PLAALVT KGREIL++TK +V+ +N EVIYGDTDS+
Sbjct: 916 KALKLTANSMYGCLGFSYSRFYAKPLAALVTHKGREILMHTKEMVQKMNLEVIYGDTDSI 975
Query: 789 MISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVXXXXXXXXXXXXXXXXXXXXXNG 848
MI+ N + + VFK+GN+IKSE NKLYK LE+DIDGV +G
Sbjct: 976 MINTNSTNLEEVFKLGNKIKSEVNKLYKLLEIDIDGVFKSLLLLKKKKYAALTVEPTGDG 1035
Query: 849 KMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRT 908
K + QE+KG+D+VRRDW LA E G +VI QIL +QS D ++NI + +I
Sbjct: 1036 KYVTKQELKGLDIVRRDWCDLAKETGNYVIGQILSDQSR-----DTIVENIQRRLIEIGE 1090
Query: 909 DLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQGDTISYIICE 968
++ NG VP++ EI K LTK P++Y D+K+LPHV VA+ +N+ +K+K GDT+SY+IC+
Sbjct: 1091 NVINGRVPISQFEINKALTKDPQDYPDKKSLPHVHVAMWINSQEGRKVKAGDTVSYVICQ 1150
Query: 969 DGTSEAATQRAYNIEELKNNSKLKIDVNYYLSQQIHPVVTRLLEPIEGTDAVRIAECLGL 1028
DG++ +A+QRAY E+L+ L +D YYLSQQIHPVV R+ EPI+G D+V IA LGL
Sbjct: 1151 DGSNLSASQRAYAPEQLQKQENLTVDTQYYLSQQIHPVVARICEPIDGIDSVLIATWLGL 1210
Query: 1029 DTSLYRSQIKESIQQSEEN--ILGVGEAE---EVKYQFCDKFEFTCMNPSCKQVNTVEAP 1083
D S ++ I + EEN +LG G A+ E KY+ C++F+F+C P C N +
Sbjct: 1211 DPSQFK--IHHHYHKDEENDALLG-GPAQLTDEEKYRDCERFKFSC--PRCGTENIYDNV 1265
Query: 1084 TRLSTHGVVFVLDECINPECKVPPYTYLPHLINKLSQDMNKYIVKYYEGWLKCEDPGCSD 1143
S + L +C EC P+ Y + NKL D+ +Y+ YY WL CE+P C +
Sbjct: 1266 FDGSGKLMEPSLQQCSKKECDESPFNYTIQMNNKLLLDIRRYLKSYYNSWLICEEPTCQN 1325
Query: 1144 LTRRCPLGLKTR--LCTTCHKYKLHRVYTELQLYQQLSFFHYICDIT----KALTKSDTP 1197
TRR PL LC C K L Y++ LY QL F+ YI D+ K +T +
Sbjct: 1326 RTRRLPLSFSQNGALCQACKKAILRPEYSDKALYTQLCFYRYIFDVDYAMDKVITDQEKE 1385
Query: 1198 SIKFD---SETYMGYCKMKQHVERFLESSAYNIVDLKKLF 1234
S+K +ET + Y K+K V++FL S Y+ V+L KLF
Sbjct: 1386 SMKRKLTINETEV-YRKLKNTVDKFLSMSGYSEVNLSKLF 1424
Score = 642 (231.1 bits), Expect = 1.6e-230, Sum P(2) = 1.6e-230
Identities = 180/558 (32%), Positives = 263/558 (47%)
Query: 83 NVYEEVSEKEYTERVLKRQEXXXXXXXXXXXYVEDGREIFDDDIEDVPQXXXXXXXXXXX 142
+VYEEV E +Y++ V +RQ+ YVEDGREIFD+D+ED
Sbjct: 3 SVYEEVDEAQYSKMVRERQDDDWIVDDDGIGYVEDGREIFDEDLEDDVLGSKKKGKGDKT 62
Query: 143 XNIQNPNAK-------GDIQKLLANMPVKKKKKEEVQLNNDDVLADLLSEVNT-TIA--- 191
N K I+ + KK + V L+ DD+L D+L ++N TI
Sbjct: 63 STNDKKNVKKSVVSKPNTIKSMFMASAGKKNTDKTVDLSKDDLLGDILQDLNAETIQITP 122
Query: 192 -PTLKLNTKT------NEIVIXXXXXXXXXXXXYLANFSXXXXXXXXXXXXXXXXXSPLK 244
P +KL K N + A + K
Sbjct: 123 PPVVKLRKKRPVGASLNPFSVQSPAHMVVTPIVRKAPTTVKKEVISPTTADPKHTTYAAK 182
Query: 245 DEIKSNDSVMEVEMNVAEQSK------EEPVDDGLWEQMQIDDWDNSQQTQDVLPEQAKV 298
++ E + AE + E+ + + M +D D + + +PE A
Sbjct: 183 PVAVHKENGAEYTIKTAENEELVKAKPEKAIQENDQGMMDFEDGDFDEPMEADIPETA-- 240
Query: 299 XXXXXXXXXXXXXXKVDVTNVESVSSAVELSTSPPPQVVEKKEHKC-AEWEAIQTEPSTS 357
K + V+SV +S P + C + +T+ S
Sbjct: 241 ----GALKKEQKLEKKETQQVDSVKEDASFLSSFLPDM------SCWTRMDKDETDLVAS 290
Query: 358 EPQVHSRTADDS-LPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSS 416
E QV D S LPL + +VFR ++LDA+ED Y QPG V+LFGKV+++ ++ S
Sbjct: 291 EVQV-----DPSCLPLVNGEDGDQVFRFYWLDAYEDQYSQPGVVFLFGKVWIESAETYVS 345
Query: 417 CCVIVQNIDRKIYLLPRSEHL------KTKEPVSIAQVYSEF-DQIATQYKILDFKSRKI 469
CCV V+NI+R IYLLPR + +T+ PV++ +Y EF DQIA +YKI+ F+S+K+
Sbjct: 346 CCVTVKNIERIIYLLPREMQMDLTSGKETENPVTMMNIYQEFNDQIAVKYKIMKFRSKKV 405
Query: 470 EKKYAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKSSFLENLLLERKIKG 529
EK YAF +P VP S+YLEVRYSA+ P LP DL G+TFSHVFGT +S LE LL+ RKIKG
Sbjct: 406 EKNYAFEIPDVPAKSDYLEVRYSAEFPRLPQDLKGETFSHVFGTNTSSLELLLMSRKIKG 465
Query: 530 PSWLEFPEAEKFPSRISWCKYEVQCNQMEKIRITN-------VCGNVLSRTLMGGRSERN 582
PSWLE + +SWCK E + + + I V ++ RT+ ++ ++
Sbjct: 466 PSWLEIKNPQPLSHPVSWCKVEATALKPDLVNIVKDLPPPPLVIMSLSMRTIQNVKTHQH 525
Query: 583 EFLLLHAFHEKSYVLPDK 600
E + + A + + L DK
Sbjct: 526 EVMAVAALVHQRFCL-DK 542
Score = 47 (21.6 bits), Expect = 1.3e-58, Sum P(2) = 1.3e-58
Identities = 21/84 (25%), Positives = 39/84 (46%)
Query: 848 GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIR 907
G+MIC EI +++R L SE ++ QIL + T + ++N++ +
Sbjct: 657 GRMICDVEISAKELIRCKSYHL-SE----LVHQILKTERIT--IPPEEIRNMYSDSSHLL 709
Query: 908 TDLDNGFVPLT-LLEITKQLTKAP 930
L+N + +L+I +L P
Sbjct: 710 YMLENTWTDARFILQIMCELNVLP 733
>UNIPROTKB|Q59J90 [details] [associations]
symbol:Q59J90 "DNA polymerase" species:8296 "Ambystoma
mexicanum" [GO:0000084 "S phase of mitotic cell cycle"
evidence=ISS] [GO:0000166 "nucleotide binding" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0003682 "chromatin
binding" evidence=ISS] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005635 "nuclear envelope" evidence=ISS] [GO:0005654
"nucleoplasm" evidence=ISS] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0006269 "DNA replication, synthesis of RNA primer"
evidence=ISS] [GO:0006270 "DNA replication initiation"
evidence=ISS] [GO:0006271 "DNA strand elongation involved in DNA
replication" evidence=ISS] [GO:0006272 "leading strand elongation"
evidence=ISS] [GO:0006273 "lagging strand elongation" evidence=ISS]
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=ISS] [GO:0008283 "cell proliferation"
evidence=ISS] [GO:0016363 "nuclear matrix" evidence=ISS]
[GO:0000731 "DNA synthesis involved in DNA repair" evidence=ISS]
[GO:0006281 "DNA repair" evidence=ISS] [GO:0000785 "chromatin"
evidence=ISS] [GO:0003896 "DNA primase activity" evidence=ISS]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR015088
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 Pfam:PF08996
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0005635
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 GO:GO:0003677
GO:GO:0008283 GO:GO:0003682 GO:GO:0006270 GO:GO:0001882
SUPFAM:SSF53098 GO:GO:0016363 GO:GO:0000084 GO:GO:0006303
GO:GO:0003887 GO:GO:0006273 GO:GO:0006269 GO:GO:0006272
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
TIGRFAMs:TIGR00592 HOVERGEN:HBG080008 EMBL:AB178525 Uniprot:Q59J90
Length = 1409
Score = 1604 (569.7 bits), Expect = 2.5e-230, Sum P(3) = 2.5e-230
Identities = 337/701 (48%), Positives = 451/701 (64%)
Query: 560 IRITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDK-------QYXXXXXXXXXX 612
++ITN+ GNV+SRTLMGGRSERNE+LLLHAF+E ++++PDK Q
Sbjct: 713 LQITNIAGNVMSRTLMGGRSERNEYLLLHAFYENNFIVPDKPTFKKPLQNLVDEDEDIEN 772
Query: 613 XXXXXXXXRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP----- 667
RKKAAY+GGLVL+PK GFYDKFI+L+DFNSLYPSIIQE+NICFTT+
Sbjct: 773 DQGKQKKVRKKAAYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTVQRLDSN 832
Query: 668 VRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIR 727
+ + + + LP+ ++ GILP EI+KLVE RRQVK LMKQ +L+ DL MQYDIR
Sbjct: 833 AQKMPEGEEQDDIPQLPDPDLELGILPREIRKLVERRRQVKQLMKQSDLNPDLYMQYDIR 892
Query: 728 QKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDS 787
QKALKLTANSMYGCLGF SRF+A+PLAALVT KGREILL+T+ +V+ +N EVIYGDTDS
Sbjct: 893 QKALKLTANSMYGCLGFSFSRFYAKPLAALVTHKGREILLHTRDMVQKMNLEVIYGDTDS 952
Query: 788 LMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVXXXXXXXXXXXXXXXXXXXXXN 847
+MI+ N + + VFK+GN++KSE NKLYKQLE+DIDGV +
Sbjct: 953 IMINTNSTNLEEVFKLGNKVKSEVNKLYKQLEIDIDGVFKSLLLLKKKKYAALTMEPAGD 1012
Query: 848 GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIR 907
GK + QE+KG+D+VRRDW LA E G ++I+QIL +Q D ++NI + + +I
Sbjct: 1013 GKYVTKQELKGLDIVRRDWCDLAKETGNYIITQILSDQPR-----DTIVENIQKQLIEIG 1067
Query: 908 TDLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQGDTISYIIC 967
++ NG +P+ EI K LTK P++Y D+K+LPHV VAL +N+ +K+K GDT+SYIIC
Sbjct: 1068 ENVVNGSIPINQYEINKALTKDPQDYPDKKSLPHVHVALWINSQGGRKMKAGDTVSYIIC 1127
Query: 968 EDGTSEAATQRAYNIEELKNNSKLKIDVNYYLSQQIHPVVTRLLEPIEGTDAVRIAECLG 1027
+DG++ +A+QRAY +E+L+ L ID YYLSQQ+HPVV R+ EPI+G D+ IA LG
Sbjct: 1128 QDGSNLSASQRAYALEQLQKQDNLAIDTQYYLSQQVHPVVARICEPIDGIDSALIAAWLG 1187
Query: 1028 LDTSLYRSQIKESIQQSEEN--ILGVGE--AEEVKYQFCDKFEFTCMNPSCKQVNTVEAP 1083
LD S +R ++ Q+ EEN +LG +E KY+ C++F+FTC P+C +
Sbjct: 1188 LDPSQFR--VQSHYQKDEENDAMLGGPSQITDEEKYKDCERFKFTC--PACGTEGIYD-- 1241
Query: 1084 TRLSTHGVVF--VLDECINPECKVPPYTYLPHLINKLSQDMNKYIVKYYEGWLKCEDPGC 1141
G + +L C PEC P ++ L NKL D+ ++I KYY W CE+P C
Sbjct: 1242 NAFDGSGALMEPILKRCCKPECDASPMHFVIQLQNKLHLDIRRHIKKYYSAWFICEEPTC 1301
Query: 1142 SDLTRRCPLGLKTR--LCTTCHKYKLHRVYTELQLYQQLSFFHYICDI--TKALTKSDTP 1197
+ TRR PL +C C K L Y + LY QL F+ YI D+ TK + SD
Sbjct: 1302 QNRTRRLPLNFSRNGPICQACMKATLRPEYPDKALYTQLCFYRYIFDLEYTKEKSVSDVE 1361
Query: 1198 S-IKFDSE---TYMGYCKMKQHVERFLESSAYNIVDLKKLF 1234
+ D+E T + Y ++K V+R L SS Y+ V+L KLF
Sbjct: 1362 KRLLKDAELDGTDVVYKRLKGTVDRCLSSSGYSEVNLAKLF 1402
Score = 545 (196.9 bits), Expect = 2.5e-230, Sum P(3) = 2.5e-230
Identities = 119/275 (43%), Positives = 164/275 (59%)
Query: 335 QVVEKKEHKCAEWEAIQTEPSTSEPQVHSRTADDS-LPLATDHENKKVFRMFFLDAFEDI 393
Q ++ E C W +T+ SE V D S LPL + +VFR ++LDA+ED
Sbjct: 244 QTIQLPEVSC--WG--KTDQEDSEVVVTDVQVDSSSLPLVIGTDGDQVFRFYWLDAYEDQ 299
Query: 394 YKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHL------KTKEPVSIAQ 447
Y QPG VYLFGKV+++ +H SCC+ V+NI+R +YLLPR + +T PVS+
Sbjct: 300 YNQPGVVYLFGKVWIESAEAHVSCCLTVKNIERTVYLLPRETQVDLSSGKETGTPVSMMN 359
Query: 448 VYSEFDQ-IATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDT 506
VY EF++ IA ++K++ FKS+KIEK YAF +P VP SEYLEVRYSA+ P LP DL G+T
Sbjct: 360 VYQEFNERIAEKFKLMKFKSKKIEKNYAFEIPDVPANSEYLEVRYSAELPPLPKDLKGET 419
Query: 507 FSHVFGTKSSFLENLLLERKIKGPSWLEFPEAEKFPSRISWCKYEVQCNQMEKIRITN-- 564
FSHVFGT +S LE LL RKIKGPSWLE + +SWCK E + + + +
Sbjct: 420 FSHVFGTNTSSLELFLLSRKIKGPSWLEIKTPQLSFQPVSWCKVEAVALKPDLVSVVKDL 479
Query: 565 -----VCGNVLSRTLMGGRSERNEFLLLHAF-HEK 593
V + +T+ ++ +NE + + H K
Sbjct: 480 PPPPLVVMALSMKTVQNAKTHQNEIVAISVLAHHK 514
Score = 113 (44.8 bits), Expect = 2.5e-230, Sum P(3) = 2.5e-230
Identities = 30/90 (33%), Positives = 44/90 (48%)
Query: 114 YVEDGREIFDDDIED-VPQXXXXXXXXXXXX----NIQNP--NAKGDIQKLLANMPVKKK 166
YVEDGREIFDDD++D V N++ P + I+ + KK
Sbjct: 9 YVEDGREIFDDDLQDDVASNSSAAKGKKGNAQEKGNLKKPVVSKPNSIKTMFMASAGKKT 68
Query: 167 KKEEVQLNNDDVLADLLSEVNTTIAPTLKL 196
+ V L+ DD+L D+L ++N AP + L
Sbjct: 69 ADKTVDLSKDDLLGDILQDINAA-APIISL 97
Score = 41 (19.5 bits), Expect = 4.3e-54, Sum P(3) = 4.3e-54
Identities = 18/78 (23%), Positives = 37/78 (47%)
Query: 848 GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQ--ILDEQSYTDYSLDD-RLQNIHEHMK 904
G+MIC +I +++R L+ + + ++ I+ ++ +Y D +L + EH
Sbjct: 634 GRMICDVQISAKELIRCKSYHLSELVHQILKTERLIIPGENIRNYYSDSPQLLYMLEH-- 691
Query: 905 KIRTDLDNGFVPLTLLEI 922
T LD F+ + E+
Sbjct: 692 ---TWLDTKFILQIMCEL 706
>UNIPROTKB|E2QVU2 [details] [associations]
symbol:POLA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0001882 "nucleoside
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 GO:GO:0001882
SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR024647 Pfam:PF12254
TIGRFAMs:TIGR00592 Ensembl:ENSCAFT00000021463 Uniprot:E2QVU2
Length = 1357
Score = 1413 (502.5 bits), Expect = 6.3e-219, Sum P(3) = 6.3e-219
Identities = 301/594 (50%), Positives = 394/594 (66%)
Query: 560 IRITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYXXX-------XXXXXXX 612
++ITN+ GN++SRTLMGGRSERNEFLLLHAF+E +Y++PDKQ
Sbjct: 772 LQITNIAGNIMSRTLMGGRSERNEFLLLHAFYENNYIVPDKQIFRKPQQKLGDEDEELDG 831
Query: 613 XXXXXXXXRKKAAYSGGLVLEPKK-GFYDKFIILMDFNSLYPSIIQEYNICFTTIP---- 667
RKKAAY+GGLVL+PK GFYDKFI+L+DFNSLYPSIIQE+NICFTT+
Sbjct: 832 DANKYKKGRKKAAYAGGLVLDPKAAGFYDKFILLLDFNSLYPSIIQEFNICFTTVQRVAS 891
Query: 668 --VRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYD 725
++ +D + + E LP+ ++ GILP EI+KLVE R+QVK LMKQ +L+ DL++QYD
Sbjct: 892 ETQKVTEDGEQEQIPE-LPDPGLEMGILPREIRKLVERRKQVKQLMKQQDLNPDLVLQYD 950
Query: 726 IRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDT 785
IRQKALKLTANSMYGCLGF SRF+A+PLAALVT KGREIL++TK +V+ +N EVIYGDT
Sbjct: 951 IRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREILMHTKEMVQKMNLEVIYGDT 1010
Query: 786 DSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVXXXXXXXXXXXXXXXXXXXX 845
DS+MI+ N D + V+K+GN++KSE NKLYK LE+DIDGV
Sbjct: 1011 DSIMINTNSTDLEEVYKLGNKVKSEVNKLYKLLEIDIDGVFKSLLLLKKKKYGALVVEPT 1070
Query: 846 XNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKK 905
+G QE+KG+D+VRRDW LA E G FVI QIL +QS D ++NI + + +
Sbjct: 1071 SDGNYSTKQELKGLDIVRRDWCDLAKETGNFVIGQILSDQSR-----DTIVENIQKRLIE 1125
Query: 906 IRTDLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQGDTISYI 965
I ++ NG VP++ EI K LTK P++Y D+K+LPHV VAL +N+ +K+K GDT+SY+
Sbjct: 1126 IGENVLNGSVPVSQFEINKALTKDPQDYPDKKSLPHVHVALWMNSQGGRKMKAGDTVSYV 1185
Query: 966 ICEDGTSEAATQRAYNIEELKNNSKLKIDVNYYLSQQIHPVVTRLLEPIEGTDAVRIAEC 1025
IC+DG++ A+QRAY E+L+ L ID YYL+QQIHPVV R+ EPI+G DAV IA
Sbjct: 1186 ICQDGSNLTASQRAYAPEQLQKQDNLTIDTQYYLAQQIHPVVARICEPIDGIDAVLIATW 1245
Query: 1026 LGLDTSLYRSQIK-ESIQQSEEN--ILGVGEAE---EVKYQFCDKFEFTCMNPSCKQVNT 1079
L L T L +Q + + EEN +LG G A+ E KY+ C++F+ C P+C N
Sbjct: 1246 LAL-TGLDPTQFRVHHYHKDEENDALLG-GPAQLTDEEKYRDCERFKCPC--PTCGTENI 1301
Query: 1080 VEAPTRLSTHGVVFVLDECINPECKVPPYTYLPHLINKLSQDMNKYIVKYYEGW 1133
++ S V L C N +CK P T + L NKL D+ + I KYYE W
Sbjct: 1302 YDSVLDGSGTDVEPSLYRCSNIDCKASPLTSVVQLSNKLIMDIRRCIKKYYEVW 1355
Score = 541 (195.5 bits), Expect = 6.3e-219, Sum P(3) = 6.3e-219
Identities = 112/268 (41%), Positives = 163/268 (60%)
Query: 347 WEAIQTEPSTSEPQVHSRTADDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKV 406
W+ Q + S+ Q + LPL + ++VF ++LDA+ED Y QPG V+LFGKV
Sbjct: 313 WDIDQEDDSSFSAQ-EVQVDSSHLPLVKGTDEEQVFHFYWLDAYEDQYSQPGVVFLFGKV 371
Query: 407 FVKENNSHSSCCVIVQNIDRKIYLLPRSEHL------KTKEPVSIAQVYSEFDQ-IATQY 459
+++ +H SCCV+V+NI+R +Y LPR + +T+ V++ VY EFD+ IA +Y
Sbjct: 372 WIESAKTHVSCCVMVKNIERTLYFLPREMKIDLNTGKETETLVTMKDVYDEFDEKIAAKY 431
Query: 460 KILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKSSFLE 519
KI+ FKS+ +EK YAF +P VP+ SEYLEVRYSA+ P LP DL G+TFSHVFGT +S LE
Sbjct: 432 KIMKFKSKPVEKNYAFEIPDVPEKSEYLEVRYSAEMPQLPQDLKGETFSHVFGTNTSSLE 491
Query: 520 NLLLERKIKGPSWLEFPEAEKFPSRISWCKYEVQCNQMEKIRITNVCGN----VLS---R 572
L+ RKIKGP WLE + +SWCK E + + + + G V+S +
Sbjct: 492 MFLMNRKIKGPCWLEVKNPQLLNQPVSWCKVEAMALKPDLVNVIKDIGPPPLVVMSFSMK 551
Query: 573 TLMGGRSERNEFLLLHAFHEKSYVLPDK 600
T+ ++ ++E + + A S+ L DK
Sbjct: 552 TMQNAKTHQHEIIAVAALVHHSFAL-DK 578
Score = 200 (75.5 bits), Expect = 6.3e-219, Sum P(3) = 6.3e-219
Identities = 52/154 (33%), Positives = 75/154 (48%)
Query: 46 RAKRQKIDKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEXXX 105
R++R+K K + A ++LK K G K+KYE +VYEEV E++Y++ V RQ+
Sbjct: 26 RSRREKKSKRGRQEALERLKRAKA-GEKYKYEVEDFTSVYEEVDEEQYSKLVQARQDDDW 84
Query: 106 XXXXXXXXYVEDGREIFDDDIEDVPQXXXXXXXXXXXXNIQNPNAK-------GDIQKLL 158
YVEDGREIFDDD+ED N K +I+ +
Sbjct: 85 IVDDDGIGYVEDGREIFDDDLEDDALDSHEKGKDDKARTKDRRNVKKAAVTKPNNIKSMF 144
Query: 159 ANMPVKKKKKEEVQLNNDDVLADLLSEVNTTIAP 192
KK + V L+ DD+L D+L ++NT P
Sbjct: 145 IASAGKKTTDKAVDLSKDDLLGDILQDLNTEKPP 178
Score = 45 (20.9 bits), Expect = 2.8e-63, Sum P(3) = 2.8e-63
Identities = 21/83 (25%), Positives = 35/83 (42%)
Query: 848 GKMICSQEIKGVDVVR-RDW--SQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMK 904
G+MIC EI +++R + + S+L + + I E YS L + EH
Sbjct: 693 GRMICDVEISAKELIRCKSYHLSELVQQILRTERVVIPMENVRNMYSESSHLLYLLEHTW 752
Query: 905 KIRTDLDNGFVPLTLLEITKQLT 927
K + L +L + Q+T
Sbjct: 753 KDARFILQIMCELNVLPLALQIT 775
>FB|FBgn0259113 [details] [associations]
symbol:DNApol-alpha180 "DNA polymerase alpha 180kD"
species:7227 "Drosophila melanogaster" [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=ISS;NAS;IDA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS;NAS;IDA]
[GO:0006260 "DNA replication" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006271 "DNA strand elongation involved in DNA
replication" evidence=NAS] [GO:0008296 "3'-5'-exodeoxyribonuclease
activity" evidence=NAS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0001882 "nucleoside binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
EMBL:AE014297 GO:GO:0022008 GO:GO:0000166 GO:GO:0046872
GO:GO:0003677 GO:GO:0006260 GO:GO:0006281 GO:GO:0051539
GO:GO:0001882 GO:GO:0004527 GO:GO:0090305 SUPFAM:SSF53098
GO:GO:0003887 KO:K02320 eggNOG:COG0417 Gene3D:3.90.1600.10
InterPro:IPR023211 GO:GO:0005658 OMA:GSGTDME InterPro:IPR024647
Pfam:PF12254 TIGRFAMs:TIGR00592 GeneTree:ENSGT00550000074891
EMBL:D90310 EMBL:S48157 EMBL:AB011813 EMBL:AY070529 PIR:S28079
RefSeq:NP_536736.2 UniGene:Dm.1592 ProteinModelPortal:P26019
SMR:P26019 DIP:DIP-23937N IntAct:P26019 MINT:MINT-206832
STRING:P26019 PaxDb:P26019 EnsemblMetazoa:FBtr0084115 GeneID:42553
KEGG:dme:Dmel_CG6349 CTD:42553 FlyBase:FBgn0259113
OrthoDB:EOG4MPG50 PhylomeDB:P26019 ChEMBL:CHEMBL6039
GenomeRNAi:42553 NextBio:829396 Bgee:P26019 GermOnline:CG6349
Uniprot:P26019
Length = 1488
Score = 1611 (572.2 bits), Expect = 2.7e-218, Sum P(3) = 2.7e-218
Identities = 333/708 (47%), Positives = 456/708 (64%)
Query: 560 IRITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQ-----YXXXXXXXXXXXX 614
++ITN+CGN ++RTL GGRSERNEFLLLHAFHEK+Y++PDK+
Sbjct: 788 LQITNICGNTMTRTLQGGRSERNEFLLLHAFHEKNYIVPDKKPVSKRSGAGDTDATLSGA 847
Query: 615 XXXXXXRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDS 674
+KKAAY+GGLVLEP +G Y+K+++LMDFNSLYPSIIQEYNICFTT+ + D
Sbjct: 848 DATMQTKKKAAYAGGLVLEPMRGLYEKYVLLMDFNSLYPSIIQEYNICFTTVQQPVDAD- 906
Query: 675 DITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLT 734
++ TL P+ + + GILP ++K+LVESR++VK LM P+LS +L MQY IRQ ALKLT
Sbjct: 907 ELPTL----PDSKTEPGILPLQLKRLVESRKEVKKLMAAPDLSPELQMQYHIRQMALKLT 962
Query: 735 ANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNV 794
ANSMYGCLGF +SRFFAQ LAALVT KGREIL NT+ LV+ +NY+V+YGDTDSLMI+ N+
Sbjct: 963 ANSMYGCLGFAHSRFFAQHLAALVTHKGREILTNTQQLVQKMNYDVVYGDTDSLMINTNI 1022
Query: 795 NDYDSVFKIGNQIKSECNKLYKQLELDIDGVXXXXXXXXXXXXXXXXXXXXXNGKMICSQ 854
DYD V+KIG+ IK NKLYKQLELDIDGV G + Q
Sbjct: 1023 TDYDQVYKIGHNIKQSVNKLYKQLELDIDGVFGCLLLLKKKKYAAIKLSKDSKGNLRREQ 1082
Query: 855 EIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGF 914
E KG+D+VRRDWSQLA GK V+ ++L E+ L+++L +H ++KI+T + G
Sbjct: 1083 EHKGLDIVRRDWSQLAVMVGKAVLDEVLSEKP-----LEEKLDAVHAQLEKIKTQIAEGV 1137
Query: 915 VPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQGDTISYIICEDGTSEA 974
VPL L ITKQLT+ P+EY + +LPHVQVALR+N +++ K+GD + Y+IC DGT+ A
Sbjct: 1138 VPLPLFVITKQLTRTPQEYANSASLPHVQVALRMNRERNRRYKKGDMVDYVICLDGTTNA 1197
Query: 975 ATQRAYNIEELKNNS--KLKIDVNYYLSQQIHPVVTRLLEPIEGTDAVRIAECLGLDTSL 1032
A QRAY+++ELK + KL++D NYYL QIHPVVTR++E +EGTDA RIAECLG+D +
Sbjct: 1198 AMQRAYHLDELKTSEDKKLQLDTNYYLGHQIHPVVTRMVEVLEGTDASRIAECLGMDPTK 1257
Query: 1033 YRSQI----KESIQQSE-ENILGVGEAEEVKYQFCDKFEFTCMNPSCKQVN-TVEAPTRL 1086
+R +E+ +QSE E++L + Y+ C+ F F C+ +Q+ + P
Sbjct: 1258 FRQNAQRTQRENTEQSEGESLL---KTTLQLYRLCEPFRFQCVTCKTEQLMASAYRPGPS 1314
Query: 1087 STHGVVFVLDECINPECKVPPYTYLPHLINKLSQDMNKYIVKYYEGWLKCEDPGCSDLTR 1146
++H + VL +C EC+ P YL + N+L M +Y+ ++Y+ WL C+ P C+ TR
Sbjct: 1315 NSH--IAVLQQCAKSECQTAPIQYLASVRNQLQLSMRQYVQRFYKNWLVCDHPDCNFNTR 1372
Query: 1147 RCPLGLKTR--LCTTCHKYKLHRVYTELQLYQQLSFFHYICDITKALTKSDTPSIKFDSE 1204
L K+ LC C L R YTE LY QL + ++ D+ K T P++ + E
Sbjct: 1373 THSLRKKSHRPLCQKCRSGSLLRQYTERDLYNQLCYLRFMFDLGKQ-TLQQKPTLTPELE 1431
Query: 1205 TYMGYCKMKQHVERFLESSAYNIVDLKKLFSCEEKQPKLSRGVEREHV 1252
Y + + V++ L+SS+Y I+ L KLF+ Q L V + +
Sbjct: 1432 --QAYQLLYETVDQQLQSSSYVIISLSKLFARSLAQMSLQPSVAQPQI 1477
Score = 369 (135.0 bits), Expect = 2.7e-218, Sum P(3) = 2.7e-218
Identities = 109/363 (30%), Positives = 172/363 (47%)
Query: 257 EMNVAEQSKEEPVDDGLWEQMQIDDWDNSQQTQDVLPEQAKVXXXXXXXXXXXXXXKVDV 316
E A+++ E+P D + +DD +N + +Q + KV
Sbjct: 249 EKTPAKKATEDPFSDNEMDFSCLDDDENQFDVEKT--QQTEKVSQTKTAAEKTSQSKV-- 304
Query: 317 TNVESVSSAVELSTSPPPQVVEKKEHKCAEWEAIQTEPSTSEPQVHSRTADDSLPLATDH 376
E + E + SP E WE+I E V + T DS +++D
Sbjct: 305 --AEKSAPKKETTGSPKESESEDISRLLNNWESICQMDDDFEKSVLT-TEQDST-ISSDQ 360
Query: 377 ENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEH 436
+ R ++ +A+ED K PG V+LFG+ S C+ VQNI+R +YLLPR
Sbjct: 361 Q----LRFWYWEAYEDPVKMPGEVFLFGRTA-----DGKSVCLRVQNINRVLYLLPRQFL 411
Query: 437 LK------TKEPVSIAQVYSEFD-QIATQYKILDFKSRKIEKKYAFNLPG--VPDLSEYL 487
L TK+ V++A +Y EFD ++A Q K+ F+SRK+ K +A + G VP +YL
Sbjct: 412 LDPISKEPTKQKVTVADIYKEFDSEVANQLKLEFFRSRKVTKSFAHHAIGIEVPQSCDYL 471
Query: 488 EVRYSAK--CPALPSDLSGDTFSHVFGTKSSFLENLLLERKIKGPSWLEFPEAEKFPSRI 545
EV Y K P L +D ++ +H+FG ++ LE LL+RKIKGP WL+ + P+ +
Sbjct: 472 EVHYDGKKPLPNLSADKKYNSIAHIFGATTNALERFLLDRKIKGPCWLQVTGFKVSPTPM 531
Query: 546 SWCKYEVQCNQMEKIRITNVCGN--------VLS---RTLMGGRSERNEFLLLHAF-HEK 593
SWC EV + + + + G +LS RT M ++ RNE ++ H +
Sbjct: 532 SWCNTEVTLTEPKNVELVQDKGKPAPPPPLTLLSLNVRTSMNPKTSRNEICMISMLTHNR 591
Query: 594 SYV 596
++
Sbjct: 592 FHI 594
Score = 168 (64.2 bits), Expect = 2.7e-218, Sum P(3) = 2.7e-218
Identities = 49/159 (30%), Positives = 76/159 (47%)
Query: 46 RAKRQKIDKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEXXX 105
RAKRQ++DK +FAA ++L+ LKG K K E D+ VY+ V E+EY +R ++
Sbjct: 9 RAKRQRVDKNGRFAAMERLRQLKGTKNKCKVEDQVDD-VYDVVDEREYAKRAQEKY-GDD 66
Query: 106 XXXXXXXXYVEDGREIFDDDIE----DVPQXXXXXXXXXXXXNIQNPN-------AKGDI 154
Y ED R+ F+D+ E + + + + P K I
Sbjct: 67 WIEEDGTGYAEDLRDFFEDEDEYSDGEEDRKDSKKKKGVAPNSKKRPRENEKPVTGKASI 126
Query: 155 QKLLANMPVKKKKKEEVQLNNDDVLADLLSEVNTTIAPT 193
+ L +N V KK + + +DD+LAD+L E+ A T
Sbjct: 127 KNLFSNA-VPKKMDVKTSVKDDDILADILGEIKEEPAAT 164
Score = 52 (23.4 bits), Expect = 8.9e-169, Sum P(2) = 8.9e-169
Identities = 14/53 (26%), Positives = 28/53 (52%)
Query: 153 DIQKLLANMPVKKKKKEEVQLNNDDVLADLLSEVNTTIAPTLKLNTKTNEIVI 205
D+Q L + +K K+ E +++N DD+L + E +I + L + N ++
Sbjct: 726 DLQTLCKQV-LKLKESERMEVNADDLLE--MYEKGESITKLISLTMQDNSYLL 775
Score = 50 (22.7 bits), Expect = 2.5e-41, Sum P(3) = 2.5e-41
Identities = 16/62 (25%), Positives = 30/62 (48%)
Query: 1104 KVPPYTYLPHLINKLSQDMNKYIVKYYEGWLKCE-DPGCSDLTRRCPLGLKTRLCTTCHK 1162
K+P ++ + L +LSQ K +++++ G + C+ + R L+T LC K
Sbjct: 680 KIPQWSRMGRL--RLSQSFGKRLLEHFVGRMVCDVKRSAEECIRARSYDLQT-LCKQVLK 736
Query: 1163 YK 1164
K
Sbjct: 737 LK 738
Score = 44 (20.5 bits), Expect = 4.9e-07, Sum P(2) = 4.9e-07
Identities = 16/61 (26%), Positives = 31/61 (50%)
Query: 440 KEPVSIAQVYSEFDQIATQYKILDFKSRKI--EKKYAFNLPGVPDLSEYLEVRYSAKCPA 497
++PV ++ + D T+ IL + +++ +K L PDLS L+++Y + A
Sbjct: 900 QQPVDADELPTLPDS-KTEPGILPLQLKRLVESRKEVKKLMAAPDLSPELQMQYHIRQMA 958
Query: 498 L 498
L
Sbjct: 959 L 959
Score = 38 (18.4 bits), Expect = 4.4e-40, Sum P(3) = 4.4e-40
Identities = 12/46 (26%), Positives = 19/46 (41%)
Query: 1177 QLSFFHYICDITKALTKSDTPSIKFDSETYMGYCKMKQHVERFLES 1222
Q +F ++C +T+ S + F+ Y K ER L S
Sbjct: 600 QPAFNRHMCALTRPAVVSWPLDLNFEMAKYKSTTVHKHDSERALLS 645
>UNIPROTKB|E1BJF4 [details] [associations]
symbol:POLA1 "DNA polymerase" species:9913 "Bos taurus"
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
[GO:0016363 "nuclear matrix" evidence=IEA] [GO:0008283 "cell
proliferation" evidence=IEA] [GO:0006303 "double-strand break
repair via nonhomologous end joining" evidence=IEA] [GO:0006273
"lagging strand elongation" evidence=IEA] [GO:0006272 "leading
strand elongation" evidence=IEA] [GO:0006270 "DNA replication
initiation" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005635 "nuclear envelope" evidence=IEA]
[GO:0003896 "DNA primase activity" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000785 "chromatin" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000084 "S phase of mitotic
cell cycle" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0001882 "nucleoside binding"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0005737 GO:GO:0005635 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 GO:GO:0003677 GO:GO:0008283 GO:GO:0000785
GO:GO:0003682 GO:GO:0006270 GO:GO:0001882 SUPFAM:SSF53098
GO:GO:0016363 GO:GO:0000084 GO:GO:0006303 GO:GO:0003896
GO:GO:0003887 GO:GO:0006273 GO:GO:0006269 GO:GO:0006272
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658 OMA:GSGTDME
InterPro:IPR024647 Pfam:PF12254 TIGRFAMs:TIGR00592
GeneTree:ENSGT00550000074891 EMBL:DAAA02074352 IPI:IPI00717665
Ensembl:ENSBTAT00000010742 Uniprot:E1BJF4
Length = 1351
Score = 1378 (490.1 bits), Expect = 8.3e-215, Sum P(3) = 8.3e-215
Identities = 293/592 (49%), Positives = 388/592 (65%)
Query: 560 IRITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYXXX-------XXXXXXX 612
++ITN+ GN++SRTLMGGRSERNEFLLLHAF+E +Y++PDKQ
Sbjct: 772 LQITNIAGNIMSRTLMGGRSERNEFLLLHAFYENNYIVPDKQTFRKPQQKLGDEDEDIDG 831
Query: 613 XXXXXXXXRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP----- 667
RKKAAYSGGLVL+PK GFYDKFI+L+DFNSLYPSIIQE+NICFTT+
Sbjct: 832 DTNKYKKGRKKAAYSGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTVQRVASE 891
Query: 668 -VRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQV--KALMKQPNLSSDLLMQY 724
++++D + + E LP+ ++ GILP EI+KLVE RR+ K LM Q L S +QY
Sbjct: 892 AQKVVEDGEQEQIPE-LPDPSLEMGILPREIRKLVERRRETIQKHLMPQICLLSLCGLQY 950
Query: 725 DIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGD 784
DIRQKALKLTANSMYGCLGF SRF+A+PLAALVT KGREIL++TK +V+ +N EVIYGD
Sbjct: 951 DIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREILMHTKEMVQKMNLEVIYGD 1010
Query: 785 TDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVXXXXXXXXXXXXXXXXXXX 844
TDS+MI+ N + + VFK+GN++KSE NKLYK LE+DIDG+
Sbjct: 1011 TDSIMINTNSTNLEEVFKLGNKVKSEVNKLYKLLEIDIDGIFKSLLLLKKKKYAALIVEP 1070
Query: 845 XXNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMK 904
+G + QE+KG+D+VRRDW LA + G FVI QIL +Q+ D ++NI + +
Sbjct: 1071 TSDGNYVTKQEVKGLDIVRRDWCDLAKDTGNFVIGQILSDQNR-----DTIVENIQKRLI 1125
Query: 905 KIRTDLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQGDTISY 964
+I ++ NG VP++ EI K LTK P++Y D+K+LPHV VAL +N+ +K+K GDT+SY
Sbjct: 1126 EIGENVLNGSVPVSQFEINKALTKDPQDYPDKKSLPHVHVALWINSQGGRKVKAGDTVSY 1185
Query: 965 IICEDGTSEAATQRAYNIEELKNNSKLKIDVNYYLSQQIHPVVTRLLEPIEGTDAVRIAE 1024
+IC+DG++ A QRAY E+L+ L ID YYL+QQIHPVV R+ EPI+G DA+ IA
Sbjct: 1186 VICQDGSNLTAGQRAYAPEQLQKQDNLSIDTQYYLAQQIHPVVARICEPIDGIDAILIAS 1245
Query: 1025 CLGLDTSLYRSQIKESIQQSEEN--ILGVGEA---EEVKYQFCDKFEFTCMNPSCKQVNT 1079
LGLD + +R + EEN +LG G A +E KY+ C++F+ C P+C N
Sbjct: 1246 WLGLDPTQFRVH---HYHKDEENDALLG-GPAHLTDEEKYKDCERFKCPC--PTCGTENI 1299
Query: 1080 VEAPTRLSTHGVVFVLDECINPECKVPPYTYLPHLINKLSQDMNKYIVKYYE 1131
++ S + L C N CK P T++ L NKL D+ + I KYYE
Sbjct: 1300 YDSVLDGSGTDMEPSLYRCSNINCKASPLTFMVQLSNKLIMDIRRCIKKYYE 1351
Score = 542 (195.9 bits), Expect = 8.3e-215, Sum P(3) = 8.3e-215
Identities = 117/268 (43%), Positives = 163/268 (60%)
Query: 347 WEAIQTEPSTSEPQVHSRTADDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKV 406
W+ Q E +S + + LPL + ++VF+ ++LDA+ED Y QPG V+LFGKV
Sbjct: 313 WDMDQ-EDDSSFSALEVQVDSSHLPLVKGADEEQVFQFYWLDAYEDPYSQPGVVFLFGKV 371
Query: 407 FVKENNSHSSCCVIVQNIDRKIYLLPRSEH--LKT-KE---PVSIAQVYSEFDQ-IATQY 459
+++ +H SCCV+V+NI+R + LPR L T KE PV++ VY EFD+ IA +Y
Sbjct: 372 WIESAETHVSCCVMVKNIERSLCFLPREMKVDLNTGKESGTPVTMKDVYDEFDEKIAAKY 431
Query: 460 KILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKSSFLE 519
KI+ FKS+ +EK YAF +P VP+ SEYLEVRYSA+ P LP DL G+TFSHVFGT +S LE
Sbjct: 432 KIMKFKSKVVEKNYAFEIPDVPEKSEYLEVRYSAEMPQLPQDLKGETFSHVFGTNTSSLE 491
Query: 520 NLLLERKIKGPSWLEFPEAEKFPSRISWCKYEVQCNQMEKIRITNVCGN----VLS---R 572
L+ RKIKGP WLE + ISWCK E + + + + G V+S +
Sbjct: 492 LFLMNRKIKGPCWLEVKNPQLLNQPISWCKVEAMVLKPDLVNVIKDVGPPPVVVMSLSMK 551
Query: 573 TLMGGRSERNEFLLLHAFHEKSYVLPDK 600
T+ ++ NE + + A S+ L DK
Sbjct: 552 TMQNAKTHENEIIAVSALVHHSFAL-DK 578
Score = 195 (73.7 bits), Expect = 8.3e-215, Sum P(3) = 8.3e-215
Identities = 50/157 (31%), Positives = 77/157 (49%)
Query: 39 TQKMEGGRAKRQKIDKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVL 98
++ + R++R+K K + A ++LK K G K+KYE +VYEEV E++Y++ V
Sbjct: 19 SRSLVASRSRREKKSKKGRQQALERLKRAKA-GEKYKYEVEDFTSVYEEVDEEQYSKLVQ 77
Query: 99 KRQEXXXXXXXXXXXYVEDGREIFDDDIEDVPQXXXXXXXXXXXXNIQNPNAK------- 151
RQ+ YVEDGREIFDDD+ED N K
Sbjct: 78 ARQDDDWIVDDDGIGYVEDGREIFDDDLEDDALDSHEKGKDNKACNKDKRTVKRAAVTKP 137
Query: 152 GDIQKLLANMPVKKKKKEEVQLNNDDVLADLLSEVNT 188
+I+ + +K + V L+ DD+L D+L ++NT
Sbjct: 138 NNIKSMFIASAGRKTVDKAVDLSKDDLLGDILQDLNT 174
Score = 46 (21.3 bits), Expect = 5.6e-63, Sum P(3) = 5.6e-63
Identities = 22/83 (26%), Positives = 35/83 (42%)
Query: 848 GKMICSQEIKGVDVVR-RDW--SQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMK 904
G+MIC EI +++R + + S+L + K I E YS L + EH
Sbjct: 693 GRMICDVEISAKELIRCKSYHLSELVQQILKTERIVIPIETIRNMYSDSSHLLYLLEHTW 752
Query: 905 KIRTDLDNGFVPLTLLEITKQLT 927
K + L +L + Q+T
Sbjct: 753 KDARFILQIMCELNVLPLALQIT 775
Score = 39 (18.8 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 1203 SETYMGYCKMKQHVERFL 1220
+ET++ C M +++ER L
Sbjct: 376 AETHVSCCVMVKNIERSL 393
>WB|WBGene00012936 [details] [associations]
symbol:Y47D3A.29a species:6239 "Caenorhabditis elegans"
[GO:0006260 "DNA replication" evidence=IEA;ISS] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;ISS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=IEA] [GO:0001882 "nucleoside binding" evidence=IEA]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0035046 "pronuclear migration" evidence=IMP]
[GO:0008340 "determination of adult lifespan" evidence=IMP]
[GO:0005634 "nucleus" evidence=ISS] InterPro:IPR004578
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR015088 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 Pfam:PF08996 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0008340 GO:GO:0009792
GO:GO:0035046 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
GO:GO:0001882 SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0006303
GO:GO:0003887 EMBL:AL117202 eggNOG:COG0417 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
HOGENOM:HOG000163524 OMA:GSGTDME InterPro:IPR024647 Pfam:PF12254
TIGRFAMs:TIGR00592 GeneTree:ENSGT00550000074891
RefSeq:NP_001255108.1 ProteinModelPortal:C7IVS4 SMR:C7IVS4
STRING:C7IVS4 PaxDb:C7IVS4 EnsemblMetazoa:Y47D3A.29b GeneID:176544
KEGG:cel:CELE_Y47D3A.29 CTD:176544 WormBase:Y47D3A.29b
ArrayExpress:C7IVS4 Uniprot:C7IVS4
Length = 1456
Score = 1266 (450.7 bits), Expect = 6.3e-181, Sum P(4) = 6.3e-181
Identities = 291/680 (42%), Positives = 397/680 (58%)
Query: 560 IRITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYXXXXXXXXXXXXXXXXX 619
I+I+ + G + SRT+MGGR+ERNE+LLLHAF + + PDK
Sbjct: 751 IQISQIVGGIASRTMMGGRAERNEYLLLHAFEKADLIAPDKYNSSESKKKKEESQEGDEK 810
Query: 620 XRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTL 679
KA YSGGLVLEPKKG Y+ I+L+DFNSLYPSIIQEYNIC+TT+ D ++
Sbjct: 811 KSGKAQYSGGLVLEPKKGLYETLILLLDFNSLYPSIIQEYNICYTTLEYSKDSDEQLS-- 868
Query: 680 CEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMY 739
+P+ G+LP EI+KLVE RR VK+LMK + Q DIRQ ALKLTANSMY
Sbjct: 869 ---VPQSTDIEGVLPREIRKLVECRRDVKSLMKSERNEAKK-KQMDIRQMALKLTANSMY 924
Query: 740 GCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDS 799
GCLGF SRF+A+PLAALVTAKGREIL+++K LVE + Y V+YGDTDS+MI+ N D +
Sbjct: 925 GCLGFQYSRFYAKPLAALVTAKGREILMHSKDLVEKMGYSVVYGDTDSIMINTNSVDLVA 984
Query: 800 VFKIGNQIKSECNKLYKQLELDIDGVXXXXXXXXXXXXXXXXXXXXXNGKMICSQEIKGV 859
K+GN+IK NK ++ LELD+DGV + ++E+KG+
Sbjct: 985 AKKLGNEIKKAVNKCHRLLELDLDGVFKRMLLLKKKKYAALTINPDTK---VEAKELKGL 1041
Query: 860 DVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTL 919
D+VRRDWSQLA E G V+ +ILD S T D+ + +I + +++IR LD+G VPL +
Sbjct: 1042 DIVRRDWSQLAKETGTAVVDKILDA-SLTR---DEMVSSIDDLLREIRAKLDSGTVPLEM 1097
Query: 920 LEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQGDTISYIICEDGTSEAATQRA 979
+I+KQLT+ PE+Y D KA H VA RLN + L+ D + Y+ICEDGT ATQRA
Sbjct: 1098 FQISKQLTRNPEQYADVKAQCHAAVAQRLNKSGKFNLRHNDIVEYVICEDGTDNPATQRA 1157
Query: 980 YNIEELKNNSKLKIDVNYYLSQQIHPVVTRLLEPIEGTDAVRIAECLGLDTSLYR--SQI 1037
Y+ E+ NS LKID+ YYL+QQIHPVV+RL+EPIE TDAVRIAE LGLD++ YR +
Sbjct: 1158 YHRTEMAENSALKIDLLYYLAQQIHPVVSRLVEPIEETDAVRIAENLGLDSTNYRRAAAA 1217
Query: 1038 KESIQQSEENILGVGEAEEVKYQFCDKFEFTCMNPSCKQVN----TVEAPTRLSTHGVVF 1093
+ S + +EE+ E Y C+ C C N T + T S+ ++F
Sbjct: 1218 QASQRAAEEDCAWHQE----NYDLCEGIHVICPLDGCGHSNVIRETFDCVTDASSPRLLF 1273
Query: 1094 VLDECINPECKVPPYTYLPHLINKLSQDMNKYIVKYYEGWLKCEDPGCSDLTRR-----C 1148
C + + + N++ + M++++ +++ KC++P C TR C
Sbjct: 1274 --SGCAQCQGSWDLQEHQAVIGNQVDRQMSEFVARHHLAAFKCDEPTCEFKTRVQTMKWC 1331
Query: 1149 PLGLKTRLCTTCHKYKLHRVYTELQLYQQLSFFHYICDITKALTKSDTPSIKFDSETYMG 1208
GL+ C C L R YT QL+ Q FF I D+ A+ K ++G
Sbjct: 1332 REGLE---CIRCSTGVLRREYTSKQLFDQQMFFRTILDVDAAVRKLSDAQKSSCLRNFIG 1388
Query: 1209 YCKMKQHVE--RFLESSAYN 1226
K ++ +E +F +SA N
Sbjct: 1389 K-KWEKSLENGKFRRNSAKN 1407
Score = 372 (136.0 bits), Expect = 6.3e-181, Sum P(4) = 6.3e-181
Identities = 84/251 (33%), Positives = 139/251 (55%)
Query: 319 VESVSSAVELSTSPPPQVVEK--KEHKCAEWEAIQTEPSTSEPQVHSRTADDSLPLATDH 376
++ + V++ T +V + K +W + + +V +T ++
Sbjct: 260 IQKIEETVKMETEHLEEVEDSLAKFRVIEDWTGGSSSQEDEDVKVEVKTGSEAFYTMGGE 319
Query: 377 ENK-KVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSE 435
+N K RM+++DA+ED++K GTVYLFGKV N+ +C ++V+NI RK+Y +PR++
Sbjct: 320 DNTTKAIRMYWIDAYEDVHKANGTVYLFGKVKTS-GNAWETCSIVVKNICRKVYFMPRTK 378
Query: 436 HLKTKEPVSIAQVYSEF-DQIATQYKILDFKSRKIEKKY----AFNLPGVPDLSEYLEVR 490
+L T E S+A+++ E D + ++ +FK + +EK+ +F G S +EV
Sbjct: 379 NLSTGEESSLAELHKEIGDVLRNKFNTHEFKCKMVEKELIRDESFGY-GCGTKSPLMEVL 437
Query: 491 YSAKCPALPSDLSGDTFSHVFGTKSSFLENLLLERKIKGPSWLEFPEAEKFPSRISWCKY 550
Y A+ LPSDL GDTFS+ F T + LE LL+E+K GP W+E ++ S CKY
Sbjct: 438 YPAEKGKLPSDLKGDTFSNTFNTSVTPLERLLIEKKFMGPGWIELYNYSDPKAKTSNCKY 497
Query: 551 EVQCNQMEKIR 561
E + + MEK+R
Sbjct: 498 EFEVD-MEKMR 507
Score = 113 (44.8 bits), Expect = 6.3e-181, Sum P(4) = 6.3e-181
Identities = 34/142 (23%), Positives = 65/142 (45%)
Query: 54 KTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEXXXXXXXXXXX 113
K+ + +A ++LK + G ++ E E+VY+ V + EY + V KRQ+
Sbjct: 25 KSKELSAIEQLKLARSTGKAYRPELDV-EDVYDTVDDDEYEKIVAKRQKDNFIVDDDGMG 83
Query: 114 YVEDGREIFDDDIEDVPQXXXXXXXXXXXXNIQNPNA---KGDIQKLLANMPVKKKKKEE 170
YV++G + F+DD ED + P KG + L+ KK E
Sbjct: 84 YVDNGVD-FEDDYEDDYAPSSSKNSNSSKKGEKKPKKDKKKGGLHAFLSTTSTKKPIDES 142
Query: 171 V---QLNNDDVLADLLSEVNTT 189
V + ++D+ + ++L ++ ++
Sbjct: 143 VVKAEFDDDEEVKNMLEQLGSS 164
Score = 55 (24.4 bits), Expect = 6.3e-181, Sum P(4) = 6.3e-181
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 1217 ERFLESSAYNIVDLKKLFS 1235
E++LE +AYN VDL +F+
Sbjct: 1432 EKYLEKNAYNRVDLSYIFA 1450
Score = 54 (24.1 bits), Expect = 1.8e-147, Sum P(4) = 1.8e-147
Identities = 15/53 (28%), Positives = 29/53 (54%)
Query: 246 EIKSNDSVMEVEMNVAEQSKE-EPVDDGLWEQMQIDDW---DNSQQTQDVLPE 294
E + ++ ++E V +++ E V+D L + I+DW +SQ+ +DV E
Sbjct: 253 EAPTAPAIQKIEETVKMETEHLEEVEDSLAKFRVIEDWTGGSSSQEDEDVKVE 305
Score = 37 (18.1 bits), Expect = 5.7e-135, Sum P(3) = 5.7e-135
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 439 TKEPVSIAQVYSEFD 453
TK+P+ + V +EFD
Sbjct: 135 TKKPIDESVVKAEFD 149
>UNIPROTKB|C7IVS4 [details] [associations]
symbol:Y47D3A.29 "DNA polymerase" species:6239
"Caenorhabditis elegans" [GO:0019985 "translesion synthesis"
evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0006260 "DNA replication" evidence=IBA] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IBA] [GO:0005634 "nucleus"
evidence=IBA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IBA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0008340 GO:GO:0009792 GO:GO:0035046 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 GO:GO:0001882 SUPFAM:SSF53098
GO:GO:0008408 GO:GO:0006303 GO:GO:0003887 EMBL:AL117202
eggNOG:COG0417 GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0005658 HOGENOM:HOG000163524 OMA:GSGTDME InterPro:IPR024647
Pfam:PF12254 TIGRFAMs:TIGR00592 GeneTree:ENSGT00550000074891
RefSeq:NP_001255108.1 ProteinModelPortal:C7IVS4 SMR:C7IVS4
STRING:C7IVS4 PaxDb:C7IVS4 EnsemblMetazoa:Y47D3A.29b GeneID:176544
KEGG:cel:CELE_Y47D3A.29 CTD:176544 WormBase:Y47D3A.29b
ArrayExpress:C7IVS4 Uniprot:C7IVS4
Length = 1456
Score = 1266 (450.7 bits), Expect = 6.3e-181, Sum P(4) = 6.3e-181
Identities = 291/680 (42%), Positives = 397/680 (58%)
Query: 560 IRITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYXXXXXXXXXXXXXXXXX 619
I+I+ + G + SRT+MGGR+ERNE+LLLHAF + + PDK
Sbjct: 751 IQISQIVGGIASRTMMGGRAERNEYLLLHAFEKADLIAPDKYNSSESKKKKEESQEGDEK 810
Query: 620 XRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTL 679
KA YSGGLVLEPKKG Y+ I+L+DFNSLYPSIIQEYNIC+TT+ D ++
Sbjct: 811 KSGKAQYSGGLVLEPKKGLYETLILLLDFNSLYPSIIQEYNICYTTLEYSKDSDEQLS-- 868
Query: 680 CEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMY 739
+P+ G+LP EI+KLVE RR VK+LMK + Q DIRQ ALKLTANSMY
Sbjct: 869 ---VPQSTDIEGVLPREIRKLVECRRDVKSLMKSERNEAKK-KQMDIRQMALKLTANSMY 924
Query: 740 GCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDS 799
GCLGF SRF+A+PLAALVTAKGREIL+++K LVE + Y V+YGDTDS+MI+ N D +
Sbjct: 925 GCLGFQYSRFYAKPLAALVTAKGREILMHSKDLVEKMGYSVVYGDTDSIMINTNSVDLVA 984
Query: 800 VFKIGNQIKSECNKLYKQLELDIDGVXXXXXXXXXXXXXXXXXXXXXNGKMICSQEIKGV 859
K+GN+IK NK ++ LELD+DGV + ++E+KG+
Sbjct: 985 AKKLGNEIKKAVNKCHRLLELDLDGVFKRMLLLKKKKYAALTINPDTK---VEAKELKGL 1041
Query: 860 DVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTL 919
D+VRRDWSQLA E G V+ +ILD S T D+ + +I + +++IR LD+G VPL +
Sbjct: 1042 DIVRRDWSQLAKETGTAVVDKILDA-SLTR---DEMVSSIDDLLREIRAKLDSGTVPLEM 1097
Query: 920 LEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQGDTISYIICEDGTSEAATQRA 979
+I+KQLT+ PE+Y D KA H VA RLN + L+ D + Y+ICEDGT ATQRA
Sbjct: 1098 FQISKQLTRNPEQYADVKAQCHAAVAQRLNKSGKFNLRHNDIVEYVICEDGTDNPATQRA 1157
Query: 980 YNIEELKNNSKLKIDVNYYLSQQIHPVVTRLLEPIEGTDAVRIAECLGLDTSLYR--SQI 1037
Y+ E+ NS LKID+ YYL+QQIHPVV+RL+EPIE TDAVRIAE LGLD++ YR +
Sbjct: 1158 YHRTEMAENSALKIDLLYYLAQQIHPVVSRLVEPIEETDAVRIAENLGLDSTNYRRAAAA 1217
Query: 1038 KESIQQSEENILGVGEAEEVKYQFCDKFEFTCMNPSCKQVN----TVEAPTRLSTHGVVF 1093
+ S + +EE+ E Y C+ C C N T + T S+ ++F
Sbjct: 1218 QASQRAAEEDCAWHQE----NYDLCEGIHVICPLDGCGHSNVIRETFDCVTDASSPRLLF 1273
Query: 1094 VLDECINPECKVPPYTYLPHLINKLSQDMNKYIVKYYEGWLKCEDPGCSDLTRR-----C 1148
C + + + N++ + M++++ +++ KC++P C TR C
Sbjct: 1274 --SGCAQCQGSWDLQEHQAVIGNQVDRQMSEFVARHHLAAFKCDEPTCEFKTRVQTMKWC 1331
Query: 1149 PLGLKTRLCTTCHKYKLHRVYTELQLYQQLSFFHYICDITKALTKSDTPSIKFDSETYMG 1208
GL+ C C L R YT QL+ Q FF I D+ A+ K ++G
Sbjct: 1332 REGLE---CIRCSTGVLRREYTSKQLFDQQMFFRTILDVDAAVRKLSDAQKSSCLRNFIG 1388
Query: 1209 YCKMKQHVE--RFLESSAYN 1226
K ++ +E +F +SA N
Sbjct: 1389 K-KWEKSLENGKFRRNSAKN 1407
Score = 372 (136.0 bits), Expect = 6.3e-181, Sum P(4) = 6.3e-181
Identities = 84/251 (33%), Positives = 139/251 (55%)
Query: 319 VESVSSAVELSTSPPPQVVEK--KEHKCAEWEAIQTEPSTSEPQVHSRTADDSLPLATDH 376
++ + V++ T +V + K +W + + +V +T ++
Sbjct: 260 IQKIEETVKMETEHLEEVEDSLAKFRVIEDWTGGSSSQEDEDVKVEVKTGSEAFYTMGGE 319
Query: 377 ENK-KVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSE 435
+N K RM+++DA+ED++K GTVYLFGKV N+ +C ++V+NI RK+Y +PR++
Sbjct: 320 DNTTKAIRMYWIDAYEDVHKANGTVYLFGKVKTS-GNAWETCSIVVKNICRKVYFMPRTK 378
Query: 436 HLKTKEPVSIAQVYSEF-DQIATQYKILDFKSRKIEKKY----AFNLPGVPDLSEYLEVR 490
+L T E S+A+++ E D + ++ +FK + +EK+ +F G S +EV
Sbjct: 379 NLSTGEESSLAELHKEIGDVLRNKFNTHEFKCKMVEKELIRDESFGY-GCGTKSPLMEVL 437
Query: 491 YSAKCPALPSDLSGDTFSHVFGTKSSFLENLLLERKIKGPSWLEFPEAEKFPSRISWCKY 550
Y A+ LPSDL GDTFS+ F T + LE LL+E+K GP W+E ++ S CKY
Sbjct: 438 YPAEKGKLPSDLKGDTFSNTFNTSVTPLERLLIEKKFMGPGWIELYNYSDPKAKTSNCKY 497
Query: 551 EVQCNQMEKIR 561
E + + MEK+R
Sbjct: 498 EFEVD-MEKMR 507
Score = 113 (44.8 bits), Expect = 6.3e-181, Sum P(4) = 6.3e-181
Identities = 34/142 (23%), Positives = 65/142 (45%)
Query: 54 KTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEXXXXXXXXXXX 113
K+ + +A ++LK + G ++ E E+VY+ V + EY + V KRQ+
Sbjct: 25 KSKELSAIEQLKLARSTGKAYRPELDV-EDVYDTVDDDEYEKIVAKRQKDNFIVDDDGMG 83
Query: 114 YVEDGREIFDDDIEDVPQXXXXXXXXXXXXNIQNPNA---KGDIQKLLANMPVKKKKKEE 170
YV++G + F+DD ED + P KG + L+ KK E
Sbjct: 84 YVDNGVD-FEDDYEDDYAPSSSKNSNSSKKGEKKPKKDKKKGGLHAFLSTTSTKKPIDES 142
Query: 171 V---QLNNDDVLADLLSEVNTT 189
V + ++D+ + ++L ++ ++
Sbjct: 143 VVKAEFDDDEEVKNMLEQLGSS 164
Score = 55 (24.4 bits), Expect = 6.3e-181, Sum P(4) = 6.3e-181
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 1217 ERFLESSAYNIVDLKKLFS 1235
E++LE +AYN VDL +F+
Sbjct: 1432 EKYLEKNAYNRVDLSYIFA 1450
Score = 54 (24.1 bits), Expect = 1.8e-147, Sum P(4) = 1.8e-147
Identities = 15/53 (28%), Positives = 29/53 (54%)
Query: 246 EIKSNDSVMEVEMNVAEQSKE-EPVDDGLWEQMQIDDW---DNSQQTQDVLPE 294
E + ++ ++E V +++ E V+D L + I+DW +SQ+ +DV E
Sbjct: 253 EAPTAPAIQKIEETVKMETEHLEEVEDSLAKFRVIEDWTGGSSSQEDEDVKVE 305
Score = 37 (18.1 bits), Expect = 5.7e-135, Sum P(3) = 5.7e-135
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 439 TKEPVSIAQVYSEFD 453
TK+P+ + V +EFD
Sbjct: 135 TKKPIDESVVKAEFD 149
>UNIPROTKB|Q9NAH1 [details] [associations]
symbol:Y47D3A.29 "DNA polymerase" species:6239
"Caenorhabditis elegans" [GO:0019985 "translesion synthesis"
evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0006260 "DNA replication" evidence=IBA] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IBA] [GO:0005634 "nucleus"
evidence=IBA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IBA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0008340 GO:GO:0009792 GO:GO:0035046 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 GO:GO:0001882 SUPFAM:SSF53098
GO:GO:0008408 GO:GO:0006303 GO:GO:0003887 EMBL:AL117202
GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
HOGENOM:HOG000163524 InterPro:IPR024647 Pfam:PF12254
TIGRFAMs:TIGR00592 GeneTree:ENSGT00550000074891 HSSP:Q56366
GeneID:176544 KEGG:cel:CELE_Y47D3A.29 CTD:176544
RefSeq:NP_001255109.1 ProteinModelPortal:Q9NAH1 SMR:Q9NAH1
IntAct:Q9NAH1 MINT:MINT-6669806 STRING:Q9NAH1
EnsemblMetazoa:Y47D3A.29a UCSC:Y47D3A.29 WormBase:Y47D3A.29a
InParanoid:Q9NAH1 NextBio:893018 ArrayExpress:Q9NAH1 Uniprot:Q9NAH1
Length = 1428
Score = 1298 (462.0 bits), Expect = 9.0e-180, Sum P(3) = 9.0e-180
Identities = 302/696 (43%), Positives = 409/696 (58%)
Query: 560 IRITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYXXXXXXXXXXXXXXXXX 619
I+I+ + G + SRT+MGGR+ERNE+LLLHAF + + PDK
Sbjct: 751 IQISQIVGGIASRTMMGGRAERNEYLLLHAFEKADLIAPDKYNSSESKKKKEESQEGDEK 810
Query: 620 XRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTL 679
KA YSGGLVLEPKKG Y+ I+L+DFNSLYPSIIQEYNIC+TT+ D ++
Sbjct: 811 KSGKAQYSGGLVLEPKKGLYETLILLLDFNSLYPSIIQEYNICYTTLEYSKDSDEQLS-- 868
Query: 680 CEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMY 739
+P+ G+LP EI+KLVE RR VK+LMK + Q DIRQ ALKLTANSMY
Sbjct: 869 ---VPQSTDIEGVLPREIRKLVECRRDVKSLMKSERNEAKK-KQMDIRQMALKLTANSMY 924
Query: 740 GCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDS 799
GCLGF SRF+A+PLAALVTAKGREIL+++K LVE + Y V+YGDTDS+MI+ N D +
Sbjct: 925 GCLGFQYSRFYAKPLAALVTAKGREILMHSKDLVEKMGYSVVYGDTDSIMINTNSVDLVA 984
Query: 800 VFKIGNQIKSECNKLYKQLELDIDGVXXXXXXXXXXXXXXXXXXXXXNGKMICSQEIKGV 859
K+GN+IK NK ++ LELD+DGV + ++E+KG+
Sbjct: 985 AKKLGNEIKKAVNKCHRLLELDLDGVFKRMLLLKKKKYAALTINPDTK---VEAKELKGL 1041
Query: 860 DVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTL 919
D+VRRDWSQLA E G V+ +ILD S T D+ + +I + +++IR LD+G VPL +
Sbjct: 1042 DIVRRDWSQLAKETGTAVVDKILDA-SLTR---DEMVSSIDDLLREIRAKLDSGTVPLEM 1097
Query: 920 LEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQGDTISYIICEDGTSEAATQRA 979
+I+KQLT+ PE+Y D KA H VA RLN + L+ D + Y+ICEDGT ATQRA
Sbjct: 1098 FQISKQLTRNPEQYADVKAQCHAAVAQRLNKSGKFNLRHNDIVEYVICEDGTDNPATQRA 1157
Query: 980 YNIEELKNNSKLKIDVNYYLSQQIHPVVTRLLEPIEGTDAVRIAECLGLDTSLYR--SQI 1037
Y+ E+ NS LKID+ YYL+QQIHPVV+RL+EPIE TDAVRIAE LGLD++ YR +
Sbjct: 1158 YHRTEMAENSALKIDLLYYLAQQIHPVVSRLVEPIEETDAVRIAENLGLDSTNYRRAAAA 1217
Query: 1038 KESIQQSEENILGVGEAEEVKYQFCDKFEFTCMNPSCKQVN----TVEAPTRLSTHGVVF 1093
+ S + +EE+ E Y C+ C C N T + T S+ ++F
Sbjct: 1218 QASQRAAEEDCAWHQE----NYDLCEGIHVICPLDGCGHSNVIRETFDCVTDASSPRLLF 1273
Query: 1094 VLDECINPECKVPPYTYLPHLINKLSQDMNKYIVKYYEGWLKCEDPGCSDLTRR-----C 1148
C + + + N++ + M++++ +++ KC++P C TR C
Sbjct: 1274 --SGCAQCQGSWDLQEHQAVIGNQVDRQMSEFVARHHLAAFKCDEPTCEFKTRVQTMKWC 1331
Query: 1149 PLGLKTRLCTTCHKYKLHRVYTELQLYQQLSFFHYICDITKALTK-SDTP--SIKFDSET 1205
GL+ C C L R YT QL+ Q FF I D+ A+ K SD + K E
Sbjct: 1332 REGLE---CIRCSTGVLRREYTSKQLFDQQMFFRTILDVDAAVRKLSDAQKKAAKVRVE- 1387
Query: 1206 YMGYCKMKQHV------ERFLESSAYNIVDLKKLFS 1235
Y G CK+ + E++LE +AYN VDL +F+
Sbjct: 1388 YNG-CKIDSMMLADRINEKYLEKNAYNRVDLSYIFA 1422
Score = 372 (136.0 bits), Expect = 9.0e-180, Sum P(3) = 9.0e-180
Identities = 84/251 (33%), Positives = 139/251 (55%)
Query: 319 VESVSSAVELSTSPPPQVVEK--KEHKCAEWEAIQTEPSTSEPQVHSRTADDSLPLATDH 376
++ + V++ T +V + K +W + + +V +T ++
Sbjct: 260 IQKIEETVKMETEHLEEVEDSLAKFRVIEDWTGGSSSQEDEDVKVEVKTGSEAFYTMGGE 319
Query: 377 ENK-KVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSE 435
+N K RM+++DA+ED++K GTVYLFGKV N+ +C ++V+NI RK+Y +PR++
Sbjct: 320 DNTTKAIRMYWIDAYEDVHKANGTVYLFGKVKTS-GNAWETCSIVVKNICRKVYFMPRTK 378
Query: 436 HLKTKEPVSIAQVYSEF-DQIATQYKILDFKSRKIEKKY----AFNLPGVPDLSEYLEVR 490
+L T E S+A+++ E D + ++ +FK + +EK+ +F G S +EV
Sbjct: 379 NLSTGEESSLAELHKEIGDVLRNKFNTHEFKCKMVEKELIRDESFGY-GCGTKSPLMEVL 437
Query: 491 YSAKCPALPSDLSGDTFSHVFGTKSSFLENLLLERKIKGPSWLEFPEAEKFPSRISWCKY 550
Y A+ LPSDL GDTFS+ F T + LE LL+E+K GP W+E ++ S CKY
Sbjct: 438 YPAEKGKLPSDLKGDTFSNTFNTSVTPLERLLIEKKFMGPGWIELYNYSDPKAKTSNCKY 497
Query: 551 EVQCNQMEKIR 561
E + + MEK+R
Sbjct: 498 EFEVD-MEKMR 507
Score = 113 (44.8 bits), Expect = 9.0e-180, Sum P(3) = 9.0e-180
Identities = 34/142 (23%), Positives = 65/142 (45%)
Query: 54 KTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEXXXXXXXXXXX 113
K+ + +A ++LK + G ++ E E+VY+ V + EY + V KRQ+
Sbjct: 25 KSKELSAIEQLKLARSTGKAYRPELDV-EDVYDTVDDDEYEKIVAKRQKDNFIVDDDGMG 83
Query: 114 YVEDGREIFDDDIEDVPQXXXXXXXXXXXXNIQNPNA---KGDIQKLLANMPVKKKKKEE 170
YV++G + F+DD ED + P KG + L+ KK E
Sbjct: 84 YVDNGVD-FEDDYEDDYAPSSSKNSNSSKKGEKKPKKDKKKGGLHAFLSTTSTKKPIDES 142
Query: 171 V---QLNNDDVLADLLSEVNTT 189
V + ++D+ + ++L ++ ++
Sbjct: 143 VVKAEFDDDEEVKNMLEQLGSS 164
Score = 54 (24.1 bits), Expect = 3.0e-146, Sum P(3) = 3.0e-146
Identities = 15/53 (28%), Positives = 29/53 (54%)
Query: 246 EIKSNDSVMEVEMNVAEQSKE-EPVDDGLWEQMQIDDW---DNSQQTQDVLPE 294
E + ++ ++E V +++ E V+D L + I+DW +SQ+ +DV E
Sbjct: 253 EAPTAPAIQKIEETVKMETEHLEEVEDSLAKFRVIEDWTGGSSSQEDEDVKVE 305
Score = 37 (18.1 bits), Expect = 4.1e-134, Sum P(2) = 4.1e-134
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 439 TKEPVSIAQVYSEFD 453
TK+P+ + V +EFD
Sbjct: 135 TKKPIDESVVKAEFD 149
>UNIPROTKB|O48653 [details] [associations]
symbol:LOC_Os01g64820 "DNA polymerase alpha catalytic
subunit" species:39947 "Oryza sativa Japonica Group" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS;IDA]
[GO:0003896 "DNA primase activity" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0006269 "DNA replication, synthesis of
RNA primer" evidence=IDA] [GO:0006270 "DNA replication initiation"
evidence=IEP] [GO:0006273 "lagging strand elongation" evidence=IEP]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR015088
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 Pfam:PF08996
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0005634
GO:GO:0000166 GO:GO:0046872 GO:GO:0003677 GO:GO:0051539
GO:GO:0006270 GO:GO:0001882 SUPFAM:SSF53098 GO:GO:0003896
GO:GO:0003887 GO:GO:0006273 eggNOG:COG0417 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR024647 Pfam:PF12254
TIGRFAMs:TIGR00592 OMA:CASIQGT EMBL:AB004461 EMBL:AP003286
STRING:O48653 Gramene:O48653 Uniprot:O48653
Length = 1534
Score = 1071 (382.1 bits), Expect = 8.1e-157, Sum P(5) = 8.1e-157
Identities = 261/630 (41%), Positives = 359/630 (56%)
Query: 561 RITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDK-----QYXXXXXXXXXXXXX 615
++TN+ GN+ +TL G R++R E+LLLHAFH + +++PDK ++
Sbjct: 818 QLTNISGNLWGKTLQGSRAQRVEYLLLHAFHARKFIVPDKFARSKEFNSTKRKMNPDTEA 877
Query: 616 XX-----------------XXXRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQE 658
+K +Y+GGLVLEPKKG YDK+++L+DFNSLYPSIIQE
Sbjct: 878 ARPDEADPSIDDEGHHVDQGKTKKGPSYAGGLVLEPKKGLYDKYVLLLDFNSLYPSIIQE 937
Query: 659 YNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSS 718
YNICFTT+ D ++ L P + TG+LP +K LVE RR VK+ +K S
Sbjct: 938 YNICFTTVD--RSADGNVPNL----PASKT-TGVLPELLKSLVERRRMVKSWLK--TASG 988
Query: 719 DLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN-LN 777
Q+DI+Q+ALKLTANSMYGCLGF NSRF+A+PLA L+T +GREIL NT LV+N LN
Sbjct: 989 LKRQQFDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITLQGREILQNTVDLVQNNLN 1048
Query: 778 YEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVXXXXXXXXXXXX 837
EVIYGDTDS+MI ++D I ++ E NK Y+ LE+D+DG+
Sbjct: 1049 LEVIYGDTDSIMIHTGLDDISRAKGIAGKVIQEVNKKYRCLEIDLDGIYKRMLLLKKKKY 1108
Query: 838 XXXXXXXXXNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQ 897
+G + + E KG+D+VRRDWS L+ E G F ++QIL + S DD ++
Sbjct: 1109 AAIKVAL--DGSLRENIERKGLDMVRRDWSLLSKEIGDFCLNQIL-----SGGSCDDVIE 1161
Query: 898 NIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLK 957
+IH + +++ + G L ITK LTKAPE+Y D K PHVQVALRL
Sbjct: 1162 SIHSSLVQVQEQMRGGQTELEKYIITKSLTKAPEDYPDAKNQPHVQVALRLKQNGYSGCS 1221
Query: 958 QGDTISYIICEDGTSEAA-----TQRAYNIEELKNN-SKLKIDVNYYLSQQIHPVVTRLL 1011
GDT+ YIIC SE+ QRA + EELK N K ID++YYLSQQIHPVV+RL
Sbjct: 1222 AGDTVPYIICSQQDSESTHSGGIAQRARHPEELKRNPDKWMIDIDYYLSQQIHPVVSRLC 1281
Query: 1012 EPIEGTDAVRIAECLGLDTSLYRSQIKESIQQSEEN-ILGVGEAEEVKYQFCDKFEFTCM 1070
I+GT R+AECLGLD+S ++S++ ES Q + +L V + E+ +Y+ C+ +C
Sbjct: 1282 ASIQGTSPARLAECLGLDSSKFQSRLTESDNQDTSSMLLSVIDDEDERYRGCEPLRLSC- 1340
Query: 1071 NPSCKQVNTVEAP--TRL---STHGVVFVLDE----CIN-------PECK--VPPYTYLP 1112
PSC T + P + L S+ G V +E IN P C P
Sbjct: 1341 -PSCS--TTFDCPPVSSLIIGSSSGNVSNPNEGNDASINFWRRMRCPRCPDDTDESRVSP 1397
Query: 1113 HLI-NKLSQDMNKYIVKYYEGWLKCEDPGC 1141
++ N++ + + +I YY+G L C+D GC
Sbjct: 1398 AVLANQMKRQADSFINLYYKGLLMCDDEGC 1427
Score = 212 (79.7 bits), Expect = 8.1e-157, Sum P(5) = 8.1e-157
Identities = 44/116 (37%), Positives = 68/116 (58%)
Query: 450 SEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEY-LEVRYSAKCPALPSDLSGDTFS 508
SE + + + +F +++ YAF +P+ +Y L++ Y K PALP+DL G F
Sbjct: 442 SEIADKLSDFNVSNFAMTPVKRNYAFERTDLPNGEQYVLKINYPYKDPALPTDLRGQHFH 501
Query: 509 HVFGTKSSFLENLLLERKIKGPSWLEFPEAEKFPS--RISWCKYEVQCNQMEKIRI 562
+ GT +S LE LL++RKIKGPSWL + P+ R+SWCK+EV + + I +
Sbjct: 502 ALLGTNNSALELLLIKRKIKGPSWLSISKFLACPATQRVSWCKFEVTVDSPKDISV 557
Score = 139 (54.0 bits), Expect = 8.1e-157, Sum P(5) = 8.1e-157
Identities = 35/99 (35%), Positives = 51/99 (51%)
Query: 1114 LINKLSQDMNKYIVKYYEGWLKCEDPGCSDLTRRCPLGLK--TRLCTTCHKYK-----LH 1166
L N++ + + +I YY+G L C+D GC T L + + T C Y L
Sbjct: 1400 LANQMKRQADSFINLYYKGLLMCDDEGCKYSTHSVNLRVMGDSERGTICPNYPRCNGHLV 1459
Query: 1167 RVYTELQLYQQLSFFHYICDITKALTKSDTPS-IKFDSE 1204
R YTE LY+QLS+F Y+ D T+ L K D + + F+ E
Sbjct: 1460 RQYTEADLYRQLSYFCYVVDATRCLEKLDQKARLPFEKE 1498
Score = 116 (45.9 bits), Expect = 8.1e-157, Sum P(5) = 8.1e-157
Identities = 26/51 (50%), Positives = 35/51 (68%)
Query: 385 FFLDAFEDIY-KQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRS 434
+ LDA+E+ + GTVYLFGKV V + HS CCV+V+N+ R IY +P S
Sbjct: 357 YILDAYEEPFGANSGTVYLFGKVEVGKR-FHS-CCVVVKNMQRCIYAIPSS 405
Score = 66 (28.3 bits), Expect = 8.1e-157, Sum P(5) = 8.1e-157
Identities = 17/81 (20%), Positives = 39/81 (48%)
Query: 44 GGRAKRQKIDKTNKFAAFQKLKDLKGQGVKHK--YEFTADENVYEEVSEKEYTERVLKRQ 101
G R++ + + + AA ++L+ ++ G + + + +Y+ V+E++Y V +R+
Sbjct: 12 GRRSRARGSEAVARSAALERLRAIRDGGARAAAAVQVRIEAPIYDTVAEEDYAALVARRR 71
Query: 102 EXXXXXXXXXXX--YVEDGRE 120
+ Y +DGRE
Sbjct: 72 KDAGAFIVDDDGLGYADDGRE 92
>UNIPROTKB|Q0JHE4 [details] [associations]
symbol:Os01g0868300 "DNA polymerase" species:39947 "Oryza
sativa Japonica Group" [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IBA] [GO:0005634 "nucleus" evidence=IBA]
[GO:0005658 "alpha DNA polymerase:primase complex" evidence=IBA]
[GO:0006260 "DNA replication" evidence=IBA] [GO:0006303
"double-strand break repair via nonhomologous end joining"
evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IBA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 GO:GO:0001882
SUPFAM:SSF53098 EMBL:AP008207 GO:GO:0008408 GO:GO:0006303
GO:GO:0003887 KO:K02320 GO:GO:0019985 Gene3D:3.90.1600.10
InterPro:IPR023211 GO:GO:0005658 TIGRFAMs:TIGR00592
RefSeq:NP_001044920.1 UniGene:Os.47313 STRING:Q0JHE4 GeneID:4325052
KEGG:osa:4325052 Gramene:Q0JHE4 ProtClustDB:CLSN2686901
Uniprot:Q0JHE4
Length = 1244
Score = 1071 (382.1 bits), Expect = 9.7e-153, Sum P(4) = 9.7e-153
Identities = 261/630 (41%), Positives = 359/630 (56%)
Query: 561 RITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDK-----QYXXXXXXXXXXXXX 615
++TN+ GN+ +TL G R++R E+LLLHAFH + +++PDK ++
Sbjct: 528 QLTNISGNLWGKTLQGSRAQRVEYLLLHAFHARKFIVPDKFARSKEFNSTKRKMNPDTEA 587
Query: 616 XX-----------------XXXRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQE 658
+K +Y+GGLVLEPKKG YDK+++L+DFNSLYPSIIQE
Sbjct: 588 ARPDEADPSIDDEGHHVDQGKTKKGPSYAGGLVLEPKKGLYDKYVLLLDFNSLYPSIIQE 647
Query: 659 YNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSS 718
YNICFTT+ D ++ L P + TG+LP +K LVE RR VK+ +K S
Sbjct: 648 YNICFTTVD--RSADGNVPNL----PASKT-TGVLPELLKSLVERRRMVKSWLK--TASG 698
Query: 719 DLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN-LN 777
Q+DI+Q+ALKLTANSMYGCLGF NSRF+A+PLA L+T +GREIL NT LV+N LN
Sbjct: 699 LKRQQFDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITLQGREILQNTVDLVQNNLN 758
Query: 778 YEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVXXXXXXXXXXXX 837
EVIYGDTDS+MI ++D I ++ E NK Y+ LE+D+DG+
Sbjct: 759 LEVIYGDTDSIMIHTGLDDISRAKGIAGKVIQEVNKKYRCLEIDLDGIYKRMLLLKKKKY 818
Query: 838 XXXXXXXXXNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQ 897
+G + + E KG+D+VRRDWS L+ E G F ++QIL + S DD ++
Sbjct: 819 AAIKVAL--DGSLRENIERKGLDMVRRDWSLLSKEIGDFCLNQIL-----SGGSCDDVIE 871
Query: 898 NIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLK 957
+IH + +++ + G L ITK LTKAPE+Y D K PHVQVALRL
Sbjct: 872 SIHSSLVQVQEQMRGGQTELEKYIITKSLTKAPEDYPDAKNQPHVQVALRLKQNGYSGCS 931
Query: 958 QGDTISYIICEDGTSEAA-----TQRAYNIEELKNN-SKLKIDVNYYLSQQIHPVVTRLL 1011
GDT+ YIIC SE+ QRA + EELK N K ID++YYLSQQIHPVV+RL
Sbjct: 932 AGDTVPYIICSQQDSESTHSGGIAQRARHPEELKRNPDKWMIDIDYYLSQQIHPVVSRLC 991
Query: 1012 EPIEGTDAVRIAECLGLDTSLYRSQIKESIQQSEEN-ILGVGEAEEVKYQFCDKFEFTCM 1070
I+GT R+AECLGLD+S ++S++ ES Q + +L V + E+ +Y+ C+ +C
Sbjct: 992 ASIQGTSPARLAECLGLDSSKFQSRLTESDNQDTSSMLLSVIDDEDERYRGCEPLRLSC- 1050
Query: 1071 NPSCKQVNTVEAP--TRL---STHGVVFVLDE----CIN-------PECK--VPPYTYLP 1112
PSC T + P + L S+ G V +E IN P C P
Sbjct: 1051 -PSCS--TTFDCPPVSSLIIGSSSGNVSNPNEGNDASINFWRRMRCPRCPDDTDESRVSP 1107
Query: 1113 HLI-NKLSQDMNKYIVKYYEGWLKCEDPGC 1141
++ N++ + + +I YY+G L C+D GC
Sbjct: 1108 AVLANQMKRQADSFINLYYKGLLMCDDEGC 1137
Score = 212 (79.7 bits), Expect = 9.7e-153, Sum P(4) = 9.7e-153
Identities = 44/116 (37%), Positives = 68/116 (58%)
Query: 450 SEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEY-LEVRYSAKCPALPSDLSGDTFS 508
SE + + + +F +++ YAF +P+ +Y L++ Y K PALP+DL G F
Sbjct: 152 SEIADKLSDFNVSNFAMTPVKRNYAFERTDLPNGEQYVLKINYPYKDPALPTDLRGQHFH 211
Query: 509 HVFGTKSSFLENLLLERKIKGPSWLEFPEAEKFPS--RISWCKYEVQCNQMEKIRI 562
+ GT +S LE LL++RKIKGPSWL + P+ R+SWCK+EV + + I +
Sbjct: 212 ALLGTNNSALELLLIKRKIKGPSWLSISKFLACPATQRVSWCKFEVTVDSPKDISV 267
Score = 139 (54.0 bits), Expect = 9.7e-153, Sum P(4) = 9.7e-153
Identities = 35/99 (35%), Positives = 51/99 (51%)
Query: 1114 LINKLSQDMNKYIVKYYEGWLKCEDPGCSDLTRRCPLGLK--TRLCTTCHKYK-----LH 1166
L N++ + + +I YY+G L C+D GC T L + + T C Y L
Sbjct: 1110 LANQMKRQADSFINLYYKGLLMCDDEGCKYSTHSVNLRVMGDSERGTICPNYPRCNGHLV 1169
Query: 1167 RVYTELQLYQQLSFFHYICDITKALTKSDTPS-IKFDSE 1204
R YTE LY+QLS+F Y+ D T+ L K D + + F+ E
Sbjct: 1170 RQYTEADLYRQLSYFCYVVDATRCLEKLDQKARLPFEKE 1208
Score = 116 (45.9 bits), Expect = 9.7e-153, Sum P(4) = 9.7e-153
Identities = 26/51 (50%), Positives = 35/51 (68%)
Query: 385 FFLDAFEDIY-KQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRS 434
+ LDA+E+ + GTVYLFGKV V + HS CCV+V+N+ R IY +P S
Sbjct: 67 YILDAYEEPFGANSGTVYLFGKVEVGKR-FHS-CCVVVKNMQRCIYAIPSS 115
>ASPGD|ASPL0000000737 [details] [associations]
symbol:AN10755 species:162425 "Emericella nidulans"
[GO:0033314 "mitotic DNA replication checkpoint" evidence=IEA]
[GO:0006269 "DNA replication, synthesis of RNA primer"
evidence=IEA] [GO:0006270 "DNA replication initiation"
evidence=IEA] [GO:0000734 "gene conversion at mating-type locus,
DNA repair synthesis" evidence=IEA] [GO:0000723 "telomere
maintenance" evidence=IEA] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0003688 "DNA replication origin
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0001882 "nucleoside binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR015088
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 Pfam:PF08996
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 EMBL:BN001301 GO:GO:0001882
SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 OMA:GSGTDME InterPro:IPR024647 Pfam:PF12254
TIGRFAMs:TIGR00592 EnsemblFungi:CADANIAT00007097 Uniprot:C8V3I8
Length = 1459
Score = 1045 (372.9 bits), Expect = 2.7e-151, Sum P(4) = 2.7e-151
Identities = 247/667 (37%), Positives = 368/667 (55%)
Query: 551 EVQCNQMEKIRITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDK---QYXXXXX 607
++Q + K+ +TN+ GN +RTL G R+ERNE++LLH F++ Y+ PDK +
Sbjct: 763 KLQMLSLTKV-LTNIAGNSWARTLSGTRAERNEYILLHEFYKNKYICPDKYSSKLQKAEE 821
Query: 608 XXXXXXXXXXXXXRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP 667
+KK Y GGLV EP++G YD+++++MDFNSLYPSIIQEYNICFTT+
Sbjct: 822 IAQEGDEDDATDKKKKDKYKGGLVFEPERGLYDRYVLVMDFNSLYPSIIQEYNICFTTVD 881
Query: 668 VRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIR 727
+++ +P + GILP I LV RR+VK LMK + + L +D +
Sbjct: 882 RTSSAENENDEKVPEVPASDAEQGILPRLIATLVGRRREVKKLMKDKRATPEQLALWDTK 941
Query: 728 QKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDS 787
Q A KLTANSMYGCLG+ SRF+A+PLA L T KGREIL +TK LVE+ VIYGDTDS
Sbjct: 942 QLAFKLTANSMYGCLGYTQSRFYARPLAMLTTFKGREILRSTKELVESKQLRVIYGDTDS 1001
Query: 788 LMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVXXXXXXXXXXXXXXXXXXXXXN 847
+MI+ N++ K+G ++K+ N+ YK LE+DID V +
Sbjct: 1002 VMINTNMDTISDALKVGEELKTAVNERYKLLEIDIDNVFRRLLLHAKKKYAAINMTEV-D 1060
Query: 848 GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIR 907
GK + E+KG+D+ RR++ L+ EA + ++++IL S D L L +H++++++
Sbjct: 1061 GKYVDKLEVKGLDMKRREYCALSKEASQRLLNEIL---SGDDQELV--LNRVHDYLRELA 1115
Query: 908 TDLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQGDTISYIIC 967
++ +P+ I +L+K PEEY +++ +P QVALR K ++ D ISYI+
Sbjct: 1116 GNMREYTIPVQKYVIYTKLSKRPEEYPNKETMPPAQVALR-ELARGKTVRPNDVISYIVT 1174
Query: 968 EDGTSEAAT----QRAYNIEE-LKNNSKLKIDVNYYLSQQIHPVVTRLLEPIEGTDAVRI 1022
G SE ++ +R+Y +++ +K +S+LK D+ +YL +QI P + RL PI GTDAVR+
Sbjct: 1175 S-GDSETSSLPPAKRSYTLQDVIKPDSRLKPDIEFYLLKQIFPPIERLCAPIPGTDAVRL 1233
Query: 1023 AECLGLDTSLYR--SQIKESIQQSEENILGVGEAEEVKYQFCDKFEFTCMNPSCKQVNTV 1080
AECLGLD Y+ + S Q +E L + V+++ + TC CK+ +
Sbjct: 1234 AECLGLDVRKYQINTTTTNSTQNTEIFPLESQIPDSVRFESAARLTLTCRR--CKERSVF 1291
Query: 1081 EAPTRLSTHGVVFVLDECINPECKVPPYTYLPHLINKLSQDMNKYIVKYYEGWLKCEDPG 1140
E S H C N C P T +I +L + KYYEGWL C++
Sbjct: 1292 EG-LAASIHMCKPTGLFCPNSSCGNPISTLT--IIAQLESQIRAQTSKYYEGWLVCDEST 1348
Query: 1141 CSDLTR-------RC--PLGLKTRLCTTCHKYKLHRVYTELQLYQQLSFFHYICDITKAL 1191
C + TR RC P G + C Y+ Y+E Q+Y QL +F + D+ KA
Sbjct: 1349 CGNRTRQISVYGHRCLGPRG-QAEGCLGRMAYE----YSEKQMYNQLLYFASLWDVDKAR 1403
Query: 1192 TKSDTPS 1198
++ S
Sbjct: 1404 AAAEKES 1410
Score = 339 (124.4 bits), Expect = 2.7e-151, Sum P(4) = 2.7e-151
Identities = 74/179 (41%), Positives = 108/179 (60%)
Query: 383 RMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLK---- 438
R F+LD + ++ G++ LFGKV K+N S++S V V +I RK+Y LPR K
Sbjct: 343 RFFWLD-YTEVN---GSLCLFGKVKNKQNGSYASAFVKVDSILRKLYFLPREYRHKGGRE 398
Query: 439 TKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPAL 498
T E V + VY E DQ+ ++ ++ K + +KYAF +PG+P +EYL++ Y PAL
Sbjct: 399 TDEEVDMEDVYHEVDQMMSRLRVGMHKIKACTRKYAFEMPGIPKEAEYLKLLYPYDKPAL 458
Query: 499 PSDLSGDTFSHVFGTKSSFLENLLLERKIKGPSWLEFPEAE-KFPSRISWCKYEVQCNQ 556
P D G+TFSHVFGT +S E +L + I GP WL+ EA+ + SWCK+E Q ++
Sbjct: 459 PMDTKGETFSHVFGTNTSLFEQFVLWKNIMGPCWLKIEEADFSAVNNASWCKFECQTSK 517
Score = 92 (37.4 bits), Expect = 2.7e-151, Sum P(4) = 2.7e-151
Identities = 40/160 (25%), Positives = 63/160 (39%)
Query: 59 AAFQKLKDLKGQGVKH--KYEFTADENVYEEVSEKEYTERVLKR-QEXXXXXXXXXXXYV 115
A +L+ L+ G K YE ++YEEV + Y + + R E Y
Sbjct: 6 AKLAELRALRAAGKKRLSTYEVEEQGDIYEEVDDDGYKKIIRNRLDEDDFVVDDNGEGYA 65
Query: 116 EDGREIFDD---------DIEDVPQXXXXXXXXXXXXNIQNPNAKGDIQKLLAN-MPVKK 165
+DGRE++++ D +D+P + I K ++
Sbjct: 66 DDGREVWNEQTGQYSDESDDDDLPARGKAAKRKREEEKQRKEKINNGISKYFSSGAAAPT 125
Query: 166 KKKEEVQLNNDDV-LADLLSEV-NTTIAPTL-KLNTKTNE 202
K + V DD LADLL EV N ++ T+ K N +E
Sbjct: 126 PKPKPVATAEDDAFLADLLGEVDNNVVSNTVPKHNVVKSE 165
Score = 52 (23.4 bits), Expect = 2.7e-151, Sum P(4) = 2.7e-151
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 242 PLKDEIKSNDSVMEVEMNVAEQSKEEPVDD--GLWEQMQIDDWDNSQ 286
P+ D + S+ VE A KEEP DD + E +Q D ++
Sbjct: 221 PMSDTMPSSPVTKAVERKSAVLIKEEPEDDDDNMMEVVQATGHDEAK 267
>UNIPROTKB|Q7SBT9 [details] [associations]
symbol:NCU07870 "DNA polymerase" species:367110 "Neurospora
crassa OR74A" [GO:0000734 "gene conversion at mating-type locus,
DNA repair synthesis" evidence=IBA] [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IBA] [GO:0005634 "nucleus"
evidence=IBA] [GO:0005658 "alpha DNA polymerase:primase complex"
evidence=IBA] [GO:0006260 "DNA replication" evidence=IBA]
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IBA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 GO:GO:0001882
SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0006303 GO:GO:0003887 KO:K02320
eggNOG:COG0417 GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0005658 HOGENOM:HOG000163524 OrthoDB:EOG4K0TWK GO:GO:0000734
InterPro:IPR024647 Pfam:PF12254 TIGRFAMs:TIGR00592 OMA:CASIQGT
EMBL:AABX02000040 RefSeq:XP_963131.2 STRING:Q7SBT9
EnsemblFungi:EFNCRT00000007540 GeneID:3879279 KEGG:ncr:NCU07870
Uniprot:Q7SBT9
Length = 1479
Score = 1080 (385.2 bits), Expect = 6.2e-148, Sum P(3) = 6.2e-148
Identities = 271/699 (38%), Positives = 379/699 (54%)
Query: 562 ITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYXXXXXXXXXXXXXXXXXX- 620
+TN+ GN +RTL G R+ERNE++LLH FH YV+PDKQ
Sbjct: 784 LTNLAGNSWARTLTGTRAERNEYILLHEFHRNKYVVPDKQTFKGRQRIEEENAEEEGGEG 843
Query: 621 -RKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTL 679
+KK Y GGLV EP+KG YDKF+++MDFNSLYPSIIQEYNICFTT+ L + D +
Sbjct: 844 GKKKDKYKGGLVFEPEKGLYDKFVLVMDFNSLYPSIIQEYNICFTTVDRTSLSEDD-DAV 902
Query: 680 CEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMY 739
E +P+ Q GILP I LV RRQVK+LMK N + + L +DI+Q ALKLTANSMY
Sbjct: 903 PE-VPKEQAQ-GILPKLIATLVSRRRQVKSLMKDKNATPEELATWDIKQLALKLTANSMY 960
Query: 740 GCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDS 799
GCLG+ SRF+A+PLA L T KGREIL +TK L E+ + +VIYGDTDS+MI+ N ++
Sbjct: 961 GCLGYTKSRFYARPLAVLTTYKGREILRSTKELAESNSLQVIYGDTDSVMINANKDNVAE 1020
Query: 800 VFKIGNQIKSECNKLYKQLELDIDGVXXXXXXXXXXXXXXXXXXXXXNGKMICSQEIKGV 859
++G++ K N+ Y+ LE+DID V NGK + E+KG+
Sbjct: 1021 ALRVGHEFKKAVNERYRLLEIDIDNVFRRILLQAKKKYAAINMVEV-NGKWVEKMEVKGL 1079
Query: 860 DVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTL 919
D+ RR++ L+ E ++++IL T+ S+ Q IHE+++ I + G VP+
Sbjct: 1080 DMKRREYCGLSKEISNRILTEILSGDD-TEVSV----QRIHEYLRDISAKMREGAVPVQK 1134
Query: 920 LEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQGDTISYIICEDG--TSEAATQ 977
I+ QL KAP++Y + ++P VQVALR K +++GD ISYII D TSEA +
Sbjct: 1135 YIISTQLGKAPKDYPNADSMPQVQVALR-ELAKGKTIRKGDVISYIITGDSKTTSEAVAK 1193
Query: 978 RAYNIEE-LKNNSKLKIDVNYYLSQQIHPVVTRLLEPIEGTDAVRIAECLGLDTSLYRSQ 1036
RAY ++ LK S L DV +Y+ +QI P V RL I GT ++AE LGLD Y S
Sbjct: 1194 RAYTPQDVLKAESGLSPDVEWYIGKQIFPPVERLCANIVGTSTSQLAENLGLDVRRYSSN 1253
Query: 1037 IKESI---QQSEENILGVGEAEEVKYQFCDKFEFTCMNPSCKQVNTVEA-PTRLSTHGVV 1092
+ Q E + L + +++Q C + C CK + E + S + V
Sbjct: 1254 TNNNSSGPQDLEIHPLESQIPDSLRFQSCARLSLRCRK--CKTSHPFEGLASPSSVNNVT 1311
Query: 1093 FVLDECINPECKVPPYTYLPHL--INKLSQDMNKYIVKYYEGWLKCEDPGCSDLTR---- 1146
+C P C+ Y LP L + ++ + +YYEGWL C+D C + TR
Sbjct: 1312 PSGIQC--PSCQ---YV-LPMLSVVAQVEAAVRAQTARYYEGWLVCDDSSCGNRTRQISV 1365
Query: 1147 ---RCPLGLKTRLCTTCHKYKLHRVYTELQLYQQLSFFHYICDITKALTKS------DTP 1197
RC LG K C ++ YTE +Y QL +F + D+ KA +K+ D
Sbjct: 1366 YGTRC-LGSKGLARGECGG-RMRYEYTERDIYNQLVYFASLWDVDKAKSKAKENNDEDVD 1423
Query: 1198 SIKFDSETYMGYCKMKQHVERFLESSAYNIVDLKKLFSC 1236
+ K +E M +H R + +V+ K L C
Sbjct: 1424 AAKLSAEEKERVAIMAEH-NRVRFGTVKGVVE-KYLDKC 1460
Score = 303 (111.7 bits), Expect = 6.2e-148, Sum P(3) = 6.2e-148
Identities = 85/278 (30%), Positives = 134/278 (48%)
Query: 283 DNSQQTQDVLPEQAKVXXXXXXXXXXXXXXKVD-VTNVESVSSAVELSTSPPPQVVEKKE 341
D+ + +D++ E A ++ + E V ++ + +P P+V
Sbjct: 257 DDEDEDEDMM-EVAHTGAVTAASVNISASRQIKKILKTEPVPASSSPARAPAPEV----- 310
Query: 342 HKCAEWEAIQTEPST-SEPQVHSRTADDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTV 400
A W I + + S Q R+ + E MF+ D + ++ G++
Sbjct: 311 -DAASWNEINQKLNVVSMSQSEGRSVG-KIDYKDAIEEDGSLNMFWTD-YTEVN---GSL 364
Query: 401 YLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLK----TKEPVSIAQVYSEFDQIA 456
LFGKV K+ ++ SC V V NI RK++ LPR ++ T E V + VY+E D+I
Sbjct: 365 CLFGKVLNKKTKTYVSCFVKVDNILRKLFFLPRKYRVRGGEETTEEVEMMDVYNEVDEIM 424
Query: 457 TQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKSS 516
T+ + K + +KYAF LP VP S+YL++ Y PA+ G+TFSHVFGT ++
Sbjct: 425 TKMNVGMHKIKACTRKYAFELPDVPKESQYLKLLYPYTKPAMEPTHKGETFSHVFGTNTA 484
Query: 517 FLENLLLERKIKGPSWLEFPEAEKFPS--RISWCKYEV 552
E +L + I GP WL+ +A+ F S S CK EV
Sbjct: 485 LFEQFVLWKNIMGPCWLKIEDAD-FTSLRNASHCKLEV 521
Score = 98 (39.6 bits), Expect = 6.2e-148, Sum P(3) = 6.2e-148
Identities = 42/169 (24%), Positives = 71/169 (42%)
Query: 50 QKIDKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKR-QEXXXXXX 108
+++ K +K+A +L++L+ G K Y+ + +YEEV E +Y + V R E
Sbjct: 3 RRVAKRDKYA---ELRELRQSGKKKTYDVGEIDELYEEVDENQYKKIVRDRLNEDDFVVD 59
Query: 109 XXXXXYVEDGREIFD------DDIED---VPQXXXXXXXXXXXXNIQNPNAKG-DIQKLL 158
Y +DGRE +D D E+ +P +A DI +
Sbjct: 60 DNGEGYADDGREEWDRLPQYHSDSEEELGLPGSKPRKSKKQKEHEDAKRDANDRDITEYF 119
Query: 159 ANMPVKKKKKEEVQLNNDD--VLADLLSEVNTTI-APTLKLNTKTNEIV 204
VK K++V +D L DL+ +V I P +++ K + V
Sbjct: 120 TKGAVKAPPKQKVIKTEEDEKFLDDLIDQVTAQIPVPVTRVSKKRDRSV 168
>UNIPROTKB|Q5B0J8 [details] [associations]
symbol:AN5932.2 "DNA polymerase" species:227321
"Aspergillus nidulans FGSC A4" [GO:0000734 "gene conversion at
mating-type locus, DNA repair synthesis" evidence=IBA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IBA] [GO:0005634
"nucleus" evidence=IBA] [GO:0005658 "alpha DNA polymerase:primase
complex" evidence=IBA] [GO:0006260 "DNA replication" evidence=IBA]
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IBA] InterPro:IPR004399 InterPro:IPR004578
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR015088 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 Pfam:PF08996 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 GO:GO:0001882 SUPFAM:SSF53098 EMBL:AACD01000101
GO:GO:0009228 GO:GO:0008408 GO:GO:0006303 InterPro:IPR013749
Pfam:PF08543 GO:GO:0003887 KO:K02320 eggNOG:COG0417 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
HOGENOM:HOG000163524 OrthoDB:EOG4K0TWK GO:GO:0000734
InterPro:IPR024647 Pfam:PF12254 TIGRFAMs:TIGR00592
Gene3D:1.20.910.10 InterPro:IPR016084 SUPFAM:SSF48613
InterPro:IPR004305 Pfam:PF03070 GO:GO:0008972 TIGRFAMs:TIGR00097
RefSeq:XP_663536.1 ProteinModelPortal:Q5B0J8 STRING:Q5B0J8
GeneID:2871177 KEGG:ani:AN5932.2 Uniprot:Q5B0J8
Length = 2019
Score = 1045 (372.9 bits), Expect = 1.1e-146, Sum P(4) = 1.1e-146
Identities = 247/667 (37%), Positives = 368/667 (55%)
Query: 551 EVQCNQMEKIRITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDK---QYXXXXX 607
++Q + K+ +TN+ GN +RTL G R+ERNE++LLH F++ Y+ PDK +
Sbjct: 763 KLQMLSLTKV-LTNIAGNSWARTLSGTRAERNEYILLHEFYKNKYICPDKYSSKLQKAEE 821
Query: 608 XXXXXXXXXXXXXRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP 667
+KK Y GGLV EP++G YD+++++MDFNSLYPSIIQEYNICFTT+
Sbjct: 822 IAQEGDEDDATDKKKKDKYKGGLVFEPERGLYDRYVLVMDFNSLYPSIIQEYNICFTTVD 881
Query: 668 VRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIR 727
+++ +P + GILP I LV RR+VK LMK + + L +D +
Sbjct: 882 RTSSAENENDEKVPEVPASDAEQGILPRLIATLVGRRREVKKLMKDKRATPEQLALWDTK 941
Query: 728 QKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDS 787
Q A KLTANSMYGCLG+ SRF+A+PLA L T KGREIL +TK LVE+ VIYGDTDS
Sbjct: 942 QLAFKLTANSMYGCLGYTQSRFYARPLAMLTTFKGREILRSTKELVESKQLRVIYGDTDS 1001
Query: 788 LMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVXXXXXXXXXXXXXXXXXXXXXN 847
+MI+ N++ K+G ++K+ N+ YK LE+DID V +
Sbjct: 1002 VMINTNMDTISDALKVGEELKTAVNERYKLLEIDIDNVFRRLLLHAKKKYAAINMTEV-D 1060
Query: 848 GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIR 907
GK + E+KG+D+ RR++ L+ EA + ++++IL S D L L +H++++++
Sbjct: 1061 GKYVDKLEVKGLDMKRREYCALSKEASQRLLNEIL---SGDDQELV--LNRVHDYLRELA 1115
Query: 908 TDLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQGDTISYIIC 967
++ +P+ I +L+K PEEY +++ +P QVALR K ++ D ISYI+
Sbjct: 1116 GNMREYTIPVQKYVIYTKLSKRPEEYPNKETMPPAQVALR-ELARGKTVRPNDVISYIVT 1174
Query: 968 EDGTSEAAT----QRAYNIEE-LKNNSKLKIDVNYYLSQQIHPVVTRLLEPIEGTDAVRI 1022
G SE ++ +R+Y +++ +K +S+LK D+ +YL +QI P + RL PI GTDAVR+
Sbjct: 1175 S-GDSETSSLPPAKRSYTLQDVIKPDSRLKPDIEFYLLKQIFPPIERLCAPIPGTDAVRL 1233
Query: 1023 AECLGLDTSLYR--SQIKESIQQSEENILGVGEAEEVKYQFCDKFEFTCMNPSCKQVNTV 1080
AECLGLD Y+ + S Q +E L + V+++ + TC CK+ +
Sbjct: 1234 AECLGLDVRKYQINTTTTNSTQNTEIFPLESQIPDSVRFESAARLTLTCRR--CKERSVF 1291
Query: 1081 EAPTRLSTHGVVFVLDECINPECKVPPYTYLPHLINKLSQDMNKYIVKYYEGWLKCEDPG 1140
E S H C N C P T +I +L + KYYEGWL C++
Sbjct: 1292 EG-LAASIHMCKPTGLFCPNSSCGNPISTLT--IIAQLESQIRAQTSKYYEGWLVCDEST 1348
Query: 1141 CSDLTR-------RC--PLGLKTRLCTTCHKYKLHRVYTELQLYQQLSFFHYICDITKAL 1191
C + TR RC P G + C Y+ Y+E Q+Y QL +F + D+ KA
Sbjct: 1349 CGNRTRQISVYGHRCLGPRG-QAEGCLGRMAYE----YSEKQMYNQLLYFASLWDVDKAR 1403
Query: 1192 TKSDTPS 1198
++ S
Sbjct: 1404 AAAEKES 1410
Score = 339 (124.4 bits), Expect = 1.1e-146, Sum P(4) = 1.1e-146
Identities = 74/179 (41%), Positives = 108/179 (60%)
Query: 383 RMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLK---- 438
R F+LD + ++ G++ LFGKV K+N S++S V V +I RK+Y LPR K
Sbjct: 343 RFFWLD-YTEVN---GSLCLFGKVKNKQNGSYASAFVKVDSILRKLYFLPREYRHKGGRE 398
Query: 439 TKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPAL 498
T E V + VY E DQ+ ++ ++ K + +KYAF +PG+P +EYL++ Y PAL
Sbjct: 399 TDEEVDMEDVYHEVDQMMSRLRVGMHKIKACTRKYAFEMPGIPKEAEYLKLLYPYDKPAL 458
Query: 499 PSDLSGDTFSHVFGTKSSFLENLLLERKIKGPSWLEFPEAE-KFPSRISWCKYEVQCNQ 556
P D G+TFSHVFGT +S E +L + I GP WL+ EA+ + SWCK+E Q ++
Sbjct: 459 PMDTKGETFSHVFGTNTSLFEQFVLWKNIMGPCWLKIEEADFSAVNNASWCKFECQTSK 517
Score = 92 (37.4 bits), Expect = 1.1e-146, Sum P(4) = 1.1e-146
Identities = 40/160 (25%), Positives = 63/160 (39%)
Query: 59 AAFQKLKDLKGQGVKH--KYEFTADENVYEEVSEKEYTERVLKR-QEXXXXXXXXXXXYV 115
A +L+ L+ G K YE ++YEEV + Y + + R E Y
Sbjct: 6 AKLAELRALRAAGKKRLSTYEVEEQGDIYEEVDDDGYKKIIRNRLDEDDFVVDDNGEGYA 65
Query: 116 EDGREIFDD---------DIEDVPQXXXXXXXXXXXXNIQNPNAKGDIQKLLAN-MPVKK 165
+DGRE++++ D +D+P + I K ++
Sbjct: 66 DDGREVWNEQTGQYSDESDDDDLPARGKAAKRKREEEKQRKEKINNGISKYFSSGAAAPT 125
Query: 166 KKKEEVQLNNDDV-LADLLSEV-NTTIAPTL-KLNTKTNE 202
K + V DD LADLL EV N ++ T+ K N +E
Sbjct: 126 PKPKPVATAEDDAFLADLLGEVDNNVVSNTVPKHNVVKSE 165
Score = 52 (23.4 bits), Expect = 1.1e-146, Sum P(4) = 1.1e-146
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 242 PLKDEIKSNDSVMEVEMNVAEQSKEEPVDD--GLWEQMQIDDWDNSQ 286
P+ D + S+ VE A KEEP DD + E +Q D ++
Sbjct: 221 PMSDTMPSSPVTKAVERKSAVLIKEEPEDDDDNMMEVVQATGHDEAK 267
Score = 39 (18.8 bits), Expect = 6.5e-29, Sum P(4) = 6.5e-29
Identities = 8/33 (24%), Positives = 17/33 (51%)
Query: 1033 YRSQIKESIQQSEENILGVGEAEEVKYQFCDKF 1065
Y+++ ESI S + +L + + + +C F
Sbjct: 1835 YKAKDMESIAASAKIVLHIQQETALHIDYCASF 1867
>POMBASE|SPAC3H5.06c [details] [associations]
symbol:pol1 "DNA polymerase alpha catalytic subunit"
species:4896 "Schizosaccharomyces pombe" [GO:0000723 "telomere
maintenance" evidence=IMP] [GO:0000734 "gene conversion at
mating-type locus, DNA repair synthesis" evidence=IMP] [GO:0000790
"nuclear chromatin" evidence=IDA] [GO:0001882 "nucleoside binding"
evidence=IEA] [GO:0003688 "DNA replication origin binding"
evidence=IDA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IGI] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IGI] [GO:0006269 "DNA
replication, synthesis of RNA primer" evidence=IGI] [GO:0006270
"DNA replication initiation" evidence=IMP] [GO:0033314 "mitotic DNA
replication checkpoint" evidence=IMP] [GO:0043596 "nuclear
replication fork" evidence=IGI] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
PomBase:SPAC3H5.06c EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0046872 GO:GO:0051539 GO:GO:0003688
GO:GO:0000790 GO:GO:0006270 GO:GO:0001882 SUPFAM:SSF53098
GO:GO:0000723 GO:GO:0033314 GO:GO:0003887 KO:K02320 GO:GO:0006269
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658 EMBL:X58299
EMBL:X69673 EMBL:AB027936 PIR:S15993 RefSeq:NP_594186.1
ProteinModelPortal:P28040 IntAct:P28040 STRING:P28040
EnsemblFungi:SPAC3H5.06c.1 GeneID:2543629 KEGG:spo:SPAC3H5.06c
HOGENOM:HOG000163524 OMA:GSGTDME OrthoDB:EOG4K0TWK NextBio:20804635
GO:GO:0000734 InterPro:IPR024647 Pfam:PF12254 TIGRFAMs:TIGR00592
Uniprot:P28040
Length = 1405
Score = 975 (348.3 bits), Expect = 7.6e-139, Sum P(3) = 7.6e-139
Identities = 211/496 (42%), Positives = 291/496 (58%)
Query: 550 YEVQCNQMEKIRITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYXXXXXXX 609
+++Q Q+ K +TN+ GN +RTL G R+ERNE++LLH F + Y++PDKQ
Sbjct: 747 FKIQMLQLSK-NLTNIAGNSWARTLTGTRAERNEYILLHEFKKNGYIVPDKQQSIRRHAE 805
Query: 610 XXXXXXXX---XXXRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI 666
+KK Y GGLV EP+KG Y+ I++MDFNSLYPSIIQEYNICFTT+
Sbjct: 806 AFGAEDGLQEESLGKKKDKYKGGLVFEPQKGLYETCILVMDFNSLYPSIIQEYNICFTTV 865
Query: 667 PVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDI 726
R +SD P + GI P I LVE RRQ+K L+K + + +Q+DI
Sbjct: 866 D-RSPSNSDSDDQIPDTPSASANQGIFPRLIANLVERRRQIKGLLKDNSATPTQRLQWDI 924
Query: 727 RQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTD 786
+Q+ALKLTANSMYGCLG+ SRF+A+PLA L+T KGRE L+NTK L + + +VIYGDTD
Sbjct: 925 QQQALKLTANSMYGCLGYTKSRFYARPLAVLITYKGREALMNTKELADQMGLQVIYGDTD 984
Query: 787 SLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVXXXXXXXXXXXXXXXXXXXXX 846
S+M++ NV D + +IGN+ K + N+ Y +LE+DID V
Sbjct: 985 SVMLNTNVTDKNHALRIGNEFKEKVNERYSKLEIDIDNVYQRMLLHAKKKYAALQLDS-- 1042
Query: 847 NGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKI 906
GK + ++KG+D+ RR++ LA EA KF + QIL + + ++NIH ++
Sbjct: 1043 QGKP--NLDVKGLDMKRREFCTLAKEASKFCLDQILSGEL-----TETVIENIHSYLMDF 1095
Query: 907 RTDLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQGDTISYII 966
+ NG P I +L K PE+Y + K +P VQVAL+ + ++ GD I +II
Sbjct: 1096 SEKMRNGKFPANKFIIFNRLGKNPEDYPNGKTMPFVQVALK-KKARGENVRVGDVIPFII 1154
Query: 967 CEDGTSEAATQRAYNIEELKN-NSKLKIDVNYYLSQQIHPVVTRLLEPIEGTDAVRIAEC 1025
RAY+ +E+ N NS L ID NYYLS QI P + R++ PIEGT+ R+AEC
Sbjct: 1155 AGSDADGHPADRAYSPQEIMNTNSTLVIDYNYYLSHQILPPIERVIAPIEGTNRARLAEC 1214
Query: 1026 LGLDTSLYRS-QIKES 1040
LGLD Y S + ES
Sbjct: 1215 LGLDARKYYSHETSES 1230
Score = 403 (146.9 bits), Expect = 2.0e-67, Sum P(3) = 2.0e-67
Identities = 117/384 (30%), Positives = 181/384 (47%)
Query: 855 EIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGF 914
++KG+D+ RR++ LA EA KF + QIL + + ++NIH ++ + NG
Sbjct: 1049 DVKGLDMKRREFCTLAKEASKFCLDQILSGEL-----TETVIENIHSYLMDFSEKMRNGK 1103
Query: 915 VPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQGDTISYIICEDGTSEA 974
P I +L K PE+Y + K +P VQVAL+ + ++ GD I +II
Sbjct: 1104 FPANKFIIFNRLGKNPEDYPNGKTMPFVQVALK-KKARGENVRVGDVIPFIIAGSDADGH 1162
Query: 975 ATQRAYNIEELKN-NSKLKIDVNYYLSQQIHPVVTRLLEPIEGTDAVRIAECLGLDTSLY 1033
RAY+ +E+ N NS L ID NYYLS QI P + R++ PIEGT+ R+AECLGLD Y
Sbjct: 1163 PADRAYSPQEIMNTNSTLVIDYNYYLSHQILPPIERVIAPIEGTNRARLAECLGLDARKY 1222
Query: 1034 RSQIKESIQQSEENILGVGEAEEVKYQ-FCDKFEFTCMNPSCKQVNTVEAPTRLSTHGVV 1092
S + SE + E+ Q F + PSC + + +
Sbjct: 1223 YSH-----ETSESSAFQRYESTLTDDQCFINVSPLLLKCPSCNATSFSLRSVKSLKETLY 1277
Query: 1093 FVLDECINPECKVPPYTYLPH-LINKLSQDMNKYIVKYYEGWLKCEDPGCSDLTRRCPLG 1151
EC +C Y Y +I + S + +I YYEG L C+D C + TR+ +
Sbjct: 1278 ANTVEC---DCG---YEYSDFTIILQFSSQLRDFINLYYEGILVCDDSSCGNRTRQMSVY 1331
Query: 1152 LKTRLCTTCHKYKLHRVYTELQLYQQLSFFHYICDITKALTKSDTPSIKFDSETYMGYCK 1211
K R C + +H Y + QLY Q+ F T T++ I+ ++
Sbjct: 1332 GK-RCCNKSCRGSVHFEYNDEQLYNQIKFLLKAVQTTTGATRNGI--IRCNA-------- 1380
Query: 1212 MKQHVERFLESSAYNIVDLKKLFS 1235
+ +++ R + +A VD+ +FS
Sbjct: 1381 INKNISRIMNKNAREFVDMGLIFS 1404
Score = 331 (121.6 bits), Expect = 7.6e-139, Sum P(3) = 7.6e-139
Identities = 84/266 (31%), Positives = 138/266 (51%)
Query: 316 VTNVESVSSAVELSTSP-PPQVVEKKEHKCAEWEAIQTEPSTSEPQVHSRTADDSLPLAT 374
V + S+S A +S P P E + + I ++ + S ++ S +
Sbjct: 263 VDDTASLSKAT-ISQQPLSPMTPLSSELDVSAFSEINSKIKNVDVPASSYSSPISKVSPS 321
Query: 375 D--HENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLP 432
D E+ +F F++D + ++Y G++ LFGKV+ K + SC + V I R +Y LP
Sbjct: 322 DVTEEDGSLF-FFWMD-YTEMY---GSLCLFGKVYDKATKQYVSCFLKVDGIMRSLYFLP 376
Query: 433 RSEHLKTKEPVSIAQVYSEFDQIA---TQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEV 489
R E AQ +D++A ++ + ++KSR + KYAF L VP ++YLEV
Sbjct: 377 RPSSSSVSEDSIAAQTKDVYDEVANLLSKRGVKEWKSRVSKYKYAFELEDVPRTADYLEV 436
Query: 490 RYSAKCPALPSDLSGDTFSHVFGTKSSFLENLLLERKIKGPSWLEFPEAEKFPS--RISW 547
YS PALP+DL+G +FSHVFGT ++ E +L R++ GP WL+ + F + SW
Sbjct: 437 IYSYSYPALPTDLTGSSFSHVFGTNTALFEQFVLSRRVMGPCWLKIQQPN-FDAVKNASW 495
Query: 548 CKYEVQCNQMEKIRITNVCGNVLSRT 573
C+ E+ C+ + I ++ + S+T
Sbjct: 496 CRVEIGCSSPQNISVSFEKNEITSKT 521
Score = 100 (40.3 bits), Expect = 7.6e-139, Sum P(3) = 7.6e-139
Identities = 39/161 (24%), Positives = 69/161 (42%)
Query: 46 RAKRQKIDKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKR-QEXX 104
R + I + +FA + L+ G+ YE +E +Y+ VSE+EY + V +R E
Sbjct: 2 RKRNAGIKPSQRFAELRALRQA-GKTRASTYESKENEELYDNVSEEEYRKIVRQRLDEDD 60
Query: 105 XXXXXXXXXYVEDGREIFDD----DIEDVPQXXXXXXXXXXXXNI-QNPNAK-GDIQKLL 158
YV++G + +D D +D + N+ PN + G K
Sbjct: 61 FVVDDNGAGYVDNGYDEWDQSHYSDEDDENEKGSSGRKRKKSKNVLAEPNQQIGAFFKAN 120
Query: 159 ANMPVKKKKKEEVQLNNDDVLADLLSEVNTTIAPTLKLNTK 199
A P + + D+ +A++L ++ I P +L+TK
Sbjct: 121 AIQPASRIANRKNNEKEDEFMAEILGSIDQDI-PE-RLSTK 159
Score = 38 (18.4 bits), Expect = 5.1e-29, Sum P(3) = 5.1e-29
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 1186 DITKALTKSDTPSIKF 1201
DI K L +D PS F
Sbjct: 556 DIEKGLPANDMPSYSF 571
>CGD|CAL0002431 [details] [associations]
symbol:POL1 species:5476 "Candida albicans" [GO:0005658
"alpha DNA polymerase:primase complex" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0003688 "DNA replication origin
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0006279 "premeiotic DNA replication"
evidence=IEA] [GO:0033314 "mitotic DNA replication checkpoint"
evidence=IEA] [GO:0006269 "DNA replication, synthesis of RNA
primer" evidence=IEA] [GO:0006270 "DNA replication initiation"
evidence=IEA] [GO:0000734 "gene conversion at mating-type locus,
DNA repair synthesis" evidence=IEA] [GO:0006278 "RNA-dependent DNA
replication" evidence=IEA] [GO:0000723 "telomere maintenance"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
CGD:CAL0002431 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
GO:GO:0001882 SUPFAM:SSF53098 EMBL:AACQ01000003 EMBL:AACQ01000004
GO:GO:0003887 KO:K02320 eggNOG:COG0417 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR024647 Pfam:PF12254
TIGRFAMs:TIGR00592 RefSeq:XP_722942.1 RefSeq:XP_723089.1
STRING:Q5ANM8 GeneID:3635144 GeneID:3635340 KEGG:cal:CaO19.13294
KEGG:cal:CaO19.5873 Uniprot:Q5ANM8
Length = 1470
Score = 1037 (370.1 bits), Expect = 2.8e-129, Sum P(3) = 2.8e-129
Identities = 246/663 (37%), Positives = 356/663 (53%)
Query: 550 YEVQCNQMEKIRITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQ-------- 601
+ Q + K ++TN+ GN S TL G R+ RNE++LLH F +Y++PDK+
Sbjct: 756 FATQILSLSK-QLTNIAGNAWSHTLSGTRAGRNEYILLHEFKRNNYIVPDKEDKTHKNTS 814
Query: 602 YXXXXXXXXXXXXXXXXXXRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNI 661
Y KK Y GGLV EP+KG + ++++MDFNSLYPSIIQE+NI
Sbjct: 815 YQQEARVENAEEDATTATSNKKPKYQGGLVFEPEKGLHKNYVLVMDFNSLYPSIIQEFNI 874
Query: 662 CFTTIPV-RMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDL 720
CFTT+ R D LPE ++G+LP + LV RR+VK L+K P +
Sbjct: 875 CFTTVNRDRFNITHDENKDMPILPERDTESGVLPRLLNTLVSRRREVKKLLKDPKNTPFQ 934
Query: 721 LMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEV 780
QYDI+Q+ALKLTANSMYGCLG+ NSRF+A+PLA LVT KGREIL++T+ L E+ + V
Sbjct: 935 KAQYDIKQQALKLTANSMYGCLGYVNSRFYAKPLAMLVTNKGREILMDTRQLAESSSLRV 994
Query: 781 IYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVXXXXXXXXXXXXXXX 840
+YGDTDS+MI + Y KIG Q K + N+ Y+ LE+DID V
Sbjct: 995 VYGDTDSVMIDTGASSYQEAIKIGEQFKVQVNERYRLLEIDIDNVFKRLLLHAKKKYAAM 1054
Query: 841 XXXXX-XNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNI 899
+ + E+KG+D+ RR++ QL+ + FV+++IL +D + L +
Sbjct: 1055 NASINKATNEETATLEVKGLDMRRREYCQLSKDISTFVLTKIL-----SDSDPETALLEV 1109
Query: 900 HEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQG 959
++++ ++ + N +P+ +I +L+K P+ Y + K++P VQVALRL K +K G
Sbjct: 1110 YDYLDDMKGKIQNNEIPIDKYKINTKLSKDPKSYPNGKSMPQVQVALRLRE-EGKVIKAG 1168
Query: 960 DTISYIIC---EDGTSEAATQRAYNIEEL--KNNSKLKIDVNYYLSQQIHPVVTRLLEPI 1014
I+Y+I +DG + +RA I+EL K + LK D NYYL +QI V RLLE I
Sbjct: 1169 SVITYVITAAKDDGDNSTVAERARAIQELLSKKDPDLKPDANYYLEKQIFAPVERLLERI 1228
Query: 1015 EGTDAVRIAECLGLDTSLYRSQIKESIQQSEENILGVGEAEEVKYQFCDKFEFTCMNPSC 1074
EG D VR+A LG+DT Y ++K S E + +++ +++ C S
Sbjct: 1229 EGIDMVRVATSLGIDTKRYILRVKNSDANGEILPIESNISDKERFRATSYLVLHCKCGSS 1288
Query: 1075 KQVNTVEAPTRLSTHGVVFVLDECINPECKVPPYTYLP-HLINKLSQDMNKYIVKYYEGW 1133
+ + A T+ V F C +C YT+ L ++L + K+I YY GW
Sbjct: 1289 FRFGGIMAA---ETYKVTFN-GVCCT-KCN---YTFPAIKLTSQLESMIRKHIALYYAGW 1340
Query: 1134 LKCEDPGCSDLTR-------RCPLGLKTRLCTTCHKYKLHRVYTELQLYQQLSFFHYICD 1186
L C+DP C TR RC +G R C +R Y + QLY QL +F I D
Sbjct: 1341 LVCDDPACGITTRQISVYGKRC-IGNSGR-AMDCKGVMRYR-YNDKQLYNQLLYFQSIFD 1397
Query: 1187 ITK 1189
+ K
Sbjct: 1398 VDK 1400
Score = 222 (83.2 bits), Expect = 2.8e-129, Sum P(3) = 2.8e-129
Identities = 71/249 (28%), Positives = 121/249 (48%)
Query: 329 STSPPPQVVEKKEHKCAEWEAIQTEPST--SEPQVHSRTADDSLPLATDH--ENKKVFRM 384
S P VV+K + PS+ S+P V+++ ++ + ++ D+ + F+M
Sbjct: 273 SRKPRAAVVKKNQVDTVSAVKANQLPSSPISKP-VYTKFSNHTEKVSKDNIKDTSDSFKM 331
Query: 385 FFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRS------EHLK 438
F+ D E ++ LFGK+ KE S V V I R+++ LPR E K
Sbjct: 332 FWFDYAE----AENSLLLFGKIMTKEGKLVSGV-VKVDGICRELFFLPREYRIVDDEEDK 386
Query: 439 TKEPVSIAQVYSEFDQIA-TQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEV----RYSA 493
+K+ +I V E + Y + + +++ KKYAF L +P +EYL+V
Sbjct: 387 SKKLTAI-DVLEEIQPLLLANYNLEELRAKPEVKKYAFELADIPKEAEYLKVLLPFNNET 445
Query: 494 KCPALPSDLSGDTFSHVFGTKSSFLENLLLERKIKGPSWLEFPEAEKFPS--RISWCKYE 551
+P+++ G TF HVFGT ++ E+ +++R I GP WLE + F + S C+ E
Sbjct: 446 NRNIMPANIEGSTFRHVFGTNANMFESFIMQRNIMGPCWLEIRGGD-FDAMQNASHCQVE 504
Query: 552 VQCNQMEKI 560
V ++ +I
Sbjct: 505 VVVDRPSQI 513
Score = 53 (23.7 bits), Expect = 2.8e-129, Sum P(3) = 2.8e-129
Identities = 29/130 (22%), Positives = 48/130 (36%)
Query: 62 QKLKDLK--GQGVKHKYEFTADEN-VYEEVSEKEYTERVLKR-QEXXXXXXXXXXXYVED 117
Q+LK+ + G+ V T D N +Y+EV E Y + + YV++
Sbjct: 12 QQLKEARKTGRNVNVVESDTDDYNEIYDEVDEDTYRQHKRNQLMNDDFIVDDNGEGYVDN 71
Query: 118 GREIFDDD-----IEDVPQXXXXXXXXXXXXNIQNPNAK-GDIQKLLANMPVKKKKKEEV 171
G + +DD D + AK I+ M K+++
Sbjct: 72 GADDWDDASRPNYYSDEENESMGSRKRRKKEDKTTKVAKTSQIRNFFKPMSGVSDSKKKL 131
Query: 172 QLNNDDVLAD 181
+ N DD+L D
Sbjct: 132 ETNIDDILND 141
Score = 47 (21.6 bits), Expect = 1.2e-128, Sum P(3) = 1.2e-128
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 44 GGRAKRQKIDKTNKFAAFQKLKD 66
G R +R+K DKT K A ++++
Sbjct: 94 GSRKRRKKEDKTTKVAKTSQIRN 116
>SGD|S000005046 [details] [associations]
symbol:POL1 "Catalytic subunit of the DNA polymerase I
alpha-primase complex" species:4932 "Saccharomyces cerevisiae"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001882
"nucleoside binding" evidence=IEA] [GO:0000731 "DNA synthesis
involved in DNA repair" evidence=IMP] [GO:0006270 "DNA replication
initiation" evidence=IC] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA;IDA] [GO:0006278 "RNA-dependent DNA
replication" evidence=IDA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA;IMP]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0000076
"DNA replication checkpoint" evidence=IBA] [GO:0000084 "S phase of
mitotic cell cycle" evidence=IBA] [GO:0006269 "DNA replication,
synthesis of RNA primer" evidence=IBA] [GO:0000734 "gene conversion
at mating-type locus, DNA repair synthesis" evidence=IBA]
[GO:0006271 "DNA strand elongation involved in DNA replication"
evidence=IBA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0051536 "iron-sulfur cluster binding" evidence=IEA] [GO:0051539
"4 iron, 4 sulfur cluster binding" evidence=IEA] [GO:0005657
"replication fork" evidence=IDA] [GO:0006279 "premeiotic DNA
replication" evidence=IMP] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IDA] [GO:0006273 "lagging
strand elongation" evidence=IC] InterPro:IPR004578
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR015088 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 Pfam:PF08996 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 SGD:S000005046 GO:GO:0005739
GO:GO:0000166 GO:GO:0046872 GO:GO:0003677 EMBL:BK006947
GO:GO:0051539 GO:GO:0006270 GO:GO:0001882 SUPFAM:SSF53098
GO:GO:0006278 EMBL:Z50161 GO:GO:0000084 GO:GO:0000076 PDB:3OIQ
PDBsum:3OIQ GO:GO:0006279 GO:GO:0003887 RefSeq:NP_014297.3
GeneID:855621 KEGG:sce:YNL102W KO:K02320 GO:GO:0006273
GO:GO:0006269 eggNOG:COG0417 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0005658 PDB:3FLO PDBsum:3FLO HOGENOM:HOG000163524
OrthoDB:EOG4K0TWK GO:GO:0000734 InterPro:IPR024647 Pfam:PF12254
TIGRFAMs:TIGR00592 EMBL:J03268 EMBL:Z71378 EMBL:Z12126 PIR:S58250
RefSeq:NP_014303.3 ProteinModelPortal:P13382 SMR:P13382
DIP:DIP-2526N IntAct:P13382 MINT:MINT-421899 STRING:P13382
PaxDb:P13382 PeptideAtlas:P13382 PRIDE:P13382 EnsemblFungi:YNL102W
GeneID:855628 KEGG:sce:YNL096C CYGD:YNL102w
GeneTree:ENSGT00550000074891 KO:K02993 OMA:CASIQGT
EvolutionaryTrace:P13382 NextBio:979813 ArrayExpress:P13382
Genevestigator:P13382 GermOnline:YNL102W Uniprot:P13382
Length = 1468
Score = 936 (334.5 bits), Expect = 9.0e-123, Sum P(4) = 9.0e-123
Identities = 238/661 (36%), Positives = 360/661 (54%)
Query: 550 YEVQCNQMEKIRITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYXXXXXXX 609
Y +Q + K ++TN+ GN ++TL G R+ RNE++LLH F +++PDK+
Sbjct: 766 YRIQLLTLTK-QLTNLAGNAWAQTLGGTRAGRNEYILLHEFSRNGFIVPDKEGNRSRAQK 824
Query: 610 XXXXXXXXXX--XRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP 667
KKA Y GGLV EP+KG + ++++MDFNSLYPSIIQE+NICFTT+
Sbjct: 825 QRQNEENADAPVNSKKAKYQGGLVFEPEKGLHKNYVLVMDFNSLYPSIIQEFNICFTTVD 884
Query: 668 VRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIR 727
DI L +P +VD G+LP + LV+ RR+VK +MK +Q DIR
Sbjct: 885 ---RNKEDIDELPS-VPPSEVDQGVLPRLLANLVDRRREVKKVMKTET-DPHKRVQCDIR 939
Query: 728 QKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDS 787
Q+ALKLTANSMYGCLG+ NSRF+A+PLA LVT KGREIL+NT+ L E++N V+YGDTDS
Sbjct: 940 QQALKLTANSMYGCLGYVNSRFYAKPLAMLVTNKGREILMNTRQLAESMNLLVVYGDTDS 999
Query: 788 LMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVXXXXXXXXXXXXXXXXXXXXXN 847
+MI ++Y KIG K N+ Y+ LE+DID V N
Sbjct: 1000 VMIDTGCDNYADAIKIGLGFKRLVNERYRLLEIDIDNVFKKLLLHAKKKYAALTVNLDKN 1059
Query: 848 GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIR 907
G E+KG+D+ RR++ L+ + V++ IL +D ++ LQ ++++++ IR
Sbjct: 1060 GNGTTVLEVKGLDMKRREFCPLSRDVSIHVLNTIL-----SDKDPEEALQEVYDYLEDIR 1114
Query: 908 TDLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQGDTISYIIC 967
++ + + +I +L+K P+ Y K +P VQVALR+ + +K G I+++I
Sbjct: 1115 IKVETNNIRIDKYKINMKLSKDPKAYPGGKNMPAVQVALRMRKAG-RVVKAGSVITFVIT 1173
Query: 968 -EDGTSEAA-------TQRAYNIEE--LKNNSKLKIDVNYYLSQQIHPVVTRLLEPIEGT 1017
+D AA +RA+ + E +K+N+ + D YYL +QI V RLLE I+
Sbjct: 1174 KQDEIDNAADTPALSVAERAHALNEVMIKSNNLIP-DPQYYLEKQIFAPVERLLERIDSF 1232
Query: 1018 DAVRIAECLGLDTSLYRSQIKESIQQSEENILGVGEAE----EVKYQFCDK--FEFTCMN 1071
+ VR++E LGLD+ Y +E + E+I + E +V+ +F D E +C
Sbjct: 1233 NVVRLSEALGLDSKKYFR--REGGNNNGEDINNLQPLETTITDVE-RFKDTVTLELSC-- 1287
Query: 1072 PSCKQVNTVEAPTRLSTHGVVFVLDECINPECKVPPYTYLPHLINKLSQDMNKYIVKYYE 1131
PSC + + + V + +C C+ +T L L +++ + +I YY
Sbjct: 1288 PSCDKRFPFGGIVSSNYYRVSYNGLQC--KHCE-QLFTPL-QLTSQIEHSIRAHISLYYA 1343
Query: 1132 GWLKCEDPGCSDLTRRCPLGLKTRL---CTTCHKYKLHRVYTELQLYQQLSFFHYICDIT 1188
GWL+C+D C +TR+ + K L CT +YK Y++ QLY QL +F + D
Sbjct: 1344 GWLQCDDSTCGIVTRQVSVFGKRCLNDGCTGVMRYK----YSDKQLYNQLLYFDSLFDCE 1399
Query: 1189 K 1189
K
Sbjct: 1400 K 1400
Score = 238 (88.8 bits), Expect = 9.0e-123, Sum P(4) = 9.0e-123
Identities = 72/233 (30%), Positives = 118/233 (50%)
Query: 382 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKTKE 441
F+MF+LD E T+ LFGKV +K++N S+ V + + R+++ LPR + K
Sbjct: 352 FQMFWLDYCE----VNNTLILFGKVKLKDDNCVSAM-VQINGLCRELFFLPR----EGKT 402
Query: 442 PVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCP----- 496
P I + + +Y + + +++ + KY+F LP +P S+YL+V + P
Sbjct: 403 PTDIHEEIIPL--LMDKYGLDNIRAKPQKMKYSFELPDIPSESDYLKVLLPYQTPKSSRD 460
Query: 497 ALPSDLSGDTFSHVFGTKSSFLENLLLERKIKGPSWLEFPEAEKFPS--RISWCKYEVQC 554
+PSDLS DTF HVFG S+ E+ +++ +I GP WL+ A+ F S S C EV
Sbjct: 461 TIPSDLSSDTFYHVFGGNSNIFESFVIQNRIMGPCWLDIKGAD-FNSIRNASHCAVEVSV 519
Query: 555 NQMEKIRITNV-------CGNVLSRTLMGGRSERNEF--LLLHAFHEKSYVLP 598
++ + I T C ++ +TLM + + E + L A+ S P
Sbjct: 520 DKPQNITPTTTKTMPNLRCLSLSIQTLMNPKENKQEIVSITLSAYRNISLDSP 572
Score = 71 (30.1 bits), Expect = 9.0e-123, Sum P(4) = 9.0e-123
Identities = 46/170 (27%), Positives = 71/170 (41%)
Query: 54 KTNKFAAFQKLKDLKGQGVKHKYEFT-AD-ENVYEEVSEKEYTERVLKRQEXXXXXXXXX 111
K+ K +KL+ + YE +D + +Y+E+ EKEY R KRQE
Sbjct: 4 KSEKLEKLRKLQAARNGTSIDDYEGDESDGDRIYDEIDEKEYRAR--KRQELLHDDFVVD 61
Query: 112 XX---YV-----EDGREIFDDDIEDVPQXXXXXXXXXXXXNI--QNPNAKGDIQK----- 156
YV ED RE+ D+ D NI + + D+ +
Sbjct: 62 DDGVGYVDRGVEEDWREV-DNSSSDEDTGNLASKDSKRKKNIKREKDHQITDMLRTQHSK 120
Query: 157 --LLANMPVKKKKKEEVQLNN-DDVLADLLS-EVNTTIAPTLKLNTKTNE 202
LLA+ KK +K+ + ++N DD+L + S EV P + L +K E
Sbjct: 121 STLLAH--AKKSQKKSIPIDNFDDILGEFESGEVEK---PNILLPSKLRE 165
Score = 50 (22.7 bits), Expect = 2.5e-16, Sum P(4) = 2.5e-16
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 1184 ICDITKALTKSDTPSIK-FD-SETYMGYCKMKQH 1215
ICDI + +S TP + +D SE Y C+ K+H
Sbjct: 696 ICDIANEMGQSLTPKCQSWDLSEMYQVTCE-KEH 728
Score = 37 (18.1 bits), Expect = 9.0e-123, Sum P(4) = 9.0e-123
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 241 SPLKDEIKSNDSVMEVEMNVAEQSKEEPVDD 271
+P K ++SN V + +NV ++ +P D
Sbjct: 321 TPSKS-LQSNTDVATLAVNVKKEDVVDPETD 350
>UNIPROTKB|Q755Y6 [details] [associations]
symbol:AER381C "DNA polymerase" species:284811 "Ashbya
gossypii ATCC 10895" [GO:0000734 "gene conversion at mating-type
locus, DNA repair synthesis" evidence=IBA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IBA] [GO:0005634
"nucleus" evidence=IBA] [GO:0005658 "alpha DNA polymerase:primase
complex" evidence=IBA] [GO:0006260 "DNA replication" evidence=IBA]
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IBA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 GO:GO:0001882
SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0006303 EMBL:AE016818
GenomeReviews:AE016818_GR GO:GO:0003887 KO:K02320 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
HOGENOM:HOG000163524 OrthoDB:EOG4K0TWK GO:GO:0000734
InterPro:IPR024647 Pfam:PF12254 TIGRFAMs:TIGR00592 OMA:CASIQGT
RefSeq:NP_985237.1 ProteinModelPortal:Q755Y6 STRING:Q755Y6
EnsemblFungi:AAS53061 GeneID:4621453 KEGG:ago:AGOS_AER381C
PhylomeDB:Q755Y6 Uniprot:Q755Y6
Length = 1435
Score = 950 (339.5 bits), Expect = 2.6e-120, Sum P(3) = 2.6e-120
Identities = 233/663 (35%), Positives = 349/663 (52%)
Query: 550 YEVQCNQMEKIRITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYXXXXXXX 609
+ +Q + K ++TN+ GN TL G R+ RNEF+LLH F+ +Y+LPDK+
Sbjct: 735 FRIQILSLTK-QLTNLAGNSWGHTLGGTRAGRNEFILLHEFYRNNYILPDKESRQMRSAR 793
Query: 610 XXXX--------XXXXXXXRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNI 661
KKA Y GGLV +P KG + +I++MDFNSLYPSIIQE+NI
Sbjct: 794 QQQNVDTPDGDVATDSRNSNKKAKYQGGLVFDPDKGLHKNYILVMDFNSLYPSIIQEFNI 853
Query: 662 CFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLL 721
CFTT+ DI L + +P + G+LP + LVE RR+VK LM +
Sbjct: 854 CFTTVE---RNPHDIDELPQ-VPT-EAKPGVLPRLLANLVERRREVKKLMNAET-DAHKK 907
Query: 722 MQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVI 781
+ DIRQ+ALKLTANSMYGCLG+ NSRF+A+PLA LVT KGREIL+NT+ L E+L V+
Sbjct: 908 AECDIRQQALKLTANSMYGCLGYVNSRFYAKPLAMLVTNKGREILMNTRQLAESLGLAVV 967
Query: 782 YGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVXXXXXXXXXXXXXXXX 841
YGDTDS+MI ++Y IG K N+ Y+ LE+DID V
Sbjct: 968 YGDTDSVMIDTGCDNYREALSIGENFKKLVNERYRLLEIDIDNVFKKLLLHAKKKYAALN 1027
Query: 842 XXXXXNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHE 901
G I S E+KG+D+ RR++ L+ E V++ IL +Q + L+N+++
Sbjct: 1028 VSFDKAGNEITSLEVKGLDMRRREYCPLSKEVSTQVLNTILSDQDS-----ESALENVYD 1082
Query: 902 HMKKIRTDLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQGDT 961
+M+ I++ ++N + +I +L+K P+ Y + K +P VQVAL++ + + G
Sbjct: 1083 YMETIKSKIENNEIRADKFKINTRLSKDPKSYPNGKTMPAVQVALKMRAVG-RVVNAGTV 1141
Query: 962 ISYIICEDGTSEAA----TQRAYNIEELKNNSK-LKIDVNYYLSQQIHPVVTRLLEPIEG 1016
I++++ + GT E+ RA + E+ N + L D YYL +QI V RLL+ IE
Sbjct: 1142 ITFVVTK-GTDESEQSNPADRARPLHEVMNKANGLVPDPMYYLEKQIFAPVERLLQKIES 1200
Query: 1017 TDAVRIAECLGLDTSLYRSQIKESIQ-QSEENILGVGEAEEVKYQFCDKFEFTCMNPSCK 1075
D VR+ LG+D + + +++S +SE L ++ +++ TC PSC
Sbjct: 1201 FDVVRLGNALGIDGRRFINNVQDSTSNRSELQPLESTISDMERFKDATAMRVTC--PSC- 1257
Query: 1076 QVNTVEAPTRLSTHGVVFVLDECINPECKVPPYTYLP-HLINKLSQDMNKYIVKYYEGWL 1134
Q S H F +CK + + P L ++L + +I +Y W+
Sbjct: 1258 QAKFPFGGIVASNH-YQFTYSGL---QCKACNHIFAPLQLTSQLEFAIRAHISLFYAAWM 1313
Query: 1135 KCEDPGCSDLTRRCPLGLKTRLCTTCHKYKLHRVYTELQLYQQLSFFHYICDITKALTKS 1194
C+DP C +TR+ + K L C +H Y++ QLY QL +F + D+TK +
Sbjct: 1314 VCDDPTCGTVTRQLSVFGKRCLNEACTGV-MHYRYSDKQLYNQLLYFDSLFDVTKTKNRD 1372
Query: 1195 DTP 1197
P
Sbjct: 1373 LKP 1375
Score = 220 (82.5 bits), Expect = 2.6e-120, Sum P(3) = 2.6e-120
Identities = 63/179 (35%), Positives = 92/179 (51%)
Query: 367 DDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDR 426
+D + ATD F MF+LD E ++ LFGK+ N H S V V I R
Sbjct: 310 EDIVDQATDS-----FSMFWLDYTE----LETSLLLFGKIKTL-NGKHISAMVQVAGIYR 359
Query: 427 KIYLLPRSEHLKTKEPVSIAQVYSEF-DQIATQYKILDFKSRKIEKKYAFNLPGVPDLSE 485
++Y LPR E + +V+ E + +Y + +++ +K YAF L +P +E
Sbjct: 360 ELYFLPR-------EGKTALEVHEEIIPLLMDKYGLSTIRAKPEKKMYAFELADIPKEAE 412
Query: 486 YLEVR--YSA-KCP--ALPSDLSGDTFSHVFGTKSSFLENLLLERKIKGPSWLEFPEAE 539
YL+V Y KC +PSDL GDTF HVFG SS E+ +++R+I GP WL + +
Sbjct: 413 YLKVLLPYETPKCKNVVIPSDLCGDTFCHVFGGNSSIFESFVIQRRILGPCWLSIKQGD 471
Score = 67 (28.6 bits), Expect = 2.6e-120, Sum P(3) = 2.6e-120
Identities = 32/162 (19%), Positives = 70/162 (43%)
Query: 47 AKRQKIDKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEXXXX 106
A + K++ K +A + K + + + + + + VY+ V E+++ E+ +R+E
Sbjct: 2 AAKDKLELLKKLSAARTSKSSR-EVLDEELGYNDENRVYDLVGEEQFQEQ--RRRELLRD 58
Query: 107 XXXXXXX---YVEDGREIFDDDIEDVPQXXXXXXXXXXXXNIQNPNAKGDIQKLLAN--- 160
YV +G + + D DV + + D+ +++AN
Sbjct: 59 DFVVDDDGQGYVNNGLDEWADTRGDVSSDENDPQQRQAS---NKKDGRRDLIEMMANAQK 115
Query: 161 ---MPVKKKKKEEVQLNNDDVLADLLSEVNTTIAPTLKLNTK 199
+P +KK K + DD+L + S V+T + P ++ ++
Sbjct: 116 SRAVPQQKKVKRVDESAFDDILEEF-SVVHTAVKPLARVTSE 156
Score = 41 (19.5 bits), Expect = 3.4e-13, Sum P(4) = 3.4e-13
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 981 NIEELKNNSKLKIDVNYYLSQQIHPVVTRLLEP 1013
+ E+KN+S +V + Q I P RL P
Sbjct: 471 DFNEIKNSSHCDSEVFISIPQNISPHQERLPAP 503
Score = 38 (18.4 bits), Expect = 9.3e-14, Sum P(3) = 9.3e-14
Identities = 6/23 (26%), Positives = 14/23 (60%)
Query: 801 FKIGNQIKSECNKLYKQLELDID 823
+++G + C + YK LE++ +
Sbjct: 683 WELGEMYQVVCQREYKPLEINFN 705
Score = 37 (18.1 bits), Expect = 3.4e-13, Sum P(4) = 3.4e-13
Identities = 12/46 (26%), Positives = 24/46 (52%)
Query: 1184 ICDITKALTKSDTPSIK-FD-SETYMGYCKMK-QHVERFLESSAYN 1226
+CDI+ + +S TP + ++ E Y C+ + + +E S Y+
Sbjct: 665 LCDISNEMGQSLTPKCQSWELGEMYQVVCQREYKPLEINFNDSRYH 710
>UNIPROTKB|I3LIH4 [details] [associations]
symbol:POLA1 "DNA polymerase" species:9823 "Sus scrofa"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098
GO:GO:0003887 Gene3D:3.90.1600.10 InterPro:IPR023211
TIGRFAMs:TIGR00592 GeneTree:ENSGT00550000074891
Ensembl:ENSSSCT00000027952 OMA:ESHETTT Uniprot:I3LIH4
Length = 497
Score = 1153 (410.9 bits), Expect = 4.9e-117, P = 4.9e-117
Identities = 231/422 (54%), Positives = 299/422 (70%)
Query: 560 IRITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYXXX-------XXXXXXX 612
++ITN+ GN++SRTLMGGRSERNEFLLLHAF+E +Y++PDKQ
Sbjct: 78 LQITNIAGNIMSRTLMGGRSERNEFLLLHAFYENNYIVPDKQIFRKPQQKLGDEDEDIDG 137
Query: 613 XXXXXXXXRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP----- 667
RKKAAYSGGLVL+PK GFYDKFI+L+DFNSLYPSIIQE+NICFTT+
Sbjct: 138 DASKYKKGRKKAAYSGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTVQRVASE 197
Query: 668 -VRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDI 726
++ +D + + E LP+ ++ GILP EI+KLVE RRQVK LMKQP+L+ DL++QYDI
Sbjct: 198 AEKVTEDGEQEQIPE-LPDPGLEMGILPREIRKLVERRRQVKQLMKQPDLNPDLVLQYDI 256
Query: 727 RQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTD 786
RQKALKLTANSMYGCLGF SRF+A+PLAALVT KGREIL++TK +V+ +N EVIYGDTD
Sbjct: 257 RQKALKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREILMHTKEMVQKMNLEVIYGDTD 316
Query: 787 SLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVXXXXXXXXXXXXXXXXXXXXX 846
S+MI+ N N + VFK+GN++KSE NKLYK LE+DIDG+
Sbjct: 317 SIMINTNSNSLEEVFKLGNKVKSEVNKLYKLLEIDIDGIFKSLLLLKKKKYAALVVEPTS 376
Query: 847 NGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKI 906
+G I QE+KG+D++RRDW LA + G FVI QIL +QS D ++NI + + +I
Sbjct: 377 DGNYITKQEVKGLDIIRRDWCDLAKDTGNFVIGQILSDQSR-----DTIVENIQKRLIEI 431
Query: 907 RTDLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQGDTISYII 966
++ NG VP++ EI K LTK P++Y D+K+LPHV VAL +N+ +K+K GDT+SYII
Sbjct: 432 GENVLNGSVPVSQFEINKALTKDPQDYPDKKSLPHVHVALWINSQGGRKVKAGDTVSYII 491
Query: 967 CE 968
C+
Sbjct: 492 CQ 493
>DICTYBASE|DDB_G0282191 [details] [associations]
symbol:polA1 "DNA polymerase alpha catalytic subunit"
species:44689 "Dictyostelium discoideum" [GO:0006260 "DNA
replication" evidence=IEA;IBA] [GO:0006139 "nucleobase-containing
compound metabolic process" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA;IBA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0001882 "nucleoside binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA;ISS] [GO:0003896 "DNA
primase activity" evidence=ISS] [GO:0006273 "lagging strand
elongation" evidence=ISS] [GO:0006272 "leading strand elongation"
evidence=ISS] [GO:0006270 "DNA replication initiation"
evidence=ISS] [GO:0006269 "DNA replication, synthesis of RNA
primer" evidence=ISS] [GO:0005658 "alpha DNA polymerase:primase
complex" evidence=ISS;IBA] [GO:0000731 "DNA synthesis involved in
DNA repair" evidence=ISS] [GO:0006297 "nucleotide-excision repair,
DNA gap filling" evidence=IBA] [GO:0019985 "translesion synthesis"
evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=IBA] [GO:0005634 "nucleus"
evidence=IEA;IBA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0016740 "transferase activity" evidence=IEA] InterPro:IPR004578
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR015088 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 Pfam:PF08996 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 dictyBase:DDB_G0282191 GO:GO:0000166
GenomeReviews:CM000152_GR GO:GO:0046872 GO:GO:0003677 GO:GO:0051539
GO:GO:0006270 GO:GO:0001882 SUPFAM:SSF53098 EMBL:AAFI02000046
GO:GO:0008408 GO:GO:0006303 GO:GO:0000731 GO:GO:0003887 KO:K02320
GO:GO:0006273 GO:GO:0006269 GO:GO:0006272 eggNOG:COG0417
GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
TIGRFAMs:TIGR00592 OMA:CASIQGT RefSeq:XP_640277.1
ProteinModelPortal:Q54SV8 STRING:Q54SV8 EnsemblProtists:DDB0232274
GeneID:8623451 KEGG:ddi:DDB_G0282191 Uniprot:Q54SV8
Length = 1509
Score = 934 (333.8 bits), Expect = 5.5e-115, Sum P(4) = 5.5e-115
Identities = 236/685 (34%), Positives = 361/685 (52%)
Query: 561 RITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYXXXXXXXXXXXXXXXXXX 620
++TN+ GN ++L R+ER E+LLLH FHEK Y+LPDK Y
Sbjct: 827 QLTNLAGNQWDKSLKSNRAERIEYLLLHNFHEKKYLLPDKIYQKSSSSGGGGGAKDKD-- 884
Query: 621 RKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLC 680
AAYSGGLVL+PK FYD++++L+DFNSLYPSIIQEYN+CFTTI R+ +D
Sbjct: 885 -NHAAYSGGLVLDPKIDFYDRYVVLLDFNSLYPSIIQEYNVCFTTIN-RVKRDDGKWE-- 940
Query: 681 EYLPE-HQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMY 739
E +P ++ GILP + LV RR++K M+Q + + QYDI+Q+A+KL ANSMY
Sbjct: 941 EAMPPPSSIEKGILPKVLHGLVSKRREIKKRMEQEK-NKIIKAQYDIQQQAVKLIANSMY 999
Query: 740 GCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDS 799
GCLGF +SRF+A PLA LVT KGRE L S+V + Y+VIYGDTDSLMI V ++
Sbjct: 1000 GCLGFSHSRFYALPLAELVTRKGRENLQKGASIVNKMCYDVIYGDTDSLMIYTGVGTFNE 1059
Query: 800 VFKIGNQIKSECNKLYKQ--LELDIDGVXXXXXXXXXXXXXXXXXXXXXNGKMICSQEIK 857
IG +I+ + N Y+ +E+ +DG+ + C +E K
Sbjct: 1060 AETIGKEIQKKINDQYRGSVMEIGLDGIFKRLLLFKKKKYACLKEFRIDSTTTKCERENK 1119
Query: 858 GVDVVRRDWSQLASEAGKFVISQILD-EQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVP 916
G+D+VRRD+ L + G++V++ IL E+ +SL I E+++ ++ + + +
Sbjct: 1120 GIDIVRRDYCDLTKDIGQWVLNLILGGEEKIALFSL------IKEYLESVQQQIKDNTLA 1173
Query: 917 LTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQGDTISYIICEDGTSEAAT 976
+ ITK L+K PEEY D PHVQVAL++ ++ G+ + YII +S
Sbjct: 1174 VEKFIITKTLSKQPEEYNDADIQPHVQVALQMR-AKGLHVQPGEQVPYIITHGNSSSDIK 1232
Query: 977 QRAYNIEELKNN--SKLKIDVNYYLSQQIHPVVTRLLEPIEGTDAVRIAECLGLDTSLYR 1034
+ ++ ++ S +D+++YLSQQI P + R PI G + +A+ LG+ + Y+
Sbjct: 1233 EEWHHRARAPSDVESIQDVDIDWYLSQQILPSIQRNTGPI-GMEPHELAQWLGMTGTKYQ 1291
Query: 1035 SQIKESIQQSEENILG--VGEAEEVKYQFCDKFEFTCMNPSCKQVNTVEAPTRLSTHGVV 1092
Q QQS ++ E+++Y+ C F F C P C Q N ++ + G
Sbjct: 1292 KQFDHLQQQSNQDFKPRYTLSTEDLRYKQCKSFNFEC--PYCGQNNEFTGIVKIDSEGKS 1349
Query: 1093 FVLDECINPECKVPPYTYLPHLINKLSQDMNKYIVKYYEGW-LKCEDPGCSDLTRRCPLG 1151
+C K+P L L N+L ++ Y+ K Y W L+C + C +++
Sbjct: 1350 ESGFDCNQCHAKIP----LKKLANQLQLNIRTYL-KQYNDWDLRCTE--CEKVSKNYK-E 1401
Query: 1152 LKTRLCTTCHKYKLHRVYTELQLYQQLSFFHYICDITKALTKSDTPSIKFDSETYMGYCK 1211
R + K+ ++ T +L+ Q+SFF + L+ SD + +E +
Sbjct: 1402 TSYRCARPQCRGKMIQIMTSSKLFNQISFFSKL--FRNDLSNSDNTTTIIPNEDQNTLKQ 1459
Query: 1212 MKQHVERFLES-SAYNIVDLKKLFS 1235
KQ ++ FL YN V+L L +
Sbjct: 1460 AKQIIDSFLSKFDQYN-VNLNSLLT 1483
Score = 192 (72.6 bits), Expect = 5.5e-115, Sum P(4) = 5.5e-115
Identities = 46/160 (28%), Positives = 83/160 (51%)
Query: 414 HSSCCVIVQNIDRKIYLLPRSEHL-----KTKEPVSIAQVYSEFDQIATQYKILDFKSRK 468
++SCC+I++ ++R ++ LPR L T V+ + +E Q+ + KI D+K +K
Sbjct: 435 YASCCIIIEKMERNVFFLPRDYKLDQDGESTTIQVTDTMIEAELKQLVDRSKIKDYKLKK 494
Query: 469 IEKKYAFN--LP---GVPDLSEYL-EVRYSAKCPALPSDLSGDTFSHVFGTKSSFLENLL 522
+++ AF+ +P G Y+ ++ Y + P+D+ G TF +G SS +E L
Sbjct: 495 VKRTSAFDYSVPHKNGPVGEQHYVWKLSYPSNQMVFPNDIKGSTFRCAYGITSSPVELFL 554
Query: 523 LERKIKGPSWLEFPEAE-KFPSRISWCKYEVQCNQMEKIR 561
++RKI GP+WL F + S+ +YE + I+
Sbjct: 555 IKRKIMGPTWLTVSGITLNFDQKKSFARYEATVKSFKSIK 594
Score = 44 (20.5 bits), Expect = 5.5e-115, Sum P(4) = 5.5e-115
Identities = 26/101 (25%), Positives = 44/101 (43%)
Query: 318 NVESVSSAVELSTSPPPQ-VVEKKEHKCAEWEAIQTEPSTSEPQVHSRTADDSLPLATDH 376
N+ V+S + L T P Q + K+ +W + S V + ++ +P +D
Sbjct: 317 NLNKVNS-MSLPTRPQAQQFISPKQTNQEDWWSKTGVDSV----VLVKKLEEIMPKNSDL 371
Query: 377 ENKKV---FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSH 414
+ F L ED KQ G + LFGKV ++ + S+
Sbjct: 372 LKMNMDGSLDFFLLTTEED--KQ-GRIILFGKVKLQASKSN 409
Score = 41 (19.5 bits), Expect = 5.5e-115, Sum P(4) = 5.5e-115
Identities = 9/37 (24%), Positives = 22/37 (59%)
Query: 148 PNAKGDIQKLLAN-MPVKKKKKEEVQLNNDDVLADLL 183
P+++ D++KL + ++KK ++E LN + + +
Sbjct: 235 PDSELDLEKLKEKQLELEKKLEKEALLNKPTISTETI 271
Score = 38 (18.4 bits), Expect = 7.6e-99, Sum P(4) = 7.6e-99
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 408 VKENNSHSSCCVIVQNIDRKIYLLPRSEHLKT 439
+K N + +++ N K YLLP + K+
Sbjct: 840 LKSNRAERIEYLLLHNFHEKKYLLPDKIYQKS 871
>UNIPROTKB|Q23AJ0 [details] [associations]
symbol:TTHERM_00424700 "DNA polymerase" species:312017
"Tetrahymena thermophila SB210" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IBA] [GO:0005634 "nucleus"
evidence=IBA] [GO:0005658 "alpha DNA polymerase:primase complex"
evidence=IBA] [GO:0006260 "DNA replication" evidence=IBA]
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IBA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 GO:GO:0001882
SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0006303 GO:GO:0003887 KO:K02320
GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
TIGRFAMs:TIGR00592 EMBL:GG662724 RefSeq:XP_001013747.2
UniGene:Tth.5627 ProteinModelPortal:Q23AJ0 EnsemblProtists:EAR93502
GeneID:7845641 KEGG:tet:TTHERM_00424700 ProtClustDB:CLSZ2848284
Uniprot:Q23AJ0
Length = 1396
Score = 496 (179.7 bits), Expect = 2.0e-80, Sum P(5) = 2.0e-80
Identities = 123/311 (39%), Positives = 175/311 (56%)
Query: 672 QDSDITTLCEYLPEHQVDTGI--LPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQK 729
++ I + LP +V GI LPS ++ LVE R+ VK +K ++ DI+QK
Sbjct: 878 ENEQIVQTHDVLPTIEVIKGIAPLPSILQYLVEQRKVVKNQIKGQK-DPQVIETLDIKQK 936
Query: 730 ALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLM 789
A KL ANSMYGCLGF +SRF+A PLA+ +TAKGR IL ++K +VE++ Y VIYGDTDSLM
Sbjct: 937 AFKLVANSMYGCLGFSSSRFYAMPLASFITAKGRHILFDSKKIVEDMGYSVIYGDTDSLM 996
Query: 790 ISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVXXXXXXXXXXXXXXXXXXX----- 844
I N++ K G IK + N YK+L+LDIDGV
Sbjct: 997 IKPGTNEFLEAVKTGLSIKIKVNSKYKKLQLDIDGVFKNMLLLKKKKYATLKVANWEEVK 1056
Query: 845 XXNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMK 904
N +EIKG+DVVRRDW QL+ +AG ++ IL+ +S ++ LDD I +++
Sbjct: 1057 NTNAPEKLEKEIKGIDVVRRDWCQLSRDAGNKILEIILESKS-SENMLDD----IKKYLI 1111
Query: 905 KIRTDLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNS--KKLKQGDTI 962
++ D++ + + ITK+LTK ++Y + K LPHV VA R + I
Sbjct: 1112 QLNDDINQKNIKNSNYYITKRLTKRVDQYGE-KNLPHVAVAQRSIQEKGIDPQTYVNQII 1170
Query: 963 SYIICEDGTSE 973
SYIIC++ S+
Sbjct: 1171 SYIICKNEQSK 1181
Score = 239 (89.2 bits), Expect = 2.0e-80, Sum P(5) = 2.0e-80
Identities = 52/131 (39%), Positives = 74/131 (56%)
Query: 550 YEVQCNQMEKIRITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDK--------- 600
Y +Q + K ++T++CGN+ +L R+ERNE LLLH F++ +YV PD
Sbjct: 704 YHLQIVPLTK-QLTSICGNIWMGSLQNQRAERNEMLLLHKFNQLNYVYPDNFKNLPESYK 762
Query: 601 ------QYXXXXXXXXXXXXXXXXXXRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPS 654
Q +K+ Y GG V EP+KG Y+++I+L+DFNSLYPS
Sbjct: 763 KKHKNAQIRKQYEEDEDQAQGNKNPKKKENKYKGGQVFEPEKGLYNEYIVLLDFNSLYPS 822
Query: 655 IIQEYNICFTT 665
IIQE+N+CFTT
Sbjct: 823 IIQEFNVCFTT 833
Score = 212 (79.7 bits), Expect = 2.0e-80, Sum P(5) = 2.0e-80
Identities = 67/256 (26%), Positives = 122/256 (47%)
Query: 315 DVTNVESVSSAVEL-STSPPPQVVEK--KEHKCAEWEAIQTEPSTSE-PQVHSRTADDSL 370
D V+S+S +L S + + + K+ K + E T S S+ +++ +D L
Sbjct: 214 DSNTVDSISEFQKLKSLAQKANLANESLKQSKVSNTEINLTNLSISQVKKINDYKNEDDL 273
Query: 371 PLATDHENKKVFRM--FFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKI 428
+ + K++ + + D F D +P +Y F KV K+ N+ +C + + I R +
Sbjct: 274 YVVNQFQ-KQIGSVDAYLYDYFYDAQVKPDKIYAFAKVQNKQTNAFDTCVIQIDTIIRNL 332
Query: 429 YLLPRSEHLKTKEPVS--IAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEY 486
+ P S+ + T++ + IA++ + +Q T K ++F ++K YAF LP S +
Sbjct: 333 FFYPSSDTV-TEQQIKNEIAELLKK-EQ--TSRKNVEFLGAFVDKNYAFELPIPRGKSRW 388
Query: 487 LEVRYSAKCPALPSDLSGDTFSHVFGTKSSFLENLLLERKIKGPSWLEFPEAEKFPSRIS 546
+V S + + D G FS+ G+ S LE L+ +KI GPSW+ F + S I+
Sbjct: 389 YQVVMSYEYEVISPDTKGQYFSYCVGSTYSALETFLITKKITGPSWVRFQNVKDTTSCIT 448
Query: 547 WCKYEVQCNQMEKIRI 562
K E + + + I
Sbjct: 449 NRKLEFRVDYTNQSNI 464
Score = 152 (58.6 bits), Expect = 6.2e-43, Sum P(4) = 6.2e-43
Identities = 55/214 (25%), Positives = 99/214 (46%)
Query: 854 QEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDD---------------RLQN 898
+EIKG+DVVRRDW QL+ +AG ++ IL+ +S ++ LDD ++N
Sbjct: 1066 KEIKGIDVVRRDWCQLSRDAGNKILEIILESKS-SENMLDDIKKYLIQLNDDINQKNIKN 1124
Query: 899 IHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQ 958
+ ++ K T + + L + E+ D + + ++ + KL
Sbjct: 1125 SNYYITKRLTKRVDQYGEKNLPHVAVAQRSIQEKGIDPQTYVNQIISYIICKNEQSKLFF 1184
Query: 959 GDTISYIICEDGTSEAATQRAYNIEELKNNSK-LKIDVNYYLSQQIHPVVTRLLEPIEGT 1017
D+ I + +AY+ +E SK L+ID+ YY Q+ + R+LE IEG
Sbjct: 1185 VDSCMVNIQREKWWLLLVDKAYSPQEFITQSKSLEIDLQYYKRFQLFEPIKRMLEVIEGI 1244
Query: 1018 DAVRIAECLGLDTSLYRSQIKESIQQSEENILGV 1051
+ IA L + S+ + ++ + + EN+L +
Sbjct: 1245 NLQEIASILEVHYSV--QHVSQNNELNAENVLNL 1276
Score = 52 (23.4 bits), Expect = 2.0e-80, Sum P(5) = 2.0e-80
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 243 LKDEIKSN--DSVMEVEMNVAEQSKEEPVDDGLWEQMQIDDWDNSQQTQDVL 292
LK K+N D M++E ++ EE DD + + +I D+ S+Q Q +L
Sbjct: 21 LKQHSKNNRFDDDMDIEAYEDDEQIEE--DDFIDDTQEILDFRESKQEQFIL 70
Score = 45 (20.9 bits), Expect = 2.0e-80, Sum P(5) = 2.0e-80
Identities = 16/51 (31%), Positives = 24/51 (47%)
Query: 1015 EGTDAVRIAEC-LGLDTSLYRSQ-----IKESIQQSEENILGVGEAEEVKY 1059
E DA I +C G D + +KE I+ EEN + + + EE +Y
Sbjct: 1309 ENADAASILKCKCGNDIYIQLKNKIALVVKELIRNFEENAIQI-DNEEFEY 1358
Score = 42 (19.8 bits), Expect = 4.0e-80, Sum P(5) = 4.0e-80
Identities = 15/61 (24%), Positives = 28/61 (45%)
Query: 1171 ELQLYQQLSFFHYICDITKALTKSDTPSIKFDSETYMGYCKMKQHVERFLESSAYNIVDL 1230
+LQ Y++ F I + + + + I E + QHV + E +A N+++L
Sbjct: 1221 DLQYYKRFQLFEPIKRMLEVIEGINLQEIASILEVHYSV----QHVSQNNELNAENVLNL 1276
Query: 1231 K 1231
K
Sbjct: 1277 K 1277
Score = 42 (19.8 bits), Expect = 8.2e-12, Sum P(4) = 8.2e-12
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 946 LRLNNTNSKKLKQGDTISYIICEDGTSE 973
+ ++N+N +L Q +IS+I D T +
Sbjct: 513 INIDNSNKDELNQFKSISFITHIDPTKK 540
Score = 38 (18.4 bits), Expect = 1.9e-61, Sum P(4) = 1.9e-61
Identities = 28/173 (16%), Positives = 60/173 (34%)
Query: 16 EELNVKEGKSTRARSACSSFCVGTQKMEGGRAKRQKIDKTNKFAAFQKLKDLKGQGVKHK 75
EELN K+ + ++ V K + + ID ++ K ++ + +
Sbjct: 95 EELNKKKKTKNTILNYTNTTAVTNNKKKAISKQIPDIDIEEIMKLTERKKKIEQEEAQLL 154
Query: 76 YEFTADENVYEEVSEKEYTERVLKRQEXXXXXXXXXXXYVEDGREIFDDDIEDVPQXXXX 135
E E + +E E+E +R+ + + + D +I +
Sbjct: 155 QE--EQELLEQEKREEEEKKRISQEAKSILREDCASSKTANSSKGKVDQNILNAINRDFS 212
Query: 136 XXXXXXXXNIQNPNAKGDIQKL-LANMPVKKKKKEEVQLNNDDVLADLLSEVN 187
+ K QK LAN +K+ K ++N ++ + ++N
Sbjct: 213 DDSNTVDSISEFQKLKSLAQKANLANESLKQSKVSNTEINLTNLSISQVKKIN 265
Score = 37 (18.1 bits), Expect = 2.4e-61, Sum P(4) = 2.4e-61
Identities = 15/50 (30%), Positives = 22/50 (44%)
Query: 34 SFCVGT--QKMEGGRAKRQKIDKTNKFAAFQKLKDLKGQGVKHKYEFTAD 81
S+CVG+ +E + KI + + FQ +KD K EF D
Sbjct: 410 SYCVGSTYSALETFLITK-KITGPS-WVRFQNVKDTTSCITNRKLEFRVD 457
>UNIPROTKB|K7GS14 [details] [associations]
symbol:LOC100627036 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR012337 Pfam:PF03104 SUPFAM:SSF53098 InterPro:IPR024647
Pfam:PF12254 TIGRFAMs:TIGR00592 GeneTree:ENSGT00550000074891
EMBL:CU207412 EMBL:FP339588 Ensembl:ENSSSCT00000034075
Uniprot:K7GS14
Length = 562
Score = 548 (198.0 bits), Expect = 2.2e-71, Sum P(3) = 2.2e-71
Identities = 117/253 (46%), Positives = 161/253 (63%)
Query: 347 WEAIQTEPST-SEPQVHSRTADDS-LPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFG 404
W+ Q + S+ S P+V D S LPL + ++VF+ ++LDA+ED Y QPG V+LFG
Sbjct: 313 WDIDQEDDSSFSAPEVQ---VDSSHLPLVKGADGEQVFQFYWLDAYEDQYSQPGVVFLFG 369
Query: 405 KVFVKENNSHSSCCVIVQNIDRKIYLLPRSEH--LKT-KE---PVSIAQVYSEFDQ-IAT 457
KV+++ +H SCCV+V+NI+R +Y LPR L T KE PV++ VY EFD+ IA
Sbjct: 370 KVWIELAETHVSCCVMVKNIERTLYFLPRETKIDLNTGKEKGTPVTMKDVYDEFDEKIAA 429
Query: 458 QYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKSSF 517
+YKI+ FKS+ +EK YAF +P VP+ SEYLEVRYSA+ P LP DL G+TFSHVFGT +S
Sbjct: 430 KYKIMKFKSKPVEKNYAFEIPDVPEKSEYLEVRYSAEMPQLPQDLKGETFSHVFGTNTSS 489
Query: 518 LENLLLERKIKGPSWLEFPEAEKFPSRISWCKYEVQCNQMEKIRITNVCGN----VLS-- 571
LE L+ RKIKGP WLE + ISWCK+E + + + + G V+S
Sbjct: 490 LELFLMNRKIKGPCWLEVKNPQLLNQPISWCKFEAMALKPDLVNVIKDVGPPPLVVMSLS 549
Query: 572 -RTLMGGRSERNE 583
+T+ ++ NE
Sbjct: 550 MKTMQNAKTHENE 562
Score = 199 (75.1 bits), Expect = 2.2e-71, Sum P(3) = 2.2e-71
Identities = 50/154 (32%), Positives = 75/154 (48%)
Query: 42 MEGGRAKRQKIDKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQ 101
+ R++R+K K + A ++LK K G K+KYE +VYEEV E +Y++ V RQ
Sbjct: 22 LAASRSRREKKSKKGRQEALERLKRAKA-GEKYKYEVEDFTSVYEEVDEDQYSKLVQARQ 80
Query: 102 EXXXXXXXXXXXYVEDGREIFDDDIEDVPQXXXXXXXXXXXXNIQNPNAK-------GDI 154
+ YVEDGREIFDDD+ED N N K +I
Sbjct: 81 DDDWIVDDDGIGYVEDGREIFDDDLEDDALDSQEKGKDDKARNKDKRNVKKTVVTKPNNI 140
Query: 155 QKLLANMPVKKKKKEEVQLNNDDVLADLLSEVNT 188
+ + +K + + L+ DD+L D+L ++NT
Sbjct: 141 KSMFIASAGRKTADKAIDLSKDDLLGDILQDLNT 174
Score = 39 (18.8 bits), Expect = 2.4e-10, Sum P(3) = 2.4e-10
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 1203 SETYMGYCKMKQHVERFL 1220
+ET++ C M +++ER L
Sbjct: 376 AETHVSCCVMVKNIERTL 393
Score = 37 (18.1 bits), Expect = 2.2e-71, Sum P(3) = 2.2e-71
Identities = 5/11 (45%), Positives = 9/11 (81%)
Query: 331 SPPPQVVEKKE 341
+PPP ++ KK+
Sbjct: 180 TPPPVIISKKK 190
>UNIPROTKB|A8J9T2 [details] [associations]
symbol:POLA1 "DNA polymerase" species:3055 "Chlamydomonas
reinhardtii" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0005658
"alpha DNA polymerase:primase complex" evidence=IBA] [GO:0006260
"DNA replication" evidence=IBA] [GO:0006303 "double-strand break
repair via nonhomologous end joining" evidence=IBA] [GO:0008408
"3'-5' exonuclease activity" evidence=IBA] [GO:0019985 "translesion
synthesis" evidence=IBA] [GO:0006297 "nucleotide-excision repair,
DNA gap filling" evidence=IBA] InterPro:IPR004578
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 Pfam:PF00136 Pfam:PF03104 SMART:SM00486
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098
GO:GO:0008408 GO:GO:0006303 GO:GO:0003887 KO:K02320 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
InterPro:IPR024647 Pfam:PF12254 TIGRFAMs:TIGR00592 EMBL:DS496147
RefSeq:XP_001698708.1 ProteinModelPortal:A8J9T2
EnsemblPlants:EDO99390 GeneID:5724235 KEGG:cre:CHLREDRAFT_177262
BioCyc:CHLAMY:CHLREDRAFT_177262-MONOMER Uniprot:A8J9T2
Length = 1114
Score = 259 (96.2 bits), Expect = 3.0e-55, Sum P(5) = 3.0e-55
Identities = 53/105 (50%), Positives = 67/105 (63%)
Query: 561 RITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYXXXXXXXXXXXXXXXXXX 620
+++ + G + SRTL G R+ R E LLLH FH + +++PDKQ
Sbjct: 544 QLSALSGQLWSRTLAGQRAGRIEMLLLHEFHSRKFIVPDKQ----------SYKSKAAPS 593
Query: 621 RKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 665
Y+GGLVLEPKKG YDK +I++DFNSLYPSIIQEYNICFTT
Sbjct: 594 GNGPKYAGGLVLEPKKGLYDKIVIILDFNSLYPSIIQEYNICFTT 638
Score = 243 (90.6 bits), Expect = 3.0e-55, Sum P(5) = 3.0e-55
Identities = 58/198 (29%), Positives = 96/198 (48%)
Query: 803 IGNQIKSECNKLYKQLELDIDGVXXXXXXXXXXXXXXXXXXXXXNGKMICSQEIKGVDVV 862
+G +IK E NK YK LE+++DGV G++ E KG+D+V
Sbjct: 686 LGARIKREVNKRYKLLEIELDGVFKSILLLKKKKYAAVKLEPDGQGRLAEVMEQKGLDIV 745
Query: 863 RRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEI 922
RRDW L+ + G F ++ +L + ++ + IH H++++ + G +P+ I
Sbjct: 746 RRDWCPLSKDVGNFALAAVLSGRGR-----EEVVGEIHAHLRQVAERVRAGQIPMGKFII 800
Query: 923 TKQLTKAPEEYTDRKALPHVQVALRLNNTNSKK--LKQGDTISYIICE-DGTSEAATQRA 979
TKQLTK PE+Y D K PHVQVA+R + L +S ++ +GT A
Sbjct: 801 TKQLTKRPEDYPDAKNQPHVQVAMRRRAAGKRDGVLPIHPVVSRLVSPIEGTDAAHIADC 860
Query: 980 YNIEELKNNSKLKIDVNY 997
++ + + + D N+
Sbjct: 861 LGLDPARGGTLMDEDENF 878
Score = 193 (73.0 bits), Expect = 3.0e-55, Sum P(5) = 3.0e-55
Identities = 62/202 (30%), Positives = 95/202 (47%)
Query: 367 DDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDR 426
+D A K V + LDA+E+ +PG V LFGK+ E SC V V+ + R
Sbjct: 100 EDDTKQAGKKRKKGVLPFYLLDAYENPDARPGEVVLFGKIEA-EGGRWQSCAVAVRGLQR 158
Query: 427 KIYLLPRSEHLKTKEPVSIAQ---VYSEFDQIATQYKILDFKSRK----IE--KKYAFNL 477
+ ++PR E + + +A V ++ + K+L S +E K YAF
Sbjct: 159 TLIVVPRREVFEDGDGAIVAMHAAVKADPARKPELMKMLQMWSAAGGVFLEGIKFYAFEN 218
Query: 478 PGVPDLSEY-LEVRYSAKCPAL--PSD--LSGDTFSHVFGTKSSFLENLLLERKIKGPSW 532
VP ++ ++VRY P L P+ SG T+ +FG S LER+IKGP W
Sbjct: 219 RDVPHGEQWVIKVRYPGHLPVLQPPASGCFSGKTYCAIFGANQS-----TLERRIKGPGW 273
Query: 533 LEF--PEAEKFPSRISWCKYEV 552
+ P ++ ++ +WCK EV
Sbjct: 274 MGICSPTRVEYGNQTTWCKVEV 295
Score = 166 (63.5 bits), Expect = 1.1e-54, Sum P(6) = 1.1e-54
Identities = 45/111 (40%), Positives = 63/111 (56%)
Query: 715 NLSSDLLMQYDIR-QKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLV 773
+L ++ +Y+I A+KLTANSMYGCLGF SRF+AQPLA L+TA+GR IL +T L
Sbjct: 623 SLYPSIIQEYNICFTTAIKLTANSMYGCLGFGASRFYAQPLAELITAQGRSILSSTVDLE 682
Query: 774 ENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDG 824
I + + + + D VFK +K K Y ++L+ DG
Sbjct: 683 ARALGARIKREVNKRYKLLEI-ELDGVFKSILLLKK---KKYAAVKLEPDG 729
Score = 114 (45.2 bits), Expect = 1.1e-54, Sum P(6) = 1.1e-54
Identities = 21/27 (77%), Positives = 24/27 (88%)
Query: 1003 IHPVVTRLLEPIEGTDAVRIAECLGLD 1029
IHPVV+RL+ PIEGTDA IA+CLGLD
Sbjct: 838 IHPVVSRLVSPIEGTDAAHIADCLGLD 864
Score = 68 (29.0 bits), Expect = 3.0e-55, Sum P(5) = 3.0e-55
Identities = 18/62 (29%), Positives = 33/62 (53%)
Query: 46 RAKRQKIDKTNKF---AAFQKLKDLKGQGVKHK--YEFTADENVYEEVSEKEYTERVLKR 100
R++RQ + + A ++L+ + G+K YE + VY+ V E++Y E V KR
Sbjct: 3 RSRRQPVQSSAAVKAKGALEQLRAARDGGLKRALAYEVKEEAAVYDVVDEQQYAEIVKKR 62
Query: 101 QE 102
++
Sbjct: 63 RD 64
Score = 50 (22.7 bits), Expect = 3.0e-55, Sum P(5) = 3.0e-55
Identities = 20/58 (34%), Positives = 28/58 (48%)
Query: 1090 GVVFVLDECINPE-CKVPP-------YTYLPH-LINKLSQDMNKYIVKYYEGWLKCED 1138
GV VL E I PE PP T P LIN++ + + +YY+G L+ +D
Sbjct: 898 GVDDVLKEAIMPEQLLTPPDALGDPTATVSPAALINQVLLRAREAVARYYDGVLRPDD 955
>UNIPROTKB|I3LGG7 [details] [associations]
symbol:LOC100627036 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR012337 Pfam:PF03104 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 SUPFAM:SSF53098 GO:GO:0003887 TIGRFAMs:TIGR00592
GeneTree:ENSGT00550000074891 EMBL:CU207412 EMBL:FP339588
Ensembl:ENSSSCT00000027046 Uniprot:I3LGG7
Length = 313
Score = 548 (198.0 bits), Expect = 7.7e-52, P = 7.7e-52
Identities = 117/253 (46%), Positives = 161/253 (63%)
Query: 347 WEAIQTEPST-SEPQVHSRTADDS-LPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFG 404
W+ Q + S+ S P+V D S LPL + ++VF+ ++LDA+ED Y QPG V+LFG
Sbjct: 61 WDIDQEDDSSFSAPEVQ---VDSSHLPLVKGADGEQVFQFYWLDAYEDQYSQPGVVFLFG 117
Query: 405 KVFVKENNSHSSCCVIVQNIDRKIYLLPRSEH--LKT-KE---PVSIAQVYSEFDQ-IAT 457
KV+++ +H SCCV+V+NI+R +Y LPR L T KE PV++ VY EFD+ IA
Sbjct: 118 KVWIELAETHVSCCVMVKNIERTLYFLPRETKIDLNTGKEKGTPVTMKDVYDEFDEKIAA 177
Query: 458 QYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKSSF 517
+YKI+ FKS+ +EK YAF +P VP+ SEYLEVRYSA+ P LP DL G+TFSHVFGT +S
Sbjct: 178 KYKIMKFKSKPVEKNYAFEIPDVPEKSEYLEVRYSAEMPQLPQDLKGETFSHVFGTNTSS 237
Query: 518 LENLLLERKIKGPSWLEFPEAEKFPSRISWCKYEVQCNQMEKIRITNVCGN----VLS-- 571
LE L+ RKIKGP WLE + ISWCK+E + + + + G V+S
Sbjct: 238 LELFLMNRKIKGPCWLEVKNPQLLNQPISWCKFEAMALKPDLVNVIKDVGPPPLVVMSLS 297
Query: 572 -RTLMGGRSERNE 583
+T+ ++ NE
Sbjct: 298 MKTMQNAKTHENE 310
>UNIPROTKB|Q7RBM5 [details] [associations]
symbol:PY06115 "DNA polymerase" species:73239 "Plasmodium
yoelii yoelii" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0005658
"alpha DNA polymerase:primase complex" evidence=IBA] [GO:0006260
"DNA replication" evidence=IBA] [GO:0006303 "double-strand break
repair via nonhomologous end joining" evidence=IBA] [GO:0008408
"3'-5' exonuclease activity" evidence=IBA] [GO:0019985 "translesion
synthesis" evidence=IBA] [GO:0006297 "nucleotide-excision repair,
DNA gap filling" evidence=IBA] InterPro:IPR004578
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0006303 GO:GO:0003887 KO:K02320
eggNOG:COG0417 GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0005658 TIGRFAMs:TIGR00592 EMBL:AABL01002033
RefSeq:XP_726706.1 ProteinModelPortal:Q7RBM5 STRING:Q7RBM5
GeneID:3792046 KEGG:pyo:PY06115 EuPathDB:PlasmoDB:PY06115
Uniprot:Q7RBM5
Length = 906
Score = 300 (110.7 bits), Expect = 1.6e-39, Sum P(3) = 1.6e-39
Identities = 76/224 (33%), Positives = 127/224 (56%)
Query: 672 QDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALM-KQPNLSS-DLLMQYDIRQK 729
Q DI+ + +Y + + GILPS +K+LVE R +K L+ + N +LL+ ++
Sbjct: 197 QVGDISNI-DYFDKTK--PGILPSILKQLVEKRAFIKKLIASEKNKEKKELLL---VQSL 250
Query: 730 ALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN-LNYEVIYGDTDSL 788
++KL +NS+YGCLG ++RF+A+ +A+ +T KGR +L +TK VE N +V+YGDTDS+
Sbjct: 251 SIKLISNSIYGCLGNTHNRFYAKYIASYITQKGRNLLQHTKFKVEKEFNLKVVYGDTDSI 310
Query: 789 MI-----SCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVXXXXXXXXXXXXXXXXXX 843
MI S +VN+Y K+ + IK+ NK YK+LELD++ +
Sbjct: 311 MIDTGIKSSDVNNYKESLKLAHTIKNNINKNYKKLELDLECIFSKLLLLKKKKYACAKVI 370
Query: 844 XXXNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSY 887
GK E+KG++ ++RD+ +++ G ++ I + Y
Sbjct: 371 DPNLGKY--EYEMKGINFIKRDFCKISKLIGNEMLRIIFSNKEY 412
Score = 241 (89.9 bits), Expect = 1.3e-33, Sum P(2) = 1.3e-33
Identities = 85/300 (28%), Positives = 144/300 (48%)
Query: 786 DSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVXXXXXXXXXXXXXXXXXXXX 845
D+ + S +VN+Y K+ + IK+ NK YK+LELD++ +
Sbjct: 313 DTGIKSSDVNNYKESLKLAHTIKNNINKNYKKLELDLECIFSKLLLLKKKKYACAKVIDP 372
Query: 846 XNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSY-------TDYSL---DD- 894
GK E+KG++ ++RD+ +++ G ++ I + Y ++ SL DD
Sbjct: 373 NLGKY--EYEMKGINFIKRDFCKISKLIGNEMLRIIFSNKEYKPSQPNSSNTSLSHTDDL 430
Query: 895 RLQN-----IHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLN 949
+QN IHE+++ + + N L ITK+LTK EY ++ +L HV VA R+
Sbjct: 431 SIQNDLSEQIHEYLRSVYQRIQNDEFDLEHYVITKKLTKNVNEYQEKNSLGHVLVAERMI 490
Query: 950 NTNSKKLKQGDTISYIIC--ED-------GTSEAATQRA-YNIEELKNNSKLKIDVNYYL 999
+ + I Y +C ED G + + ++I E+K + LKID +YY+
Sbjct: 491 K-DGYNVCVNKEIQYCVCRNEDALKFYNKGNEKLNSSLCCFSISEIKKYN-LKIDKDYYI 548
Query: 1000 SQQIHPVVTRLLEPIEGTDAVRIAECLGLDTSLYRSQIKESIQQS--EENILGV-GEAEE 1056
QI + RL + IEGT+ +I+ C + ++ + E I +S E N+L + E EE
Sbjct: 549 RNQILLPINRLCQYIEGTNIEKISSCFNI-YNVKEIKSDEQIDESYLETNVLSLLSETEE 607
Score = 219 (82.2 bits), Expect = 1.6e-39, Sum P(3) = 1.6e-39
Identities = 50/126 (39%), Positives = 71/126 (56%)
Query: 550 YEVQ--CNQM---EKIR-ITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYX 603
YE+ CN + EK R +T + G + +R+L+ SE E+ LLH +H+K Y+ P
Sbjct: 40 YEIYNVCNVLQLVEKSRDLTKLSGYIWARSLLSYTSECVEYFLLHEYHKKKYITP----- 94
Query: 604 XXXXXXXXXXXXXXXXXRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICF 663
+ A Y GGLVLEP G+YD +++ +DFNSLYPSII EYNICF
Sbjct: 95 -LVAKKKPKIENDSNKSKNTAKYLGGLVLEPLCGYYDTYVLYLDFNSLYPSIIIEYNICF 153
Query: 664 TTIPVR 669
+T ++
Sbjct: 154 STFNMK 159
Score = 44 (20.5 bits), Expect = 1.6e-39, Sum P(3) = 1.6e-39
Identities = 31/135 (22%), Positives = 60/135 (44%)
Query: 1111 LPHLI--NKLSQDMNKYIVKYYEGWLKCEDPGCSDLTRRCPLGLKTRLCTTCHKYKLHRV 1168
L H + KL++++N+Y K G + + D C + + + C C +
Sbjct: 458 LEHYVITKKLTKNVNEYQEKNSLGHVLVAERMIKDGYNVC-VNKEIQYCV-CRNEDALKF 515
Query: 1169 YTE--LQLYQQLSFFHYICDITKALTKSDTPSIKFDSETYMGYCKMKQHVERF-LE--SS 1223
Y + +L L F I +I K K D ++ + ++ Q++E +E SS
Sbjct: 516 YNKGNEKLNSSLCCFS-ISEIKKYNLKIDK-DYYIRNQILLPINRLCQYIEGTNIEKISS 573
Query: 1224 AYNIVDLKKLFSCEE 1238
+NI ++K++ S E+
Sbjct: 574 CFNIYNVKEIKSDEQ 588
Score = 43 (20.2 bits), Expect = 2.0e-39, Sum P(3) = 2.0e-39
Identities = 16/91 (17%), Positives = 40/91 (43%)
Query: 968 EDGTSEAATQRAYNIEELKNNSKLKIDVNYYLSQQIHPVVTRLLE-PIEGTDAVRIAECL 1026
+ G +AA + A N E N K + ++ + T++ E P E + ++ C+
Sbjct: 735 QKGDVDAANE-AGNDENKAENGTNKAENGANKAENENKTNTQINEEPEEYATDINVSVCI 793
Query: 1027 GLDTSLYRSQIKESIQQSEENILGVGEAEEV 1057
G ++ + I+ +++N+ + + +
Sbjct: 794 GDGYKIHILNNNQLIKNNKKNVFKIESYDNI 824
Score = 41 (19.5 bits), Expect = 4.2e-21, Sum P(3) = 4.2e-21
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 649 NSLYPSIIQEYNICFTTIPVRMLQDS-DITTLCEYL 683
NS SI + YN+C +++++ S D+T L Y+
Sbjct: 33 NSQIFSIYEIYNVCNV---LQLVEKSRDLTKLSGYI 65
>UNIPROTKB|Q9LRE6 [details] [associations]
symbol:POLD1 "DNA polymerase delta catalytic subunit"
species:39947 "Oryza sativa Japonica Group" [GO:0000084 "S phase of
mitotic cell cycle" evidence=IBA] [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IBA] [GO:0005634 "nucleus"
evidence=IBA] [GO:0006287 "base-excision repair, gap-filling"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0007346 "regulation of mitotic cell
cycle" evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=IBA] [GO:0043625 "delta DNA polymerase complex"
evidence=IBA] [GO:0045004 "DNA replication proofreading"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0007346 GO:GO:0000166 GO:GO:0046872
GO:GO:0003677 EMBL:DP000010 EMBL:AP008217 GO:GO:0051539
SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408 GO:GO:0043137
GO:GO:0003887 GO:GO:0006297 eggNOG:COG0417 GO:GO:0045004
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0006287
TIGRFAMs:TIGR00592 KO:K02327 InterPro:IPR025687 Pfam:PF14260
HOGENOM:HOG000036616 OMA:MIEQTKQ GO:GO:0043625 EMBL:AB037899
EMBL:AC128644 EMBL:AC134047 RefSeq:NP_001067405.1 UniGene:Os.3738
ProteinModelPortal:Q9LRE6 STRING:Q9LRE6 PRIDE:Q9LRE6
EnsemblPlants:LOC_Os11g08330.1 GeneID:4349968
KEGG:dosa:Os11t0186400-00 KEGG:osa:4349968 Gramene:Q9LRE6
ProtClustDB:CLSN2698457 Uniprot:Q9LRE6
Length = 1105
Score = 401 (146.2 bits), Expect = 1.1e-32, Sum P(3) = 1.1e-32
Identities = 126/409 (30%), Positives = 205/409 (50%)
Query: 626 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT-IP---VRML----QDSDIT 677
+ G VLE + GFY+K I +DF SLYPSI+ YN+C+ T +P R L + + T
Sbjct: 587 FEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVPPEDARKLNLPPESVNKT 646
Query: 678 TLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANS 737
E + V GILP +++L+ +R++ KA +K+ + + D RQ ALK++ANS
Sbjct: 647 PSGETFVKPDVQKGILPEILEELLAARKRAKADLKEAKDPFERAV-LDGRQLALKISANS 705
Query: 738 MYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENL---------NYEVIYGDTDSL 788
+YG G + +++ VT+ GR+++ +TK LVE+ N EVIYGDTDS+
Sbjct: 706 VYGFTGATVGQLPCLEISSSVTSYGRQMIEHTKKLVEDKFTTLGGYEHNAEVIYGDTDSV 765
Query: 789 MISCNVNDYDSVFKIGNQIKSECNKLY-KQLELDIDGVXXXXXXXXXXXXXXXXXXXXXN 847
M+ V+ + K+G + + + K ++L+ + + N
Sbjct: 766 MVQFGVSTVEDAMKLGREAADYISGTFIKPIKLEFEKIYFPYLLISKKRYAGLYWT---N 822
Query: 848 GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIR 907
+ + KG++ VRRD L K ++++ L + D + +Q ++K
Sbjct: 823 PEKFDKMDTKGIETVRRDNCLLV----KNLVTECL-HKILVDRDVPGAVQ----YVKNTI 873
Query: 908 TDLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQ-GDTISYII 966
+DL V L+LL ITK LTK E+Y + A HV++A R+ ++ GD + Y+I
Sbjct: 874 SDLLMNRVDLSLLVITKGLTKTGEDYAVKAA--HVELAERMRKRDAATAPTVGDRVPYVI 931
Query: 967 CEDGTSEAATQRAYN-IEELKNNSKLKIDVNYYLSQQIHPVVTRLLEPI 1014
+ A +R+ + I L NN + ID YYL QI + R+ EPI
Sbjct: 932 IKAAKGAKAYERSEDPIYVLDNN--IPIDPQYYLENQISKPLLRIFEPI 978
Score = 56 (24.8 bits), Expect = 1.1e-32, Sum P(3) = 1.1e-32
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 517 FLENLLLERKIKGPSWLEFPEAEKF--PSRI-SWCKYEVQC 554
F +++ I G +W+E P A K+ +RI S+C+ E+ C
Sbjct: 255 FALRFMIDCNIVGGNWIEVP-AGKYMKAARIMSYCQLELDC 294
Score = 39 (18.8 bits), Expect = 1.1e-32, Sum P(3) = 1.1e-32
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 482 DLSEYLEVRYSA-KCPALPSDLS 503
D E L R S + PALP+DL+
Sbjct: 74 DRDEALASRLSRWRRPALPADLA 96
>ZFIN|ZDB-GENE-060429-1 [details] [associations]
symbol:pold1 "polymerase (DNA directed), delta 1,
catalytic subunit" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;IBA] [GO:0006260 "DNA replication" evidence=IEA;IMP]
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0007346 "regulation of mitotic cell cycle"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
[GO:0043137 "DNA replication, removal of RNA primer" evidence=IBA]
[GO:0045004 "DNA replication proofreading" evidence=IBA]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IBA] [GO:0043625 "delta DNA polymerase complex"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0006287
"base-excision repair, gap-filling" evidence=IBA] [GO:0000084 "S
phase of mitotic cell cycle" evidence=IBA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] InterPro:IPR004578
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 ZFIN:ZDB-GENE-060429-1
GO:GO:0007346 GO:GO:0000166 GO:GO:0003677 SUPFAM:SSF53098
GO:GO:0000084 GO:GO:0008408 GO:GO:0043137 GO:GO:0003887
GO:GO:0006297 GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0006287 TIGRFAMs:TIGR00592 CTD:5424 HOVERGEN:HBG051395
KO:K02327 InterPro:IPR025687 Pfam:PF14260 GO:GO:0043625
EMBL:AY883095 IPI:IPI00631610 RefSeq:NP_001034899.1
UniGene:Dr.49022 ProteinModelPortal:Q2KNE0 STRING:Q2KNE0
GeneID:556456 KEGG:dre:556456 InParanoid:Q2KNE0 NextBio:20881495
ArrayExpress:Q2KNE0 Uniprot:Q2KNE0
Length = 1105
Score = 394 (143.8 bits), Expect = 4.2e-32, Sum P(2) = 4.2e-32
Identities = 148/546 (27%), Positives = 245/546 (44%)
Query: 626 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI----PVRML---QDSDITT 678
Y+G V+EP+KG+Y I +DF+SLYPSI+ +N+C+TT+ + L D I T
Sbjct: 585 YTGATVIEPEKGYYSVPIATLDFSSLYPSIMMAHNLCYTTLLQKSQIEKLGLGPDDFIKT 644
Query: 679 LC-EYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPN--LSSDLLMQYDIRQKALKLTA 735
+ + V G+LP ++ L+ +R++ KA +K+ +L D RQ ALK++A
Sbjct: 645 PTGDLFVKSSVRKGLLPEILENLLSARKRAKAELKKETDPFKKQVL---DGRQLALKISA 701
Query: 736 NSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENL-----NYE----VIYGDTD 786
NS+YG G + ++ VT GR+++ TK LVE+ Y+ VIYGDTD
Sbjct: 702 NSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEQTKQLVESRYTLDNGYQADAKVIYGDTD 761
Query: 787 SLMISCNVNDYDSVFKIGNQIKSECNKLY-KQLELDIDGVXX--XXXXXXXXXXXXXXXX 843
S+M+ V G + + + ++L+ + V
Sbjct: 762 SVMVKLGVATVQEAMNQGKEAAEWVSSHFVPPIKLEFEKVYYPYLLINKKRYAGLYFSSS 821
Query: 844 XXXNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHM 903
+ KM C KG++ VRRD L + + IL D D + H
Sbjct: 822 AEHHDKMDC----KGIETVRRDNCPLVANLINTCLQNIL-----IDRDPDGAVT----HA 868
Query: 904 KKIRTDLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQ-GDTI 962
K++ +DL + ++ L ITK+LT+ +EY ++A HV++A R+ ++ GD +
Sbjct: 869 KEVISDLLCNRIDISQLVITKELTRTAQEYAGKQA--HVELAERMRKRDAGSAPNLGDRV 926
Query: 963 SYIICEDGTSEAATQRAYN-IEELKNNSKLKIDVNYYLSQQIHPVVTRLLEPIEGTDAVR 1021
Y+I + AA ++ + I L+NN + ID YYL QQ+ + R+ EPI G
Sbjct: 927 PYVIIKAAKGVAAYMKSEDPIYVLENN--IPIDTQYYLEQQLSKPLLRIFEPILGESKAE 984
Query: 1022 IAECLGLDT---SLYRSQIKE--SIQQSEENILG---VGEAEEVKYQFCDKFEFTCMNPS 1073
G T ++ S++ + Q +G V + + FC K E
Sbjct: 985 SVLLKGDHTRCKTVLTSRVGGLMAFAQKRSTCIGCRAVLKTDVAVCDFCKKRESELYQKE 1044
Query: 1074 CKQVNTVEAP-TRLSTH-----GVVFVLDECINPECKVPPYTYLPHLINKLSQDMNKYIV 1127
++T+E +RL T G + C + +C P Y+ + K D K +
Sbjct: 1045 IAHLSTLEEKFSRLWTQCQRCQGSLHEDVLCTSRDC---PIFYMRKKVQKDLDDQEKLVS 1101
Query: 1128 KYYEGW 1133
++ GW
Sbjct: 1102 RF--GW 1105
Score = 49 (22.3 bits), Expect = 4.2e-32, Sum P(2) = 4.2e-32
Identities = 13/56 (23%), Positives = 24/56 (42%)
Query: 511 FGTKSSFLENLLLERKIKGPSWLEFPEAE--------------KFPSRISWCKYEV 552
F F +++ + G W+E P+ + K+P ++S C+YEV
Sbjct: 237 FEANIDFEIRFMVDSNVVGCCWIELPKGKYQLREERREGQTDSKYPGKVSLCQYEV 292
>UNIPROTKB|Q8TSB3 [details] [associations]
symbol:MA_0885 "DNA polymerase" species:188937
"Methanosarcina acetivorans C2A" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IBA] [GO:0005694 "chromosome"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0005694
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098
GO:GO:0008408 GO:GO:0003887 GO:GO:0006297 EMBL:AE010299
GenomeReviews:AE010299_GR eggNOG:COG0417 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 OMA:RSFRPYF HSSP:Q56366
KO:K02319 RefSeq:NP_615844.1 ProteinModelPortal:Q8TSB3
GeneID:1472777 KEGG:mac:MA0885 ProtClustDB:CLSK568782
BioCyc:MACE188937:GI2O-954-MONOMER Uniprot:Q8TSB3
Length = 937
Score = 249 (92.7 bits), Expect = 6.2e-30, Sum P(2) = 6.2e-30
Identities = 74/266 (27%), Positives = 133/266 (50%)
Query: 529 GPSWLEFPEAEKFPSRISWCKYEVQCNQMEK-IRITNVCGNVLSRTLMGGRSERNEFLLL 587
G + +F + + S ++ + ++ ++K I + V G++L + GG++ E LLL
Sbjct: 374 GDKFRKFVDYARRDSELA-LELVLELRLLDKYIALAQVSGSLLQEIVDGGQTSMVETLLL 432
Query: 588 HAFHEKSYVLPDKQYXXXXXXXXXXXXXXXXXXRKKAAYSGGLVLEPKKGFYDKFIILMD 647
F K V+ K + GG VLEPKKG + +IL D
Sbjct: 433 REFGLKDRVILPKP----------GDELSAERYDMSSDLKGGEVLEPKKGLLENVLIL-D 481
Query: 648 FNSLYPSIIQEYNICFTTIPVRMLQDSDIT---TLCEYLPEHQVDTGILPSEIKKLVESR 704
+ SLYP+I+ +N+C+TT+ R D + E++P +V GI+PS ++ L+ R
Sbjct: 482 YKSLYPTIMMAHNLCYTTVVTRDRPDGKTIKPPSGGEFVPP-EVFRGIVPSILEDLLNKR 540
Query: 705 RQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGRE 764
K MK+ + ++ + D Q A+K+ NS YG G+ +R ++ LA VT+ GR
Sbjct: 541 GDTKKRMKRTSDENEHRV-LDATQLAIKILLNSFYGYSGYARARLYSLTLANAVTSFGRS 599
Query: 765 ILLNTKSLVENLNYEVIYGDTDSLMI 790
+LNT+ L+ +++ ++ +L++
Sbjct: 600 NILNTRDLINGRIGKIVLRNSAALLL 625
Score = 176 (67.0 bits), Expect = 6.2e-30, Sum P(2) = 6.2e-30
Identities = 60/237 (25%), Positives = 108/237 (45%)
Query: 780 VIYGDTDSLMISCNVN---DYDSVFKIGNQIKSECN-KLYKQLELDIDGVXXXXXXXXXX 835
V YGDTDS+ + C + V +GN++ + L +EL+ + V
Sbjct: 642 VAYGDTDSVFVHCKAKGDLSLEEVSLVGNRLSEIVSASLPDPMELEFESVAKRALLIAKK 701
Query: 836 XXXXXXXXXXXNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDR 895
+G ++KG++ VRRDW +L S V+ +L E D +++
Sbjct: 702 RYALWLFEPRNSG-WENKIKVKGMETVRRDWCELTSITLNRVLEFVLIEGD-VDKAVE-H 758
Query: 896 LQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKK 955
++ + ++ + D G + +L T+ LT+ + Y +++ PH+ VA L
Sbjct: 759 VRKVVSDVRNLDPGKDAGIIEKLVL--TRTLTRKADSYKNKQ--PHLTVAENLKKRTGIM 814
Query: 956 LKQGDTISYIICEDGTSEAATQRAYNIEELKNNSKLKIDVNYYLSQQIHPVVTRLLE 1012
G I ++I G RA + + ++ N+ + IDV+YY+ +QI P V R+LE
Sbjct: 815 PSIGTRIPFVITA-GKG-LFVDRAEDPDYVRENN-VPIDVDYYVKKQILPPVERILE 868
>FB|FBgn0263600 [details] [associations]
symbol:DNApol-delta "DNA-polymerase-delta" species:7227
"Drosophila melanogaster" [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=ISS;NAS;IDA] [GO:0043625 "delta DNA polymerase
complex" evidence=ISS;IDA] [GO:0008296 "3'-5'-exodeoxyribonuclease
activity" evidence=IDA] [GO:0006273 "lagging strand elongation"
evidence=NAS] [GO:0006272 "leading strand elongation" evidence=NAS]
[GO:0008310 "single-stranded DNA specific 3'-5'
exodeoxyribonuclease activity" evidence=NAS] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005875
"microtubule associated complex" evidence=IDA] [GO:0006974
"response to DNA damage stimulus" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0005875 EMBL:AE014296
GO:GO:0022008 GO:GO:0000166 GO:GO:0046872 GO:GO:0003677
GO:GO:0006260 GO:GO:0006974 GO:GO:0051539 SUPFAM:SSF53098
GO:GO:0003887 eggNOG:COG0417 GO:GO:0008296 Gene3D:3.90.1600.10
InterPro:IPR023211 TIGRFAMs:TIGR00592 KO:K02327 InterPro:IPR025687
Pfam:PF14260 GeneTree:ENSGT00560000077365 GO:GO:0043625 EMBL:X88928
EMBL:AY113526 RefSeq:NP_524099.2 UniGene:Dm.2838
ProteinModelPortal:P54358 SMR:P54358 DIP:DIP-22360N IntAct:P54358
MINT:MINT-877114 STRING:P54358 PaxDb:P54358
EnsemblMetazoa:FBtr0075522 GeneID:39746 KEGG:dme:Dmel_CG5949
CTD:39746 FlyBase:FBgn0263600 InParanoid:P54358 OMA:RSFRPYF
OrthoDB:EOG4RFJ7F PhylomeDB:P54358 GenomeRNAi:39746 NextBio:815171
Bgee:P54358 GermOnline:CG5949 Uniprot:P54358
Length = 1092
Score = 375 (137.1 bits), Expect = 4.1e-29, Sum P(2) = 4.1e-29
Identities = 124/422 (29%), Positives = 208/422 (49%)
Query: 626 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI-------PVRM---LQDSD 675
Y G V+EPK+G+Y I +DF SLYPSI+ +N+C+TT+ +R LQD
Sbjct: 566 YEGATVIEPKRGYYADPISTLDFASLYPSIMMAHNLCYTTLVLGGTREKLRQQENLQDDQ 625
Query: 676 I--TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQ--YDIRQKAL 731
+ T Y + +V G+LP ++ L+ +R++ K +K + +D + D RQ AL
Sbjct: 626 VERTPANNYFVKSEVRRGLLPEILESLLAARKRAKNDLK---VETDPFKRKVLDGRQLAL 682
Query: 732 KLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN----LN-YE----VIY 782
K++ANS+YG G + ++ VTA GR ++ TK+ VE+ N YE VIY
Sbjct: 683 KISANSVYGFTGAQVGKLPCLEISGSVTAYGRTMIEMTKNEVESHYTQANGYENNAVVIY 742
Query: 783 GDTDSLMISCNVNDYDSVFKIGNQIKS-ECNKLYKQLELDIDGVXXXXXXXXXXXXXXXX 841
GDTDS+M++ V + ++G + +K ++L+ + V
Sbjct: 743 GDTDSVMVNFGVKTLERSMELGREAAELVSSKFVHPIKLEFEKVYYPYLLINKKRYAGLY 802
Query: 842 XXXXXNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHE 901
+ + KG++ VRRD S L + + ++L E+ D ++
Sbjct: 803 FTRPDTYDKM---DCKGIETVRRDNSPLVANLMNSCLQKLLIERD-PDGAV--------A 850
Query: 902 HMKKIRTDLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKL-KQGD 960
++K++ DL + ++ L ITK+L K +Y ++A HV++A ++ + K GD
Sbjct: 851 YVKQVIADLLCNRIDISHLVITKELAKT--DYAAKQA--HVELAAKMKKRDPGTAPKLGD 906
Query: 961 TISYIICEDGTSEAATQRAYNIEELKNNSKLKIDVNYYLSQQIHPVVTRLLEPIEGTDAV 1020
+ Y+IC + A Q+A + + NS + ID YYL QQ+ + R+ EPI G +A
Sbjct: 907 RVPYVICAAAKNTPAYQKAEDPLYVLENS-VPIDATYYLEQQLSKPLLRIFEPILGDNAE 965
Query: 1021 RI 1022
I
Sbjct: 966 SI 967
Score = 40 (19.1 bits), Expect = 4.1e-29, Sum P(2) = 4.1e-29
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 407 FVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKTK 440
FV+E + + N D YLL R+ HLK +
Sbjct: 368 FVREVDPDILTGYNINNFDFP-YLLNRAAHLKVR 400
>WB|WBGene00008645 [details] [associations]
symbol:F10C2.4 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0051301 "cell division" evidence=IMP] [GO:0000910
"cytokinesis" evidence=IMP] [GO:0035188 "hatching" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0009792 GO:GO:0035188 GO:GO:0006898
GO:GO:0007346 GO:GO:0002119 GO:GO:0000166 GO:GO:0046872
GO:GO:0003677 GO:GO:0051539 GO:GO:0000910 SUPFAM:SSF53098
GO:GO:0000084 GO:GO:0008408 GO:GO:0043137 GO:GO:0003887
GO:GO:0006297 eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10
InterPro:IPR023211 GO:GO:0006287 TIGRFAMs:TIGR00592 KO:K02327
InterPro:IPR025687 Pfam:PF14260 EMBL:Z81497 PIR:T20698
RefSeq:NP_506017.1 ProteinModelPortal:P90829 SMR:P90829
STRING:P90829 PaxDb:P90829 EnsemblMetazoa:F10C2.4 GeneID:179652
KEGG:cel:CELE_F10C2.4 UCSC:F10C2.4 CTD:179652 WormBase:F10C2.4
GeneTree:ENSGT00560000077365 HOGENOM:HOG000036616 InParanoid:P90829
OMA:MIEQTKQ NextBio:906306 GO:GO:0043625 Uniprot:P90829
Length = 1081
Score = 360 (131.8 bits), Expect = 6.2e-29, P = 6.2e-29
Identities = 116/416 (27%), Positives = 206/416 (49%)
Query: 626 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI---PVRMLQDSDITTLC-E 681
Y G V++P +GFY++ I +DF SLYPSI+ +N+C+TT+ P + + I T +
Sbjct: 553 YEGATVIDPIRGFYNEPIATLDFASLYPSIMIAHNLCYTTLLKSPQGVENEDYIRTPSGQ 612
Query: 682 YLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGC 741
Y G+LP ++ ++ +R++ K MK M Y+ RQ ALK++ANS+YG
Sbjct: 613 YFATKSKRRGLLPEILEDILAARKRAKNDMKNEK-DEFKRMVYNGRQLALKISANSVYGF 671
Query: 742 LGFPNSRFFAQPLAALVTAKGREILLNTKSLVENL------------NYEVIYGDTDSLM 789
G + ++ VTA GR+++ TK VE + + +VIYGDTDS+M
Sbjct: 672 TGATVGKLPCLEISQSVTAFGRKMIDMTKLEVERIYKKGALDGKCPADAKVIYGDTDSVM 731
Query: 790 ISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVXXXXXXXXXXXXXXXXXXXXXNG 848
+ V +IG E +K++ ++L+ + V
Sbjct: 732 VKFGVETVAQAMEIGLDAAKEVSKIFTPPIKLEFEKVYSPYLLINKKRYAGLYFT---KP 788
Query: 849 KMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRT 908
+ + KG++ VRRD L ++ + ++L E+ D+ Q+ + K+ +
Sbjct: 789 DVHDKMDCKGLETVRRDNCPLVAKVLGVCLEKLLIER--------DQ-QSALDFAKRTIS 839
Query: 909 DLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQ-GDTISYIIC 967
DL + ++LL I+K+LTK+ ++Y ++A HV++A R+ ++ + GD + Y+
Sbjct: 840 DLLCNKIDISLLIISKELTKSGDKYQAKQA--HVELAARMKKRDAGSAPRLGDRVPYVFV 897
Query: 968 EDGTSEAATQRAYNIE-ELKNNSKLKIDVNYYLSQQIHPVVTRLLEPIEGTDAVRI 1022
+ A +RA + L+NN + +D +YL+ Q+ + R+ EPI G A +I
Sbjct: 898 AAAKNVPAYERAEDPTFVLQNN--IPLDTKHYLTNQLAKPLARIFEPILGDRAEKI 951
>UNIPROTKB|P90829 [details] [associations]
symbol:F10C2.4 "DNA polymerase delta catalytic subunit"
species:6239 "Caenorhabditis elegans" [GO:0045004 "DNA replication
proofreading" evidence=IBA] [GO:0043625 "delta DNA polymerase
complex" evidence=IBA] [GO:0043137 "DNA replication, removal of RNA
primer" evidence=IBA] [GO:0019985 "translesion synthesis"
evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0007346 "regulation of mitotic cell cycle"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0006287 "base-excision repair,
gap-filling" evidence=IBA] [GO:0005634 "nucleus" evidence=IBA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IBA]
[GO:0000084 "S phase of mitotic cell cycle" evidence=IBA]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0009792 GO:GO:0035188 GO:GO:0006898
GO:GO:0007346 GO:GO:0002119 GO:GO:0000166 GO:GO:0046872
GO:GO:0003677 GO:GO:0051539 GO:GO:0000910 SUPFAM:SSF53098
GO:GO:0000084 GO:GO:0008408 GO:GO:0043137 GO:GO:0003887
GO:GO:0006297 eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10
InterPro:IPR023211 GO:GO:0006287 TIGRFAMs:TIGR00592 KO:K02327
InterPro:IPR025687 Pfam:PF14260 EMBL:Z81497 PIR:T20698
RefSeq:NP_506017.1 ProteinModelPortal:P90829 SMR:P90829
STRING:P90829 PaxDb:P90829 EnsemblMetazoa:F10C2.4 GeneID:179652
KEGG:cel:CELE_F10C2.4 UCSC:F10C2.4 CTD:179652 WormBase:F10C2.4
GeneTree:ENSGT00560000077365 HOGENOM:HOG000036616 InParanoid:P90829
OMA:MIEQTKQ NextBio:906306 GO:GO:0043625 Uniprot:P90829
Length = 1081
Score = 360 (131.8 bits), Expect = 6.2e-29, P = 6.2e-29
Identities = 116/416 (27%), Positives = 206/416 (49%)
Query: 626 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI---PVRMLQDSDITTLC-E 681
Y G V++P +GFY++ I +DF SLYPSI+ +N+C+TT+ P + + I T +
Sbjct: 553 YEGATVIDPIRGFYNEPIATLDFASLYPSIMIAHNLCYTTLLKSPQGVENEDYIRTPSGQ 612
Query: 682 YLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGC 741
Y G+LP ++ ++ +R++ K MK M Y+ RQ ALK++ANS+YG
Sbjct: 613 YFATKSKRRGLLPEILEDILAARKRAKNDMKNEK-DEFKRMVYNGRQLALKISANSVYGF 671
Query: 742 LGFPNSRFFAQPLAALVTAKGREILLNTKSLVENL------------NYEVIYGDTDSLM 789
G + ++ VTA GR+++ TK VE + + +VIYGDTDS+M
Sbjct: 672 TGATVGKLPCLEISQSVTAFGRKMIDMTKLEVERIYKKGALDGKCPADAKVIYGDTDSVM 731
Query: 790 ISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVXXXXXXXXXXXXXXXXXXXXXNG 848
+ V +IG E +K++ ++L+ + V
Sbjct: 732 VKFGVETVAQAMEIGLDAAKEVSKIFTPPIKLEFEKVYSPYLLINKKRYAGLYFT---KP 788
Query: 849 KMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRT 908
+ + KG++ VRRD L ++ + ++L E+ D+ Q+ + K+ +
Sbjct: 789 DVHDKMDCKGLETVRRDNCPLVAKVLGVCLEKLLIER--------DQ-QSALDFAKRTIS 839
Query: 909 DLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQ-GDTISYIIC 967
DL + ++LL I+K+LTK+ ++Y ++A HV++A R+ ++ + GD + Y+
Sbjct: 840 DLLCNKIDISLLIISKELTKSGDKYQAKQA--HVELAARMKKRDAGSAPRLGDRVPYVFV 897
Query: 968 EDGTSEAATQRAYNIE-ELKNNSKLKIDVNYYLSQQIHPVVTRLLEPIEGTDAVRI 1022
+ A +RA + L+NN + +D +YL+ Q+ + R+ EPI G A +I
Sbjct: 898 AAAKNVPAYERAEDPTFVLQNN--IPLDTKHYLTNQLAKPLARIFEPILGDRAEKI 951
>MGI|MGI:97741 [details] [associations]
symbol:Pold1 "polymerase (DNA directed), delta 1, catalytic
subunit" species:10090 "Mus musculus" [GO:0000084 "S phase of
mitotic cell cycle" evidence=ISO;IBA] [GO:0000109
"nucleotide-excision repair complex" evidence=ISO] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000731 "DNA synthesis
involved in DNA repair" evidence=ISO] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO]
[GO:0003682 "chromatin binding" evidence=ISO] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISO;IBA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IBA] [GO:0006139 "nucleobase-containing compound
metabolic process" evidence=IEA] [GO:0006260 "DNA replication"
evidence=ISO] [GO:0006261 "DNA-dependent DNA replication"
evidence=ISO] [GO:0006287 "base-excision repair, gap-filling"
evidence=ISO;IMP] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=ISO;IBA] [GO:0007346 "regulation of mitotic cell
cycle" evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IMP] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0043137 "DNA
replication, removal of RNA primer" evidence=IBA] [GO:0043625
"delta DNA polymerase complex" evidence=IBA] [GO:0045004 "DNA
replication proofreading" evidence=IMP] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 MGI:MGI:97741 GO:GO:0007346
GO:GO:0000166 GO:GO:0046872 GO:GO:0003677 GO:GO:0003682
GO:GO:0051539 SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408
GO:GO:0000731 GO:GO:0043137 GO:GO:0003887 GO:GO:0006297
eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0006287 TIGRFAMs:TIGR00592 CTD:5424 HOVERGEN:HBG051395
KO:K02327 InterPro:IPR025687 Pfam:PF14260
GeneTree:ENSGT00560000077365 HOGENOM:HOG000036616 OMA:MIEQTKQ
GO:GO:0043625 GO:GO:0000109 EMBL:Z21848 EMBL:AF024570 EMBL:AK167569
EMBL:AK168967 EMBL:AK169040 IPI:IPI00323143 PIR:S40243
RefSeq:NP_035261.3 UniGene:Mm.16549 ProteinModelPortal:P52431
SMR:P52431 IntAct:P52431 STRING:P52431 PhosphoSite:P52431
PaxDb:P52431 PRIDE:P52431 Ensembl:ENSMUST00000049343 GeneID:18971
KEGG:mmu:18971 InParanoid:Q3TFX6 OrthoDB:EOG4KWJS2 ChiTaRS:POLD1
NextBio:295320 PMAP-CutDB:P52431 Bgee:P52431 Genevestigator:P52431
GermOnline:ENSMUSG00000038644 Uniprot:P52431
Length = 1105
Score = 372 (136.0 bits), Expect = 6.8e-29, Sum P(3) = 6.8e-29
Identities = 123/414 (29%), Positives = 200/414 (48%)
Query: 626 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI--P-----VRMLQDSDITT 678
Y+G V+EP KG+YD I +DF+SLYPSI+ +N+C+TT+ P + + D I T
Sbjct: 579 YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLKPDEFIKT 638
Query: 679 LC--EYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQY-DIRQKALKLTA 735
E++ + V G+LP ++ L+ +R++ KA + Q + L Q D RQ ALK++A
Sbjct: 639 PTGDEFV-KSSVRKGLLPQILENLLSARKRAKAELAQE--TDPLRRQVLDGRQLALKVSA 695
Query: 736 NSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN---------LNYEVIYGDTD 786
NS+YG G + ++ VT GR+++ TK LVE+ N +V+YGDTD
Sbjct: 696 NSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVESKYTVENGYDANAKVVYGDTD 755
Query: 787 SLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVXX--XXXXXXXXXXXXXXXX 843
S+M V+ +G + + + + + L+ + V
Sbjct: 756 SVMCRFGVSSVAEAMSLGREAANWVSSHFPSPIRLEFEKVYFPYLLISKKRYAGLLFSSR 815
Query: 844 XXXNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHM 903
+ KM C KG++ VRRD L + + +IL D D + H
Sbjct: 816 SDAHDKMDC----KGLEAVRRDNCPLVANLVTSSLRRIL-----VDRDPDGAVA----HA 862
Query: 904 KKIRTDLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQ-GDTI 962
K + +DL + ++ L ITK+LT+A +Y ++A HV++A R+ + GD +
Sbjct: 863 KDVISDLLCNRIDISQLVITKELTRAAADYAGKQA--HVELAERMRKRDPGSAPSLGDRV 920
Query: 963 SYIICEDGTSEAATQRAYNIEELKNNSKLKIDVNYYLSQQIHPVVTRLLEPIEG 1016
Y+I AA ++ + + +S L ID YYL QQ+ + R+ EPI G
Sbjct: 921 PYVIIGAAKGVAAYMKSEDPLFVLEHS-LPIDTQYYLEQQLAKPLLRIFEPILG 973
Score = 49 (22.3 bits), Expect = 6.8e-29, Sum P(3) = 6.8e-29
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 1014 IEGTDAVRIAE-CLGLDTSLY-RSQIKESIQQSEENILGVGEAEEV 1057
++ D + + E L +DT Y Q+ + + + E ILG G AE V
Sbjct: 935 MKSEDPLFVLEHSLPIDTQYYLEQQLAKPLLRIFEPILGEGRAESV 980
Score = 40 (19.1 bits), Expect = 6.8e-29, Sum P(3) = 6.8e-29
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 522 LLERKIKGPSWLEFPEAE---KFPSRISWCKYEV 552
+++ I G +WLE P + + + + C+ EV
Sbjct: 253 MVDADIVGCNWLELPAGKYVRRAEKKATLCQLEV 286
>RGD|621839 [details] [associations]
symbol:Pold1 "polymerase (DNA directed), delta 1, catalytic
subunit" species:10116 "Rattus norvegicus" [GO:0000084 "S phase of
mitotic cell cycle" evidence=IEA;ISO;IBA] [GO:0000109
"nucleotide-excision repair complex" evidence=IEA;ISO] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000731 "DNA synthesis
involved in DNA repair" evidence=IEA;ISO] [GO:0003677 "DNA binding"
evidence=IEA;ISO] [GO:0003682 "chromatin binding" evidence=IEA;ISO]
[GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;ISO;IMP;IDA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=ISO;IBA] [GO:0006260
"DNA replication" evidence=ISO] [GO:0006261 "DNA-dependent DNA
replication" evidence=IMP;IDA] [GO:0006287 "base-excision repair,
gap-filling" evidence=IEA;ISO;IBA] [GO:0006297 "nucleotide-excision
repair, DNA gap filling" evidence=IEA;ISO;IBA] [GO:0007346
"regulation of mitotic cell cycle" evidence=IBA] [GO:0008408 "3'-5'
exonuclease activity" evidence=IEA;ISO;IBA] [GO:0019985
"translesion synthesis" evidence=IBA] [GO:0043137 "DNA replication,
removal of RNA primer" evidence=IBA] [GO:0043625 "delta DNA
polymerase complex" evidence=IC;IBA] [GO:0045004 "DNA replication
proofreading" evidence=IEA;ISO;IBA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 RGD:621839 GO:GO:0007346
GO:GO:0000166 GO:GO:0046872 GO:GO:0003677 GO:GO:0003682
GO:GO:0051539 SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408
GO:GO:0000731 GO:GO:0043137 GO:GO:0003887 GO:GO:0006297
eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0006287 TIGRFAMs:TIGR00592 CTD:5424 HOVERGEN:HBG051395
KO:K02327 InterPro:IPR025687 Pfam:PF14260 HOGENOM:HOG000036616
GO:GO:0043625 GO:GO:0000109 OrthoDB:EOG4KWJS2 EMBL:AJ222691
IPI:IPI00197951 RefSeq:NP_067694.1 UniGene:Rn.88690
ProteinModelPortal:O54747 STRING:O54747 PRIDE:O54747 GeneID:59294
KEGG:rno:59294 UCSC:RGD:621839 InParanoid:O54747 NextBio:611817
Genevestigator:O54747 GermOnline:ENSRNOG00000019681 Uniprot:O54747
Length = 1103
Score = 363 (132.8 bits), Expect = 6.5e-28, Sum P(3) = 6.5e-28
Identities = 121/414 (29%), Positives = 199/414 (48%)
Query: 626 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI--P-----VRMLQDSDITT 678
Y+G V+EP KG+YD I +DF+SLYPSI+ +N+C+TT+ P + + D I T
Sbjct: 577 YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLKPDEFIKT 636
Query: 679 LC--EYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQY-DIRQKALKLTA 735
E++ + V G+LP ++ L+ +R++ KA + Q + L Q D RQ ALK++
Sbjct: 637 PTGDEFV-KASVRKGLLPQILENLLSARKRAKAELAQE--TDPLRRQVLDGRQLALKVSP 693
Query: 736 NSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYEVIYGDTD 786
NS+YG G + ++ VT GR+++ TK LVE + N +V+YGDTD
Sbjct: 694 NSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVETKYTLENGYDANAKVVYGDTD 753
Query: 787 SLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVXX--XXXXXXXXXXXXXXXX 843
S+M V+ +G + + + + + L+ + V
Sbjct: 754 SVMCRFGVSSVAEAMSLGREAANWVSSHFPSPIRLEFEKVYFPYLLISKKRYAGLLFSSR 813
Query: 844 XXXNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHM 903
+ +M C KG++ VRRD L + + +IL D D + H
Sbjct: 814 SDAHDRMDC----KGLEAVRRDNCPLVANLVTSSLRRIL-----VDRDPDGAVA----HA 860
Query: 904 KKIRTDLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQ-GDTI 962
K + +DL + ++ L ITK+LT+A +Y ++A HV++A R+ + GD +
Sbjct: 861 KDVISDLLCNRIDISQLVITKELTRAAADYAGKQA--HVELAERMRKRDPGSAPNLGDRV 918
Query: 963 SYIICEDGTSEAATQRAYNIEELKNNSKLKIDVNYYLSQQIHPVVTRLLEPIEG 1016
Y+I AA ++ + + +S L ID YYL QQ+ + R+ EPI G
Sbjct: 919 PYVIIGAAKGVAAYMKSEDPLFVLEHS-LPIDTQYYLEQQLAKPLLRIFEPILG 971
Score = 49 (22.3 bits), Expect = 6.5e-28, Sum P(3) = 6.5e-28
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 1014 IEGTDAVRIAE-CLGLDTSLY-RSQIKESIQQSEENILGVGEAEEV 1057
++ D + + E L +DT Y Q+ + + + E ILG G AE V
Sbjct: 933 MKSEDPLFVLEHSLPIDTQYYLEQQLAKPLLRIFEPILGEGRAESV 978
Score = 40 (19.1 bits), Expect = 6.5e-28, Sum P(3) = 6.5e-28
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 522 LLERKIKGPSWLEFPEAE---KFPSRISWCKYEV 552
+++ I G +WLE P + + + + C+ EV
Sbjct: 251 MVDADIVGCNWLELPAGKYVRRAEKKATLCQLEV 284
>UNIPROTKB|O54747 [details] [associations]
symbol:Pold1 "DNA polymerase delta catalytic subunit"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 RGD:621839 GO:GO:0007346
GO:GO:0000166 GO:GO:0046872 GO:GO:0003677 GO:GO:0003682
GO:GO:0051539 SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408
GO:GO:0000731 GO:GO:0043137 GO:GO:0003887 GO:GO:0006297
eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0006287 TIGRFAMs:TIGR00592 CTD:5424 HOVERGEN:HBG051395
KO:K02327 InterPro:IPR025687 Pfam:PF14260 HOGENOM:HOG000036616
GO:GO:0043625 GO:GO:0000109 OrthoDB:EOG4KWJS2 EMBL:AJ222691
IPI:IPI00197951 RefSeq:NP_067694.1 UniGene:Rn.88690
ProteinModelPortal:O54747 STRING:O54747 PRIDE:O54747 GeneID:59294
KEGG:rno:59294 UCSC:RGD:621839 InParanoid:O54747 NextBio:611817
Genevestigator:O54747 GermOnline:ENSRNOG00000019681 Uniprot:O54747
Length = 1103
Score = 363 (132.8 bits), Expect = 6.5e-28, Sum P(3) = 6.5e-28
Identities = 121/414 (29%), Positives = 199/414 (48%)
Query: 626 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI--P-----VRMLQDSDITT 678
Y+G V+EP KG+YD I +DF+SLYPSI+ +N+C+TT+ P + + D I T
Sbjct: 577 YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLKPDEFIKT 636
Query: 679 LC--EYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQY-DIRQKALKLTA 735
E++ + V G+LP ++ L+ +R++ KA + Q + L Q D RQ ALK++
Sbjct: 637 PTGDEFV-KASVRKGLLPQILENLLSARKRAKAELAQE--TDPLRRQVLDGRQLALKVSP 693
Query: 736 NSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYEVIYGDTD 786
NS+YG G + ++ VT GR+++ TK LVE + N +V+YGDTD
Sbjct: 694 NSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVETKYTLENGYDANAKVVYGDTD 753
Query: 787 SLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVXX--XXXXXXXXXXXXXXXX 843
S+M V+ +G + + + + + L+ + V
Sbjct: 754 SVMCRFGVSSVAEAMSLGREAANWVSSHFPSPIRLEFEKVYFPYLLISKKRYAGLLFSSR 813
Query: 844 XXXNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHM 903
+ +M C KG++ VRRD L + + +IL D D + H
Sbjct: 814 SDAHDRMDC----KGLEAVRRDNCPLVANLVTSSLRRIL-----VDRDPDGAVA----HA 860
Query: 904 KKIRTDLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQ-GDTI 962
K + +DL + ++ L ITK+LT+A +Y ++A HV++A R+ + GD +
Sbjct: 861 KDVISDLLCNRIDISQLVITKELTRAAADYAGKQA--HVELAERMRKRDPGSAPNLGDRV 918
Query: 963 SYIICEDGTSEAATQRAYNIEELKNNSKLKIDVNYYLSQQIHPVVTRLLEPIEG 1016
Y+I AA ++ + + +S L ID YYL QQ+ + R+ EPI G
Sbjct: 919 PYVIIGAAKGVAAYMKSEDPLFVLEHS-LPIDTQYYLEQQLAKPLLRIFEPILG 971
Score = 49 (22.3 bits), Expect = 6.5e-28, Sum P(3) = 6.5e-28
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 1014 IEGTDAVRIAE-CLGLDTSLY-RSQIKESIQQSEENILGVGEAEEV 1057
++ D + + E L +DT Y Q+ + + + E ILG G AE V
Sbjct: 933 MKSEDPLFVLEHSLPIDTQYYLEQQLAKPLLRIFEPILGEGRAESV 978
Score = 40 (19.1 bits), Expect = 6.5e-28, Sum P(3) = 6.5e-28
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 522 LLERKIKGPSWLEFPEAE---KFPSRISWCKYEV 552
+++ I G +WLE P + + + + C+ EV
Sbjct: 251 MVDADIVGCNWLELPAGKYVRRAEKKATLCQLEV 284
>GENEDB_PFALCIPARUM|PF10_0165 [details] [associations]
symbol:PF10_0165 "DNA polymerase delta
catalytic subunit" species:5833 "Plasmodium falciparum" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0043625
"delta DNA polymerase complex" evidence=ISS] [GO:0008310
"single-stranded DNA specific 3'-5' exodeoxyribonuclease activity"
evidence=ISS] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 SUPFAM:SSF53098 EMBL:AE014185 GO:GO:0003887
Gene3D:3.90.1600.10 InterPro:IPR023211 TIGRFAMs:TIGR00592 KO:K02327
InterPro:IPR025687 Pfam:PF14260 HOGENOM:HOG000036616 OMA:MIEQTKQ
GO:GO:0043625 ProtClustDB:PTZ00166 GO:GO:0008310
RefSeq:XP_001347450.1 ProteinModelPortal:Q7KQL4
EnsemblProtists:PF10_0165:mRNA GeneID:810323 KEGG:pfa:PF10_0165
EuPathDB:PlasmoDB:PF3D7_1017000 Uniprot:Q7KQL4
Length = 1094
Score = 340 (124.7 bits), Expect = 1.0e-27, Sum P(2) = 1.0e-27
Identities = 129/420 (30%), Positives = 211/420 (50%)
Query: 626 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI-----PVRMLQDSDITTL- 679
Y G VLEP KG+Y + I +DF SLYPSI+ +N+C++T+ V LQ+ DITT+
Sbjct: 577 YEGATVLEPIKGYYIEPISTLDFASLYPSIMIAHNLCYSTLIKSNHEVSDLQNDDITTIQ 636
Query: 680 ----CEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTA 735
+++ ++ V GILP +++L+E+R++VK L+K ++ M + RQ ALK++A
Sbjct: 637 GKNNLKFVKKN-VKKGILPLIVEELIEARKKVKLLIKNEK-NNITKMVLNGRQLALKISA 694
Query: 736 NSMYGCLGFPNS-RFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNV 794
NS+YG G + + +A +T GR ++ TK VE+ + + +S +I
Sbjct: 695 NSVYGYTGASSGGQLPCLEVAVSITTLGRSMIEKTKERVESFYCKSNGYEHNSTVI---Y 751
Query: 795 NDYDSVF-KIG-NQI-------KSECNKLYKQLELDID-GVXXXXXXXXXXXXXXXXXXX 844
D DSV K G N I K ++ K+ I
Sbjct: 752 GDTDSVMVKFGTNNIEEAMTLGKDAAERISKEFLSPIKLEFEKVYCPYLLLNKKRYAGLL 811
Query: 845 XXNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMK 904
N + KG++ VRRD+ L + + V++++L E++ L + E+ K
Sbjct: 812 YTNPNKHDKMDCKGIETVRRDFCILIQQMMETVLNKLLIEKN---------LNSAIEYTK 862
Query: 905 -KIRTDLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQ-GDTI 962
KI+ L N + ++LL +TK L K +Y R LPHV++A +L +S GD +
Sbjct: 863 SKIKELLTNN-IDMSLLVVTKSLGKT--DYETR--LPHVELAKKLKQRDSATAPNVGDRV 917
Query: 963 SYIICEDGTSEAATQRAYN-IEELKNNSKLKIDVNYYLSQQIHPVVTRLLEPI-EGTDAV 1020
SYII + +A +RA + + L NN L ID N+YL P+ +R+ E I + +D++
Sbjct: 918 SYIIVKGVKGQAQYERAEDPLYVLDNN--LAIDYNHYLDAIKSPL-SRIFEVIMQNSDSL 974
Score = 63 (27.2 bits), Expect = 1.0e-27, Sum P(2) = 1.0e-27
Identities = 33/167 (19%), Positives = 68/167 (40%)
Query: 418 CVIVQNIDR--KIYLLPRSEHLKTKEPVSIAQVYSEFDQIATQYKILDFKSRKIE--KKY 473
C ++ N+ + + + + ++ + + + +E + +QYKI + K KIE K
Sbjct: 129 CSVLINVHNFFPYFYVEKPDDFDNEDLIKLEMLMNENLNLNSQYKIYEKKILKIEIVKTE 188
Query: 474 A---FNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSH-------VFGTKSSFLENLLL 523
+ F G D + + V P+L G + V+ F+ ++
Sbjct: 189 SLMYFKKNGKKDFLK-ITVLLPKMVPSLKKYFEGIVHVNNKSIGGIVYEANLPFILRYII 247
Query: 524 ERKIKGPSWLEFPEAEKF----PSRISWCKYEVQCN--QMEKIRITN 564
+ KI G SW+ + + +IS C +E+ + +E I + N
Sbjct: 248 DHKITGSSWINCKKGHYYIRNKNKKISNCTFEIDISYEHVEPITLEN 294
>UNIPROTKB|Q7KQL4 [details] [associations]
symbol:PF10_0165 "DNA polymerase" species:36329 "Plasmodium
falciparum 3D7" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=ISS] [GO:0008310 "single-stranded DNA specific 3'-5'
exodeoxyribonuclease activity" evidence=ISS] [GO:0043625 "delta DNA
polymerase complex" evidence=ISS] InterPro:IPR004578
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098 EMBL:AE014185
GO:GO:0003887 Gene3D:3.90.1600.10 InterPro:IPR023211
TIGRFAMs:TIGR00592 KO:K02327 InterPro:IPR025687 Pfam:PF14260
HOGENOM:HOG000036616 OMA:MIEQTKQ GO:GO:0043625 ProtClustDB:PTZ00166
GO:GO:0008310 RefSeq:XP_001347450.1 ProteinModelPortal:Q7KQL4
EnsemblProtists:PF10_0165:mRNA GeneID:810323 KEGG:pfa:PF10_0165
EuPathDB:PlasmoDB:PF3D7_1017000 Uniprot:Q7KQL4
Length = 1094
Score = 340 (124.7 bits), Expect = 1.0e-27, Sum P(2) = 1.0e-27
Identities = 129/420 (30%), Positives = 211/420 (50%)
Query: 626 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI-----PVRMLQDSDITTL- 679
Y G VLEP KG+Y + I +DF SLYPSI+ +N+C++T+ V LQ+ DITT+
Sbjct: 577 YEGATVLEPIKGYYIEPISTLDFASLYPSIMIAHNLCYSTLIKSNHEVSDLQNDDITTIQ 636
Query: 680 ----CEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTA 735
+++ ++ V GILP +++L+E+R++VK L+K ++ M + RQ ALK++A
Sbjct: 637 GKNNLKFVKKN-VKKGILPLIVEELIEARKKVKLLIKNEK-NNITKMVLNGRQLALKISA 694
Query: 736 NSMYGCLGFPNS-RFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNV 794
NS+YG G + + +A +T GR ++ TK VE+ + + +S +I
Sbjct: 695 NSVYGYTGASSGGQLPCLEVAVSITTLGRSMIEKTKERVESFYCKSNGYEHNSTVI---Y 751
Query: 795 NDYDSVF-KIG-NQI-------KSECNKLYKQLELDID-GVXXXXXXXXXXXXXXXXXXX 844
D DSV K G N I K ++ K+ I
Sbjct: 752 GDTDSVMVKFGTNNIEEAMTLGKDAAERISKEFLSPIKLEFEKVYCPYLLLNKKRYAGLL 811
Query: 845 XXNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMK 904
N + KG++ VRRD+ L + + V++++L E++ L + E+ K
Sbjct: 812 YTNPNKHDKMDCKGIETVRRDFCILIQQMMETVLNKLLIEKN---------LNSAIEYTK 862
Query: 905 -KIRTDLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQ-GDTI 962
KI+ L N + ++LL +TK L K +Y R LPHV++A +L +S GD +
Sbjct: 863 SKIKELLTNN-IDMSLLVVTKSLGKT--DYETR--LPHVELAKKLKQRDSATAPNVGDRV 917
Query: 963 SYIICEDGTSEAATQRAYN-IEELKNNSKLKIDVNYYLSQQIHPVVTRLLEPI-EGTDAV 1020
SYII + +A +RA + + L NN L ID N+YL P+ +R+ E I + +D++
Sbjct: 918 SYIIVKGVKGQAQYERAEDPLYVLDNN--LAIDYNHYLDAIKSPL-SRIFEVIMQNSDSL 974
Score = 63 (27.2 bits), Expect = 1.0e-27, Sum P(2) = 1.0e-27
Identities = 33/167 (19%), Positives = 68/167 (40%)
Query: 418 CVIVQNIDR--KIYLLPRSEHLKTKEPVSIAQVYSEFDQIATQYKILDFKSRKIE--KKY 473
C ++ N+ + + + + ++ + + + +E + +QYKI + K KIE K
Sbjct: 129 CSVLINVHNFFPYFYVEKPDDFDNEDLIKLEMLMNENLNLNSQYKIYEKKILKIEIVKTE 188
Query: 474 A---FNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSH-------VFGTKSSFLENLLL 523
+ F G D + + V P+L G + V+ F+ ++
Sbjct: 189 SLMYFKKNGKKDFLK-ITVLLPKMVPSLKKYFEGIVHVNNKSIGGIVYEANLPFILRYII 247
Query: 524 ERKIKGPSWLEFPEAEKF----PSRISWCKYEVQCN--QMEKIRITN 564
+ KI G SW+ + + +IS C +E+ + +E I + N
Sbjct: 248 DHKITGSSWINCKKGHYYIRNKNKKISNCTFEIDISYEHVEPITLEN 294
>UNIPROTKB|P28340 [details] [associations]
symbol:POLD1 "DNA polymerase delta catalytic subunit"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA]
[GO:0007346 "regulation of mitotic cell cycle" evidence=IBA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IBA] [GO:0019985
"translesion synthesis" evidence=IBA] [GO:0043137 "DNA replication,
removal of RNA primer" evidence=IBA] [GO:0043625 "delta DNA
polymerase complex" evidence=IBA] [GO:0045004 "DNA replication
proofreading" evidence=IBA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0000731 "DNA
synthesis involved in DNA repair" evidence=IDA;IMP] [GO:0003677
"DNA binding" evidence=IDA] [GO:0000084 "S phase of mitotic cell
cycle" evidence=IDA;TAS] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IMP] [GO:0006260 "DNA replication" evidence=IMP]
[GO:0006287 "base-excision repair, gap-filling" evidence=IDA]
[GO:0000109 "nucleotide-excision repair complex" evidence=IDA]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IC;IMP;TAS] [GO:0009411 "response to UV" evidence=TAS]
[GO:0000278 "mitotic cell cycle" evidence=TAS] [GO:0000722
"telomere maintenance via recombination" evidence=TAS] [GO:0000723
"telomere maintenance" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006271 "DNA strand elongation involved in DNA
replication" evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006283 "transcription-coupled nucleotide-excision repair"
evidence=TAS] [GO:0006284 "base-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0032201
"telomere maintenance via semi-conservative replication"
evidence=TAS] Reactome:REACT_216 InterPro:IPR004578
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 EMBL:AY129569
GO:GO:0007346 GO:GO:0009411 Reactome:REACT_115566 GO:GO:0005654
GO:GO:0000166 GO:GO:0046872 GO:GO:0003677 GO:GO:0003682
GO:GO:0051539 SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408
GO:GO:0000722 GO:GO:0000731 Reactome:REACT_383 GO:GO:0006283
GO:GO:0043137 GO:GO:0003887 GO:GO:0032201 GO:GO:0006297
eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0006287 TIGRFAMs:TIGR00592 CTD:5424 HOVERGEN:HBG051395
KO:K02327 InterPro:IPR025687 Pfam:PF14260 HOGENOM:HOG000036616
OMA:MIEQTKQ GO:GO:0043625 EMBL:M80397 EMBL:M81735 EMBL:BC008800
IPI:IPI00002894 PIR:A41618 RefSeq:NP_001243778.1 RefSeq:NP_002682.2
UniGene:Hs.279413 ProteinModelPortal:P28340 SMR:P28340
IntAct:P28340 MINT:MINT-1414678 STRING:P28340 PhosphoSite:P28340
DMDM:50403732 PaxDb:P28340 PRIDE:P28340 DNASU:5424
Ensembl:ENST00000440232 GeneID:5424 KEGG:hsa:5424 UCSC:uc002psb.4
GeneCards:GC19P050889 H-InvDB:HIX0202825 HGNC:HGNC:9175
HPA:CAB004375 MIM:174761 neXtProt:NX_P28340 PharmGKB:PA33496
PhylomeDB:P28340 BindingDB:P28340 ChEMBL:CHEMBL2735 GenomeRNAi:5424
NextBio:20985 PMAP-CutDB:P28340 Bgee:P28340 CleanEx:HS_POLD1
Genevestigator:P28340 GermOnline:ENSG00000062822 GO:GO:0000109
Uniprot:P28340
Length = 1107
Score = 357 (130.7 bits), Expect = 1.2e-27, Sum P(3) = 1.2e-27
Identities = 120/415 (28%), Positives = 202/415 (48%)
Query: 626 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI--P-----VRMLQDSDITT 678
Y+G V+EP KG+YD I +DF+SLYPSI+ +N+C+TT+ P + + +D I T
Sbjct: 581 YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGTAQKLGLTEDQFIRT 640
Query: 679 LC--EYLPEHQVDTGILPSEIKKLVESRRQVKA-LMKQPN-LSSDLLMQYDIRQKALKLT 734
E++ + V G+LP ++ L+ +R++ KA L K+ + L +L D RQ ALK++
Sbjct: 641 PTGDEFV-KTSVRKGLLPQILENLLSARKRAKAELAKETDPLRRQVL---DGRQLALKVS 696
Query: 735 ANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENL-----NY----EVIYGDT 785
ANS+YG G + ++ VT GR+++ TK LVE+ Y +V+YGDT
Sbjct: 697 ANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVESKYTVENGYSTSAKVVYGDT 756
Query: 786 DSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVXXXXXXXXXXXXXXXXXXX 844
DS+M V+ +G + + + + L+ + V
Sbjct: 757 DSVMCRFGVSSVAEAMALGREAADWVSGHFPSPIRLEFEKVYFPYLLISKKRYAGLLFSS 816
Query: 845 X--XNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEH 902
+ +M C KG++ VRRD L + + ++L +D + H
Sbjct: 817 RPDAHDRMDC----KGLEAVRRDNCPLVANLVTASLRRLL---------IDRDPEGAVAH 863
Query: 903 MKKIRTDLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQ-GDT 961
+ + +DL + ++ L ITK+LT+A +Y ++A HV++A R+ + GD
Sbjct: 864 AQDVISDLLCNRIDISQLVITKELTRAASDYAGKQA--HVELAERMRKRDPGSAPSLGDR 921
Query: 962 ISYIICEDGTSEAATQRAYNIEELKNNSKLKIDVNYYLSQQIHPVVTRLLEPIEG 1016
+ Y+I AA ++ + + +S L ID YYL QQ+ + R+ EPI G
Sbjct: 922 VPYVIISAAKGVAAYMKSEDPLFVLEHS-LPIDTQYYLEQQLAKPLLRIFEPILG 975
Score = 48 (22.0 bits), Expect = 1.2e-27, Sum P(3) = 1.2e-27
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 1014 IEGTDAVRIAE-CLGLDTSLY-RSQIKESIQQSEENILGVGEAEEV 1057
++ D + + E L +DT Y Q+ + + + E ILG G AE V
Sbjct: 937 MKSEDPLFVLEHSLPIDTQYYLEQQLAKPLLRIFEPILGEGRAEAV 982
Score = 45 (20.9 bits), Expect = 1.2e-27, Sum P(3) = 1.2e-27
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 522 LLERKIKGPSWLEFPEAEKFPSRISWCKYEVQCNQME 558
+++ I G +WLE P A K+ R+ + QC Q+E
Sbjct: 255 MVDTDIVGCNWLELP-AGKYALRLK--EKATQC-QLE 287
>UNIPROTKB|E2R5W5 [details] [associations]
symbol:POLD1 "DNA polymerase" species:9615 "Canis lupus
familiaris" [GO:0045004 "DNA replication proofreading"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IEA] [GO:0006287 "base-excision repair,
gap-filling" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0000731
"DNA synthesis involved in DNA repair" evidence=IEA] [GO:0000109
"nucleotide-excision repair complex" evidence=IEA] [GO:0000084 "S
phase of mitotic cell cycle" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR004578
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0000166
GO:GO:0003677 GO:GO:0003682 SUPFAM:SSF53098 GO:GO:0000084
GO:GO:0008408 GO:GO:0000731 GO:GO:0003887 GO:GO:0006297
GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0006287
TIGRFAMs:TIGR00592 CTD:5424 KO:K02327 InterPro:IPR025687
Pfam:PF14260 GeneTree:ENSGT00560000077365 GO:GO:0000109
EMBL:AAEX03000791 RefSeq:XP_851285.1 Ensembl:ENSCAFT00000004726
GeneID:610047 KEGG:cfa:610047 Uniprot:E2R5W5
Length = 1107
Score = 354 (129.7 bits), Expect = 3.1e-27, Sum P(3) = 3.1e-27
Identities = 120/415 (28%), Positives = 201/415 (48%)
Query: 626 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI--P-----VRMLQDSDITT 678
Y+G V+EP KG+YD I +DF+SLYPSI+ +N+C+TT+ P + + +D I T
Sbjct: 581 YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLTKDQFIKT 640
Query: 679 LC--EYLPEHQVDTGILPSEIKKLVESRRQVKA-LMKQPN-LSSDLLMQYDIRQKALKLT 734
E++ + V G+LP ++ L+ +R++ KA L K+ + L +L D RQ ALK++
Sbjct: 641 PTGDEFV-KTSVRKGLLPQILENLLSARKRAKAELAKETDPLRRQVL---DGRQLALKVS 696
Query: 735 ANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN---------LNYEVIYGDT 785
ANS+YG G + ++ VT GR+++ TK LVE+ N +V+YGDT
Sbjct: 697 ANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVESKYTVENGYSANAKVVYGDT 756
Query: 786 DSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVXXXXXXXXXXXXXXXXXXX 844
DS+M V+ +G + + + + L+ + V
Sbjct: 757 DSVMCRFGVSSVAEAMALGREAADWVSGHFPPPIRLEFEKVYFPYLLISKKRYAGLLFSS 816
Query: 845 X--XNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEH 902
+ +M C KG++ VRRD L + + ++L +D H
Sbjct: 817 RPDAHDRMDC----KGLEAVRRDNCPLVANLVTASLRRLL---------IDRDPAGAVAH 863
Query: 903 MKKIRTDLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQ-GDT 961
+ + +DL + ++ L ITK+LT+A +Y ++A HV++A R+ + GD
Sbjct: 864 AQDVISDLLCNRIDISQLVITKELTRAAADYAGKQA--HVELAERMRKRDPGSAPSLGDR 921
Query: 962 ISYIICEDGTSEAATQRAYNIEELKNNSKLKIDVNYYLSQQIHPVVTRLLEPIEG 1016
+ Y+I AA ++ + + +S L ID YYL QQ+ + R+ EPI G
Sbjct: 922 VPYVIIGAAKGVAAYMKSEDPLFVLEHS-LPIDTQYYLEQQLAKPLLRIFEPILG 975
Score = 48 (22.0 bits), Expect = 3.1e-27, Sum P(3) = 3.1e-27
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 1014 IEGTDAVRIAE-CLGLDTSLY-RSQIKESIQQSEENILGVGEAEEV 1057
++ D + + E L +DT Y Q+ + + + E ILG G AE V
Sbjct: 937 MKSEDPLFVLEHSLPIDTQYYLEQQLAKPLLRIFEPILGEGRAEAV 982
Score = 44 (20.5 bits), Expect = 3.1e-27, Sum P(3) = 3.1e-27
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 522 LLERKIKGPSWLEFPEAEKF 541
+++ I G +WLE P AEK+
Sbjct: 255 MVDTDIVGCNWLELP-AEKY 273
>UNIPROTKB|J9NS34 [details] [associations]
symbol:POLD1 "DNA polymerase" species:9615 "Canis lupus
familiaris" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 TIGRFAMs:TIGR00592 GeneTree:ENSGT00560000077365
OMA:MIEQTKQ EMBL:AAEX03000791 Ensembl:ENSCAFT00000045094
Uniprot:J9NS34
Length = 1131
Score = 354 (129.7 bits), Expect = 3.5e-27, Sum P(3) = 3.5e-27
Identities = 120/415 (28%), Positives = 201/415 (48%)
Query: 626 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI--P-----VRMLQDSDITT 678
Y+G V+EP KG+YD I +DF+SLYPSI+ +N+C+TT+ P + + +D I T
Sbjct: 581 YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLTKDQFIKT 640
Query: 679 LC--EYLPEHQVDTGILPSEIKKLVESRRQVKA-LMKQPN-LSSDLLMQYDIRQKALKLT 734
E++ + V G+LP ++ L+ +R++ KA L K+ + L +L D RQ ALK++
Sbjct: 641 PTGDEFV-KTSVRKGLLPQILENLLSARKRAKAELAKETDPLRRQVL---DGRQLALKVS 696
Query: 735 ANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN---------LNYEVIYGDT 785
ANS+YG G + ++ VT GR+++ TK LVE+ N +V+YGDT
Sbjct: 697 ANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVESKYTVENGYSANAKVVYGDT 756
Query: 786 DSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVXXXXXXXXXXXXXXXXXXX 844
DS+M V+ +G + + + + L+ + V
Sbjct: 757 DSVMCRFGVSSVAEAMALGREAADWVSGHFPPPIRLEFEKVYFPYLLISKKRYAGLLFSS 816
Query: 845 X--XNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEH 902
+ +M C KG++ VRRD L + + ++L +D H
Sbjct: 817 RPDAHDRMDC----KGLEAVRRDNCPLVANLVTASLRRLL---------IDRDPAGAVAH 863
Query: 903 MKKIRTDLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQ-GDT 961
+ + +DL + ++ L ITK+LT+A +Y ++A HV++A R+ + GD
Sbjct: 864 AQDVISDLLCNRIDISQLVITKELTRAAADYAGKQA--HVELAERMRKRDPGSAPSLGDR 921
Query: 962 ISYIICEDGTSEAATQRAYNIEELKNNSKLKIDVNYYLSQQIHPVVTRLLEPIEG 1016
+ Y+I AA ++ + + +S L ID YYL QQ+ + R+ EPI G
Sbjct: 922 VPYVIIGAAKGVAAYMKSEDPLFVLEHS-LPIDTQYYLEQQLAKPLLRIFEPILG 975
Score = 48 (22.0 bits), Expect = 3.5e-27, Sum P(3) = 3.5e-27
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 1014 IEGTDAVRIAE-CLGLDTSLY-RSQIKESIQQSEENILGVGEAEEV 1057
++ D + + E L +DT Y Q+ + + + E ILG G AE V
Sbjct: 937 MKSEDPLFVLEHSLPIDTQYYLEQQLAKPLLRIFEPILGEGRAEAV 982
Score = 44 (20.5 bits), Expect = 3.5e-27, Sum P(3) = 3.5e-27
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 522 LLERKIKGPSWLEFPEAEKF 541
+++ I G +WLE P AEK+
Sbjct: 255 MVDTDIVGCNWLELP-AEKY 273
>UNIPROTKB|E1BNZ6 [details] [associations]
symbol:E1BNZ6 "DNA polymerase" species:9913 "Bos taurus"
[GO:0045004 "DNA replication proofreading" evidence=IEA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IEA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IEA]
[GO:0006287 "base-excision repair, gap-filling" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0000731 "DNA synthesis involved in DNA
repair" evidence=IEA] [GO:0000109 "nucleotide-excision repair
complex" evidence=IEA] [GO:0000084 "S phase of mitotic cell cycle"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0000166 GO:GO:0003677 GO:GO:0003682
SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408 GO:GO:0000731
GO:GO:0003887 GO:GO:0006297 GO:GO:0045004 Gene3D:3.90.1600.10
InterPro:IPR023211 GO:GO:0006287 TIGRFAMs:TIGR00592 IPI:IPI00706072
GeneTree:ENSGT00560000077365 OMA:MIEQTKQ GO:GO:0000109
EMBL:DAAA02047499 EMBL:DAAA02047500 Ensembl:ENSBTAT00000014714
Uniprot:E1BNZ6
Length = 984
Score = 357 (130.7 bits), Expect = 4.1e-27, Sum P(3) = 4.1e-27
Identities = 120/415 (28%), Positives = 201/415 (48%)
Query: 626 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI--P-----VRMLQDSDITT 678
Y+G V+EP KG+YD I +DF+SLYPSI+ +N+C+TT+ P + + +D I T
Sbjct: 580 YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLTEDQFIKT 639
Query: 679 LC--EYLPEHQVDTGILPSEIKKLVESRRQVKA-LMKQPN-LSSDLLMQYDIRQKALKLT 734
E++ + V G+LP ++ L+ +R++ KA L K+ + L +L D RQ ALK++
Sbjct: 640 PTGDEFV-KASVRKGLLPQILENLLSARKRAKAELAKETDPLRRQVL---DGRQLALKVS 695
Query: 735 ANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYEVIYGDT 785
ANS+YG G R ++ VT GR+++ TK LVE + + +V+YGDT
Sbjct: 696 ANSVYGFTGAQVGRLPCLEISQSVTGFGRQMIEKTKQLVETKYTVENGYSTSAKVVYGDT 755
Query: 786 DSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVXXXXXXXXXXXXXXXXXXX 844
DS+M V+ +G + + + + L+ + V
Sbjct: 756 DSVMCRFGVSSVAEAMALGREAADWVSGHFPSPIRLEFEKVYFPYLLISKKRYAGLLFSS 815
Query: 845 X--XNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEH 902
+ +M C KG++ VRRD L + + ++L +D H
Sbjct: 816 RPDAHDRMDC----KGLEAVRRDNCPLVANLVTASLRRLL---------IDRDPSGAVAH 862
Query: 903 MKKIRTDLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQ-GDT 961
+ + +DL + ++ L ITK+LT+A +Y ++A HV++A R+ + GD
Sbjct: 863 AQDVISDLLCNRIDISQLVITKELTRAAADYAGKQA--HVELAERMRKRDPGSAPSLGDR 920
Query: 962 ISYIICEDGTSEAATQRAYNIEELKNNSKLKIDVNYYLSQQIHPVVTRLLEPIEG 1016
+ Y+I AA ++ + + +S L ID YYL QQ+ + R+ EPI G
Sbjct: 921 VPYVIISAAKGVAAYMKSEDPLFVLEHS-LPIDTQYYLEQQLAKPLLRIFEPILG 974
Score = 48 (22.0 bits), Expect = 4.1e-27, Sum P(3) = 4.1e-27
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 1014 IEGTDAVRIAE-CLGLDTSLY-RSQIKESIQQSEENILGVGEAEEV 1057
++ D + + E L +DT Y Q+ + + + E ILG G AE V
Sbjct: 936 MKSEDPLFVLEHSLPIDTQYYLEQQLAKPLLRIFEPILGEGRAEAV 981
Score = 37 (18.1 bits), Expect = 4.1e-27, Sum P(3) = 4.1e-27
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 522 LLERKIKGPSWLEFPEAEKF 541
+++ I G +WLE P A K+
Sbjct: 254 MVDTDIVGCNWLELP-AGKY 272
>UNIPROTKB|F1RH32 [details] [associations]
symbol:POLD1 "DNA polymerase" species:9823 "Sus scrofa"
[GO:0045004 "DNA replication proofreading" evidence=IEA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IEA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IEA]
[GO:0006287 "base-excision repair, gap-filling" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0000731 "DNA synthesis involved in DNA
repair" evidence=IEA] [GO:0000109 "nucleotide-excision repair
complex" evidence=IEA] [GO:0000084 "S phase of mitotic cell cycle"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0000166 GO:GO:0003677 GO:GO:0003682
SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408 GO:GO:0000731
GO:GO:0003887 GO:GO:0006297 GO:GO:0045004 Gene3D:3.90.1600.10
InterPro:IPR023211 GO:GO:0006287 TIGRFAMs:TIGR00592 CTD:5424
KO:K02327 InterPro:IPR025687 Pfam:PF14260
GeneTree:ENSGT00560000077365 OMA:MIEQTKQ GO:GO:0000109
EMBL:FP102476 RefSeq:XP_003127412.2 Ensembl:ENSSSCT00000003572
GeneID:100525752 KEGG:ssc:100525752 Uniprot:F1RH32
Length = 1107
Score = 349 (127.9 bits), Expect = 4.1e-27, Sum P(2) = 4.1e-27
Identities = 120/415 (28%), Positives = 200/415 (48%)
Query: 626 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI--P-----VRMLQDSDITT 678
Y+G V+EP KG+YD I +DF+SLYPSI+ +N+C+TT+ P + + D I T
Sbjct: 581 YTGATVIEPLKGYYDVPITTLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLTADQFIKT 640
Query: 679 LC--EYLPEHQVDTGILPSEIKKLVESRRQVKA-LMKQPN-LSSDLLMQYDIRQKALKLT 734
E++ + V G+LP ++ L+ +R++ KA L K+ + L +L D RQ ALK++
Sbjct: 641 PTGDEFV-KTSVRKGLLPQILENLLSARKRAKAELAKETDPLRRQVL---DGRQLALKVS 696
Query: 735 ANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENL-----NY----EVIYGDT 785
ANS+YG G + ++ VT GR+++ TK LVE+ Y +V+YGDT
Sbjct: 697 ANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVESKYTVENGYGTSAKVVYGDT 756
Query: 786 DSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVXXXXXXXXXXXXXXXXXXX 844
DS+M V+ +G + + + + L+ + V
Sbjct: 757 DSVMCRFGVSSVAEAMALGREAADWVSGHFPAPIRLEFEKVYFPYLLISKKRYAGLLFSS 816
Query: 845 X--XNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEH 902
+ +M C KG++ VRRD L + + ++L +D H
Sbjct: 817 RPDTHDRMDC----KGLEAVRRDNCPLVANLVTASLRRLL---------IDRDPAGAVAH 863
Query: 903 MKKIRTDLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQ-GDT 961
+ + +DL + ++ L ITK+LT+A +Y ++A HV++A R+ + GD
Sbjct: 864 AQDVISDLLCNRIDISQLVITKELTRAAADYAGKQA--HVELAERMRKRDPGSAPSLGDR 921
Query: 962 ISYIICEDGTSEAATQRAYNIEELKNNSKLKIDVNYYLSQQIHPVVTRLLEPIEG 1016
+ Y+I AA ++ + + +S L ID YYL QQ+ + R+ EPI G
Sbjct: 922 VPYVIISAAKGVAAYMKSEDPLFVLEHS-LPIDTQYYLEQQLAKPLLRIFEPILG 975
Score = 48 (22.0 bits), Expect = 4.1e-27, Sum P(2) = 4.1e-27
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 1014 IEGTDAVRIAE-CLGLDTSLY-RSQIKESIQQSEENILGVGEAEEV 1057
++ D + + E L +DT Y Q+ + + + E ILG G AE V
Sbjct: 937 MKSEDPLFVLEHSLPIDTQYYLEQQLAKPLLRIFEPILGEGRAEAV 982
>UNIPROTKB|P28339 [details] [associations]
symbol:POLD1 "DNA polymerase delta catalytic subunit"
species:9913 "Bos taurus" [GO:0006260 "DNA replication"
evidence=TAS] [GO:0005634 "nucleus" evidence=IC] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=TAS] [GO:0051539 "4
iron, 4 sulfur cluster binding" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0004527 "exonuclease activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR004578
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0005634
GO:GO:0000166 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0051539 GO:GO:0004527 GO:GO:0090305 SUPFAM:SSF53098
GO:GO:0003887 eggNOG:COG0417 Gene3D:3.90.1600.10 InterPro:IPR023211
TIGRFAMs:TIGR00592 EMBL:M80395 IPI:IPI00706072 PIR:A39299
RefSeq:NP_776852.1 UniGene:Bt.4749 ProteinModelPortal:P28339
IntAct:P28339 STRING:P28339 PRIDE:P28339 GeneID:281990
KEGG:bta:281990 CTD:5424 HOVERGEN:HBG051395 KO:K02327
BindingDB:P28339 ChEMBL:CHEMBL4057 NextBio:20805858
InterPro:IPR025687 Pfam:PF14260 Uniprot:P28339
Length = 1106
Score = 357 (130.7 bits), Expect = 7.7e-27, Sum P(3) = 7.7e-27
Identities = 120/415 (28%), Positives = 201/415 (48%)
Query: 626 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI--P-----VRMLQDSDITT 678
Y+G V+EP KG+YD I +DF+SLYPSI+ +N+C+TT+ P + + +D I T
Sbjct: 580 YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLTEDQFIKT 639
Query: 679 LC--EYLPEHQVDTGILPSEIKKLVESRRQVKA-LMKQPN-LSSDLLMQYDIRQKALKLT 734
E++ + V G+LP ++ L+ +R++ KA L K+ + L +L D RQ ALK++
Sbjct: 640 PTGDEFV-KASVRKGLLPQILENLLSARKRAKAELAKETDPLRRQVL---DGRQLALKVS 695
Query: 735 ANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYEVIYGDT 785
ANS+YG G R ++ VT GR+++ TK LVE + + +V+YGDT
Sbjct: 696 ANSVYGFTGAQVGRLPCLEISQSVTGFGRQMIEKTKQLVETKYTVENGYSTSAKVVYGDT 755
Query: 786 DSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVXXXXXXXXXXXXXXXXXXX 844
DS+M V+ +G + + + + L+ + V
Sbjct: 756 DSVMCRFGVSSVAEAMALGREAADWVSGHFPSPIRLEFEKVYFPYLLISKKRYAGLLFSS 815
Query: 845 X--XNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEH 902
+ +M C KG++ VRRD L + + ++L +D H
Sbjct: 816 RPDAHDRMDC----KGLEAVRRDNCPLVANLVTASLRRLL---------IDRDPSGAVAH 862
Query: 903 MKKIRTDLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQ-GDT 961
+ + +DL + ++ L ITK+LT+A +Y ++A HV++A R+ + GD
Sbjct: 863 AQDVISDLLCNRIDISQLVITKELTRAAADYAGKQA--HVELAERMRKRDPGSAPSLGDR 920
Query: 962 ISYIICEDGTSEAATQRAYNIEELKNNSKLKIDVNYYLSQQIHPVVTRLLEPIEG 1016
+ Y+I AA ++ + + +S L ID YYL QQ+ + R+ EPI G
Sbjct: 921 VPYVIISAAKGVAAYMKSEDPLFVLEHS-LPIDTQYYLEQQLAKPLLRIFEPILG 974
Score = 48 (22.0 bits), Expect = 7.7e-27, Sum P(3) = 7.7e-27
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 1014 IEGTDAVRIAE-CLGLDTSLY-RSQIKESIQQSEENILGVGEAEEV 1057
++ D + + E L +DT Y Q+ + + + E ILG G AE V
Sbjct: 936 MKSEDPLFVLEHSLPIDTQYYLEQQLAKPLLRIFEPILGEGRAEAV 981
Score = 37 (18.1 bits), Expect = 7.7e-27, Sum P(3) = 7.7e-27
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 522 LLERKIKGPSWLEFPEAEKF 541
+++ I G +WLE P A K+
Sbjct: 254 MVDTDIVGCNWLELP-AGKY 272
>UNIPROTKB|A8HPJ0 [details] [associations]
symbol:POLD1 "DNA polymerase" species:3055 "Chlamydomonas
reinhardtii" [GO:0000084 "S phase of mitotic cell cycle"
evidence=IBA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0006287
"base-excision repair, gap-filling" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0007346 "regulation of mitotic cell cycle" evidence=IBA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IBA] [GO:0043137
"DNA replication, removal of RNA primer" evidence=IBA] [GO:0043625
"delta DNA polymerase complex" evidence=IBA] [GO:0045004 "DNA
replication proofreading" evidence=IBA] [GO:0019985 "translesion
synthesis" evidence=IBA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0007346 GO:GO:0000166
GO:GO:0003677 SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408
GO:GO:0043137 GO:GO:0003887 EMBL:DS496108 GO:GO:0006297
eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0006287 TIGRFAMs:TIGR00592 KO:K02327 InterPro:IPR025687
Pfam:PF14260 GO:GO:0043625 ProtClustDB:CLSN2698457
RefSeq:XP_001689909.1 UniGene:Cre.7835 STRING:A8HPJ0
EnsemblPlants:EDP09647 GeneID:5715105 KEGG:cre:CHLREDRAFT_189721
BioCyc:CHLAMY:CHLREDRAFT_189721-MONOMER Uniprot:A8HPJ0
Length = 1091
Score = 354 (129.7 bits), Expect = 9.9e-27, Sum P(2) = 9.9e-27
Identities = 114/408 (27%), Positives = 201/408 (49%)
Query: 626 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVR-ML-----QDSDITTL 679
Y G VL+PK GFYD+ + +DF SLYPSI+ +N+C+TT+ + L +D + +
Sbjct: 570 YEGATVLDPKIGFYDRPVATLDFASLYPSIMMAHNLCYTTLLTKDQLNIVPPEDREQSPS 629
Query: 680 CEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMY 739
++ + G+LP +++L+ +R++ K +K + D RQ ALK++ANS+Y
Sbjct: 630 GDWFVRNSRQRGLLPEILEELLAARKRAKNDLKAEKDPFKRAV-LDGRQLALKVSANSVY 688
Query: 740 GCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN----LN-YE----VIYGDTDSLMI 790
G G + ++A T+ GRE+++ T+ LV+ N YE VIYGDTDS+M+
Sbjct: 689 GFTGATVGKMPCLAISASTTSYGREMIMTTRQLVQEHYTRANGYETDCEVIYGDTDSVMV 748
Query: 791 SCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVXXXXXXXXXXXXXXXXXXX-XXNG 848
+ V D ++G + + +K + ++L+ + V +
Sbjct: 749 NFKVADVARAMELGREAAAVVSKAFPPPVKLEFEKVYYPYLLMNKKRYAGLLWTRPETHD 808
Query: 849 KMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRT 908
KM + KG++ VRRD L + +IL + +Q ++K +
Sbjct: 809 KM----DSKGIETVRRDNCLLVRNVVTTCLERIL---------IGKDVQGAVGYVKGVIA 855
Query: 909 DLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQ-GDTISYIIC 967
DL + L+LL I+K LT+ +EY + A HV++A ++ + GD + Y+I
Sbjct: 856 DLLMNKIDLSLLVISKGLTQDADEYEGKIA--HVELAKKMRKRDPATAPAVGDRVPYVII 913
Query: 968 EDGTSEAATQRAYN-IEELKNNSKLKIDVNYYLSQQIHPVVTRLLEPI 1014
+ A ++A + I L+++ L IDV +YL + + R+ EP+
Sbjct: 914 KAAKGAKAWEKAEDPIYALEHS--LPIDVQHYLEHHLSQPLLRIFEPV 959
Score = 39 (18.8 bits), Expect = 9.9e-27, Sum P(2) = 9.9e-27
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 517 FLENLLLERKIKGPSWLEFP 536
F +++ K+ G +W+E P
Sbjct: 231 FTLRFMVDCKVVGGNWVELP 250
>UNIPROTKB|Q22HL1 [details] [associations]
symbol:TTHERM_00636920 "DNA polymerase" species:312017
"Tetrahymena thermophila SB210" [GO:0000084 "S phase of mitotic
cell cycle" evidence=IBA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IBA] [GO:0005634 "nucleus" evidence=IBA]
[GO:0006287 "base-excision repair, gap-filling" evidence=IBA]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IBA] [GO:0007346 "regulation of mitotic cell cycle"
evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=IBA] [GO:0043625 "delta DNA polymerase complex"
evidence=IBA] [GO:0045004 "DNA replication proofreading"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0007346
GO:GO:0000166 GO:GO:0003677 SUPFAM:SSF53098 GO:GO:0000084
GO:GO:0008408 GO:GO:0043137 GO:GO:0003887 GO:GO:0006297
GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0006287
KO:K02327 InterPro:IPR025687 Pfam:PF14260 GO:GO:0043625
ProtClustDB:PTZ00166 EMBL:GG662588 RefSeq:XP_001032353.1
EnsemblProtists:EAR84690 GeneID:7846549 KEGG:tet:TTHERM_00636920
Uniprot:Q22HL1
Length = 1124
Score = 312 (114.9 bits), Expect = 2.8e-26, Sum P(4) = 2.8e-26
Identities = 101/321 (31%), Positives = 156/321 (48%)
Query: 626 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI---PVRMLQDSDITTLC-- 680
+ G VL+PKKGFYDK I +DF SLYPSI+ +N+C++T+ V M + D TL
Sbjct: 575 FEGAFVLQPKKGFYDKPIATLDFASLYPSIMMAHNLCYSTLISKNVAMSMNKDDYTLTPH 634
Query: 681 -EYLPEHQVDTGILPSEIKKLVESRRQVK-ALMKQPNLSSDLLMQYDIRQKALKLTANSM 738
+Y + V GILP +K L+ +R++ K L K+ + ++ D RQ ALK++ANS+
Sbjct: 635 GDYFAKPHVRQGILPDILKDLLAARKKAKNELAKETDPLRKAVL--DGRQLALKISANSV 692
Query: 739 YGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN-------LNYE--VIYGDTDSLM 789
YG G + +++ VT+ GR+++ T+ V N NY+ VIYGDTDS+M
Sbjct: 693 YGFTGAQVGQLPCLEISSSVTSFGRQMIEATRDFVLNHYNKANGYNYDSDVIYGDTDSVM 752
Query: 790 ISCNVNDYDSVFKIGNQIKSECNK-LY-KQLELDIDGVXXXXXXXXXXXXXXXXXXXXXN 847
+ + + K G + +K L+ ++L+ + V
Sbjct: 753 VKFGCDSIEEAMKYGKEAAEMISKKLFINPIKLEFEKVYYPYLLISKKRYAGCFYTKPDK 812
Query: 848 GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIR 907
I + KG++ VRRD Q E + IL E D +Q + +K
Sbjct: 813 YDKI---DTKGMENVRRDNCQFIREMMNTCLRYILVEHK------QDGVQRSIQFIKGCI 863
Query: 908 TDLDNGFVPLTLLEITKQLTK 928
+DL V ++ L ITK LTK
Sbjct: 864 SDLYQNKVDISKLVITKSLTK 884
Score = 70 (29.7 bits), Expect = 2.8e-26, Sum P(4) = 2.8e-26
Identities = 24/96 (25%), Positives = 48/96 (50%)
Query: 932 EYTDRKALPHVQVALRLNNTNSKKLKQ-GDTISYIICEDGTSEAATQRAYN-IEELKNNS 989
+Y ++A HV++A ++ + GD I Y+I S ++ + I L+N+
Sbjct: 913 QYKGKQA--HVELAKKMAKRDPGSAPCIGDRIPYVIVAGAKSAKNYEKVEDPIYVLEND- 969
Query: 990 KLKIDVNYYLSQQIHPVVTRLLEPI-EGTDAVRIAE 1024
+ +D +YY+ +QI +TR+ I + D++ E
Sbjct: 970 -IPLDYDYYIEKQIKNPITRIYSHIIDNVDSLFYGE 1004
Score = 63 (27.2 bits), Expect = 2.8e-26, Sum P(4) = 2.8e-26
Identities = 31/111 (27%), Positives = 48/111 (43%)
Query: 459 YKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHV-FGTKSSF 517
YK D+ K Y F P +P L +E Y+ + G F V F + F
Sbjct: 188 YKGKDYAQDTYLKIYTFIPPFIPALRGMIEKGYT---------IDGIRFPAVTFESNIPF 238
Query: 518 LENLLLERKIKGPSWLEFPEAEKFPSRISWCKYEVQCNQME-KIRITNVCG 567
+++ I G W++ + EKF R S K++ +C Q+E + NV G
Sbjct: 239 ALRYMIDADIVGMGWIKL-DKEKFKIR-SLDKHKSRC-QIEIDVDCQNVHG 286
Score = 46 (21.3 bits), Expect = 7.8e-24, Sum P(4) = 7.8e-24
Identities = 27/124 (21%), Positives = 44/124 (35%)
Query: 1073 SCKQVNTVEAPTRLSTHGVVFVLDECINPECKVPPYTYLPHLINKLSQ------DMNKYI 1126
S K VE P + + + D I + K P H+I+ + N+Y
Sbjct: 952 SAKNYEKVEDPIYVLENDIPLDYDYYIEKQIKNPITRIYSHIIDNVDSLFYGEHTKNRYQ 1011
Query: 1127 VKYYEGW----LKCEDPGCSDLTRRCPLGLKTRLCTTC---HKYKLHRVYTELQLYQQLS 1179
K G + C L +C + K +C C + +L +YTE + Q
Sbjct: 1012 PKVNSGHGLGKFIVKKESC--LQCKCQVNGKQPVCDNCLEKNPQRLIDIYTEKIIQHQSI 1069
Query: 1180 FFHY 1183
+ Y
Sbjct: 1070 EYQY 1073
Score = 39 (18.8 bits), Expect = 2.8e-26, Sum P(4) = 2.8e-26
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 116 ED-GREIFDDDIEDV 129
ED G E+ +DD +DV
Sbjct: 13 EDFGDELIEDDFDDV 27
>DICTYBASE|DDB_G0285381 [details] [associations]
symbol:polD1 "DNA polymerase delta subunit 1"
species:44689 "Dictyostelium discoideum" [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006139 "nucleobase-containing
compound metabolic process" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA;ISS;IBA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0043625 "delta DNA polymerase complex" evidence=ISS;IBA]
[GO:0006281 "DNA repair" evidence=ISS] [GO:0019985 "translesion
synthesis" evidence=IBA] [GO:0045004 "DNA replication proofreading"
evidence=IBA] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0007346 "regulation of mitotic cell cycle"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0006287 "base-excision repair,
gap-filling" evidence=IBA] [GO:0005634 "nucleus" evidence=IEA;IBA]
[GO:0000084 "S phase of mitotic cell cycle" evidence=IBA]
[GO:0090305 "nucleic acid phosphodiester bond hydrolysis"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0004527 "exonuclease
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 dictyBase:DDB_G0285381 GO:GO:0007346
GenomeReviews:CM000153_GR GO:GO:0000166 GO:GO:0046872 GO:GO:0003677
EMBL:AAFI02000079 GO:GO:0051539 SUPFAM:SSF53098 GO:GO:0000084
GO:GO:0008408 GO:GO:0043137 GO:GO:0003887 GO:GO:0006297
eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0006287 TIGRFAMs:TIGR00592 KO:K02327 InterPro:IPR025687
Pfam:PF14260 OMA:MIEQTKQ GO:GO:0043625 RefSeq:XP_638283.1
HSSP:P26811 STRING:Q54N97 EnsemblProtists:DDB0232268 GeneID:8625091
KEGG:ddi:DDB_G0285381 ProtClustDB:PTZ00166 Uniprot:Q54N97
Length = 1104
Score = 335 (123.0 bits), Expect = 8.4e-26, Sum P(3) = 8.4e-26
Identities = 108/412 (26%), Positives = 195/412 (47%)
Query: 622 KKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI----PVRMLQDSDIT 677
K + G +V+EP GFYD I +DF SLYPSI+ +N+C++T+ + L T
Sbjct: 583 KGEKFQGAIVIEPTPGFYDTPIATLDFTSLYPSIMMAHNLCYSTLLSAEEAKKLPPEIYT 642
Query: 678 T--LCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTA 735
T ++ + G+LP +++L+ +R++ K +K + D RQ ALK++A
Sbjct: 643 TTPFGDHFIKSDTKKGLLPRILEELLSARKKAKDELKNEKDPFKRAV-LDGRQLALKISA 701
Query: 736 NSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENL-----NYE----VIYGDTD 786
NS+YG G + ++ VT+ GRE+L TK +VE Y+ +IYGDTD
Sbjct: 702 NSVYGFTGARVGKLPCLEISRSVTSFGREMLDKTKKIVEERYTIANGYKHDAVIIYGDTD 761
Query: 787 SLMISCNVNDYDSVFKIGNQI-KSECNKLYKQLELDIDGVXXXXXXXXXXXXXXXXXXX- 844
S+M+ V ++G K + + LD + V
Sbjct: 762 SVMVKFGVKTVAEAMEMGRDAAKFVTTTFIRPINLDFEKVYYPYLLMAKKKYAGLYWTKP 821
Query: 845 XXNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMK 904
+ +M ++KG+++VRRD L ++ +IL E+ L++ E+ K
Sbjct: 822 DIHDRM----DVKGLEMVRRDTCLLVRNVVSTILKKILIEKD---------LKSAEEYTK 868
Query: 905 KIRTDLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQ-GDTIS 963
+ +DL + L++L ITK L+K +Y + + H ++A ++ + GD +
Sbjct: 869 SVISDLLQNRLDLSMLVITKALSKT--QYKGK--VIHNELARKMRARDPATAPNLGDRVP 924
Query: 964 YIICEDGTSEAATQRAYN-IEELKNNSKLKIDVNYYLSQQIHPVVTRLLEPI 1014
Y++ + ++A + + L++N + +D YYL +Q+ + R+ +PI
Sbjct: 925 YVVIQGSKGAPIYEKAEDPLYALEHN--ILLDCQYYLDKQLKAPLIRIFKPI 974
Score = 52 (23.4 bits), Expect = 8.4e-26, Sum P(3) = 8.4e-26
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 517 FLENLLLERKIKGPSWLEFP-EAEKFPSR-ISWCKYEVQCNQMEKI 560
F L+++ I G SW+E P K +S C+ EV + +E I
Sbjct: 259 FALRFLIDKGITGCSWIELPANTYKLSETPVSTCQIEVDTS-LETI 303
Score = 46 (21.3 bits), Expect = 8.4e-26, Sum P(3) = 8.4e-26
Identities = 16/57 (28%), Positives = 30/57 (52%)
Query: 147 NPNAKGDIQKLLANMPVKKKKKEEVQLNNDDVLADLLSEVNTTIAPTLKLNTKTNEI 203
N + + DI+ ++ ++ ++KKK + N + L+D + T I P K T+ EI
Sbjct: 182 NQSNEKDIENIVVSIDIEKKKS--IMGYNPNPLSDFIRI--TLILP--KFVTRCREI 232
>ASPGD|ASPL0000065466 [details] [associations]
symbol:AN7325 species:162425 "Emericella nidulans"
[GO:0006281 "DNA repair" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0010972 "negative regulation of G2/M transition of mitotic cell
cycle" evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0007346 GO:GO:0000166
GO:GO:0003677 EMBL:BN001304 SUPFAM:SSF53098 GO:GO:0000084
GO:GO:0008408 EMBL:AACD01000127 GO:GO:0043137 GO:GO:0003887
GO:GO:0006297 eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10
InterPro:IPR023211 GO:GO:0006287 TIGRFAMs:TIGR00592 KO:K02327
InterPro:IPR025687 Pfam:PF14260 HOGENOM:HOG000036616 OMA:MIEQTKQ
GO:GO:0043625 OrthoDB:EOG4B01XB RefSeq:XP_680594.1 STRING:Q5AWK5
EnsemblFungi:CADANIAT00000110 GeneID:2870046 KEGG:ani:AN7325.2
Uniprot:Q5AWK5
Length = 1044
Score = 329 (120.9 bits), Expect = 6.3e-25, Sum P(2) = 6.3e-25
Identities = 106/367 (28%), Positives = 183/367 (49%)
Query: 626 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVR-----MLQDSD--ITT 678
Y G V+EP + +YD I +DF SLYPSIIQ +N+C+TT+ + M +D D +T
Sbjct: 576 YEGATVIEPIRDYYDVPIATLDFASLYPSIIQAHNLCYTTLLNKNSVAGMKKDEDYIVTP 635
Query: 679 LCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDI--RQKALKLTAN 736
+ +V G+L +++L+ +R++ K + Q +D + + RQ ALK++AN
Sbjct: 636 NGDMFCTPKVRKGLLSQILEELLSARKKAKKELAQ---ETDPFKKAVLNGRQLALKVSAN 692
Query: 737 SMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYEVIYGDTDS 787
S+YG G + +A+ T+ GR+++ TK VE + + +VIYGDTDS
Sbjct: 693 SVYGLTGATVGKLPCLAIASSTTSYGRQMIEKTKQEVEARYTIANGYSHDAKVIYGDTDS 752
Query: 788 LMISCNVNDYDSVFKIGNQIKSECN-KLYKQLELDIDGVXXXXXXXXXXXXXXXXXXXXX 846
+M+ V + + K+G + + K K ++L+ + V
Sbjct: 753 VMVKFGVTELEEAMKLGQEASEYVSSKFIKPIKLEFEKVYFPYLLINKKRYAGLYWT--- 809
Query: 847 NGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKI 906
N K + KG++ VRRD L + V+ +IL +D ++ E++K
Sbjct: 810 NPKKYDKMDTKGIETVRRDNCLLVQNVIETVLHKIL---------IDRDVEAAQEYVKDT 860
Query: 907 RTDLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQ-GDTISYI 965
+DL + ++ L ITK LTK + YT ++A HV++A R+ ++ GD ++Y+
Sbjct: 861 ISDLLQNKIDMSKLVITKALTK--DSYTAKQA--HVELAERMRKRDAGSAPTLGDRVAYV 916
Query: 966 ICEDGTS 972
I + GT+
Sbjct: 917 IVK-GTA 922
Score = 47 (21.6 bits), Expect = 6.3e-25, Sum P(2) = 6.3e-25
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 517 FLENLLLERKIKGPSWLEFPEAEKF----PS-RISWCKYEVQ 553
+L +++ I+G SW+E P A K+ P ++S C+ E +
Sbjct: 244 YLLRFMIDTDIQGMSWVEAP-AGKYELIAPQDKVSNCQLEAR 284
Score = 40 (19.1 bits), Expect = 3.4e-24, Sum P(2) = 3.4e-24
Identities = 14/50 (28%), Positives = 27/50 (54%)
Query: 421 VQNIDRKIYLLPRSEHLK-TKEPVSIAQVYSEFDQIATQYKILDFKSRKI 469
+ N D YLL R++HLK T P ++ + + ++ K +F S+++
Sbjct: 393 IANFDFP-YLLDRAKHLKCTNFPY-----WTRLNGMRSEAKDTNFSSKQM 436
>UNIPROTKB|Q5AWK5 [details] [associations]
symbol:AN7325.2 "DNA polymerase" species:227321
"Aspergillus nidulans FGSC A4" [GO:0000084 "S phase of mitotic cell
cycle" evidence=IBA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IBA] [GO:0005634 "nucleus" evidence=IBA]
[GO:0006287 "base-excision repair, gap-filling" evidence=IBA]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IBA] [GO:0007346 "regulation of mitotic cell cycle"
evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=IBA] [GO:0043625 "delta DNA polymerase complex"
evidence=IBA] [GO:0045004 "DNA replication proofreading"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0007346 GO:GO:0000166 GO:GO:0003677
EMBL:BN001304 SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408
EMBL:AACD01000127 GO:GO:0043137 GO:GO:0003887 GO:GO:0006297
eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0006287 TIGRFAMs:TIGR00592 KO:K02327 InterPro:IPR025687
Pfam:PF14260 HOGENOM:HOG000036616 OMA:MIEQTKQ GO:GO:0043625
OrthoDB:EOG4B01XB RefSeq:XP_680594.1 STRING:Q5AWK5
EnsemblFungi:CADANIAT00000110 GeneID:2870046 KEGG:ani:AN7325.2
Uniprot:Q5AWK5
Length = 1044
Score = 329 (120.9 bits), Expect = 6.3e-25, Sum P(2) = 6.3e-25
Identities = 106/367 (28%), Positives = 183/367 (49%)
Query: 626 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVR-----MLQDSD--ITT 678
Y G V+EP + +YD I +DF SLYPSIIQ +N+C+TT+ + M +D D +T
Sbjct: 576 YEGATVIEPIRDYYDVPIATLDFASLYPSIIQAHNLCYTTLLNKNSVAGMKKDEDYIVTP 635
Query: 679 LCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDI--RQKALKLTAN 736
+ +V G+L +++L+ +R++ K + Q +D + + RQ ALK++AN
Sbjct: 636 NGDMFCTPKVRKGLLSQILEELLSARKKAKKELAQ---ETDPFKKAVLNGRQLALKVSAN 692
Query: 737 SMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYEVIYGDTDS 787
S+YG G + +A+ T+ GR+++ TK VE + + +VIYGDTDS
Sbjct: 693 SVYGLTGATVGKLPCLAIASSTTSYGRQMIEKTKQEVEARYTIANGYSHDAKVIYGDTDS 752
Query: 788 LMISCNVNDYDSVFKIGNQIKSECN-KLYKQLELDIDGVXXXXXXXXXXXXXXXXXXXXX 846
+M+ V + + K+G + + K K ++L+ + V
Sbjct: 753 VMVKFGVTELEEAMKLGQEASEYVSSKFIKPIKLEFEKVYFPYLLINKKRYAGLYWT--- 809
Query: 847 NGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKI 906
N K + KG++ VRRD L + V+ +IL +D ++ E++K
Sbjct: 810 NPKKYDKMDTKGIETVRRDNCLLVQNVIETVLHKIL---------IDRDVEAAQEYVKDT 860
Query: 907 RTDLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQ-GDTISYI 965
+DL + ++ L ITK LTK + YT ++A HV++A R+ ++ GD ++Y+
Sbjct: 861 ISDLLQNKIDMSKLVITKALTK--DSYTAKQA--HVELAERMRKRDAGSAPTLGDRVAYV 916
Query: 966 ICEDGTS 972
I + GT+
Sbjct: 917 IVK-GTA 922
Score = 47 (21.6 bits), Expect = 6.3e-25, Sum P(2) = 6.3e-25
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 517 FLENLLLERKIKGPSWLEFPEAEKF----PS-RISWCKYEVQ 553
+L +++ I+G SW+E P A K+ P ++S C+ E +
Sbjct: 244 YLLRFMIDTDIQGMSWVEAP-AGKYELIAPQDKVSNCQLEAR 284
Score = 40 (19.1 bits), Expect = 3.4e-24, Sum P(2) = 3.4e-24
Identities = 14/50 (28%), Positives = 27/50 (54%)
Query: 421 VQNIDRKIYLLPRSEHLK-TKEPVSIAQVYSEFDQIATQYKILDFKSRKI 469
+ N D YLL R++HLK T P ++ + + ++ K +F S+++
Sbjct: 393 IANFDFP-YLLDRAKHLKCTNFPY-----WTRLNGMRSEAKDTNFSSKQM 436
>UNIPROTKB|Q8X0N7 [details] [associations]
symbol:B10H4.020 "DNA polymerase" species:5141 "Neurospora
crassa" [GO:0000084 "S phase of mitotic cell cycle" evidence=IBA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IBA]
[GO:0005634 "nucleus" evidence=IBA] [GO:0006287 "base-excision
repair, gap-filling" evidence=IBA] [GO:0006297 "nucleotide-excision
repair, DNA gap filling" evidence=IBA] [GO:0007346 "regulation of
mitotic cell cycle" evidence=IBA] [GO:0008408 "3'-5' exonuclease
activity" evidence=IBA] [GO:0043137 "DNA replication, removal of
RNA primer" evidence=IBA] [GO:0043625 "delta DNA polymerase
complex" evidence=IBA] [GO:0045004 "DNA replication proofreading"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0007346 GO:GO:0000166 GO:GO:0003677
SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408 GO:GO:0043137
GO:GO:0003887 GO:GO:0006297 eggNOG:COG0417 GO:GO:0045004
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0006287
TIGRFAMs:TIGR00592 InterPro:IPR025687 Pfam:PF14260
HOGENOM:HOG000036616 GO:GO:0043625 OrthoDB:EOG4B01XB HSSP:Q56366
EMBL:AL670010 ProteinModelPortal:Q8X0N7 STRING:Q8X0N7
Uniprot:Q8X0N7
Length = 1104
Score = 320 (117.7 bits), Expect = 9.0e-24, Sum P(2) = 9.0e-24
Identities = 119/415 (28%), Positives = 193/415 (46%)
Query: 626 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT-IPVRMLQDSDITTLCEYL- 683
Y G V+EP +G+YD I +DF SLYPSI+Q +N+C+TT I R ++ D+ +Y+
Sbjct: 577 YEGATVIEPTRGYYDVPIATLDFASLYPSIMQAHNLCYTTLIKKRDIERWDLKKDEDYIV 636
Query: 684 -PEHQ--VDT----GILPSEIKKLVESRRQVK---ALMKQPNLSSDLLMQYDIRQKALKL 733
P V T G+L +++L+ +R+Q K A+ K P + L + RQ ALK+
Sbjct: 637 TPNGDMFVTTKQRKGLLAQILEELLSARKQAKRELAVEKDPFKKAVL----NGRQLALKV 692
Query: 734 TANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISCN 793
+ANS+YG G N + +A+ VT+ GR+++ TK VE Y + G + +
Sbjct: 693 SANSVYGLTGATNGKLPCLEIASSVTSFGRQMIERTKKEVEE-RYTIANGYSHDAQVI-- 749
Query: 794 VNDYDSVF-KIGNQIKSECNKLYKQLELDIDG---------VXXXXXXXXXXXXXXXXXX 843
D DSV K G + +E KL + + G
Sbjct: 750 YGDTDSVMVKFGTKDLAEAMKLGQDASEYVSGKFIKPIKLEFEKVYFPYLLINKKRYAGL 809
Query: 844 XXXNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHM 903
+ + KG++ VRRD L + V+ IL +D + ++
Sbjct: 810 YWTKPEKYDKMDTKGIETVRRDNCLLVQTVIEKVLRMIL---------IDQDVPGAQAYV 860
Query: 904 KKIRTDLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQ-GDTI 962
K DL + ++ L ITK LTK E Y ++A HV++A R+ ++ GD +
Sbjct: 861 KDTIADLLQNKIDMSKLVITKALTK--ENYDAKQA--HVELAQRMKKRDAGSAPGLGDRV 916
Query: 963 SYIICEDGTSEAATQRAYN-IEELKNNSKLKIDVNYYLSQQIHPVVTRLLEPIEG 1016
+Y++ + T +R+ + I L++N + ID YYL Q+ + R+ EPI G
Sbjct: 917 AYVMVKGATGSKNFERSEDPIYVLEHN--VPIDTKYYLDNQLAKPLGRIFEPILG 969
Score = 46 (21.3 bits), Expect = 9.0e-24, Sum P(2) = 9.0e-24
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 421 VQNIDRKIYLLPRSEHLKTKE 441
+ N D YLL R++HLK K+
Sbjct: 394 IANFDFP-YLLDRAKHLKVKD 413
Score = 41 (19.5 bits), Expect = 3.0e-23, Sum P(2) = 3.0e-23
Identities = 11/46 (23%), Positives = 22/46 (47%)
Query: 517 FLENLLLERKIKGPSWLEFPEA--EKFPSRISWCKYEVQCNQMEKI 560
+L +++ I G SW+E P + + S C+ E + + + I
Sbjct: 247 YLLRFMVDCSIAGMSWVEAPAGSYQLVNDKHSNCQIEAEMSYRDLI 292
>UNIPROTKB|Q7RSZ8 [details] [associations]
symbol:PY00203 "DNA polymerase" species:73239 "Plasmodium
yoelii yoelii" [GO:0000084 "S phase of mitotic cell cycle"
evidence=IBA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0006287
"base-excision repair, gap-filling" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0007346 "regulation of mitotic cell cycle" evidence=IBA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IBA] [GO:0043137
"DNA replication, removal of RNA primer" evidence=IBA] [GO:0043625
"delta DNA polymerase complex" evidence=IBA] [GO:0045004 "DNA
replication proofreading" evidence=IBA] [GO:0019985 "translesion
synthesis" evidence=IBA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0007346 GO:GO:0000166
GO:GO:0003677 SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408
GO:GO:0043137 GO:GO:0003887 GO:GO:0006297 eggNOG:COG0417
GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0006287
TIGRFAMs:TIGR00592 KO:K02327 InterPro:IPR025687 Pfam:PF14260
GO:GO:0043625 EMBL:AABL01000054 RefSeq:XP_729844.1
ProteinModelPortal:Q7RSZ8 STRING:Q7RSZ8 PRIDE:Q7RSZ8 GeneID:3807142
KEGG:pyo:PY00203 EuPathDB:PlasmoDB:PY00203 Uniprot:Q7RSZ8
Length = 1097
Score = 311 (114.5 bits), Expect = 6.5e-23, Sum P(2) = 6.5e-23
Identities = 117/388 (30%), Positives = 193/388 (49%)
Query: 671 LQDSDITTL-----CEYLPEHQVDTGILPSEIKKLVESRRQVKALMK-QPNLSSDLLMQY 724
L +DITT+ +++ + V G+LP +++L+ +R+ VKA+MK + N + +++
Sbjct: 630 LNKNDITTVPGKNNFKFV-KGNVKRGVLPLIVEELIRARKNVKAMMKNEQNPITKMVLNG 688
Query: 725 DIRQKALKLTANSMYGCLGFP-NSRFFAQPLAALVTAKGREILLNTKSLVE-----NLNY 778
RQ ALK++ANS+YG G + +A +T GR ++ TK VE N +
Sbjct: 689 --RQLALKISANSVYGYTGAAAGGQLPCLEIATSITTFGRSMIEKTKETVEAYYCKNNGF 746
Query: 779 E----VIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVXXXXXXXX 833
E V+YGDTDS+M+ ND ++G +K + ++L+ + V
Sbjct: 747 EHNATVVYGDTDSVMVKFGTNDVGEAMRLGKDAAERISKEFLHPIKLEFEKVYCPYLLLN 806
Query: 834 XXXXXXXXXXX-XXNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSL 892
+ KM C KG++ VRRD+ L + + V++++L E+
Sbjct: 807 KKRYAGLLYTNPNKHDKMDC----KGIETVRRDFCILIQQMMETVLNKLLIEKD------ 856
Query: 893 DDRLQNIHEHMK-KIRTDLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNT 951
L + E+ K KI+ L N + ++LL +TK L KA EY R LPHV++A +L
Sbjct: 857 ---LNSAIEYTKSKIKDLLTNN-IDMSLLVVTKSLGKA--EYETR--LPHVELAKKLKQR 908
Query: 952 NSKKLKQ-GDTISYIICEDGTSEAATQRAYN-IEELKNNSKLKIDVNYYLSQQIHPVVTR 1009
+S GD +SYII + +A +RA + + L NN L ID N+YL +P+ +R
Sbjct: 909 DSATAPNVGDRVSYIIIKGTKGQAQYERAEDPLYVLDNN--LSIDHNHYLDAIKNPL-SR 965
Query: 1010 LLEPI-EGTDAVRIAECLGLDTSLYRSQ 1036
+ E I + +D++ E T L SQ
Sbjct: 966 IFEVIMQNSDSLFCGEHTRHKTILTSSQ 993
Score = 214 (80.4 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
Identities = 67/206 (32%), Positives = 108/206 (52%)
Query: 626 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI-----PVRMLQDSDITTL- 679
+ G VLEP KG+Y + I +DF SLYPSI+ +N+C++T+ + L +DITT+
Sbjct: 580 FEGATVLEPIKGYYIEPISTLDFASLYPSIMIAHNLCYSTLIKNNDEISDLNKNDITTVP 639
Query: 680 ----CEYLPEHQVDTGILPSEIKKLVESRRQVKALMK-QPNLSSDLLMQYDIRQKALKLT 734
+++ + V G+LP +++L+ +R+ VKA+MK + N + +++ RQ ALK++
Sbjct: 640 GKNNFKFV-KGNVKRGVLPLIVEELIRARKNVKAMMKNEQNPITKMVLNG--RQLALKIS 696
Query: 735 ANSMYGCLGFP-NSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISCN 793
ANS+YG G + +A +T GR ++ TK VE Y + +
Sbjct: 697 ANSVYGYTGAAAGGQLPCLEIATSITTFGRSMIEKTKETVE-----AYYCKNNGFEHNAT 751
Query: 794 V--NDYDSVF-KIGNQIKSECNKLYK 816
V D DSV K G E +L K
Sbjct: 752 VVYGDTDSVMVKFGTNDVGEAMRLGK 777
Score = 47 (21.6 bits), Expect = 6.5e-23, Sum P(2) = 6.5e-23
Identities = 21/82 (25%), Positives = 35/82 (42%)
Query: 460 KILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPALPSDL-SGDTFS--H----VFG 512
KIL ++ K E F G D + + V P+L SG + H V+
Sbjct: 181 KILKIETVKTESIMYFKKSGKTDFLK-ITVLLPKMVPSLKKFFESGINVNSKHFGGIVYE 239
Query: 513 TKSSFLENLLLERKIKGPSWLE 534
F+ ++++KI G SW++
Sbjct: 240 ANLPFILRYIIDKKITGSSWIK 261
>UNIPROTKB|Q755K6 [details] [associations]
symbol:AGOS_AFL189W "DNA polymerase" species:284811 "Ashbya
gossypii ATCC 10895" [GO:0000084 "S phase of mitotic cell cycle"
evidence=IBA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0006287
"base-excision repair, gap-filling" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0007346 "regulation of mitotic cell cycle" evidence=IBA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IBA] [GO:0043137
"DNA replication, removal of RNA primer" evidence=IBA] [GO:0043625
"delta DNA polymerase complex" evidence=IBA] [GO:0045004 "DNA
replication proofreading" evidence=IBA] [GO:0019985 "translesion
synthesis" evidence=IBA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0007346 GO:GO:0000166
GO:GO:0003677 SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408
GO:GO:0043137 GO:GO:0003887 GO:GO:0006297 GO:GO:0045004
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0006287
TIGRFAMs:TIGR00592 KO:K02327 InterPro:IPR025687 Pfam:PF14260
HOGENOM:HOG000036616 GO:GO:0043625 OrthoDB:EOG4B01XB EMBL:AE016819
GenomeReviews:AE016819_GR RefSeq:NP_985361.2 STRING:Q755K6
EnsemblFungi:AAS53185 GeneID:4621586 KEGG:ago:AGOS_AFL189W
Uniprot:Q755K6
Length = 1092
Score = 288 (106.4 bits), Expect = 4.7e-21, Sum P(3) = 4.7e-21
Identities = 125/437 (28%), Positives = 202/437 (46%)
Query: 626 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI----PVRMLQ-----DSDI 676
Y G V+EP +G+YD I +DFNSLYPSI+ +N+C+TT+ V+ LQ D I
Sbjct: 582 YQGATVIEPIRGYYDIPIATLDFNSLYPSIMMAHNLCYTTLCNKATVQRLQLKENEDYII 641
Query: 677 TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPN--LSSDLLMQYDIRQKALKLT 734
T +Y + GILP +++L+ +R++ K +K+ D+L + RQ ALK++
Sbjct: 642 TPNGDYFVTSKKRRGILPIILEELIAARQRAKGELKKETDPFKKDVL---NGRQLALKIS 698
Query: 735 ANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYG-DTDSLMISCN 793
ANS+YG G + +++ VTA GR ++ TK VE Y + G D++++
Sbjct: 699 ANSVYGFTGATVGKLPCLSISSSVTAYGRTMIETTKRAVEE-KYTIKNGYKHDAIVV--- 754
Query: 794 VNDYDSVFKIGNQIKSECNKLYKQLELDIDGVXXXXXXXXXXXXXXXXXXXX----XNGK 849
D DSV IK N+L + +EL + N K
Sbjct: 755 YGDTDSVM-----IKFGTNELKQTMELGAEAAAYVSSLFKHPINLEFEKVYFPYLLINKK 809
Query: 850 MICSQ-----------EIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQN 898
+ KG+ VRRD L S ++ IL E++ +L ++N
Sbjct: 810 RYAGLYWTKPEKYDKLDQKGLASVRRDSCPLVSIVMNKILRMILIERNVPG-ALKF-VEN 867
Query: 899 IHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQ 958
E + + + D+ L I+K L AP YT+ A PH +A R+ +
Sbjct: 868 TIEDLLQNKADISK-------LIISKTL--APN-YTN--AQPHAILAERMKKRDGVGPNV 915
Query: 959 GDTISYIICEDGTSEAATQRAYN-IEELKNNSKLKIDVNYYLSQQIHPVVTRLLEPIEG- 1016
GD + Y+I G ++ RA N + L+ N +++D YYL+ Q+ V ++ PI G
Sbjct: 916 GDRVDYVII--GGNDKLYNRAENPLYVLEQN--IQLDSKYYLTTQLQNPVVSIIAPIIGE 971
Query: 1017 --TDAVRIAECLGLDTS 1031
+A+ I + + + TS
Sbjct: 972 KQANAMFIVKSIKIATS 988
Score = 62 (26.9 bits), Expect = 4.7e-21, Sum P(3) = 4.7e-21
Identities = 42/188 (22%), Positives = 76/188 (40%)
Query: 387 LDAFEDI---YKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYL-LPRSEHLKTKEP 442
LDA + + Y GT + + F HS C + +Y+ P + +T P
Sbjct: 114 LDAEQAVLPGYIDGGTSAVV-RFFGVTEQGHSVLCSVT-GFKHYMYVPAPANFDARTDVP 171
Query: 443 VSIAQVYSEFDQIATQYKILDFKS---RKIEKKYAFNLPGVPDLSEYLEVRYS-AKCPAL 498
V + + FD + ++ +S ++K F V D ++R + K
Sbjct: 172 VLVDYLNDMFDGVVDSVEVCQKQSIWGYSGDQKLQFLKVLVADPYGLNKIRTAFEKGYIT 231
Query: 499 PSD--LSGDTFSHVFGTKSSFLENLLLERKIKGPSWLEFPEAE--KFPS--RISWCKYEV 552
P+D G T ++ ++ L+++ I G SW+ P+ + P +IS C+ EV
Sbjct: 232 PNDTWFQGGTTTY---DNIAYTLRLMIDCGIVGMSWITLPKGKYAMIPKNKKISTCQLEV 288
Query: 553 QCNQMEKI 560
N + I
Sbjct: 289 SINYKDLI 296
Score = 39 (18.8 bits), Expect = 4.7e-21, Sum P(3) = 4.7e-21
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 66 DLKGQGVKHKYEFTADENVYEEVSEKEYTERVL 98
D KG G +E + +E + +E ++VL
Sbjct: 60 DTKGNGDATLFEHELQQMEHESAAAQERNQQVL 92
>POMBASE|SPBC336.04 [details] [associations]
symbol:cdc6 "DNA polymerase delta catalytic subunit Cdc6"
species:4896 "Schizosaccharomyces pombe" [GO:0000731 "DNA synthesis
involved in DNA repair" evidence=TAS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0008408 "3'-5' exonuclease
activity" evidence=IC] [GO:0010972 "negative regulation of G2/M
transition of mitotic cell cycle" evidence=IMP] [GO:0043137 "DNA
replication, removal of RNA primer" evidence=TAS] [GO:0043596
"nuclear replication fork" evidence=IC] [GO:0043625 "delta DNA
polymerase complex" evidence=TAS] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 PomBase:SPBC336.04 GO:GO:0000166
GO:GO:0046872 GO:GO:0003677 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0051539 SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0000731
GO:GO:0043137 GO:GO:0010972 GO:GO:0003887 eggNOG:COG0417
Gene3D:3.90.1600.10 InterPro:IPR023211 TIGRFAMs:TIGR00592 KO:K02327
InterPro:IPR025687 Pfam:PF14260 HOGENOM:HOG000036616 OMA:MIEQTKQ
GO:GO:0043625 EMBL:X59278 EMBL:L07734 EMBL:AB027796 PIR:S19661
PIR:T40242 PIR:T43266 RefSeq:NP_596124.1 ProteinModelPortal:P30316
IntAct:P30316 STRING:P30316 EnsemblFungi:SPBC336.04.1
GeneID:2540255 KEGG:spo:SPBC336.04 OrthoDB:EOG4B01XB
NextBio:20801385 Uniprot:P30316
Length = 1086
Score = 289 (106.8 bits), Expect = 9.2e-21, Sum P(3) = 9.2e-21
Identities = 103/368 (27%), Positives = 174/368 (47%)
Query: 668 VRMLQDSD--ITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKA-LMKQPNLSSDLLMQY 724
+++ QD D +T +Y + V G+LP + L+ +R++ KA L K+ + ++
Sbjct: 615 LKLKQDVDYSVTPNGDYFVKPHVRKGLLPIILADLLNARKKAKADLKKETDPFKKAVL-- 672
Query: 725 DIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENL-----NYE 779
D RQ ALK++ANS+YG G N R +++ VT+ GR+++ TK +VE Y
Sbjct: 673 DGRQLALKVSANSVYGFTGATNGRLPCLAISSSVTSYGRQMIEKTKDVVEKRYRIENGYS 732
Query: 780 ----VIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVXXXXXXXXX 834
VIYGDTDS+M+ V K+G + + + + ++L+ + V
Sbjct: 733 HDAVVIYGDTDSVMVKFGVKTLPEAMKLGEEAANYVSDQFPNPIKLEFEKVYFPYLLISK 792
Query: 835 XXXXXXXXXXXXN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLD 893
KM + KG++ VRRD L S +VI L + +D
Sbjct: 793 KRYAGLFWTRTDTYDKM----DSKGIETVRRDNCPLVS----YVIDTALRKML-----ID 839
Query: 894 DRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNS 953
++ KK+ +DL + ++ L ITK L+K +Y + A HV++A R+ ++
Sbjct: 840 QDVEGAQLFTKKVISDLLQNKIDMSQLVITKALSKT--DYAAKMA--HVELAERMRKRDA 895
Query: 954 KKLKQ-GDTISYIICEDGTSEAATQRAYN-IEELKNNSKLKIDVNYYLSQQIHPVVTRLL 1011
GD ++Y+I + + R+ + I L+NN + ID YYL Q+ + R+
Sbjct: 896 GSAPAIGDRVAYVIIKGAQGDQFYMRSEDPIYVLENN--IPIDAKYYLENQLSKPLLRIF 953
Query: 1012 EPIEGTDA 1019
EPI G A
Sbjct: 954 EPILGEKA 961
Score = 265 (98.3 bits), Expect = 2.1e-18, Sum P(3) = 2.1e-18
Identities = 73/201 (36%), Positives = 115/201 (57%)
Query: 626 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP-------VRMLQDSD--I 676
Y G V+EP KG+YD I +DF+SLYPSI+Q +N+C+TT+ +++ QD D +
Sbjct: 566 YEGATVIEPIKGYYDTPIATLDFSSLYPSIMQAHNLCYTTLLDSNTAELLKLKQDVDYSV 625
Query: 677 TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKA-LMKQPNLSSDLLMQYDIRQKALKLTA 735
T +Y + V G+LP + L+ +R++ KA L K+ + ++ D RQ ALK++A
Sbjct: 626 TPNGDYFVKPHVRKGLLPIILADLLNARKKAKADLKKETDPFKKAVL--DGRQLALKVSA 683
Query: 736 NSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDT-DSLMISCNV 794
NS+YG G N R +++ VT+ GR+++ TK +VE Y + G + D+++I
Sbjct: 684 NSVYGFTGATNGRLPCLAISSSVTSYGRQMIEKTKDVVEK-RYRIENGYSHDAVVI---Y 739
Query: 795 NDYDSVF-KIGNQIKSECNKL 814
D DSV K G + E KL
Sbjct: 740 GDTDSVMVKFGVKTLPEAMKL 760
Score = 59 (25.8 bits), Expect = 9.2e-21, Sum P(3) = 9.2e-21
Identities = 11/55 (20%), Positives = 29/55 (52%)
Query: 511 FGTKSSFLENLLLERKIKGPSWLEFPEAE---KFPSRISWCKYEVQCNQMEKIRI 562
F + + +L +++ + G +W+ P ++ ++ +R+S C+ E N + I +
Sbjct: 228 FESNTQYLLRFMIDCDVVGMNWIHLPASKYQFRYQNRVSNCQIEAWINYKDLISL 282
Score = 40 (19.1 bits), Expect = 2.1e-18, Sum P(3) = 2.1e-18
Identities = 27/128 (21%), Positives = 50/128 (39%)
Query: 1077 VNTVEAPTRLSTHGVVFVLDECINPECKVPPYTYLPHLINKLSQDMNKYIVKYYEGWLKC 1136
V T+ +L +V D+ NP Y P+L+ + + + + + K
Sbjct: 751 VKTLPEAMKLGEEAANYVSDQFPNPIKLEFEKVYFPYLLISKKRYAGLFWTRT-DTYDKM 809
Query: 1137 EDPGCSDLTR-RCPLGLKTRLCTTCHKYKLHRVYTELQLYQQLSFFHYICD--------I 1187
+ G + R CPL + + T K + + QL+ + + + I
Sbjct: 810 DSKGIETVRRDNCPL-VSYVIDTALRKMLIDQDVEGAQLFTKKVISDLLQNKIDMSQLVI 868
Query: 1188 TKALTKSD 1195
TKAL+K+D
Sbjct: 869 TKALSKTD 876
Score = 38 (18.4 bits), Expect = 9.2e-21, Sum P(3) = 9.2e-21
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 653 PSIIQEYNICFTTIP 667
P ++ YNIC IP
Sbjct: 374 PDVLIGYNICNFDIP 388
>SGD|S000002260 [details] [associations]
symbol:POL3 "Catalytic subunit of DNA polymerase delta"
species:4932 "Saccharomyces cerevisiae" [GO:0004527 "exonuclease
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA;IMP] [GO:0016740
"transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=NAS]
[GO:0006273 "lagging strand elongation" evidence=TAS] [GO:0006284
"base-excision repair" evidence=TAS] [GO:0043625 "delta DNA
polymerase complex" evidence=IBA;TAS] [GO:0006301 "postreplication
repair" evidence=TAS] [GO:0006272 "leading strand elongation"
evidence=TAS] [GO:0006289 "nucleotide-excision repair"
evidence=TAS] [GO:0008310 "single-stranded DNA specific 3'-5'
exodeoxyribonuclease activity" evidence=TAS] [GO:0045005
"maintenance of fidelity involved in DNA-dependent DNA replication"
evidence=IGI] [GO:0090305 "nucleic acid phosphodiester bond
hydrolysis" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA;IMP;IDA] [GO:0043137 "DNA replication,
removal of RNA primer" evidence=IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0051536 "iron-sulfur cluster binding" evidence=IEA] [GO:0051539
"4 iron, 4 sulfur cluster binding" evidence=IEA] [GO:0005657
"replication fork" evidence=IDA] [GO:0045004 "DNA replication
proofreading" evidence=IBA] [GO:0007346 "regulation of mitotic cell
cycle" evidence=IBA] [GO:0000084 "S phase of mitotic cell cycle"
evidence=IBA] [GO:0006287 "base-excision repair, gap-filling"
evidence=IBA] [GO:0008296 "3'-5'-exodeoxyribonuclease activity"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0006278 "RNA-dependent DNA replication"
evidence=IDA] [GO:0004518 "nuclease activity" evidence=IEA]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 SGD:S000002260 GO:GO:0007346 GO:GO:0000166
GO:GO:0046872 GO:GO:0003677 EMBL:BK006938 GO:GO:0051539
GO:GO:0006298 SUPFAM:SSF53098 GO:GO:0006278 GO:GO:0000084
GO:GO:0006301 EMBL:X95644 GO:GO:0043137 GO:GO:0003887 GO:GO:0006297
GO:GO:0006272 eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10
InterPro:IPR023211 GO:GO:0006287 TIGRFAMs:TIGR00592 KO:K02327
InterPro:IPR025687 Pfam:PF14260 GeneTree:ENSGT00560000077365
HOGENOM:HOG000036616 OMA:MIEQTKQ GO:GO:0043625 OrthoDB:EOG4B01XB
EMBL:X15477 EMBL:X61920 EMBL:Z74150 PIR:S67644 RefSeq:NP_010181.2
PDB:3IAY PDBsum:3IAY ProteinModelPortal:P15436 SMR:P15436
DIP:DIP-2524N IntAct:P15436 MINT:MINT-2781941 STRING:P15436
PaxDb:P15436 PeptideAtlas:P15436 EnsemblFungi:YDL102W GeneID:851456
KEGG:sce:YDL102W CYGD:YDL102w NextBio:968726 Genevestigator:P15436
GermOnline:YDL102W GO:GO:0008310 Uniprot:P15436
Length = 1097
Score = 225 (84.3 bits), Expect = 1.5e-19, Sum P(3) = 1.5e-19
Identities = 67/192 (34%), Positives = 104/192 (54%)
Query: 626 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI----PVRMLQ---DSD--I 676
Y G V+EP +G+YD I +DFNSLYPSI+ +N+C+TT+ V L D D I
Sbjct: 587 YEGATVIEPIRGYYDVPIATLDFNSLYPSIMMAHNLCYTTLCNKATVERLNLKIDEDYVI 646
Query: 677 TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPN--LSSDLLMQYDIRQKALKLT 734
T +Y + GILP + +L+ +R++ K ++ D+L + RQ ALK++
Sbjct: 647 TPNGDYFVTTKRRRGILPIILDELISARKRAKKDLRDEKDPFKRDVL---NGRQLALKIS 703
Query: 735 ANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYG-DTDSLMISCN 793
ANS+YG G + +++ VTA GR ++L TK+ V+ Y + G D++++
Sbjct: 704 ANSVYGFTGATVGKLPCLAISSSVTAYGRTMILKTKTAVQE-KYCIKNGYKHDAVVV--- 759
Query: 794 VNDYDSVF-KIG 804
D DSV K G
Sbjct: 760 YGDTDSVMVKFG 771
Score = 204 (76.9 bits), Expect = 3.4e-12, Sum P(2) = 3.4e-12
Identities = 87/335 (25%), Positives = 149/335 (44%)
Query: 644 ILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVES 703
I+M N Y ++ + + + +++ +D IT +Y + GILP + +L+ +
Sbjct: 616 IMMAHNLCYTTLCNKATV--ERLNLKIDEDYVITPNGDYFVTTKRRRGILPIILDELISA 673
Query: 704 RRQVKALMKQPN--LSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAK 761
R++ K ++ D+L + RQ ALK++ANS+YG G + +++ VTA
Sbjct: 674 RKRAKKDLRDEKDPFKRDVL---NGRQLALKISANSVYGFTGATVGKLPCLAISSSVTAY 730
Query: 762 GREILLNTKSLVENL-----NYE----VIYGDTDSLMISCNVNDYDSVFKIGNQIKSECN 812
GR ++L TK+ V+ Y+ V+YGDTDS+M+ D +G + +
Sbjct: 731 GRTMILKTKTAVQEKYCIKNGYKHDAVVVYGDTDSVMVKFGTTDLKEAMDLGTEAAKYVS 790
Query: 813 KLYKQ-LELDIDGVXXXXXXXXXXXXXXXXXXXXXNGKMICSQEIKGVDVVRRDWSQLAS 871
L+K + L+ + N + KG+ VRRD L S
Sbjct: 791 TLFKHPINLEFE---KAYFPYLLINKKRYAGLFWTNPDKFDKLDQKGLASVRRDSCSLVS 847
Query: 872 EAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 931
V+ +IL E++ +D L + E + I L N V ++ L I+K L AP
Sbjct: 848 IVMNKVLKKILIERN-----VDGALAFVRETINDI---LHNR-VDISKLIISKTL--APN 896
Query: 932 EYTDRKALPHVQVALRLNNTNSKKLKQGDTISYII 966
YT+ + PH +A R+ GD + Y+I
Sbjct: 897 -YTNPQ--PHAVLAERMKRREGVGPNVGDRVDYVI 928
Score = 98 (39.6 bits), Expect = 1.5e-19, Sum P(3) = 1.5e-19
Identities = 42/173 (24%), Positives = 86/173 (49%)
Query: 877 VISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEEYTDR 936
V++++L ++ + ++D L + E + I L N V ++ L I+K L AP YT+
Sbjct: 849 VMNKVL-KKILIERNVDGALAFVRETINDI---LHNR-VDISKLIISKTL--APN-YTNP 900
Query: 937 KALPHVQVALRLNNTNSKKLKQGDTISYIICEDGTSEAATQRAYN-IEELKNNSKLKIDV 995
+ PH +A R+ GD + Y+I G ++ RA + + L+NN +++D
Sbjct: 901 Q--PHAVLAERMKRREGVGPNVGDRVDYVII--GGNDKLYNRAEDPLFVLENN--IQVDS 954
Query: 996 NYYLSQQIHPVVTRLLEPIEG---TDAVRIAECLGLDTSLYRSQIKESIQQSE 1045
YYL+ Q+ + ++ PI G + + + + + ++T + + I++ E
Sbjct: 955 RYYLTNQLQNPIISIVAPIIGDKQANGMFVVKSIKINTGSQKGGLMSFIKKVE 1007
Score = 54 (24.1 bits), Expect = 1.5e-19, Sum P(3) = 1.5e-19
Identities = 45/227 (19%), Positives = 90/227 (39%)
Query: 346 EWEAIQTEPSTSEPQVHSRTADDSLPLATDHENKKVFRMFF--LDAFEDIY---KQPGTV 400
E E Q E ++ + H ++ + L TD + ++ + F +DA + + K T
Sbjct: 76 EQELSQMEHDMADQEEHDLSSFERKKLPTDFD-PSLYDISFQQIDAEQSVLNGIKDENTS 134
Query: 401 YLFGKVFVKENNSHSSCCVIVQNIDRKIYL-LPRSEHLKTKEPVS--IAQVYSEFDQIAT 457
+ + F + HS C + +Y+ P S +E ++ + + FD
Sbjct: 135 TVV-RFFGVTSEGHSVLCNVT-GFKNYLYVPAPNSSDANDQEQINKFVHYLNETFDHAID 192
Query: 458 QYKILDFKS---RKIEKKYAFNLPGV--PDLSEYLEVRYSAKCPALPSDLSGDTFSHVFG 512
+++ +S + K F V P + L + + S S T ++
Sbjct: 193 SIEVVSKQSIWGYSGDTKLPFWKIYVTYPHMVNKLRTAFERGHLSFNSWFSNGTTTY--- 249
Query: 513 TKSSFLENLLLERKIKGPSWLEFPEAEKF---PS-RISWCKYEVQCN 555
++ L+++ I G SW+ P+ + P+ R+S C+ EV N
Sbjct: 250 DNIAYTLRLMVDCGIVGMSWITLPKGKYSMIEPNNRVSSCQLEVSIN 296
Score = 39 (18.8 bits), Expect = 5.3e-18, Sum P(3) = 5.3e-18
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 49 RQKIDKTNKFAAFQKLKDLKGQGVK 73
R K K N F F +LK +K Q +K
Sbjct: 414 RAKALKVNDFPYFGRLKTVK-QEIK 437
>UNIPROTKB|K7GQ23 [details] [associations]
symbol:LOC100627036 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR006133
InterPro:IPR012337 Pfam:PF03104 SUPFAM:SSF53098
GeneTree:ENSGT00550000074891 EMBL:CU207412 EMBL:FP339588
Ensembl:ENSSSCT00000035548 Uniprot:K7GQ23
Length = 135
Score = 191 (72.3 bits), Expect = 8.0e-19, Sum P(2) = 8.0e-19
Identities = 40/104 (38%), Positives = 58/104 (55%)
Query: 487 LEVRYSAKCPALPSDLSGDTFSHVFGTKSSFLENLLLERKIKGPSWLEFPEAEKFPSRIS 546
++ + A+ P LP DL G+TFSHVFGT +S LE L+ RKIKGP WLE + IS
Sbjct: 32 MKFKSKAEMPQLPQDLKGETFSHVFGTNTSSLELFLMNRKIKGPCWLEVKNPQLLNQPIS 91
Query: 547 WCKYEVQCNQMEKIRITNVCGN----VLS---RTLMGGRSERNE 583
WCK+E + + + + G V+S +T+ ++ NE
Sbjct: 92 WCKFEAMALKPDLVNVIKDVGPPPLVVMSLSMKTMQNAKTHENE 135
Score = 76 (31.8 bits), Expect = 8.0e-19, Sum P(2) = 8.0e-19
Identities = 15/27 (55%), Positives = 21/27 (77%)
Query: 442 PVSIAQVYSEFDQ-IATQYKILDFKSR 467
PV++ VY EFD+ IA +YKI+ FKS+
Sbjct: 11 PVTMKDVYDEFDEKIAAKYKIMKFKSK 37
>TIGR_CMR|SO_1820 [details] [associations]
symbol:SO_1820 "DNA polymerase II" species:211586
"Shewanella oneidensis MR-1" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=ISS] [GO:0006260 "DNA replication"
evidence=ISS] InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
EMBL:AE014299 GenomeReviews:AE014299_GR SUPFAM:SSF53098
GO:GO:0003887 HOGENOM:HOG000221829 KO:K02336 OMA:VLDGIDW
ProtClustDB:PRK05762 Gene3D:3.90.1600.10 InterPro:IPR023211
HSSP:P21189 RefSeq:NP_717428.1 ProteinModelPortal:Q8EFZ4
GeneID:1169593 KEGG:son:SO_1820 PATRIC:23523263 Uniprot:Q8EFZ4
Length = 808
Score = 264 (98.0 bits), Expect = 8.4e-19, P = 8.4e-19
Identities = 111/402 (27%), Positives = 177/402 (44%)
Query: 628 GGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDS----DITTLCEYL 683
GG V++ GFY + I++ DF SLYPSII+ + I + + DS + T+ +L
Sbjct: 423 GGYVMDSVPGFY-QHILVFDFKSLYPSIIRTFLIDPKGLIEGLGDDSLVLDESETVTGFL 481
Query: 684 -PEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCL 742
ILP I+ L E R + K P LS +A+K+ NS+YG L
Sbjct: 482 GARFSRRQPILPKLIQTLSEQREKAKREANAP-LS-----------QAIKIIMNSLYGVL 529
Query: 743 GFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVN-DYDSVF 801
G F LA+ +T +G +I+ T++ +E + Y+VIYGDTDS + D +
Sbjct: 530 GSQGCVFHDAKLASSITMRGHQIMKQTRAWIEEMGYQVIYGDTDSTFVHLGYEPDLSDIS 589
Query: 802 KIGNQIKSECN-----KLYKQ------LELDIDGVXXXXXXXXXXXXXXXXXXXXXNGKM 850
+G QI ++ N K+ K LEL +
Sbjct: 590 ALGKQIAAQINANWQAKITKDFELESFLELQFERHYEQFFMPTLRGSEEGSKKRYVGAWR 649
Query: 851 ICSQEI----KGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKI 906
S E+ KG++ VR DWS LA + + ++ +++ + Y L ++ ++
Sbjct: 650 NVSGELEITFKGMEQVRSDWSPLARKVQAELYERMFNQRDISGY-----LADVIGELQAG 704
Query: 907 RTDLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKL--KQGDTISY 964
+ D D L +K++ + EEYT K+ PHV+VA +L K K+G I Y
Sbjct: 705 KRD-DE-------LIFSKRMRRNLEEYT-AKSSPHVKVARQLCELTGKASYSKRGAQIDY 755
Query: 965 IICEDGTSEAATQRAYNIEELKNNSKLKIDVNYYLSQQIHPV 1006
+I +G E + + S ID YY+ +QI P+
Sbjct: 756 VITVNGP-----------EPVSHRSST-IDYQYYIDKQIGPI 785
>UNIPROTKB|A6V6S5 [details] [associations]
symbol:polB "DNA polymerase" species:381754 "Pseudomonas
aeruginosa PA7" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IBA] [GO:0005694 "chromosome" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IBA] [GO:0019985
"translesion synthesis" evidence=IBA] InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0005694 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 EMBL:CP000744 GenomeReviews:CP000744_GR
SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0003887 GO:GO:0006297
eggNOG:COG0417 HOGENOM:HOG000221829 KO:K02336 ProtClustDB:PRK05762
GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211
RefSeq:YP_001348760.1 ProteinModelPortal:A6V6S5 SMR:A6V6S5
STRING:A6V6S5 GeneID:5354072 KEGG:pap:PSPA7_3400 PATRIC:19828452
OMA:SATWSFP BioCyc:PAER381754:GHMY-3442-MONOMER Uniprot:A6V6S5
Length = 788
Score = 255 (94.8 bits), Expect = 7.5e-18, P = 7.5e-18
Identities = 107/427 (25%), Positives = 182/427 (42%)
Query: 621 RKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLC 680
++ A GG V++ + G Y+ ++L D+ SLYPSII+ + I + + Q D ++
Sbjct: 397 KRPEASPGGFVMDSRPGLYESVLVL-DYKSLYPSIIRTFLIDPVGLVEGLRQPDDEHSVE 455
Query: 681 EYLPEHQVDTG-ILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMY 739
+ T LP+ + ++ E R K QP LS +ALK+ N+ Y
Sbjct: 456 GFRGARFSRTRHCLPAIVARVWEGREAAKRERNQP-LS-----------QALKIIMNAFY 503
Query: 740 GCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISC-NVNDYD 798
G LG RFF LA+ +T +G I+ T+ L+E Y VIYGDTDS + + + +
Sbjct: 504 GVLGSSGCRFFDPRLASSITLRGHRIMRRTRELIEAEGYTVIYGDTDSTFVWLGSPHAEE 563
Query: 799 SVFKIGNQIKSECNKLYKQ-----------LELDIDGVXXXXXXXXXXXXXXXXXXXXXN 847
IG + + N +++ LEL +
Sbjct: 564 EAAAIGRALVARVNDWWREHLKEEFGLASALELQFETHYRRFLMPTVRGAEEGSKKRYAG 623
Query: 848 --GKMICSQEI--KGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHM 903
+ +E+ KG++ VR DWS LA + + +I + Q Y DY + +++
Sbjct: 624 LVRRADGGEEMVFKGLETVRTDWSPLAQRFQQELYLRIFNRQPYQDY--------VRDYV 675
Query: 904 KK-IRTDLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVA-----LRLNNTNSKKLK 957
++ + +LD+ LL K+L + ++Y R PHV+ A L ++ +
Sbjct: 676 RRTLAGELDD------LLVYRKRLRRRLDDY-QRNVPPHVRAARIADDYNLQRGRPRQYQ 728
Query: 958 QGDTISYIICEDGTSEAATQRAYNIEELKNNSKLKIDVNYYLSQQIHPVVTRLLEPIEGT 1017
G ISY+I G +R+ ID +Y+ +Q+ PV +L P G
Sbjct: 729 SGGWISYVIGVAGPEPLEARRS------------AIDYEHYVGKQLQPVADAIL-PFVGD 775
Query: 1018 DAVRIAE 1024
D + +
Sbjct: 776 DFATLVD 782
>POMBASE|SPAC688.10 [details] [associations]
symbol:rev3 "DNA polymerase zeta catalytic subunit Rev3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003677
"DNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005739 "mitochondrion" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006281 "DNA repair" evidence=ISO] [GO:0016035 "zeta DNA
polymerase complex" evidence=ISO] [GO:0042276 "error-prone
translesion synthesis" evidence=ISO] [GO:0043504 "mitochondrial DNA
repair" evidence=IC] [GO:0043596 "nuclear replication fork"
evidence=IC] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA]
[GO:0070987 "error-free translesion synthesis" evidence=ISO]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISO]
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 PomBase:SPAC688.10
GO:GO:0005829 GO:GO:0005739 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0051539 GO:GO:0043596 SUPFAM:SSF53098 GO:GO:0003887
GO:GO:0070987 GO:GO:0043504 GO:GO:0042276 eggNOG:COG0417
Gene3D:3.90.1600.10 InterPro:IPR023211 InterPro:IPR025687
Pfam:PF14260 KO:K02350 GO:GO:0016035 RefSeq:NP_594068.1 HSSP:P21189
ProteinModelPortal:Q9P6L6 STRING:Q9P6L6 EnsemblFungi:SPAC688.10.1
GeneID:2543358 KEGG:spo:SPAC688.10 HOGENOM:HOG000194392 OMA:RVPYLII
OrthoDB:EOG4FN7RT NextBio:20804373 Uniprot:Q9P6L6
Length = 1480
Score = 212 (79.7 bits), Expect = 3.4e-17, Sum P(4) = 3.4e-17
Identities = 85/338 (25%), Positives = 146/338 (43%)
Query: 682 YLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQY-DIRQKALKLTANSMYG 740
Y+ E+ V +L +++L+E+R VK MK + SD + + + RQ ALKL AN YG
Sbjct: 1015 YVKEN-VRKSLLAKMLEELIETRNMVKRGMK--DCDSDYVNKVLNSRQLALKLIANVTYG 1071
Query: 741 CLGFPNS-RFFAQPLAALVTAKGREILLNTKSLVENLNY---EVIYGDTDSLMISCNVND 796
S R +A + GREIL + + L++ +V+YGDTDSL +
Sbjct: 1072 YTSASFSGRMPCSEIADTIVETGREILSYSLEYINTLDFCHAKVVYGDTDSLFVELPGAT 1131
Query: 797 YDSVFKIGNQIKSECNKLYKQ-LELDIDGVXXXXXXXXXXXXXXXXXXXXXNGKMICSQE 855
+ F IG Q+ + + + L + + I E
Sbjct: 1132 KEQAFDIGQQLANNITSRFPSPIRLKFEKIYFPCFLLAKKRYVGFKFESVSQKAPIF--E 1189
Query: 856 IKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFV 915
KG++ VRRD G V Q+L + D L + + + + + +G V
Sbjct: 1190 AKGIETVRRD--------GTPVQQQLLRRCLEILFKTKD-LSTVKKEFQNVCYQIMSGNV 1240
Query: 916 PLTLLEITKQLTKAPEEYTDRK-ALPHVQVALRLNNTNSKKLKQ-GDTISYIICEDGTSE 973
P+ +K++ E+Y + A P +A RL + ++ Q G+ + Y+I
Sbjct: 1241 PVMDFCFSKEVRL--EKYKELSTAPPGAVMARRLMTKDPRREPQYGERVPYLIIAAAPGT 1298
Query: 974 AATQRAYNIEELKNNSKLKIDVNYYLSQQIHPVVTRLL 1011
R+ EE ++S ++D+NYY++ + P + R L
Sbjct: 1299 TLANRSVAPEEFLSSSFSQLDINYYINNSLIPPLDRFL 1336
Score = 117 (46.2 bits), Expect = 3.4e-17, Sum P(4) = 3.4e-17
Identities = 21/44 (47%), Positives = 33/44 (75%)
Query: 630 LVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI--PVRML 671
LV+EPK Y+ ++++DF SLYPSII YN+C++T PV+++
Sbjct: 938 LVMEPKSDLYNNPVVVLDFQSLYPSIIIAYNLCYSTCLGPVKIV 981
Score = 46 (21.3 bits), Expect = 4.1e-10, Sum P(4) = 4.1e-10
Identities = 20/81 (24%), Positives = 36/81 (44%)
Query: 354 PSTSEPQVHSRTADDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVY----LFGKVFVK 409
PS S QV + A ++LPL + ++ D+Y P V L+ + +
Sbjct: 920 PSPSAKQVAEQNALEALPLVMEPKS-------------DLYNNPVVVLDFQSLYPSIIIA 966
Query: 410 ENNSHSSCCVIVQNIDRKIYL 430
N +S+C V+ ++ K+ L
Sbjct: 967 YNLCYSTCLGPVKIVNGKVKL 987
Score = 41 (19.5 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 28 ARSACSSFCVGTQKMEGGRAK 48
A + C S C+G K+ G+ K
Sbjct: 966 AYNLCYSTCLGPVKIVNGKVK 986
Score = 39 (18.8 bits), Expect = 3.4e-17, Sum P(4) = 3.4e-17
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 245 DEIKSNDSVMEVEMNVAEQSKEEPVDDGLWE 275
DE S + + + + E+S EP W+
Sbjct: 256 DETNSFSKLHQSQFGLKEESSHEPRSSQHWK 286
Score = 38 (18.4 bits), Expect = 3.4e-17, Sum P(4) = 3.4e-17
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 314 VDVTNVESVSSAVELSTSPP----PQVVEKKEHKCAEWEAIQ 351
VD++N+ES + E SP +V K + C A++
Sbjct: 616 VDLSNLESKEAVSEEIQSPQRLSRSKVFRKDPYSCVRILALE 657
>UNIPROTKB|P21189 [details] [associations]
symbol:polB "DNA polymerase II" species:83333 "Escherichia
coli K-12" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0019985
"translesion synthesis" evidence=IBA] [GO:0008408 "3'-5'
exonuclease activity" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0005694 "chromosome" evidence=IBA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0045004 "DNA replication proofreading"
evidence=IDA] [GO:0009432 "SOS response" evidence=IEA;IEP]
[GO:0006261 "DNA-dependent DNA replication" evidence=IMP]
[GO:0008296 "3'-5'-exodeoxyribonuclease activity" evidence=IDA]
[GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;IDA;IBA] InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0005694 GO:GO:0000166 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003677
SUPFAM:SSF53098 EMBL:M35371 EMBL:M62646 EMBL:M37727 EMBL:M38283
GO:GO:0009432 GO:GO:0003887 GO:GO:0006297 EMBL:X54847 PIR:S15943
RefSeq:NP_414602.1 RefSeq:YP_488366.1 PDB:1Q8I PDB:3K57 PDB:3K58
PDB:3K59 PDB:3K5L PDB:3K5M PDB:3K5N PDB:3K5O PDB:3MAQ PDBsum:1Q8I
PDBsum:3K57 PDBsum:3K58 PDBsum:3K59 PDBsum:3K5L PDBsum:3K5M
PDBsum:3K5N PDBsum:3K5O PDBsum:3MAQ ProteinModelPortal:P21189
SMR:P21189 IntAct:P21189 PRIDE:P21189
EnsemblBacteria:EBESCT00000004906 EnsemblBacteria:EBESCT00000016904
GeneID:12932627 GeneID:944779 KEGG:ecj:Y75_p0060 KEGG:eco:b0060
PATRIC:32115221 EchoBASE:EB0740 EcoGene:EG10747 eggNOG:COG0417
HOGENOM:HOG000221829 KO:K02336 OMA:VLDGIDW ProtClustDB:PRK05762
BioCyc:EcoCyc:EG10747-MONOMER BioCyc:ECOL316407:JW0059-MONOMER
BioCyc:MetaCyc:EG10747-MONOMER EvolutionaryTrace:P21189
Genevestigator:P21189 GO:GO:0008296 GO:GO:0045004 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 Uniprot:P21189
Length = 783
Score = 258 (95.9 bits), Expect = 3.6e-17, Sum P(2) = 3.6e-17
Identities = 111/421 (26%), Positives = 178/421 (42%)
Query: 625 AYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLP 684
A GG V++ + G YD ++L D+ SLYPSII+ + I PV +++ + + P
Sbjct: 398 ASPGGYVMDSRPGLYDSVLVL-DYKSLYPSIIRTFLID----PVGLVEG-----MAQPDP 447
Query: 685 EHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGF 744
EH + G L + + ++ + + + Q ALK+ N+ YG LG
Sbjct: 448 EHSTE-GFLDAWFSREKHCLPEIVTNIWHGRDEAKRQGNKPLSQ-ALKIIMNAFYGVLGT 505
Query: 745 PNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISCN-VNDYDSVFKI 803
RFF LA+ +T +G +I+ TK+L+E Y+VIYGDTDS + + + KI
Sbjct: 506 TACRFFDPRLASSITMRGHQIMRQTKALIEAQGYDVIYGDTDSTFVWLKGAHSEEEAAKI 565
Query: 804 GNQIKSECNK-----LYKQ-----LELDIDG-----VXXXXXXXXXXXXXXXXXXXXXNG 848
G + N L KQ LEL+ + +
Sbjct: 566 GRALVQHVNAWWAETLQKQRLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGLIQEGD 625
Query: 849 KMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRT 908
K KG++ VR DW+ LA + + + +I + Y +Y + E + K+
Sbjct: 626 KQ--RMVFKGLETVRTDWTPLAQQFQQELYLRIFRNEPYQEY--------VRETIDKLMA 675
Query: 909 -DLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQGDTISYIIC 967
+LD V K+L + EY R PHV+ A + N K+ G + Y
Sbjct: 676 GELDARLV------YRKRLRRPLSEY-QRNVPPHVRAARLADEENQKR---GRPLQYQ-- 723
Query: 968 EDGTSEAATQRAYNIEELKNNSKLKIDVNYYLSQQIHPVVTRLLEPIEGTDAVRIAECLG 1027
GT + N E + + +D +YL++Q+ PV +L IE A + LG
Sbjct: 724 NRGTIKYVWTT--NGPEPLDYQRSPLDYEHYLTRQLQPVAEGILPFIEDNFATLMTGQLG 781
Query: 1028 L 1028
L
Sbjct: 782 L 782
Score = 42 (19.8 bits), Expect = 3.6e-17, Sum P(2) = 3.6e-17
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 519 ENLLLERKIKGPSWLE 534
E L+ER I P W+E
Sbjct: 112 ERYLMERFITSPVWVE 127
>UNIPROTKB|Q9KSP4 [details] [associations]
symbol:VC_1212 "DNA polymerase" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
EMBL:AE003852 GenomeReviews:AE003852_GR SUPFAM:SSF53098
GO:GO:0003887 KO:K02336 OMA:VLDGIDW ProtClustDB:PRK05762
Gene3D:3.90.1600.10 InterPro:IPR023211 HSSP:P21189 PIR:E82227
RefSeq:NP_230857.1 ProteinModelPortal:Q9KSP4 DNASU:2614645
GeneID:2614645 KEGG:vch:VC1212 PATRIC:20081512 Uniprot:Q9KSP4
Length = 787
Score = 236 (88.1 bits), Expect = 8.5e-16, P = 8.5e-16
Identities = 117/424 (27%), Positives = 172/424 (40%)
Query: 625 AYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNI----CFTTIPVRMLQDSDITTLC 680
A GG V++ G YD ++L DF SLYPSII+ + I + + + + +D
Sbjct: 398 ASPGGYVMDSIPGLYDSVLVL-DFKSLYPSIIRSFLIDPLGLIEGLKLPIGKQADHAVPG 456
Query: 681 EYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYG 740
+ LP I+KL +R + K Q S +A+K+ NS YG
Sbjct: 457 FRGGQFHRTKHFLPEMIEKLWAARDEAKR--NQEKAFS----------QAIKIIMNSFYG 504
Query: 741 CLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVN-DYDS 799
LG RFF LA+ +T +G EI++ TK L+E Y+VIYGDTDS ++
Sbjct: 505 VLGSSGCRFFDARLASSITMRGHEIMIQTKRLIEARGYQVIYGDTDSTFVALGGQYSQQE 564
Query: 800 VFKIGNQIKSECNKLY----KQ-------LELDIDGVXXXXXXXXXXXXXXXXXXXXXNG 848
IG+ + E N+ + KQ LEL+ +
Sbjct: 565 ADNIGHALVREINQWWTEHLKQEYALTSILELEYETHYRRFLMPTIRGSETGSKKRYAGL 624
Query: 849 KMICSQE---IKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKK 905
K E KG++ R DW+ LA + I Q Y ++ I E +
Sbjct: 625 KGDGDNEQLIFKGLESARTDWTPLAQRFQHQLYQLIFHGQDPESY-----IRTIVE--QT 677
Query: 906 IRTDLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQGDTISYI 965
+ LD+ V K+L + EY + P V+ A ++ N+K G + Y
Sbjct: 678 LAGQLDDQLV------YQKRLRRRLHEY-QKNVPPQVRAARMADDINAKL---GRPLQYQ 727
Query: 966 ICEDGTSEAATQRAYNIEELKNNSKLKIDVNYYLSQQIHPVVTRLLEPIEGTDAVR-IAE 1024
GT E N E K SK ID +Y+ +Q+ PV +L P G IA
Sbjct: 728 Y--RGTIEYVI--TVNGPEPKEYSKSPIDYQHYIDKQLKPVADAIL-PFIGKQFDELIAP 782
Query: 1025 CLGL 1028
LGL
Sbjct: 783 QLGL 786
>TIGR_CMR|VC_1212 [details] [associations]
symbol:VC_1212 "DNA polymerase II" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 EMBL:AE003852 GenomeReviews:AE003852_GR
SUPFAM:SSF53098 GO:GO:0003887 KO:K02336 OMA:VLDGIDW
ProtClustDB:PRK05762 Gene3D:3.90.1600.10 InterPro:IPR023211
HSSP:P21189 PIR:E82227 RefSeq:NP_230857.1 ProteinModelPortal:Q9KSP4
DNASU:2614645 GeneID:2614645 KEGG:vch:VC1212 PATRIC:20081512
Uniprot:Q9KSP4
Length = 787
Score = 236 (88.1 bits), Expect = 8.5e-16, P = 8.5e-16
Identities = 117/424 (27%), Positives = 172/424 (40%)
Query: 625 AYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNI----CFTTIPVRMLQDSDITTLC 680
A GG V++ G YD ++L DF SLYPSII+ + I + + + + +D
Sbjct: 398 ASPGGYVMDSIPGLYDSVLVL-DFKSLYPSIIRSFLIDPLGLIEGLKLPIGKQADHAVPG 456
Query: 681 EYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYG 740
+ LP I+KL +R + K Q S +A+K+ NS YG
Sbjct: 457 FRGGQFHRTKHFLPEMIEKLWAARDEAKR--NQEKAFS----------QAIKIIMNSFYG 504
Query: 741 CLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVN-DYDS 799
LG RFF LA+ +T +G EI++ TK L+E Y+VIYGDTDS ++
Sbjct: 505 VLGSSGCRFFDARLASSITMRGHEIMIQTKRLIEARGYQVIYGDTDSTFVALGGQYSQQE 564
Query: 800 VFKIGNQIKSECNKLY----KQ-------LELDIDGVXXXXXXXXXXXXXXXXXXXXXNG 848
IG+ + E N+ + KQ LEL+ +
Sbjct: 565 ADNIGHALVREINQWWTEHLKQEYALTSILELEYETHYRRFLMPTIRGSETGSKKRYAGL 624
Query: 849 KMICSQE---IKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKK 905
K E KG++ R DW+ LA + I Q Y ++ I E +
Sbjct: 625 KGDGDNEQLIFKGLESARTDWTPLAQRFQHQLYQLIFHGQDPESY-----IRTIVE--QT 677
Query: 906 IRTDLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQGDTISYI 965
+ LD+ V K+L + EY + P V+ A ++ N+K G + Y
Sbjct: 678 LAGQLDDQLV------YQKRLRRRLHEY-QKNVPPQVRAARMADDINAKL---GRPLQYQ 727
Query: 966 ICEDGTSEAATQRAYNIEELKNNSKLKIDVNYYLSQQIHPVVTRLLEPIEGTDAVR-IAE 1024
GT E N E K SK ID +Y+ +Q+ PV +L P G IA
Sbjct: 728 Y--RGTIEYVI--TVNGPEPKEYSKSPIDYQHYIDKQLKPVADAIL-PFIGKQFDELIAP 782
Query: 1025 CLGL 1028
LGL
Sbjct: 783 QLGL 786
>UNIPROTKB|Q75F27 [details] [associations]
symbol:AGOS_AAL099C "DNA polymerase" species:284811 "Ashbya
gossypii ATCC 10895" [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IBA] [GO:0005634 "nucleus" evidence=IBA]
[GO:0005694 "chromosome" evidence=IBA] [GO:0016035 "zeta DNA
polymerase complex" evidence=IBA] [GO:0019985 "translesion
synthesis" evidence=IBA] [GO:0006297 "nucleotide-excision repair,
DNA gap filling" evidence=IBA] [GO:0008408 "3'-5' exonuclease
activity" evidence=IBA] InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0005634 GO:GO:0005694 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098 EMBL:AE016814
GenomeReviews:AE016814_GR GO:GO:0003887 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 InterPro:IPR025687
Pfam:PF14260 KO:K02350 GO:GO:0016035 HOGENOM:HOG000194392
OrthoDB:EOG4FN7RT RefSeq:NP_982443.2 STRING:Q75F27
EnsemblFungi:AAS50267 GeneID:4618518 KEGG:ago:AGOS_AAL099C
Uniprot:Q75F27
Length = 1464
Score = 182 (69.1 bits), Expect = 2.0e-15, Sum P(3) = 2.0e-15
Identities = 82/341 (24%), Positives = 138/341 (40%)
Query: 685 EHQVDTGILPSEIKKLVESRRQVK-ALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLG 743
+ + IL + ++++R +K + N S LL D RQ ALKL AN YG
Sbjct: 997 KQNIRKSILAKMLSDILDTRVLLKRTISDMHNGSKRLLSTLDNRQLALKLLANVTYGYAS 1056
Query: 744 FPNS-RFFAQPLAALVTAKGREILLNTKSLVENLNY---EVIYGDTDSLMISCNVNDYDS 799
S R +A + GRE L ++E + V+YGDTDSL + +
Sbjct: 1057 ASYSGRMPCSDIADSIVHTGRETLRAAIQMIEKEDKWGARVVYGDTDSLFVHLPGKSREQ 1116
Query: 800 VFKIGNQIKSECNKLYKQ-LELDIDGVXXXXXXXXXXXXXXXXXXXXXNGKMICSQEIKG 858
FKIG I ++L + V + + + KG
Sbjct: 1117 AFKIGAAISDAVTAANPNPIKLKFEKVYHPCILLSKKRYVGHAYEHAS--QEVPRYDAKG 1174
Query: 859 VDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLT 918
++ VRRD A + +I + L E + L I KI T G VP+
Sbjct: 1175 IETVRRD----GHPAQRKIIQRSL-EILFRTKDLSQLKAYIVNQFWKIMT----GSVPIG 1225
Query: 919 LLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQ-GDTISYIICEDGTSEAATQ 977
+K++ + ++ A P QVA R+ +S Q + +SY++ +
Sbjct: 1226 DFCFSKEVRLGFYK-SEAAAPPAAQVARRMMENDSMAEPQYRERVSYVVAKSRPGTLLAD 1284
Query: 978 RAYNIEELKNNSKLKIDVNYYLSQQIHPVVTRLLEPIEGTD 1018
R ++ + +L++D YY+++ + P + RLL+ + G D
Sbjct: 1285 RCIAPQDFLADPRLELDAEYYITKTLIPPLNRLLQTV-GLD 1324
Score = 120 (47.3 bits), Expect = 2.0e-15, Sum P(3) = 2.0e-15
Identities = 37/122 (30%), Positives = 56/122 (45%)
Query: 545 ISWCKYEVQCNQMEKIRITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYXX 604
I++C V+CN IR+ N+ V+SRT+ R +F + + + V
Sbjct: 837 INYCLERVRCN----IRLLNL-KQVISRTVEQARLIGIDFYSVLSRGSQYRVESVLARLA 891
Query: 605 XXXXXXXXXXXXXXXXRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFT 664
++A L+LEP FY ++++DF SLYPSII YN C+T
Sbjct: 892 KAEHLMLISPGKGDLRHQRALECVPLILEPDPTFYTSPVLVLDFQSLYPSIIIAYNYCYT 951
Query: 665 TI 666
TI
Sbjct: 952 TI 953
Score = 41 (19.5 bits), Expect = 2.0e-15, Sum P(3) = 2.0e-15
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 153 DIQKLLANMP-VKKKKKEEVQLNNDDVLADLLSEVN 187
DI++LL + P +K+ K + L DD + ++ + N
Sbjct: 438 DIERLLYSTPKLKRVKAQHGLLMRDDRVMNINPQSN 473
Score = 37 (18.1 bits), Expect = 5.0e-15, Sum P(3) = 5.0e-15
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 392 DIYKQPGTVYLFGKVFVKENNS 413
D Y Q V+ F K F++ +N+
Sbjct: 247 DEYHQSDAVHTFLKRFLRPDNT 268
>FB|FBgn0002891 [details] [associations]
symbol:mus205 "mutagen-sensitive 205" species:7227
"Drosophila melanogaster" [GO:0016035 "zeta DNA polymerase complex"
evidence=ISS;IBA;NAS] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=ISS;IDA;NAS] [GO:0006260 "DNA replication"
evidence=IEA;NAS] [GO:0019985 "translesion synthesis"
evidence=IBA;NAS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0008408 "3'-5'
exonuclease activity" evidence=IDA] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IMP]
[GO:0005634 "nucleus" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0005694 "chromosome" evidence=IBA] InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 EMBL:AE013599 GO:GO:0005634
GO:GO:0005694 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
GO:GO:0000724 SUPFAM:SSF53098 GO:GO:0003887 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 InterPro:IPR025687
Pfam:PF14260 KO:K02350 GO:GO:0016035 GeneTree:ENSGT00550000074640
FlyBase:FBgn0002891 EMBL:AF298216 RefSeq:NP_524881.2
UniGene:Dm.10622 SMR:Q9GSR1 MINT:MINT-864058 STRING:Q9GSR1
EnsemblMetazoa:FBtr0088831 GeneID:47186 KEGG:dme:Dmel_CG1925
UCSC:CG1925-RA CTD:47186 InParanoid:Q9GSR1 OMA:IPPLNRC
GenomeRNAi:47186 NextBio:838931 Uniprot:Q9GSR1
Length = 2130
Score = 193 (73.0 bits), Expect = 2.1e-14, Sum P(3) = 2.1e-14
Identities = 85/355 (23%), Positives = 156/355 (43%)
Query: 668 VRMLQDSDITTL--CEYL-PEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQY 724
++ L + D+ T+ C + + +V GILP + +++++R+ VK MK SS L
Sbjct: 1652 LQKLLEHDLVTVSPCGVVFVKREVREGILPRMLTEILDTRQMVKQSMKLHKDSSALQRIL 1711
Query: 725 DIRQKALKLTANSMYG--CLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYE--- 779
RQ LKL AN YG F + R + + V +KGRE L LVEN N E
Sbjct: 1712 HSRQLGLKLMANVTYGYTAANF-SGRMPSVEVGDSVVSKGRETLERAIKLVEN-NEEWKV 1769
Query: 780 -VIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVXXXXXXXXXXXX 837
V+YGDTDS+ + + F+IG +I ++ Q ++L ++ V
Sbjct: 1770 RVVYGDTDSMFVLVPGRNRAEAFRIGEEIAKAVTEMNPQPVKLKLEKVYQPCMLQTKKRY 1829
Query: 838 XXXXXXXXXNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQ 897
+ + E KG++ VRRD G ++++L++ + D +
Sbjct: 1830 VGYMYETADQEQPV--YEAKGIETVRRD--------GCPAVAKMLEKVLRILFETQD-VS 1878
Query: 898 NIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKL- 956
I ++ + T L +G L L K+ + Y +P +++ + + + +
Sbjct: 1879 KIKAYVCRQFTKLLSGRANLQDLIFAKEF-RGLNGYKPTACVPALELTRKWMQKDPRHVP 1937
Query: 957 KQGDTISYIICEDGTSEAATQRAYNIEELKNNSKLKIDVNYYLSQQIHPVVTRLL 1011
++G+ + +II + + ++ N KI+ YY+++ I P + R L
Sbjct: 1938 RRGERVPFIIVNGPPGMQLIRLVRSPHDILANEGHKINAIYYITKAIIPPLNRCL 1992
Score = 107 (42.7 bits), Expect = 2.1e-14, Sum P(3) = 2.1e-14
Identities = 19/36 (52%), Positives = 27/36 (75%)
Query: 630 LVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 665
L++EP+ FY +I++DF SLYPS+I YN CF+T
Sbjct: 1589 LIMEPQSRFYADPLIVLDFQSLYPSMIIAYNYCFST 1624
Score = 38 (18.4 bits), Expect = 2.1e-14, Sum P(3) = 2.1e-14
Identities = 10/40 (25%), Positives = 21/40 (52%)
Query: 452 FDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRY 491
+D++ + + +D + +K Y N P D+S+ EV +
Sbjct: 1010 YDEVVSGSRKMDIPEYEFQKPYYSN-PS--DVSKVTEVGF 1046
>UNIPROTKB|I3L6U8 [details] [associations]
symbol:LOC100737059 "DNA polymerase" species:9823 "Sus
scrofa" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR025687 Pfam:PF14260 KO:K02350
GeneTree:ENSGT00550000074640 EMBL:FP102400 RefSeq:XP_003480350.1
Ensembl:ENSSSCT00000026193 GeneID:100737059 KEGG:ssc:100737059
OMA:KATISQY Uniprot:I3L6U8
Length = 721
Score = 158 (60.7 bits), Expect = 3.8e-14, Sum P(3) = 3.8e-14
Identities = 74/338 (21%), Positives = 135/338 (39%)
Query: 688 VDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYG--CLGFP 745
V G+LP +++++++R VK MK L + RQ LKL AN +G F
Sbjct: 274 VRKGVLPRMLEEILKTRLMVKQSMKAYKQDRALSRMLEARQLGLKLIANVTFGYTAANF- 332
Query: 746 NSRFFAQPLAALVTAKGREILLNTKSLVENLNY---EVIYGDTDSLMISCNVNDYDSVFK 802
+ R + + K RE L LV + V+YGDTDS+ + + FK
Sbjct: 333 SGRMPCIEVGDSIVHKARETLERAIKLVNDTKKWGARVVYGDTDSMFVLLKGATKEQSFK 392
Query: 803 IGNQIKSECNKLY-KQLELDIDGVXXXXXXXXXXXXXXXXXXXXXNGKMICSQEIKGVDV 861
IG +I K ++L + V + + KG++
Sbjct: 393 IGQEIAEAVTATNPKPVKLKFEKVYLPCVLQTKKRYVGYMYETLDQKDPVF--DAKGIET 450
Query: 862 VRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLE 921
VRRD + A +S+IL+ + D + I +++++ L G +
Sbjct: 451 VRRD----SCPA----VSKILERSLKLLFETRD-ISLIKQYVQRQCLKLLEGKASIQDFI 501
Query: 922 ITKQLTKAPEEYTDRKALPHVQVALR-LNNTNSKKLKQGDTISYIICEDGTSEAATQRAY 980
K+ + Y +P +++ + L + + + G+ + Y+I Q
Sbjct: 502 FAKEY-RGSASYKPGACVPALELTRKMLTHDRRSEPRVGERVPYVIIYGTPGVPLIQLVR 560
Query: 981 NIEELKNNSKLKIDVNYYLSQQIHPVVTRLLEPIEGTD 1018
E+ + L+++ YY+++QI P + R+ I G D
Sbjct: 561 RPVEVMQDPTLRLNATYYITKQILPPLARIFSLI-GID 597
Score = 113 (44.8 bits), Expect = 3.8e-14, Sum P(3) = 3.8e-14
Identities = 18/36 (50%), Positives = 27/36 (75%)
Query: 630 LVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 665
L++EP+ FY ++++DF SLYPSI+ YN CF+T
Sbjct: 190 LIMEPESRFYSNSVLVLDFQSLYPSIVIAYNYCFST 225
Score = 49 (22.3 bits), Expect = 3.8e-14, Sum P(3) = 3.8e-14
Identities = 14/54 (25%), Positives = 26/54 (48%)
Query: 153 DIQKLLANMPVKKKKKEEVQLNNDDVLADLLSEVNTTIAPTLKL-NTKTNEIVI 205
D+ ++++ +P K + DD +D +SE+N TL L NE+ +
Sbjct: 17 DLCQMISRVP-DDKIENRFAAERDDYGSDTMSEINIVGRITLNLWRIMRNEVAL 69
>WB|WBGene00021344 [details] [associations]
symbol:Y37B11A.2 species:6239 "Caenorhabditis elegans"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0005634
GO:GO:0005694 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
SUPFAM:SSF53098 GO:GO:0003887 eggNOG:COG0417 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 KO:K02350 GO:GO:0016035
GeneTree:ENSGT00550000074640 EMBL:FO080137 RefSeq:NP_498248.2
ProteinModelPortal:Q9BKQ3 SMR:Q9BKQ3 EnsemblMetazoa:Y37B11A.2
GeneID:175809 KEGG:cel:CELE_Y37B11A.2 UCSC:Y37B11A.2 CTD:175809
WormBase:Y37B11A.2 InParanoid:Q9BKQ3 OMA:QERCMSE NextBio:889762
Uniprot:Q9BKQ3
Length = 1133
Score = 177 (67.4 bits), Expect = 4.5e-14, Sum P(3) = 4.5e-14
Identities = 81/333 (24%), Positives = 142/333 (42%)
Query: 691 GILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFP-NSRF 749
G++P +++++ +R VK+ MK+ + L D RQ ALKL AN YG + R
Sbjct: 717 GVMPLLLREILAARIMVKSAMKRTK-NKKLKRILDARQLALKLVANVSYGYTAANWSGRM 775
Query: 750 FAQPLAALVTAKGREILLNTKSLVENLNY---EVIYGDTDSLMISCNVNDYDSVFKIGNQ 806
LA + KGRE L + +V+ +Y EVIYGDTDS+ + + F+IG +
Sbjct: 776 PCAELADAILGKGRETLERSIEMVQRGDYGGAEVIYGDTDSMFVLVRGASVEEAFEIGRR 835
Query: 807 IKSEC-NKLYKQLELDIDGVXXXXXXXXXXXXXXXXXXXXXNGKMICSQEIKGVDVVRRD 865
I + N + L ++ V + S + KG++ VRRD
Sbjct: 836 IVDDVTNSNPDPVVLKLEKVYKGCVLETKKRYAGWMYEHENDEG---SLDAKGIETVRRD 892
Query: 866 WSQLASEAGKFVISQILDE--QSYTDYSLDDRLQNI-HEHMKKIRTDLD-NGFVPLTLLE 921
+ +E + + I + +++ Y L+ + N+ E+ K + G +
Sbjct: 893 TCPIVAEVLEKSLGLIFSQNWKTFITY-LNTVVLNLPQENFSKFVFCKEYRGDYSARAMV 951
Query: 922 ITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQGDTISYIICEDGTSEAATQRAYN 981
K++ +A RK H+ LR G+ + Y+I + T +
Sbjct: 952 PQKKIAEA----RIRKCPSHI--TLR-----------GERVPYVIIDGVTGSTVYSCVRS 994
Query: 982 IEELKNNSKLKIDVNYYLSQQIHPVVTRLLEPI 1014
I++ N + KI+ YYL+ I + R+ + I
Sbjct: 995 IDQFARNPEYKINTFYYLNAHILAALRRVTDLI 1027
Score = 102 (41.0 bits), Expect = 4.5e-14, Sum P(3) = 4.5e-14
Identities = 18/37 (48%), Positives = 27/37 (72%)
Query: 630 LVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI 666
L+LEP+ Y +I++DF SLYPS++ YN C++TI
Sbjct: 621 LILEPQSKVYFDPVIVLDFQSLYPSMVIAYNYCYSTI 657
Score = 47 (21.6 bits), Expect = 4.5e-14, Sum P(3) = 4.5e-14
Identities = 34/122 (27%), Positives = 47/122 (38%)
Query: 251 DSVMEVEMNVAEQSKEEPVDDGLWEQMQID-DWDNSQQ-TQDVLPEQAKVXXXXXXXXXX 308
D M+V+ V + EE D G E ++I D D+ Q Q + + A
Sbjct: 225 DEAMDVDEEVEDD--EELNDKGTGEVIEISSDGDDDQDIVQWITTKSAYDQNFISMNEFL 282
Query: 309 XXXXKVDVTNVESVSSAVEL-STSPPPQVVEKKEH-KCAEWEAI--QT---EPSTSEPQV 361
K++ N S + S VV EH + E + QT EPSTSE V
Sbjct: 283 FDAKKIE--NQRQFSREMTACSVMTDETVVAAAEHSQPVEQTRLLSQTSIGEPSTSEKSV 340
Query: 362 HS 363
S
Sbjct: 341 ES 342
Score = 38 (18.4 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 158 LANMPVKKKKKEEV 171
LA+M VKK K+E V
Sbjct: 705 LASMFVKKSKREGV 718
>UNIPROTKB|Q9BKQ3 [details] [associations]
symbol:Y37B11A.2 "DNA polymerase" species:6239
"Caenorhabditis elegans" [GO:0019985 "translesion synthesis"
evidence=IBA] [GO:0016035 "zeta DNA polymerase complex"
evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0005694 "chromosome" evidence=IBA]
[GO:0005634 "nucleus" evidence=IBA] [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IBA] InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0005634 GO:GO:0005694
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098
GO:GO:0003887 eggNOG:COG0417 GO:GO:0019985 Gene3D:3.90.1600.10
InterPro:IPR023211 KO:K02350 GO:GO:0016035
GeneTree:ENSGT00550000074640 EMBL:FO080137 RefSeq:NP_498248.2
ProteinModelPortal:Q9BKQ3 SMR:Q9BKQ3 EnsemblMetazoa:Y37B11A.2
GeneID:175809 KEGG:cel:CELE_Y37B11A.2 UCSC:Y37B11A.2 CTD:175809
WormBase:Y37B11A.2 InParanoid:Q9BKQ3 OMA:QERCMSE NextBio:889762
Uniprot:Q9BKQ3
Length = 1133
Score = 177 (67.4 bits), Expect = 4.5e-14, Sum P(3) = 4.5e-14
Identities = 81/333 (24%), Positives = 142/333 (42%)
Query: 691 GILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFP-NSRF 749
G++P +++++ +R VK+ MK+ + L D RQ ALKL AN YG + R
Sbjct: 717 GVMPLLLREILAARIMVKSAMKRTK-NKKLKRILDARQLALKLVANVSYGYTAANWSGRM 775
Query: 750 FAQPLAALVTAKGREILLNTKSLVENLNY---EVIYGDTDSLMISCNVNDYDSVFKIGNQ 806
LA + KGRE L + +V+ +Y EVIYGDTDS+ + + F+IG +
Sbjct: 776 PCAELADAILGKGRETLERSIEMVQRGDYGGAEVIYGDTDSMFVLVRGASVEEAFEIGRR 835
Query: 807 IKSEC-NKLYKQLELDIDGVXXXXXXXXXXXXXXXXXXXXXNGKMICSQEIKGVDVVRRD 865
I + N + L ++ V + S + KG++ VRRD
Sbjct: 836 IVDDVTNSNPDPVVLKLEKVYKGCVLETKKRYAGWMYEHENDEG---SLDAKGIETVRRD 892
Query: 866 WSQLASEAGKFVISQILDE--QSYTDYSLDDRLQNI-HEHMKKIRTDLD-NGFVPLTLLE 921
+ +E + + I + +++ Y L+ + N+ E+ K + G +
Sbjct: 893 TCPIVAEVLEKSLGLIFSQNWKTFITY-LNTVVLNLPQENFSKFVFCKEYRGDYSARAMV 951
Query: 922 ITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQGDTISYIICEDGTSEAATQRAYN 981
K++ +A RK H+ LR G+ + Y+I + T +
Sbjct: 952 PQKKIAEA----RIRKCPSHI--TLR-----------GERVPYVIIDGVTGSTVYSCVRS 994
Query: 982 IEELKNNSKLKIDVNYYLSQQIHPVVTRLLEPI 1014
I++ N + KI+ YYL+ I + R+ + I
Sbjct: 995 IDQFARNPEYKINTFYYLNAHILAALRRVTDLI 1027
Score = 102 (41.0 bits), Expect = 4.5e-14, Sum P(3) = 4.5e-14
Identities = 18/37 (48%), Positives = 27/37 (72%)
Query: 630 LVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI 666
L+LEP+ Y +I++DF SLYPS++ YN C++TI
Sbjct: 621 LILEPQSKVYFDPVIVLDFQSLYPSMVIAYNYCYSTI 657
Score = 47 (21.6 bits), Expect = 4.5e-14, Sum P(3) = 4.5e-14
Identities = 34/122 (27%), Positives = 47/122 (38%)
Query: 251 DSVMEVEMNVAEQSKEEPVDDGLWEQMQID-DWDNSQQ-TQDVLPEQAKVXXXXXXXXXX 308
D M+V+ V + EE D G E ++I D D+ Q Q + + A
Sbjct: 225 DEAMDVDEEVEDD--EELNDKGTGEVIEISSDGDDDQDIVQWITTKSAYDQNFISMNEFL 282
Query: 309 XXXXKVDVTNVESVSSAVEL-STSPPPQVVEKKEH-KCAEWEAI--QT---EPSTSEPQV 361
K++ N S + S VV EH + E + QT EPSTSE V
Sbjct: 283 FDAKKIE--NQRQFSREMTACSVMTDETVVAAAEHSQPVEQTRLLSQTSIGEPSTSEKSV 340
Query: 362 HS 363
S
Sbjct: 341 ES 342
Score = 38 (18.4 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 158 LANMPVKKKKKEEV 171
LA+M VKK K+E V
Sbjct: 705 LASMFVKKSKREGV 718
>ZFIN|ZDB-GENE-050302-55 [details] [associations]
symbol:rev3l "REV3-like, catalytic subunit of DNA
polymerase zeta (yeast)" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0006139 "nucleobase-containing compound
metabolic process" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0016740 "transferase
activity" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 ZFIN:ZDB-GENE-050302-55 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR025687 Pfam:PF14260
GeneTree:ENSGT00550000074640 EMBL:CABZ01061477 EMBL:CABZ01061476
EMBL:CU570797 IPI:IPI00996886 Ensembl:ENSDART00000092264
ArrayExpress:E7FDC5 Bgee:E7FDC5 Uniprot:E7FDC5
Length = 2953
Score = 172 (65.6 bits), Expect = 8.5e-14, Sum P(3) = 8.5e-14
Identities = 74/337 (21%), Positives = 136/337 (40%)
Query: 688 VDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNS 747
V G+LP +++++++R VK MK L D RQ LKL AN +G S
Sbjct: 2500 VRRGVLPRMLEEILKTRIMVKQSMKAYRNDKALSRLLDARQLGLKLIANVTFGYTSANFS 2559
Query: 748 -RFFAQPLAALVTAKGREILLNTKSLVENLNY---EVIYGDTDSLMISCNVNDYDSVFKI 803
R + + K RE L +V + V+YGDTDS+ + + FKI
Sbjct: 2560 GRMPCVEVGDSIVHKARETLERAIKMVNDTKKWGARVVYGDTDSMFVLLKGATKEQAFKI 2619
Query: 804 GNQIKSECNKLY-KQLELDIDGVXXXXXXXXXXXXXXXXXXXXXNGKMICSQEIKGVDVV 862
GN+I K ++L + V + + KG++ V
Sbjct: 2620 GNEIAEAVTATNPKPIKLKFEKVYLPCILQTKKRYVGYMYESVDQENPVF--DAKGIETV 2677
Query: 863 RRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEI 922
RRD G +S+IL+ + D + + +++++ + G + L
Sbjct: 2678 RRD--------GCPGVSKILERSLKLLFESRD-ISQVKQYVQRQCVKVVEGKASMQDLTF 2728
Query: 923 TKQLTKAPEEYTDRKALPHVQVALRLNNTNSK-KLKQGDTISYIICEDGTSEAATQRAYN 981
K+ + Y +P +++ R+ + + + + G+ + Y+I Q
Sbjct: 2729 AKEY-RGSGSYRPGACVPALELTRRMMAFDRRLEPRVGERVPYVIVYGSPGVPLIQLVRR 2787
Query: 982 IEELKNNSKLKIDVNYYLSQQIHPVVTRLLEPIEGTD 1018
E+ + L+++ YY+++QI P + R+ I G D
Sbjct: 2788 PLEVLQDPSLRLNATYYITKQILPPLARIFNLI-GVD 2823
Score = 117 (46.2 bits), Expect = 8.5e-14, Sum P(3) = 8.5e-14
Identities = 21/45 (46%), Positives = 32/45 (71%)
Query: 621 RKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 665
+++AA LV+EP+ FY +I++DF SLYPSI+ YN C++T
Sbjct: 2407 QQRAAQCIPLVMEPESRFYSNSVIVLDFQSLYPSIVIAYNYCYST 2451
Score = 48 (22.0 bits), Expect = 8.5e-14, Sum P(3) = 8.5e-14
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 157 LLANMPVKKKKKEEVQLNNDDVLADLLSEV--NTTIAPTLK 195
+L + K++ KEE + N D L + +S NT +A K
Sbjct: 1419 VLKELLQKRQLKEEQEANKSDGLTEAVSSTSQNTDVAKRAK 1459
Score = 43 (20.2 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 12/51 (23%), Positives = 25/51 (49%)
Query: 660 NICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKAL 710
N C +T L+D TLC E+ + + ++ E++++ +V A+
Sbjct: 204 NACASTFNETGLRD----TLCTRWEENNIPSSLILEEVERVSVCELEVDAV 250
>UNIPROTKB|Q8X1U8 [details] [associations]
symbol:UPR1 "DNA polymerase" species:5141 "Neurospora
crassa" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0005694
"chromosome" evidence=IBA] [GO:0016035 "zeta DNA polymerase
complex" evidence=IBA] [GO:0019985 "translesion synthesis"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0005634 GO:GO:0005694 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098 GO:GO:0003887
GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211
InterPro:IPR025687 Pfam:PF14260 GO:GO:0016035 HOGENOM:HOG000194392
OrthoDB:EOG4FN7RT EMBL:AB077040 ProteinModelPortal:Q8X1U8
STRING:Q8X1U8 Uniprot:Q8X1U8
Length = 1926
Score = 176 (67.0 bits), Expect = 3.5e-13, Sum P(3) = 3.5e-13
Identities = 77/337 (22%), Positives = 136/337 (40%)
Query: 682 YLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGC 741
Y H + +L + +++E+R VK+ MKQ + + RQ ALKL AN YG
Sbjct: 1299 YTKPH-IRKSLLAKMLTEILETRIMVKSGMKQDKDDRAIQQLLNNRQLALKLLANVTYGY 1357
Query: 742 LGFPNS-RFFAQPLAALVTAKGREILLNTKSLVENL---NYEVIYGDTDSLMISCNVNDY 797
S R +A + GRE L + + ++ + +V+YGDTDSL +S
Sbjct: 1358 TSASFSGRMPCSEIADSIVQTGRETLERAIAFIHSVQKWDADVVYGDTDSLFVSLKGRTR 1417
Query: 798 DSVFKIGNQIKSECNKLY-KQLELDIDGVXXXXXXXXXXXXXXXXXXXXXNGKMICSQEI 856
+ F+IG +I KL + ++L + V + + +
Sbjct: 1418 EQAFEIGQEIADAVTKLNPRPVKLKFEKVYHPCVLLAKKRYVGYKYES--RDQTVPVFDA 1475
Query: 857 KGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVP 916
KG++ VRRD + + + +IL E + L E KI G V
Sbjct: 1476 KGIETVRRDGTPAEQRIEEKAL-KILFETA----DLSQVKSYFQEQCHKIM----RGAVS 1526
Query: 917 LTLLEITKQLTKAPEEYTDR--KALPHVQVALRLNNTNSKKLKQ-GDTISYIICEDGTSE 973
+ +++ + R A +A + +++ Q G+ + Y++
Sbjct: 1527 VQDFCFAREVKLGTYSTSGRGGPAPAGALIATKKMKEDARAEPQYGERVPYVVMAGAPGM 1586
Query: 974 AATQRAYNIEELKNNSKLKIDVNYYLSQQIHPVVTRL 1010
R EEL NN+ +D +YY+++ I P + R+
Sbjct: 1587 RLVDRCVEPEELLNNAHATLDADYYINKNIIPPLERI 1623
Score = 108 (43.1 bits), Expect = 3.5e-13, Sum P(3) = 3.5e-13
Identities = 18/42 (42%), Positives = 30/42 (71%)
Query: 630 LVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRML 671
LV+EP+ FY ++++DF SLYPS++ YN C++T R++
Sbjct: 1222 LVMEPQSAFYSSPLLVLDFQSLYPSVMIAYNYCYSTFLGRIV 1263
Score = 42 (19.8 bits), Expect = 1.6e-06, Sum P(3) = 1.6e-06
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 354 PSTSEPQVHSRTADDSLPLATDHENKKVFRMFFLDAFEDIY 394
PS S QV ++ A + LPL + ++ + F+ +Y
Sbjct: 1204 PSPSRKQVGAQNALECLPLVMEPQSAFYSSPLLVLDFQSLY 1244
Score = 41 (19.5 bits), Expect = 3.5e-13, Sum P(3) = 3.5e-13
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 69 GQ-GVKHKYEFTADENVYEEVSEKEYTE 95
GQ G + K + E VYEE +++ + E
Sbjct: 540 GQPGPQRKLQSNPPERVYEEPNKRVHEE 567
>UNIPROTKB|Q233J3 [details] [associations]
symbol:TTHERM_00391570 "DNA polymerase" species:312017
"Tetrahymena thermophila SB210" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IBA] [GO:0005634 "nucleus"
evidence=IBA] [GO:0005694 "chromosome" evidence=IBA] [GO:0016035
"zeta DNA polymerase complex" evidence=IBA] [GO:0019985
"translesion synthesis" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IBA]
InterPro:IPR001440 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR011990 InterPro:IPR012337
InterPro:IPR013026 InterPro:IPR017964 InterPro:IPR019734
Pfam:PF00136 Pfam:PF00515 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 PROSITE:PS50005 PROSITE:PS50293 SMART:SM00028
SMART:SM00486 GO:GO:0005634 GO:GO:0005694 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 Gene3D:1.25.40.10 InterPro:IPR006597
SMART:SM00671 SUPFAM:SSF53098 InterPro:IPR013105 Pfam:PF07719
GO:GO:0003887 GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211
InterPro:IPR025687 Pfam:PF14260 KO:K02350 GO:GO:0016035
EMBL:GG662770 RefSeq:XP_001011832.1 ProteinModelPortal:Q233J3
EnsemblProtists:EAR91587 GeneID:7847176 KEGG:tet:TTHERM_00391570
ProtClustDB:CLSZ2498360 Uniprot:Q233J3
Length = 2315
Score = 188 (71.2 bits), Expect = 3.9e-13, Sum P(4) = 3.9e-13
Identities = 88/390 (22%), Positives = 167/390 (42%)
Query: 635 KKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILP 694
+KG + K + ++ + +++++N +++D + + V G+L
Sbjct: 1247 QKGGFKKLGVQKQWDVQFEELLKKHNYDID----ELMKDIFVAPNKVAFVKKSVREGVLS 1302
Query: 695 SEIKKLVESRRQVKALM---KQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNS-RFF 750
+ +R+ +K M KQ L + + + RQK+LKL ++G G S R
Sbjct: 1303 QITHEFFFTRQFIKGNMGKYKQNPLYNHIYNKLQQRQKSLKLFMCVIFGYTGATFSGRMP 1362
Query: 751 AQPLAALVTAKGREILLNTKSLVENLNY---EVIYGDTDSLMISCNVNDYDSVFKIGNQI 807
LA + G+ +L +L+ N +VIYGDTDS+ ++ + KIG +I
Sbjct: 1363 LGDLADSIIQIGKFLLNQAINLINNSKKWGAQVIYGDTDSVFVNIKGVSVNDAIKIGKEI 1422
Query: 808 KSECNKLYKQ-LELDIDGVXXXXXXXXXXXXXXXXXXXXXNGKMICSQEIKGVDVVRRDW 866
+SE +K++ L+L + + E KG++V+R+D
Sbjct: 1423 ESEVSKMFPYPLKLKYEKTYQNLVILTKKRYAGFFVENETDEPKF---EAKGLEVMRKDG 1479
Query: 867 SQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQL 926
Q S K + +L ++ + L ++ +K+ L++ F L+ I+K+
Sbjct: 1480 CQALSIIMKNCLETLLKNKNLSAIKL-----YLNGEWQKL---LNDQFSYRDLI-ISKEC 1530
Query: 927 TKAPEEYTDRKALPHVQVALR-LNNTNSKKLKQGDTISYIICEDGTSEAATQRAYNIEEL 985
E YT PH ++AL+ + K K G I Y I + S+ ++ E
Sbjct: 1531 KL--ENYT--MPPPHARIALKEMKRDPQTKPKYGQRIKYFIINNPQSQRLYDCVVSVNEF 1586
Query: 986 KNNSKLKIDVNYYLSQQIHPVVTRLLEPIE 1015
N + +I++N YL +QI+ + RL +
Sbjct: 1587 MKNYRHQINLNEYLEKQINSALGRLFSTFD 1616
Score = 107 (42.7 bits), Expect = 3.9e-13, Sum P(4) = 3.9e-13
Identities = 21/36 (58%), Positives = 27/36 (75%)
Query: 630 LVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 665
L LEP K FY +I++DF SLYPSI+ YN+CF+T
Sbjct: 1202 LTLEPPKLFYVDPVIVLDFISLYPSIMIAYNLCFST 1237
Score = 42 (19.8 bits), Expect = 3.9e-13, Sum P(4) = 3.9e-13
Identities = 25/113 (22%), Positives = 50/113 (44%)
Query: 429 YLLPRSEHLKTKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLE 488
YL + + TK+ + I Q + E Q + +L +K K +FN +S+ +E
Sbjct: 659 YLCRCNLNESTKQDIQIVQQFFEKPQNQAKRFVLKYKP----KCPSFNQIMATGISKQVE 714
Query: 489 VRYSAKCPALPSDLSGDTFSHVFGTKSSFLENLLLERKIKGPSWLEFPEAEKF 541
+Y A +L D F H + K+ ++ L +I ++ P+ +++
Sbjct: 715 HQY-----AYYENLE-DLFEH-YNLKNKSVQRNLYFAQILEKDIIKTPQHKQY 760
Score = 38 (18.4 bits), Expect = 3.9e-13, Sum P(4) = 3.9e-13
Identities = 19/66 (28%), Positives = 28/66 (42%)
Query: 377 ENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEH 436
+N K F F+D E+ Y T+Y V K+ S I+ N + IY +
Sbjct: 118 QNDKTFLDKFIDLIEECYY---TLY---SVSEKQKKFLMSTTPIILNYEI-IYKKDIYGY 170
Query: 437 LKTKEP 442
T+EP
Sbjct: 171 HSTEEP 176
>UNIPROTKB|F1P7E8 [details] [associations]
symbol:REV3L "DNA polymerase" species:9615 "Canis lupus
familiaris" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR025687 Pfam:PF14260
GeneTree:ENSGT00550000074640 EMBL:AAEX03008609 EMBL:AAEX03008610
Ensembl:ENSCAFT00000006343 Uniprot:F1P7E8
Length = 3058
Score = 159 (61.0 bits), Expect = 2.1e-12, Sum P(3) = 2.1e-12
Identities = 75/338 (22%), Positives = 134/338 (39%)
Query: 688 VDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYG--CLGFP 745
V G+LP +++++++R VK MK L D RQ LKL AN +G F
Sbjct: 2609 VRKGVLPRMLEEILKTRLMVKQSMKAYKQDRALSRMLDARQLGLKLIANVTFGYTAANF- 2667
Query: 746 NSRFFAQPLAALVTAKGREILLNTKSLVENLNY---EVIYGDTDSLMISCNVNDYDSVFK 802
+ R + + K RE L LV + V+YGDTDS+ + + FK
Sbjct: 2668 SGRMPCIEVGDSIVHKARETLERAIKLVNDTKKWGARVVYGDTDSMFVLLKGATKEQSFK 2727
Query: 803 IGNQIKSECNKLY-KQLELDIDGVXXXXXXXXXXXXXXXXXXXXXNGKMICSQEIKGVDV 861
IG +I K ++L + V + + KG++
Sbjct: 2728 IGQEIAEAVTATNPKPVKLKFEKVYLPCVLQTKKRYVGYMYETLDQKDPVF--DAKGIET 2785
Query: 862 VRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLE 921
VRRD + A +S+IL+ + D + I +++++ L G +
Sbjct: 2786 VRRD----SCPA----VSKILERSLKLLFETRD-ISLIKQYVQRQCMKLLEGKASIQDFI 2836
Query: 922 ITKQLTKAPEEYTDRKALPHVQVALR-LNNTNSKKLKQGDTISYIICEDGTSEAATQRAY 980
K+ + Y +P +++ + L + + G+ + Y+I Q
Sbjct: 2837 FAKEY-RGSSSYKPGACVPALELTRKMLTYDRRSEPRVGERVPYVIIYGTPGVPLIQLVR 2895
Query: 981 NIEELKNNSKLKIDVNYYLSQQIHPVVTRLLEPIEGTD 1018
E+ + L+++ YY+++QI P + R+ I G D
Sbjct: 2896 RPVEVLQDPTLRLNATYYITKQILPPLARIFSLI-GID 2932
Score = 113 (44.8 bits), Expect = 2.1e-12, Sum P(3) = 2.1e-12
Identities = 18/36 (50%), Positives = 27/36 (75%)
Query: 630 LVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 665
L++EP+ FY ++++DF SLYPSI+ YN CF+T
Sbjct: 2525 LIMEPESRFYSNSVLVLDFQSLYPSIVIAYNYCFST 2560
Score = 52 (23.4 bits), Expect = 2.1e-12, Sum P(3) = 2.1e-12
Identities = 18/60 (30%), Positives = 34/60 (56%)
Query: 144 NIQNPNAKGDIQKLLANMPVKKKKKEEVQLNNDDVLADLLS---EVNTTIAPTLKLNTKT 200
N+ P+A G+ Q LA + +K+++ + N +++ D LS + N I+ +L+ N KT
Sbjct: 1437 NVSTPSAFGEGQSGLAVLKELLQKRQQ-KAQNANIMQDPLSNKHQPNKNISGSLEQN-KT 1494
Score = 40 (19.1 bits), Expect = 3.5e-11, Sum P(3) = 3.5e-11
Identities = 9/32 (28%), Positives = 20/32 (62%)
Query: 25 STRARSACSSFCVGTQKMEGGRAKRQKIDKTN 56
+TR+ S SFCV Q+ E ++ ++++++
Sbjct: 1676 TTRSNSIMDSFCV--QQAEDCLNEKSRLNRSS 1705
Score = 40 (19.1 bits), Expect = 3.5e-11, Sum P(3) = 3.5e-11
Identities = 12/43 (27%), Positives = 24/43 (55%)
Query: 157 LLANMPVKKKKKEEVQLNNDDVLADLLSEVNTTIAPTLKLNTK 199
LLAN+ + + + N+D+ L + S ++++ T KL+ K
Sbjct: 437 LLANLSIPQLDGTADE-NSDNPLNNENSRTHSSVIATSKLSVK 478
Score = 37 (18.1 bits), Expect = 7.1e-11, Sum P(3) = 7.1e-11
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 354 PSTSEPQVHSRTADDSLPLATDHENKKVFRMFFL 387
PS++ V + +P HE +K F +L
Sbjct: 16 PSSTAQHVFKVSLVSGMPFYGYHEKEKHFMKIYL 49
>UNIPROTKB|F1P7D5 [details] [associations]
symbol:REV3L "DNA polymerase" species:9615 "Canis lupus
familiaris" [GO:0016035 "zeta DNA polymerase complex" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 SUPFAM:SSF53098 GO:GO:0003887
Gene3D:3.90.1600.10 InterPro:IPR023211 InterPro:IPR025687
Pfam:PF14260 CTD:5980 KO:K02350 OMA:DGTADEN GO:GO:0016035
GeneTree:ENSGT00550000074640 EMBL:AAEX03008609 EMBL:AAEX03008610
RefSeq:XP_539084.3 Ensembl:ENSCAFT00000006350 GeneID:481963
KEGG:cfa:481963 Uniprot:F1P7D5
Length = 3136
Score = 159 (61.0 bits), Expect = 2.3e-12, Sum P(3) = 2.3e-12
Identities = 75/338 (22%), Positives = 134/338 (39%)
Query: 688 VDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYG--CLGFP 745
V G+LP +++++++R VK MK L D RQ LKL AN +G F
Sbjct: 2687 VRKGVLPRMLEEILKTRLMVKQSMKAYKQDRALSRMLDARQLGLKLIANVTFGYTAANF- 2745
Query: 746 NSRFFAQPLAALVTAKGREILLNTKSLVENLNY---EVIYGDTDSLMISCNVNDYDSVFK 802
+ R + + K RE L LV + V+YGDTDS+ + + FK
Sbjct: 2746 SGRMPCIEVGDSIVHKARETLERAIKLVNDTKKWGARVVYGDTDSMFVLLKGATKEQSFK 2805
Query: 803 IGNQIKSECNKLY-KQLELDIDGVXXXXXXXXXXXXXXXXXXXXXNGKMICSQEIKGVDV 861
IG +I K ++L + V + + KG++
Sbjct: 2806 IGQEIAEAVTATNPKPVKLKFEKVYLPCVLQTKKRYVGYMYETLDQKDPVF--DAKGIET 2863
Query: 862 VRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLE 921
VRRD + A +S+IL+ + D + I +++++ L G +
Sbjct: 2864 VRRD----SCPA----VSKILERSLKLLFETRD-ISLIKQYVQRQCMKLLEGKASIQDFI 2914
Query: 922 ITKQLTKAPEEYTDRKALPHVQVALR-LNNTNSKKLKQGDTISYIICEDGTSEAATQRAY 980
K+ + Y +P +++ + L + + G+ + Y+I Q
Sbjct: 2915 FAKEY-RGSSSYKPGACVPALELTRKMLTYDRRSEPRVGERVPYVIIYGTPGVPLIQLVR 2973
Query: 981 NIEELKNNSKLKIDVNYYLSQQIHPVVTRLLEPIEGTD 1018
E+ + L+++ YY+++QI P + R+ I G D
Sbjct: 2974 RPVEVLQDPTLRLNATYYITKQILPPLARIFSLI-GID 3010
Score = 113 (44.8 bits), Expect = 2.3e-12, Sum P(3) = 2.3e-12
Identities = 18/36 (50%), Positives = 27/36 (75%)
Query: 630 LVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 665
L++EP+ FY ++++DF SLYPSI+ YN CF+T
Sbjct: 2603 LIMEPESRFYSNSVLVLDFQSLYPSIVIAYNYCFST 2638
Score = 52 (23.4 bits), Expect = 2.3e-12, Sum P(3) = 2.3e-12
Identities = 18/60 (30%), Positives = 34/60 (56%)
Query: 144 NIQNPNAKGDIQKLLANMPVKKKKKEEVQLNNDDVLADLLS---EVNTTIAPTLKLNTKT 200
N+ P+A G+ Q LA + +K+++ + N +++ D LS + N I+ +L+ N KT
Sbjct: 1515 NVSTPSAFGEGQSGLAVLKELLQKRQQ-KAQNANIMQDPLSNKHQPNKNISGSLEQN-KT 1572
Score = 40 (19.1 bits), Expect = 3.8e-11, Sum P(3) = 3.8e-11
Identities = 9/32 (28%), Positives = 20/32 (62%)
Query: 25 STRARSACSSFCVGTQKMEGGRAKRQKIDKTN 56
+TR+ S SFCV Q+ E ++ ++++++
Sbjct: 1754 TTRSNSIMDSFCV--QQAEDCLNEKSRLNRSS 1783
Score = 40 (19.1 bits), Expect = 3.8e-11, Sum P(3) = 3.8e-11
Identities = 12/43 (27%), Positives = 24/43 (55%)
Query: 157 LLANMPVKKKKKEEVQLNNDDVLADLLSEVNTTIAPTLKLNTK 199
LLAN+ + + + N+D+ L + S ++++ T KL+ K
Sbjct: 515 LLANLSIPQLDGTADE-NSDNPLNNENSRTHSSVIATSKLSVK 556
Score = 37 (18.1 bits), Expect = 7.7e-11, Sum P(3) = 7.7e-11
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 354 PSTSEPQVHSRTADDSLPLATDHENKKVFRMFFL 387
PS++ V + +P HE +K F +L
Sbjct: 94 PSSTAQHVFKVSLVSGMPFYGYHEKEKHFMKIYL 127
>UNIPROTKB|G4NL37 [details] [associations]
symbol:MGG_02986 "DNA polymerase" species:242507
"Magnaporthe oryzae 70-15" [GO:0009405 "pathogenesis" evidence=IMP]
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0009405
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098
EMBL:CM001237 GO:GO:0003887 Gene3D:3.90.1600.10 InterPro:IPR023211
InterPro:IPR025687 Pfam:PF14260 KO:K02350 RefSeq:XP_003720713.1
EnsemblFungi:MGG_02986T0 GeneID:2682539 KEGG:mgr:MGG_02986
Uniprot:G4NL37
Length = 1782
Score = 168 (64.2 bits), Expect = 2.4e-12, Sum P(3) = 2.4e-12
Identities = 73/336 (21%), Positives = 141/336 (41%)
Query: 687 QVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPN 746
++ +L + +++E+R VK+ MKQ L + RQ ALKL AN YG
Sbjct: 1241 EIRKSLLAKMLTEILETRVMVKSGMKQDKDDKTLQQLLNNRQLALKLLANVTYGYTSASF 1300
Query: 747 S-RFFAQPLAALVTAKGREILLNTKSLVENL---NYEVIYGDTDSLMISCNVNDYDSVFK 802
S R +A + GRE L + + ++ EV+YGDTDSL I + F+
Sbjct: 1301 SGRLPCSEIADSIVQTGRETLERAIAFIHSVPRWGAEVVYGDTDSLFIHLKGRTKEQAFE 1360
Query: 803 IGNQIKSECNKLY-KQLELDIDGVXXXXXXXXXXXXXXXXXXXXXNGKMICSQEIKGVDV 861
IGN++ + + ++L + V + + + KG++
Sbjct: 1361 IGNEMAKAITDMNPRPMKLKFEKVYLPCVLLAKKRYVGYKYEHVD--QQVPDFDAKGIET 1418
Query: 862 VRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLE 921
VRRD + + + + ++L E + D L I E+ ++ + G V +
Sbjct: 1419 VRRDGTPAEQKIEEKAL-RLLFETA-------D-LSQIKEYFQRQCNKIMRGQVSIQDFC 1469
Query: 922 ITKQLTKAPEEYTDRKAL----PHVQVALRLNNTNSKKLKQ-GDTISYIICEDGTSEAAT 976
K++ Y+DR + P ++ + + + Q G+ + Y++
Sbjct: 1470 FAKEVKLGT--YSDRNGVGPAPPGALISTKKMLADPRAEPQYGERVLYVVVTGAPGARLA 1527
Query: 977 QRAYNIEELKN--NSKLKIDVNYYLSQQIHPVVTRL 1010
R E++ + + L++D +YY+S+ + P + R+
Sbjct: 1528 DRCVPPEDMLSPAGAHLRLDADYYISKNLIPPLERI 1563
Score = 110 (43.8 bits), Expect = 2.4e-12, Sum P(3) = 2.4e-12
Identities = 18/42 (42%), Positives = 31/42 (73%)
Query: 630 LVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRML 671
LV+EP+ FY+ ++++DF SLYPS++ YN C++T R++
Sbjct: 1160 LVMEPQSAFYNSPVLVLDFQSLYPSVMIAYNYCYSTFLGRIV 1201
Score = 38 (18.4 bits), Expect = 2.4e-12, Sum P(3) = 2.4e-12
Identities = 10/39 (25%), Positives = 18/39 (46%)
Query: 40 QKMEGGRAKRQKIDKTNKFAAFQKLKDLKGQGVKHKYEF 78
+K G R K + A ++L ++G K+K+ F
Sbjct: 810 KKESGSRPKSHPASPQSTQLARRQLSQIEGATPKNKHGF 848
>UNIPROTKB|E1BPY8 [details] [associations]
symbol:REV3L "DNA polymerase" species:9913 "Bos taurus"
[GO:0016035 "zeta DNA polymerase complex" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR025687 Pfam:PF14260 GO:GO:0016035
GeneTree:ENSGT00550000074640 EMBL:DAAA02025892 EMBL:DAAA02025893
EMBL:DAAA02025894 EMBL:DAAA02025895 IPI:IPI00923965
Ensembl:ENSBTAT00000060948 Uniprot:E1BPY8
Length = 3133
Score = 161 (61.7 bits), Expect = 2.9e-12, Sum P(3) = 2.9e-12
Identities = 76/338 (22%), Positives = 134/338 (39%)
Query: 688 VDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYG--CLGFP 745
V G+LP +++++++R VK MK L D RQ LKL AN +G F
Sbjct: 2684 VRKGVLPRMLEEILKTRLMVKRSMKAYKQDRVLSRMLDARQLGLKLIANVTFGYTAANF- 2742
Query: 746 NSRFFAQPLAALVTAKGREILLNTKSLVENLNY---EVIYGDTDSLMISCNVNDYDSVFK 802
+ R + + K RE L LV + V+YGDTDSL + + FK
Sbjct: 2743 SGRMPCIEVGDSIVHKARETLERAIKLVNDTKKWGARVVYGDTDSLFVLLKGATKEQSFK 2802
Query: 803 IGNQIKSECNKLY-KQLELDIDGVXXXXXXXXXXXXXXXXXXXXXNGKMICSQEIKGVDV 861
IG +I K ++L + V + + KG++
Sbjct: 2803 IGQEIAEAVTATNPKPVKLKFEKVYLPCVLQTKKRYVGYMYETLDQKDPVF--DAKGIET 2860
Query: 862 VRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLE 921
VRRD + A +S+IL+ + D + I +++++ L G +
Sbjct: 2861 VRRD----SCPA----VSKILERSLKLLFETRD-ISLIKQYVQRQCMKLLEGKASIQDFI 2911
Query: 922 ITKQLTKAPEEYTDRKALPHVQVALR-LNNTNSKKLKQGDTISYIICEDGTSEAATQRAY 980
K+ + Y +P +++ + L + + G+ + Y+I Q
Sbjct: 2912 FAKEY-RGSASYKPGACVPALELTRKMLTYDRRSEPRVGERVPYVIIYGAPGVPLIQLVR 2970
Query: 981 NIEELKNNSKLKIDVNYYLSQQIHPVVTRLLEPIEGTD 1018
E+ + L+++ YY+++QI P + R+ I G D
Sbjct: 2971 RPVEVLQDPTLRLNATYYITKQILPPLARIFSLI-GID 3007
Score = 113 (44.8 bits), Expect = 2.9e-12, Sum P(3) = 2.9e-12
Identities = 18/36 (50%), Positives = 27/36 (75%)
Query: 630 LVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 665
L++EP+ FY ++++DF SLYPSI+ YN CF+T
Sbjct: 2600 LIMEPESRFYSNSVLVLDFQSLYPSIVIAYNYCFST 2635
Score = 49 (22.3 bits), Expect = 2.9e-12, Sum P(3) = 2.9e-12
Identities = 13/54 (24%), Positives = 27/54 (50%)
Query: 153 DIQKLLANMPVKKKKKEEVQLNNDDVLADLLSEVNTTIAPTLKL-NTKTNEIVI 205
D+ ++++ +P K + D+ +D++SE+N TL L NE+ +
Sbjct: 2427 DLCQMISRVP-DDKTENRFAAERDEYGSDVMSEINIVGRITLNLWRIMRNEVAL 2479
Score = 44 (20.5 bits), Expect = 9.3e-12, Sum P(3) = 9.3e-12
Identities = 16/57 (28%), Positives = 31/57 (54%)
Query: 144 NIQNPNAKGDIQKLLANMPVKKKKKEEVQLNNDDVLADLLS---EVNTTIAPTLKLN 197
N+ P+A G+ Q LA + +K+++ + N + + D LS + N I+ +L+ N
Sbjct: 1517 NMSTPSAFGEGQSGLAVLKELLQKRQQ-KAQNGNSIQDPLSNKQQPNKNISVSLEHN 1572
Score = 40 (19.1 bits), Expect = 2.4e-11, Sum P(3) = 2.4e-11
Identities = 12/43 (27%), Positives = 24/43 (55%)
Query: 157 LLANMPVKKKKKEEVQLNNDDVLADLLSEVNTTIAPTLKLNTK 199
LLAN+ + + + N+D+ L + S ++++ T KL+ K
Sbjct: 516 LLANLSIPQLDGTADE-NSDNPLNNENSRTHSSVIATSKLSVK 557
>UNIPROTKB|F1NQT0 [details] [associations]
symbol:REV3L "DNA polymerase" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0016035 "zeta DNA
polymerase complex" evidence=IEA] InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR025687 Pfam:PF14260 OMA:DGTADEN
GeneTree:ENSGT00550000074640 EMBL:AADN02002055 EMBL:AADN02002056
IPI:IPI00582758 Ensembl:ENSGALT00000024245 Uniprot:F1NQT0
Length = 3100
Score = 154 (59.3 bits), Expect = 4.2e-12, Sum P(4) = 4.2e-12
Identities = 74/338 (21%), Positives = 131/338 (38%)
Query: 688 VDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYG--CLGFP 745
V G+LP +++++++R VK MK + + RQ LK AN YG F
Sbjct: 2651 VRKGVLPRMLEEILKTRIMVKQSMKAYKHDKAITRMLEARQLGLKYIANFTYGYTAANF- 2709
Query: 746 NSRFFAQPLAALVTAKGREILLNTKSLVENLNY---EVIYGDTDSLMISCNVNDYDSVFK 802
+ R L + K RE L LV + V+YGDTDS+ + + FK
Sbjct: 2710 SGRMPCIELGDSIVHKARETLERAIKLVNDTKKWGAHVVYGDTDSMFVLLKGATKEQSFK 2769
Query: 803 IGNQIKSECNKLY-KQLELDIDGVXXXXXXXXXXXXXXXXXXXXXNGKMICSQEIKGVDV 861
IG +I K ++L + V + + KG++
Sbjct: 2770 IGQEIAEAVTATNPKPVKLKFEKVYLPCVLQTKKRYVGYMYETLDQKDPVF--DAKGIET 2827
Query: 862 VRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLE 921
VRRD S+ + I + + + + + +QN + MK + G +
Sbjct: 2828 VRRDSCPAVSKILECSIKLLFETRDISQ--IKQYVQN--QCMKLLE-----GKASIQDFI 2878
Query: 922 ITKQLTKAPEEYTDRKALPHVQVALR-LNNTNSKKLKQGDTISYIICEDGTSEAATQRAY 980
K+ + Y +P +++ R L + + G+ + Y+I Q
Sbjct: 2879 FAKEY-RGSSAYKPGSCVPALEITRRMLAYDRRSEPRVGERVPYVIVYGMPGLPLIQLVR 2937
Query: 981 NIEELKNNSKLKIDVNYYLSQQIHPVVTRLLEPIEGTD 1018
E+ + L+++ YY+++QI P + R+ I G D
Sbjct: 2938 RPTEVLQDPSLRLNATYYITKQILPPLARVFSLI-GID 2974
Score = 118 (46.6 bits), Expect = 4.2e-12, Sum P(4) = 4.2e-12
Identities = 36/116 (31%), Positives = 60/116 (51%)
Query: 623 KAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI--PVRMLQDSDITTL- 679
KA L++EP+ FY ++++DF SLYPSI+ YN CF+T PV L D
Sbjct: 2560 KAPQCVPLIMEPESRFYSNAVLVLDFQSLYPSIVIAYNYCFSTCLGPVENLGKYDAFKFG 2619
Query: 680 CEYL---PE--HQV--DTGILPSEIKKLVES-RRQVKALMKQPNLSSDLLMQYDIR 727
C L P+ +Q+ D + PS + + S R+ V M + L + ++++ ++
Sbjct: 2620 CTSLRVPPDLLYQIRHDITVSPSGVAFVKPSVRKGVLPRMLEEILKTRIMVKQSMK 2675
Score = 59 (25.8 bits), Expect = 4.2e-12, Sum P(4) = 4.2e-12
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 173 LNNDDVLADLLSEVNTTIAPTLKLNTKTNE 202
LNN+D++ DL S+ NT P L +++ T E
Sbjct: 543 LNNEDLVEDL-SQPNTETRPELSVHSLTKE 571
Score = 40 (19.1 bits), Expect = 4.2e-12, Sum P(4) = 4.2e-12
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 257 EMNVAEQSKEEPVDDGLWEQMQIDDWDNSQQTQDVLPEQAK 297
+++ A +S + D L + DN+QQ +PE +K
Sbjct: 1357 KLSEARESSDSTKMDQLHSTSYLHCKDNNQQQIFCIPEASK 1397
Score = 40 (19.1 bits), Expect = 3.2e-10, Sum P(4) = 3.2e-10
Identities = 11/45 (24%), Positives = 24/45 (53%)
Query: 157 LLANMPVKKKKKEEVQLNNDDVLADLLSEVNTTIAPTLKLNTKTN 201
LL N+ + + + N D+ L + S ++++ T K++ KT+
Sbjct: 468 LLTNLSIPQLDGTADE-NGDNPLNNESSRTHSSVIATSKMSVKTS 511
>UNIPROTKB|K7GRB5 [details] [associations]
symbol:LOC100627036 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0001882 "nucleoside binding" evidence=IEA] InterPro:IPR015088
Pfam:PF08996 GeneTree:ENSGT00550000074891 EMBL:CU207412
EMBL:FP339588 Ensembl:ENSSSCT00000033790 Uniprot:K7GRB5
Length = 119
Score = 176 (67.0 bits), Expect = 4.5e-12, P = 4.5e-12
Identities = 43/112 (38%), Positives = 54/112 (48%)
Query: 1132 GWLKCEDPGCSDLTRRCPLGLKTR--LCTTCHKYKLHRVYTELQLYQQLSFFHYICDITK 1189
GWL CE+P C + TR PL LC C K L Y++ LY QL F+ YI D+
Sbjct: 1 GWLICEEPTCRNRTRHLPLQFSRNGPLCQVCMKATLRPEYSDKSLYTQLCFYRYIFDVDS 60
Query: 1190 ALTKSDTPSIK-------FDSETYMGYCKMKQHVERFLESSAYNIVDLKKLF 1234
AL K T K + Y K+K E+FL S Y+ V+L KLF
Sbjct: 61 ALEKLITDHEKDKLKKHFLTPKVLQDYRKLKSTAEQFLSQSGYSEVNLSKLF 112
>ASPGD|ASPL0000070569 [details] [associations]
symbol:uvsI species:162425 "Emericella nidulans"
[GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;ISA] [GO:0006281 "DNA repair" evidence=IMP]
[GO:0042276 "error-prone translesion synthesis" evidence=ISA;IMP]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0016035 "zeta DNA polymerase complex"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0070987 "error-free
translesion synthesis" evidence=IEA] InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 SUPFAM:SSF53098 EMBL:BN001303 GO:GO:0003887
EMBL:AACD01000081 Gene3D:3.90.1600.10 InterPro:IPR023211
InterPro:IPR025687 Pfam:PF14260 KO:K02350 HOGENOM:HOG000194392
RefSeq:XP_662393.1 ProteinModelPortal:G5EB69
EnsemblFungi:CADANIAT00005633 GeneID:2872590 KEGG:ani:AN4789.2
OMA:INIWRAM Uniprot:G5EB69
Length = 1681
Score = 150 (57.9 bits), Expect = 1.4e-11, Sum P(3) = 1.4e-11
Identities = 74/332 (22%), Positives = 127/332 (38%)
Query: 687 QVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPN 746
+V +L + +++E+R VK MK L + RQ ALKL AN YG
Sbjct: 1212 EVRKSLLAKMLTEILETRVMVKTGMKVDKDDRALQRLLNNRQLALKLIANVTYGYTSASF 1271
Query: 747 S-RFFAQPLAALVTAKGREILLNTKSL---VENLNYEVIYGDTDSLMISCNVNDYDSVFK 802
S R +A + GRE L + VE EV+YGDTDSL + D F
Sbjct: 1272 SGRMPCSEIADSIVQSGRETLEKAIAFIHSVERWGAEVVYGDTDSLFVYLKGRTRDQAFD 1331
Query: 803 IGNQIKSECNKLYKQ-LELDIDGVXXXXXXXXXXXXXXXXXXXXXNGKMICSQEIKGVDV 861
IG +I + ++L + V N K + KG++
Sbjct: 1332 IGEEIAQAVTNMNPHPVKLKFEKVYHPCVLLAKKRYVGFKYEHR-NQKEP-EFDAKGIET 1389
Query: 862 VRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLE 921
VRRD + Q ++E++ L + + + T + G V +
Sbjct: 1390 VRRDGTPA---------EQKIEEKALKLLFRTADLSQVKSYFQSQCTKIMQGRVSVQDFC 1440
Query: 922 ITKQLTKAPEEYTDRKALPH---VQVALRLNNTNSKKLKQGDTISYIICEDGTSEAATQR 978
+ + Y++ LP + L + ++ + G+ + Y++ R
Sbjct: 1441 FARAVKLGT--YSENGTLPAGALISTKKMLEDPRAEP-QYGERVPYVVVTGAPGSRLIDR 1497
Query: 979 AYNIEELKNNSKLKIDVNYYLSQQIHPVVTRL 1010
E L +++L +D YY+++ I P + R+
Sbjct: 1498 CVPPETLLQDAQLDLDAEYYITKNIIPPLERI 1529
Score = 108 (43.1 bits), Expect = 1.4e-11, Sum P(3) = 1.4e-11
Identities = 19/36 (52%), Positives = 27/36 (75%)
Query: 630 LVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 665
LV+EP+ FY +I++DF SLYPSI+ YN C++T
Sbjct: 1131 LVMEPQSDFYTSPLIVLDFQSLYPSIMIAYNYCYST 1166
Score = 50 (22.7 bits), Expect = 1.4e-11, Sum P(3) = 1.4e-11
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 251 DSVMEVEMNVAEQSKEEPVDDGLWEQMQIDDWDNSQ 286
D+V E N S +E DG+ + DD+DNS+
Sbjct: 401 DAVRATESNSGLYSSDE---DGMIDIFSDDDYDNSE 433
Score = 39 (18.8 bits), Expect = 1.8e-10, Sum P(3) = 1.8e-10
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 71 GVKHKYEFTADENVYEEVSEKEYTERVLKRQE 102
G + K A E+ EKEY +VL + E
Sbjct: 780 GEQQK-SLAATTKTEEQYEEKEYRGKVLSQIE 810
>UNIPROTKB|O60673 [details] [associations]
symbol:REV3L "DNA polymerase zeta catalytic subunit"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0051539 "4 iron, 4 sulfur
cluster binding" evidence=IEA] [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IBA] [GO:0005634 "nucleus"
evidence=IBA] [GO:0005694 "chromosome" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IBA] [GO:0019985
"translesion synthesis" evidence=IBA] [GO:0016035 "zeta DNA
polymerase complex" evidence=IDA] [GO:0006261 "DNA-dependent DNA
replication" evidence=TAS] InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0005634 GO:GO:0005694 GO:GO:0000166
GO:GO:0046872 GO:GO:0003677 GO:GO:0051539 GO:GO:0006261
SUPFAM:SSF53098 GO:GO:0003887 eggNOG:COG0417 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 InterPro:IPR025687
Pfam:PF14260 EMBL:AF058701 EMBL:AF071798 EMBL:AF157476
EMBL:AF179428 EMBL:AF179429 EMBL:AF078695 EMBL:AY684169
EMBL:AL080317 EMBL:AL136310 EMBL:AL512325 EMBL:AF035537
IPI:IPI00248651 IPI:IPI00745230 RefSeq:NP_002903.3
UniGene:Hs.232021 PDB:3ABD PDB:3ABE PDB:3VU7 PDBsum:3ABD
PDBsum:3ABE PDBsum:3VU7 ProteinModelPortal:O60673 SMR:O60673
IntAct:O60673 STRING:O60673 PhosphoSite:O60673 PaxDb:O60673
PRIDE:O60673 Ensembl:ENST00000358835 Ensembl:ENST00000368802
Ensembl:ENST00000368805 Ensembl:ENST00000435970 GeneID:5980
KEGG:hsa:5980 UCSC:uc003pux.4 CTD:5980 GeneCards:GC06M111665
H-InvDB:HIX0017582 HGNC:HGNC:9968 MIM:602776 neXtProt:NX_O60673
PharmGKB:PA34337 HOGENOM:HOG000112263 HOVERGEN:HBG000426
InParanoid:O60673 KO:K02350 OMA:DGTADEN OrthoDB:EOG4NVZJD
PhylomeDB:O60673 ChiTaRS:REV3L EvolutionaryTrace:O60673
GenomeRNAi:5980 NextBio:23277 ArrayExpress:O60673 Bgee:O60673
CleanEx:HS_REV3L Genevestigator:O60673 GermOnline:ENSG00000009413
GO:GO:0016035 Uniprot:O60673
Length = 3130
Score = 156 (60.0 bits), Expect = 1.5e-11, Sum P(3) = 1.5e-11
Identities = 75/337 (22%), Positives = 134/337 (39%)
Query: 688 VDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNS 747
V G+LP +++++++R VK MK L D RQ LKL AN +G S
Sbjct: 2681 VRKGVLPRMLEEILKTRFMVKQSMKAYKQDRALSRMLDARQLGLKLIANVTFGYTSANFS 2740
Query: 748 -RFFAQPLAALVTAKGREILLNTKSLVENLNY---EVIYGDTDSLMISCNVNDYDSVFKI 803
R + + K RE L LV + V+YGDTDS+ + + FKI
Sbjct: 2741 GRMPCIEVGDSIVHKARETLERAIKLVNDTKKWGARVVYGDTDSMFVLLKGATKEQSFKI 2800
Query: 804 GNQIKSECNKLY-KQLELDIDGVXXXXXXXXXXXXXXXXXXXXXNGKMICSQEIKGVDVV 862
G +I K ++L + V + + KG++ V
Sbjct: 2801 GQEIAEAVTATNPKPVKLKFEKVYLPCVLQTKKRYVGYMYETLDQKDPVF--DAKGIETV 2858
Query: 863 RRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEI 922
RRD + A +S+IL+ + D + I +++++ L G +
Sbjct: 2859 RRD----SCPA----VSKILERSLKLLFETRD-ISLIKQYVQRQCMKLLEGKASIQDFIF 2909
Query: 923 TKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQ-GDTISYIICEDGTSEAATQRAYN 981
K+ + Y +P +++ ++ + + Q G+ + Y+I Q
Sbjct: 2910 AKEY-RGSFSYKPGACVPALELTRKMLTYDRRSEPQVGERVPYVIIYGTPGVPLIQLVRR 2968
Query: 982 IEELKNNSKLKIDVNYYLSQQIHPVVTRLLEPIEGTD 1018
E+ + L+++ YY+++QI P + R+ I G D
Sbjct: 2969 PVEVLQDPTLRLNATYYITKQILPPLARIFSLI-GID 3004
Score = 113 (44.8 bits), Expect = 1.5e-11, Sum P(3) = 1.5e-11
Identities = 18/36 (50%), Positives = 27/36 (75%)
Query: 630 LVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 665
L++EP+ FY ++++DF SLYPSI+ YN CF+T
Sbjct: 2597 LIMEPESRFYSNSVLVLDFQSLYPSIVIAYNYCFST 2632
Score = 47 (21.6 bits), Expect = 1.5e-11, Sum P(3) = 1.5e-11
Identities = 12/47 (25%), Positives = 26/47 (55%)
Query: 10 HRKWRVEELNVKEGKSTRARSACSSFCVGTQKMEGGRAKRQKIDKTN 56
H +W+ N +TR+ S SFCV Q+ E +++ ++++++
Sbjct: 1741 HNQWK----NSFHPLTTRSNSIMDSFCV--QQAEDCLSEKSRLNRSS 1781
Score = 47 (21.6 bits), Expect = 5.4e-11, Sum P(4) = 5.4e-11
Identities = 18/62 (29%), Positives = 33/62 (53%)
Query: 144 NIQNPNAKGDIQKLLANMPVKKKKKEEVQLNNDDVLADLLS---EVNTTIAPTLKLNTKT 200
N+ P+A G+ Q LA + +K+++ + N + D LS + N I+ +L+ N K
Sbjct: 1513 NVSTPSAFGEGQSGLAVLKELLQKRQQ-KAQNANTTQDPLSNKHQPNKNISGSLEHN-KA 1570
Query: 201 NE 202
N+
Sbjct: 1571 NK 1572
Score = 44 (20.5 bits), Expect = 5.4e-11, Sum P(4) = 5.4e-11
Identities = 20/71 (28%), Positives = 36/71 (50%)
Query: 39 TQKM-EGGRAKRQKIDKTNKFAAFQK---LKD--LKGQ-GVKHKYEFTADENVYEEVSEK 91
T K+ + G+ K + KTN+ +K LKD +K Q G + K+ +NV E S
Sbjct: 1197 TNKLVDDGKKKPRAKQKTNEKGTSRKHTTLKDEKIKSQSGAEVKFVLK-HQNVSEFASSS 1255
Query: 92 EYTERVLKRQE 102
++ + K+++
Sbjct: 1256 GGSQLLFKQKD 1266
>UNIPROTKB|P26811 [details] [associations]
symbol:dpo1 "DNA polymerase 1" species:273057 "Sulfolobus
solfataricus P2" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IBA] [GO:0005694 "chromosome" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IBA] [GO:0019985
"translesion synthesis" evidence=IBA] InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0005694 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098 EMBL:AE006641
GenomeReviews:AE006641_GR GO:GO:0008408 GO:GO:0003887 GO:GO:0006297
eggNOG:COG0417 GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211
EMBL:X64466 EMBL:U92875 EMBL:Y18930 PIR:F90201 PIR:S23019
RefSeq:NP_342079.1 PDB:1S5J PDBsum:1S5J ProteinModelPortal:P26811
SMR:P26811 DIP:DIP-48850N GeneID:1454836 KEGG:sso:SSO0552
HOGENOM:HOG000108124 KO:K02319 OMA:HKPYFLT ProtClustDB:PRK05761
EvolutionaryTrace:P26811 Uniprot:P26811
Length = 882
Score = 210 (79.0 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 60/203 (29%), Positives = 100/203 (49%)
Query: 622 KKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDS-DITTLC 680
K Y G +V++P G + +L DF SLYPSII+ +N+ + T+ ++ + ++
Sbjct: 490 KGKGYKGAVVIDPPAGIFFNITVL-DFASLYPSIIRTWNLSYETVDIQQCKKPYEVKDET 548
Query: 681 -EYLPEHQVDTGILPSEIKKLVESRRQ--VKALMKQPNLSSDLLMQYDIRQKALKLTANS 737
E L +D + + I L+ R K K PN S + + YD+ Q+A+K+ N+
Sbjct: 549 GEVLHIVCMDRPGITAVITGLLRDFRVKIYKKKAKNPNNSEEQKLLYDVVQRAMKVFINA 608
Query: 738 MYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSL-MISCNVND 796
YG G +A +A VTA GR ++ +T V+YGDTDSL +++ N
Sbjct: 609 TYGVFGAETFPLYAPAVAESVTALGRYVITSTVKKAREEGLTVLYGDTDSLFLLNPPKNS 668
Query: 797 YDSVFKIGN---QIKSECNKLYK 816
+++ K + E +K YK
Sbjct: 669 LENIIKWVKTTFNLDLEVDKTYK 691
Score = 38 (18.4 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 11/44 (25%), Positives = 25/44 (56%)
Query: 943 QVALRLNNTNS-KKLKQGDTISYIICEDGTSEAATQRAYNIEEL 985
++ + +N+ N K++K+ I ++ G+ E + YN++EL
Sbjct: 736 ELMISINSPNDVKEIKR--KIVDVV--KGSYEKLKNKGYNLDEL 775
>UNIPROTKB|F1LMP6 [details] [associations]
symbol:Rev3l "DNA polymerase" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0016035 "zeta DNA polymerase complex" evidence=IEA]
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 RGD:1307087
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098
GO:GO:0003887 Gene3D:3.90.1600.10 InterPro:IPR023211
InterPro:IPR025687 Pfam:PF14260 IPI:IPI00361212
Ensembl:ENSRNOT00000000725 ArrayExpress:F1LMP6 Uniprot:F1LMP6
Length = 3118
Score = 147 (56.8 bits), Expect = 7.1e-11, Sum P(4) = 7.1e-11
Identities = 74/337 (21%), Positives = 133/337 (39%)
Query: 688 VDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNS 747
V G+LP +++++++R VK MK L + RQ LKL AN +G S
Sbjct: 2669 VRKGVLPRMLEEILKTRFMVKQSMKAYRQDRALSRMLNARQLGLKLIANVTFGYTSANFS 2728
Query: 748 -RFFAQPLAALVTAKGREILLNTKSLVENLNY---EVIYGDTDSLMISCNVNDYDSVFKI 803
R + + K RE L LV + V+YGDTDS+ + + FKI
Sbjct: 2729 GRMPCIEVGDSIVHKARETLERAIKLVNDTKKWGARVVYGDTDSMFVLLKGATKEQSFKI 2788
Query: 804 GNQIKSECNKLY-KQLELDIDGVXXXXXXXXXXXXXXXXXXXXXNGKMICSQEIKGVDVV 862
G +I K ++L + V + + KG++ V
Sbjct: 2789 GQEIAEAVTATNPKPVKLKFEKVYLPCVLQTKKRYVGYMYETLDQKDPVF--DAKGIETV 2846
Query: 863 RRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEI 922
RRD + A +S+IL+ + D + I +++++ L G +
Sbjct: 2847 RRD----SCPA----VSKILERSLKLLFETRD-ISLIKQYVQRQCMKLVEGKASIQDFIF 2897
Query: 923 TKQLTKAPEEYTDRKALPHVQVALR-LNNTNSKKLKQGDTISYIICEDGTSEAATQRAYN 981
K+ + Y +P +++ + L + + G+ + Y+I Q
Sbjct: 2898 AKEY-RGSFSYRPGACVPALELTRKMLAYDRRSEPRVGERVPYVIVYGTPGLPLIQLIRR 2956
Query: 982 IEELKNNSKLKIDVNYYLSQQIHPVVTRLLEPIEGTD 1018
E+ + L+++ YY+++QI P + R+ I G D
Sbjct: 2957 PAEVLQDPTLRLNATYYITKQILPPLARIFSLI-GID 2992
Score = 113 (44.8 bits), Expect = 7.1e-11, Sum P(4) = 7.1e-11
Identities = 18/36 (50%), Positives = 27/36 (75%)
Query: 630 LVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 665
L++EP+ FY ++++DF SLYPSI+ YN CF+T
Sbjct: 2585 LIMEPESRFYSNSVLVLDFQSLYPSIVIAYNYCFST 2620
Score = 52 (23.4 bits), Expect = 7.1e-11, Sum P(4) = 7.1e-11
Identities = 20/100 (20%), Positives = 42/100 (42%)
Query: 484 SEYLEVRYSAKCPALPSDLSGDTFSHVFGTKSSFLENLLLERKIKGPSWLEFPEAEKFPS 543
S +LE R S + P PS GD+ S V+ + + + +R + E
Sbjct: 1296 SSFLESRKSVQFPTFPSS-RGDSRSSVYSSIGPGVSKVNTQRSHSQSAMFTRKETTLIQK 1354
Query: 544 RISWCKYEVQCNQMEKIRITNVCGNVLS-RTLMGGRSERN 582
I +++ + + + T +C ++S +T +++N
Sbjct: 1355 SI----FDLSNHLSQVAQSTQLCSGIISPKTEESSNTQKN 1390
Score = 49 (22.3 bits), Expect = 1.4e-10, Sum P(4) = 1.4e-10
Identities = 14/54 (25%), Positives = 26/54 (48%)
Query: 153 DIQKLLANMPVKKKKKEEVQLNNDDVLADLLSEVNTTIAPTLKL-NTKTNEIVI 205
D+ ++++ +P K + DD +D +SE+N TL L NE+ +
Sbjct: 2412 DLCQMISRVP-DDKIENRFAAERDDYGSDTMSEINIVGRITLNLWRIMRNEVAL 2464
Score = 47 (21.6 bits), Expect = 7.1e-11, Sum P(4) = 7.1e-11
Identities = 20/71 (28%), Positives = 29/71 (40%)
Query: 24 KSTRARSACSSFCVGTQKMEGGRAKRQKIDKTNKFAAFQKLKDLKGQGVKHKYEFTADEN 83
K ++AR A SS V T K Q +D K ++ + +G+ K DE
Sbjct: 1175 KKSKARLAKSS--VVTNKRNKRNQTNQLVDNGKKKPRAKQKQRANEKGISRKPVIPTDET 1232
Query: 84 VYEEVSEKEYT 94
+ SE E T
Sbjct: 1233 T-KPPSEAELT 1242
>UNIPROTKB|F1M8G6 [details] [associations]
symbol:Rev3l "DNA polymerase" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0016035 "zeta DNA polymerase complex" evidence=IEA]
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 RGD:1307087
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR025687 Pfam:PF14260 CTD:5980
KO:K02350 GO:GO:0016035 GeneTree:ENSGT00550000074640
IPI:IPI00778278 RefSeq:NP_001077435.1 UniGene:Rn.8189
Ensembl:ENSRNOT00000057227 GeneID:309812 KEGG:rno:309812
NextBio:661358 ArrayExpress:F1M8G6 Uniprot:F1M8G6
Length = 3132
Score = 147 (56.8 bits), Expect = 7.2e-11, Sum P(4) = 7.2e-11
Identities = 74/337 (21%), Positives = 133/337 (39%)
Query: 688 VDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNS 747
V G+LP +++++++R VK MK L + RQ LKL AN +G S
Sbjct: 2683 VRKGVLPRMLEEILKTRFMVKQSMKAYRQDRALSRMLNARQLGLKLIANVTFGYTSANFS 2742
Query: 748 -RFFAQPLAALVTAKGREILLNTKSLVENLNY---EVIYGDTDSLMISCNVNDYDSVFKI 803
R + + K RE L LV + V+YGDTDS+ + + FKI
Sbjct: 2743 GRMPCIEVGDSIVHKARETLERAIKLVNDTKKWGARVVYGDTDSMFVLLKGATKEQSFKI 2802
Query: 804 GNQIKSECNKLY-KQLELDIDGVXXXXXXXXXXXXXXXXXXXXXNGKMICSQEIKGVDVV 862
G +I K ++L + V + + KG++ V
Sbjct: 2803 GQEIAEAVTATNPKPVKLKFEKVYLPCVLQTKKRYVGYMYETLDQKDPVF--DAKGIETV 2860
Query: 863 RRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEI 922
RRD + A +S+IL+ + D + I +++++ L G +
Sbjct: 2861 RRD----SCPA----VSKILERSLKLLFETRD-ISLIKQYVQRQCMKLVEGKASIQDFIF 2911
Query: 923 TKQLTKAPEEYTDRKALPHVQVALR-LNNTNSKKLKQGDTISYIICEDGTSEAATQRAYN 981
K+ + Y +P +++ + L + + G+ + Y+I Q
Sbjct: 2912 AKEY-RGSFSYRPGACVPALELTRKMLAYDRRSEPRVGERVPYVIVYGTPGLPLIQLIRR 2970
Query: 982 IEELKNNSKLKIDVNYYLSQQIHPVVTRLLEPIEGTD 1018
E+ + L+++ YY+++QI P + R+ I G D
Sbjct: 2971 PAEVLQDPTLRLNATYYITKQILPPLARIFSLI-GID 3006
Score = 113 (44.8 bits), Expect = 7.2e-11, Sum P(4) = 7.2e-11
Identities = 18/36 (50%), Positives = 27/36 (75%)
Query: 630 LVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 665
L++EP+ FY ++++DF SLYPSI+ YN CF+T
Sbjct: 2599 LIMEPESRFYSNSVLVLDFQSLYPSIVIAYNYCFST 2634
Score = 52 (23.4 bits), Expect = 7.2e-11, Sum P(4) = 7.2e-11
Identities = 20/100 (20%), Positives = 42/100 (42%)
Query: 484 SEYLEVRYSAKCPALPSDLSGDTFSHVFGTKSSFLENLLLERKIKGPSWLEFPEAEKFPS 543
S +LE R S + P PS GD+ S V+ + + + +R + E
Sbjct: 1296 SSFLESRKSVQFPTFPSS-RGDSRSSVYSSIGPGVSKVNTQRSHSQSAMFTRKETTLIQK 1354
Query: 544 RISWCKYEVQCNQMEKIRITNVCGNVLS-RTLMGGRSERN 582
I +++ + + + T +C ++S +T +++N
Sbjct: 1355 SI----FDLSNHLSQVAQSTQLCSGIISPKTEESSNTQKN 1390
Score = 49 (22.3 bits), Expect = 1.4e-10, Sum P(4) = 1.4e-10
Identities = 14/54 (25%), Positives = 26/54 (48%)
Query: 153 DIQKLLANMPVKKKKKEEVQLNNDDVLADLLSEVNTTIAPTLKL-NTKTNEIVI 205
D+ ++++ +P K + DD +D +SE+N TL L NE+ +
Sbjct: 2426 DLCQMISRVP-DDKIENRFAAERDDYGSDTMSEINIVGRITLNLWRIMRNEVAL 2478
Score = 47 (21.6 bits), Expect = 7.2e-11, Sum P(4) = 7.2e-11
Identities = 20/71 (28%), Positives = 29/71 (40%)
Query: 24 KSTRARSACSSFCVGTQKMEGGRAKRQKIDKTNKFAAFQKLKDLKGQGVKHKYEFTADEN 83
K ++AR A SS V T K Q +D K ++ + +G+ K DE
Sbjct: 1175 KKSKARLAKSS--VVTNKRNKRNQTNQLVDNGKKKPRAKQKQRANEKGISRKPVIPTDET 1232
Query: 84 VYEEVSEKEYT 94
+ SE E T
Sbjct: 1233 T-KPPSEAELT 1242
>MGI|MGI:1337131 [details] [associations]
symbol:Rev3l "REV3-like, catalytic subunit of DNA polymerase
zeta RAD54 like (S. cerevisiae)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IBA]
[GO:0005634 "nucleus" evidence=IBA] [GO:0005694 "chromosome"
evidence=IBA] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IMP] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0016035 "zeta DNA polymerase
complex" evidence=ISO;IBA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] [GO:0019985 "translesion synthesis" evidence=IBA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0051536
"iron-sulfur cluster binding" evidence=IEA] [GO:0051539 "4 iron, 4
sulfur cluster binding" evidence=IEA] InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 EMBL:AF083464 MGI:MGI:1337131
GO:GO:0005634 GO:GO:0005694 GO:GO:0000166 GO:GO:0046872
GO:GO:0003677 GO:GO:0006260 GO:GO:0051539 SUPFAM:SSF53098
GO:GO:0003887 eggNOG:COG0417 GO:GO:0019985 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR025687 Pfam:PF14260 CTD:5980
HOGENOM:HOG000112263 HOVERGEN:HBG000426 KO:K02350 OMA:DGTADEN
ChiTaRS:REV3L GO:GO:0016035 EMBL:AB031049 EMBL:AC118733
EMBL:AC119943 EMBL:D78644 IPI:IPI00378205 PIR:T17202
RefSeq:NP_035394.2 UniGene:Mm.439723 PDB:4FJO PDBsum:4FJO
ProteinModelPortal:Q61493 SMR:Q61493 STRING:Q61493
PhosphoSite:Q61493 PaxDb:Q61493 PRIDE:Q61493
Ensembl:ENSMUST00000019986 Ensembl:ENSMUST00000164763 GeneID:19714
KEGG:mmu:19714 UCSC:uc007ewc.1 GeneTree:ENSGT00550000074640
InParanoid:Q61493 NextBio:297104 Bgee:Q61493 Genevestigator:Q61493
GermOnline:ENSMUSG00000019841 Uniprot:Q61493
Length = 3122
Score = 149 (57.5 bits), Expect = 2.2e-10, Sum P(4) = 2.2e-10
Identities = 73/338 (21%), Positives = 135/338 (39%)
Query: 688 VDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYG--CLGFP 745
V G+LP +++++++R VK MK L + RQ LKL AN +G F
Sbjct: 2673 VRKGVLPRMLEEILKTRLMVKQSMKSYKQDRALSRMLNARQLGLKLIANVTFGYTAANF- 2731
Query: 746 NSRFFAQPLAALVTAKGREILLNTKSLVENLNY---EVIYGDTDSLMISCNVNDYDSVFK 802
+ R + + K RE L LV + V+YGDTDS+ + + FK
Sbjct: 2732 SGRMPCIEVGDSIVHKARETLERAIKLVNDTKKWGARVVYGDTDSMFVLLKGATKEQSFK 2791
Query: 803 IGNQIKSECNKLY-KQLELDIDGVXXXXXXXXXXXXXXXXXXXXXNGKMICSQEIKGVDV 861
IG +I + ++L + V + + + KG++
Sbjct: 2792 IGQEIAEAVTATNPRPVKLKFEKVYLPCVLQTKKRYVGYMYETLDQKEPVF--DAKGIET 2849
Query: 862 VRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLE 921
VRRD + A +S+IL+ + D + I +++++ L G +
Sbjct: 2850 VRRD----SCPA----VSKILERSLKLLFETRD-ISLIKQYVQRQCMKLVEGKASIQDFI 2900
Query: 922 ITKQLTKAPEEYTDRKALPHVQVALR-LNNTNSKKLKQGDTISYIICEDGTSEAATQRAY 980
K+ + Y +P +++ + L + + G+ + Y+I Q
Sbjct: 2901 FAKEY-RGSFSYRPGACVPALELTRKMLAYDRRSEPRVGERVPYVIIYGTPGLPLIQLIR 2959
Query: 981 NIEELKNNSKLKIDVNYYLSQQIHPVVTRLLEPIEGTD 1018
E+ + L+++ YY+++QI P + R+ I G D
Sbjct: 2960 RPAEVLQDPTLRLNATYYITKQILPPLARIFSLI-GID 2996
Score = 113 (44.8 bits), Expect = 2.2e-10, Sum P(4) = 2.2e-10
Identities = 18/36 (50%), Positives = 27/36 (75%)
Query: 630 LVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 665
L++EP+ FY ++++DF SLYPSI+ YN CF+T
Sbjct: 2589 LIMEPESRFYSNSVLVLDFQSLYPSIVIAYNYCFST 2624
Score = 49 (22.3 bits), Expect = 2.2e-10, Sum P(4) = 2.2e-10
Identities = 14/54 (25%), Positives = 26/54 (48%)
Query: 153 DIQKLLANMPVKKKKKEEVQLNNDDVLADLLSEVNTTIAPTLKL-NTKTNEIVI 205
D+ ++++ +P K + DD +D +SE+N TL L NE+ +
Sbjct: 2416 DLCQMISRVP-DDKIENRFAAERDDYGSDTMSEINIVGRITLNLWRIMRNEVAL 2468
Score = 43 (20.2 bits), Expect = 2.2e-10, Sum P(4) = 2.2e-10
Identities = 19/71 (26%), Positives = 30/71 (42%)
Query: 24 KSTRARSACSSFCVGTQKMEGGRAKRQKIDKTNKFAAFQKLKDLKGQGVKHKYEFTADEN 83
K ++AR A SS V T K + +D K ++ + + + K+ ADE
Sbjct: 1175 KKSKARLANSS--VVTNKRNKRNQTTKLVDDGKKKPRAKQKQRANEKSLSRKHAIPADEK 1232
Query: 84 VYEEVSEKEYT 94
+ SE E T
Sbjct: 1233 MKPH-SEAELT 1242
>DICTYBASE|DDB_G0271608 [details] [associations]
symbol:rev3 "DNA polymerase zeta catalytic subunit"
species:44689 "Dictyostelium discoideum" [GO:0006974 "response to
DNA damage stimulus" evidence=IMP] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA;ISS;IBA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0016035 "zeta
DNA polymerase complex" evidence=ISS;IBA] [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0019985 "translesion synthesis"
evidence=IBA] [GO:0005694 "chromosome" evidence=IBA] [GO:0005634
"nucleus" evidence=IBA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 dictyBase:DDB_G0271608 GO:GO:0005634
GO:GO:0005694 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
GenomeReviews:CM000151_GR EMBL:AAFI02000006 SUPFAM:SSF53098
GO:GO:0003887 eggNOG:COG0417 GO:GO:0019985 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR025687 Pfam:PF14260 KO:K02350
GO:GO:0016035 RefSeq:XP_645553.1 ProteinModelPortal:Q55AZ3
EnsemblProtists:DDB0232271 GeneID:8618010 KEGG:ddi:DDB_G0271608
InParanoid:Q55AZ3 OMA:TTCELEV Uniprot:Q55AZ3
Length = 2701
Score = 161 (61.7 bits), Expect = 2.4e-10, Sum P(3) = 2.4e-10
Identities = 74/338 (21%), Positives = 144/338 (42%)
Query: 685 EHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQY-DIRQKALKLTANSMYGCLG 743
+ + TG+ P +++++++R VK MK+ + + + RQ LK+ AN +G
Sbjct: 2188 DKSIRTGLFPKLLQEVLDTRIMVKRAMKKIDKGDKKMFNILNARQLGLKMMANVAFGYTA 2247
Query: 744 FPNS-RFFAQPLAALVTAKGREILLNTKSLVENL---NYEVIYGDTDSLMISCNVNDYDS 799
S R + + RE L +VE+ N +V+YGDTDSL + +
Sbjct: 2248 ATYSGRMPCIEIGDSIVQTARETLEAAIKIVESSKEWNAKVVYGDTDSLFVLLPGVSREK 2307
Query: 800 VFKIGNQIKSECNKLYKQ-LELDIDGVXXXXXXXXXXXXXXXXXXXXXNGKMICSQEIKG 858
F+IG I ++ L ++L + V + I + KG
Sbjct: 2308 AFEIGQNIANKVTSLNPSPVKLLFEKVYHPCILVNKKRYVGYKYESPSQTEPIF--DAKG 2365
Query: 859 VDVVRRDWSQLASEAGKFVISQILDEQSYTDYSL-DDRLQNIHEHMKKIRTDLDNGFVPL 917
++ VRRD ++ S+ + I I + + D SL + E + + R L +
Sbjct: 2366 IETVRRDSCKVVSKILEKSIRIIFETK---DISLVKSYVIRQWEKILQDRFSLSDFIFSK 2422
Query: 918 TLLEITKQLTKAPEEYTDRKALPHVQ-VALRLNNTNSK-KLKQGDTISYIICEDGTSEAA 975
+ T + + D LP +A RL ++ + + + G+ + Y++ +
Sbjct: 2423 EVRLGTYKCQQQQNNIDDLNGLPPAALIASRLMKSDPRLEPRYGERVKYVVVYGEPNSRL 2482
Query: 976 TQRAYN-IEELKNNSKLKIDVNYYLSQQIHPVVTRLLE 1012
+E L+ + +L+I+V YY+++QI P + R+ +
Sbjct: 2483 IDLVLTPMEFLERSDRLRINVIYYITKQILPALDRIFK 2520
Score = 95 (38.5 bits), Expect = 2.4e-10, Sum P(3) = 2.4e-10
Identities = 16/36 (44%), Positives = 26/36 (72%)
Query: 630 LVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 665
LV++P Y+ ++++DF SLYPSI+ YN C++T
Sbjct: 2039 LVMDPITRLYNSPVVVLDFQSLYPSIMIAYNYCYST 2074
Score = 46 (21.3 bits), Expect = 2.4e-10, Sum P(3) = 2.4e-10
Identities = 11/55 (20%), Positives = 27/55 (49%)
Query: 245 DEIKSNDSVMEVEMNVAEQSKEEPVDDGLW-EQMQIDDWDNSQQTQDVLPEQAKV 298
+ I + D + + EQ +E+ DD E+ ++ + ++ D++ Q+K+
Sbjct: 614 NNINNQDGKLGEQEQEEEQEEEKDDDDSSDNEEFNNQEFQSQREASDIIGTQSKL 668
Score = 45 (20.9 bits), Expect = 3.1e-10, Sum P(3) = 3.1e-10
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 244 KDEIKSNDSVMEVEMNVAEQSKEEPVDDGLWEQMQI 279
K++ K + E E V ++ +EE DD + + QI
Sbjct: 946 KEKEKEKEKEKEKEKEVKKKVEEEEYDDDIIFETQI 981
Score = 44 (20.5 bits), Expect = 3.9e-10, Sum P(3) = 3.9e-10
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 165 KKKKEEVQLNNDDVLADLLSEVNTTIAPTLKLNTKTNEIVI 205
KKK EE + ++D + + ++N T + K N I
Sbjct: 963 KKKVEEEEYDDDIIFETQIPQINFTASIDCSSKIKENNFNI 1003
Score = 40 (19.1 bits), Expect = 7.6e-05, Sum P(3) = 7.6e-05
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 387 LDAFEDIYKQPGTVY----LFGKVFVKENNSHSSCCVIVQN 423
+D +Y P V L+ + + N +S+C VQN
Sbjct: 2041 MDPITRLYNSPVVVLDFQSLYPSIMIAYNYCYSTCLGKVQN 2081
Score = 39 (18.8 bits), Expect = 1.2e-09, Sum P(3) = 1.2e-09
Identities = 13/52 (25%), Positives = 23/52 (44%)
Query: 510 VFGTKSSFLENLLLERKIKGPSWLEFPEAE---KFPSRIS-WCKYEVQCNQM 557
VF + F+ + L+ + G S +EF A P ++ W E +Q+
Sbjct: 199 VFESHIPFILQVFLDYNLSGMSNIEFTNAYFRLPLPEKLKKWGTKEYDLSQL 250
Score = 38 (18.4 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 12/37 (32%), Positives = 16/37 (43%)
Query: 636 KGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQ 672
+ F D F I D I+Q++ I TIP Q
Sbjct: 1306 RAFNDYFEIKEDDLEDAMDILQDFTITSKTIPYSQQQ 1342
Score = 37 (18.1 bits), Expect = 2.0e-09, Sum P(3) = 2.0e-09
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 450 SEFDQIATQYKILD 463
+ FDQ+ + KILD
Sbjct: 491 TSFDQLDSNIKILD 504
>UNIPROTKB|A8IZI8 [details] [associations]
symbol:POLZ1 "DNA polymerase" species:3055 "Chlamydomonas
reinhardtii" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0005694
"chromosome" evidence=IBA] [GO:0016035 "zeta DNA polymerase
complex" evidence=IBA] [GO:0019985 "translesion synthesis"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0005634 GO:GO:0005694 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098 GO:GO:0003887
eggNOG:COG0417 GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211
InterPro:IPR025687 Pfam:PF14260 KO:K02350 GO:GO:0016035
EMBL:DS496129 RefSeq:XP_001694423.1 STRING:A8IZI8
EnsemblPlants:EDP02418 GeneID:5720008 KEGG:cre:CHLREDRAFT_117843
ProtClustDB:CLSN2703070 BioCyc:CHLAMY:CHLREDRAFT_117843-MONOMER
Uniprot:A8IZI8
Length = 729
Score = 159 (61.0 bits), Expect = 4.6e-09, Sum P(3) = 4.6e-09
Identities = 43/127 (33%), Positives = 66/127 (51%)
Query: 687 QVDTGILPSEIKKLVESRRQVKALMKQ-PNLSSDLLMQYDIRQKALKLTANSMYG--CLG 743
QV G+LP +++++++R +K MK+ P LL + RQ LK+ AN YG G
Sbjct: 302 QVRPGVLPRMLREILDTRVMIKGAMKKVPPEDKVLLRVLNARQFGLKMIANVSYGYTAAG 361
Query: 744 FPNSRFFAQPLAALVTAKGREILLNTKSLVEN---LNYEVIYGDTDSLMISCNVNDYDSV 800
F FA+ LA + GR+ L N ++VE+ V+YGDTDS+ +
Sbjct: 362 FSGRMPFAE-LADAIVQSGRQTLENAIAMVESHPEWRARVVYGDTDSMFVLLQGRSRKEA 420
Query: 801 FKIGNQI 807
F+IG +I
Sbjct: 421 FRIGAEI 427
Score = 139 (54.0 bits), Expect = 8.6e-07, Sum P(2) = 8.6e-07
Identities = 53/176 (30%), Positives = 81/176 (46%)
Query: 630 LVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI------------PVRM--LQDS- 674
LV+EP+ Y ++++DF SLYPS + YN+C++T PVR+ Q S
Sbjct: 217 LVMEPESRMYASPVVVLDFQSLYPSQVIAYNLCYSTCVGRPMHARAGGTPVRLGVTQYSY 276
Query: 675 DITTLCEYLPEH-------------QVDTGILPSEIKKLVESRRQVKALMKQ-PNLSSDL 720
PE QV G+LP +++++++R +K MK+ P L
Sbjct: 277 PAPAAGTATPEDLVISPNGVAYVSPQVRPGVLPRMLREILDTRVMIKGAMKKVPPEDKVL 336
Query: 721 LMQYDIRQKALKLTANSMYGCLGFPNS-RFFAQPLAALVTAKGREILLNTKSLVEN 775
L + RQ LK+ AN YG S R LA + GR+ L N ++VE+
Sbjct: 337 LRVLNARQFGLKMIANVSYGYTAAGFSGRMPFAELADAIVQSGRQTLENAIAMVES 392
Score = 64 (27.6 bits), Expect = 4.6e-09, Sum P(3) = 4.6e-09
Identities = 31/166 (18%), Positives = 71/166 (42%)
Query: 855 EIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGF 914
+ KG++ VRRD + A ++++L++ + D L + ++++ T + +
Sbjct: 474 DAKGIETVRRD----SCPA----VAKLLEQSIRLLFGSKD-LSGVKSYLQRQWTKILSNR 524
Query: 915 VPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSK-KLKQGDTISYIICEDGTSE 973
V + K++ P +VA R + + + K + + Y++
Sbjct: 525 VSVQDFIFAKEVRLGTYSANAATMPPAAEVAARAMAADPRAEPKYAERVPYVVVHAEPGA 584
Query: 974 AATQRAYNIEEL-KNNSKLKIDVNYYLSQQIHPVVTRLLEPIEGTD 1018
A + L + L+++ YY+++QI P + R+L + G D
Sbjct: 585 RLVDSAVSPWALVEAGGSLRLNGTYYITKQIIPALERVLSLV-GAD 629
Score = 47 (21.6 bits), Expect = 4.6e-09, Sum P(3) = 4.6e-09
Identities = 12/48 (25%), Positives = 22/48 (45%)
Query: 354 PSTSEPQVHSRTADDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVY 401
P+ S QV + A ++LPL + E++ + F+ +Y Y
Sbjct: 199 PTPSREQVGGQPAMEALPLVMEPESRMYASPVVVLDFQSLYPSQVIAY 246
>UNIPROTKB|F1RZP3 [details] [associations]
symbol:F1RZP3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006260 "DNA replication" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR006134 InterPro:IPR017964 Pfam:PF00136
PROSITE:PS00116 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
GO:GO:0003887 Gene3D:3.90.1600.10 InterPro:IPR023211
InterPro:IPR025687 Pfam:PF14260 GeneTree:ENSGT00550000074640
EMBL:CU915528 Ensembl:ENSSSCT00000004881 Uniprot:F1RZP3
Length = 440
Score = 140 (54.3 bits), Expect = 7.8e-06, P = 7.8e-06
Identities = 70/329 (21%), Positives = 130/329 (39%)
Query: 697 IKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYG--CLGFPNSRFFAQPL 754
+++++++R VK MK L + RQ LKL AN +G F + R +
Sbjct: 2 LEEILKTRLMVKQSMKAYKQDRALSRMLEARQLGLKLIANVTFGYTAANF-SGRMPCIEV 60
Query: 755 AALVTAKGREILLNTKSLVENLNY---EVIYGDTDSLMISCNVNDYDSVFKIGNQIKSEC 811
+ K RE L LV + V+YGDTDS+ + + FKIG +I
Sbjct: 61 GDSIVHKARETLERAIKLVNDTKKWGARVVYGDTDSMFVLLKGATKEQSFKIGQEIAEAV 120
Query: 812 NKLY-KQLELDIDGVXXXXXXXXXXXXXXXXXXXXXNGKMICSQEIKGVDVVRRDWSQLA 870
K ++L + V + + KG++ VRRD +
Sbjct: 121 TATNPKPVKLKFEKVYLPCVLQTKKRYVGYMYETLDQKDPVF--DAKGIETVRRD----S 174
Query: 871 SEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAP 930
A +S+IL+ + D + I +++++ L G + K+ +
Sbjct: 175 CPA----VSKILERSLKLLFETRD-ISLIKQYVQRQCLKLLEGKASIQDFIFAKEY-RGS 228
Query: 931 EEYTDRKALPHVQVALR-LNNTNSKKLKQGDTISYIICEDGTSEAATQRAYNIEELKNNS 989
Y +P +++ + L + + + G+ + Y+I Q E+ +
Sbjct: 229 ASYKPGACVPALELTRKMLTHDRRSEPRVGERVPYVIIYGTPGVPLIQLVRRPVEVMQDP 288
Query: 990 KLKIDVNYYLSQQIHPVVTRLLEPIEGTD 1018
L+++ YY+++QI P + R+ I G D
Sbjct: 289 TLRLNATYYITKQILPPLARIFSLI-GID 316
>UNIPROTKB|I3LER4 [details] [associations]
symbol:I3LER4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006260 "DNA replication" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR006134 InterPro:IPR012337 Pfam:PF00136
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098
GO:GO:0003887 GeneTree:ENSGT00550000074640 EMBL:CU915528
Ensembl:ENSSSCT00000026918 Uniprot:I3LER4
Length = 127
Score = 113 (44.8 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 18/36 (50%), Positives = 27/36 (75%)
Query: 630 LVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 665
L++EP+ FY ++++DF SLYPSI+ YN CF+T
Sbjct: 82 LIMEPESRFYSNSVLVLDFQSLYPSIVIAYNYCFST 117
>UNIPROTKB|Q7RF47 [details] [associations]
symbol:PY04863 "Uncharacterized protein" species:73239
"Plasmodium yoelii yoelii" [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IBA] [GO:0005634 "nucleus" evidence=IBA]
[GO:0005694 "chromosome" evidence=IBA] [GO:0016035 "zeta DNA
polymerase complex" evidence=IBA] [GO:0019985 "translesion
synthesis" evidence=IBA] [GO:0006297 "nucleotide-excision repair,
DNA gap filling" evidence=IBA] [GO:0008408 "3'-5' exonuclease
activity" evidence=IBA] InterPro:IPR012337 GO:GO:0005634
GO:GO:0005694 GO:GO:0003676 SUPFAM:SSF53098 GO:GO:0003887
eggNOG:COG0417 GO:GO:0019985 GO:GO:0016035 EMBL:AABL01001504
RefSeq:XP_725232.1 GeneID:3790571 KEGG:pyo:PY04863
EuPathDB:PlasmoDB:PY04863 Uniprot:Q7RF47
Length = 665
Score = 142 (55.0 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 46/183 (25%), Positives = 84/183 (45%)
Query: 392 DIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKTKEPVSIA---QV 448
DI K ++ LFG+ K + S + ++++DR Y L K+ + I +
Sbjct: 356 DICKHKNSIILFGRTLTKLKR-YKSISIYIEDMDRCYYFLLNKNKKYVKDGIEITYGHEK 414
Query: 449 YSEF---DQIATQYKILDFKSRKIEK-KYAF--NLPGVPDLSE-YLEVRYSAKCPALPSD 501
Y F D ++ KI ++ + K+ K K F NL + E Y +V YS +
Sbjct: 415 YKNFIMLDFVSEFKKIREYHNIKMAKYKIVFRKNLNLSSNNEELYAKVLYSYNYDNISEQ 474
Query: 502 LS-GDTFSHVFGTKSSFLENLLLERKIKGPSWLEFPEAEK-FPSRISWCKYEVQCNQMEK 559
S GDT+S + +EN ++++ +K P W++ + + F + I++C ++ C K
Sbjct: 475 FSKGDTYSSFYCCNDDIVENFIIKKNMKMPCWVKIKDLKNNFSNNIAYCYFD--CTVASK 532
Query: 560 IRI 562
I
Sbjct: 533 KNI 535
Score = 44 (20.5 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 244 KDEIKSNDSVMEVEMNVAEQSKEEPVD------DGLWEQMQIDD 281
KD IK + V+ + N++ +K D DGL +++ID+
Sbjct: 258 KDNIKQEEDVLTMNKNLSSLNKNIKNDNILKDLDGLDIRIEIDE 301
Score = 43 (20.2 bits), Expect = 4.6e-05, Sum P(2) = 4.6e-05
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 144 NIQNPNAKGDIQKLLANMPVKKKKKEEVQLNND 176
N+ N +K N + K K EE+ +N D
Sbjct: 314 NLDKENEDSGDEKNNVNDSILKNKYEEIIINED 346
>GENEDB_PFALCIPARUM|PF10_0362 [details] [associations]
symbol:PF10_0362 "DNA polymerase zeta catalytic
subunit, putative" species:5833 "Plasmodium falciparum" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0016035
"zeta DNA polymerase complex" evidence=ISS] InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR008973 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 PROSITE:PS00116 SMART:SM00486
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF49562
SUPFAM:SSF53098 EMBL:AE014185 GO:GO:0003887 KO:K02350 GO:GO:0016035
RefSeq:XP_001347646.1 ProteinModelPortal:Q8IJ38
EnsemblProtists:PF10_0362:mRNA GeneID:810519 KEGG:pfa:PF10_0362
EuPathDB:PlasmoDB:PF3D7_1037000 HOGENOM:HOG000284524
ProtClustDB:CLSZ2446634 Uniprot:Q8IJ38
Length = 2240
Score = 102 (41.0 bits), Expect = 7.2e-05, Sum P(4) = 7.2e-05
Identities = 39/154 (25%), Positives = 73/154 (47%)
Query: 668 VRMLQDSDITTLCE---YLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQY 724
++ L+ DI Y+ +H+ GI P ++ ++++R +K M + +
Sbjct: 1317 IKNLKSEDIIITSNNTIYVKKHK-RKGICPLFLEDILKTRIMLKRCMGM--YEERVNKKL 1373
Query: 725 DIRQKALKLTANSMYGCLGFPNS-RFFAQPLAALVTAKGREILLNTKSLV-ENLNY-EVI 781
+ R LKL N G +G S R ++ + + GR LL + EN + +++
Sbjct: 1374 NERMGKLKLILNVATGYIGANFSGRMPCVDISESIISIGRNFLLFIIEYIKENYKFVKIL 1433
Query: 782 YGDTDSL-MISCNVNDYDSVFKIGNQIKSECNKL 814
YGDTDSL +++ +D S FK+ +I + N +
Sbjct: 1434 YGDTDSLFLLNETTDDIQSSFKLAYEILNSINNI 1467
Score = 89 (36.4 bits), Expect = 7.2e-05, Sum P(4) = 7.2e-05
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 630 LVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 665
L+L+PK +++ DF SLYPSI+ +NIC++T
Sbjct: 1089 LILQPKSSINFFPLLVFDFQSLYPSILIAFNICYST 1124
Score = 53 (23.7 bits), Expect = 7.2e-05, Sum P(4) = 7.2e-05
Identities = 7/29 (24%), Positives = 18/29 (62%)
Query: 1110 YLPHLINKLSQDMNKYIVKYYEGWLKCED 1138
+ HL++ + Q +++Y K Y+ + C++
Sbjct: 1770 FYSHLLSHIRQTLSEYFNKIYDNQISCDN 1798
Score = 50 (22.7 bits), Expect = 0.00014, Sum P(4) = 0.00014
Identities = 30/106 (28%), Positives = 41/106 (38%)
Query: 949 NNTNSKKLKQGDTISYIICEDGTSEAA-TQRAYNIEELKNN-------SKLK-------- 992
N S+ K D Y CE +E IEELKN K+K
Sbjct: 1982 NEEKSENFKNSDMSEY--CEYDKNELLYVDGMMEIEELKNRILGINIKKKMKKKKKKIKE 2039
Query: 993 IDVNYYLSQQIHPVVTRLLEPIEGTDAVRIAECLGLDTSLYRSQIK 1038
I+ +YY+ I P + R+L D + L LD YR++ K
Sbjct: 2040 INYDYYIQNLIIPPLKRML------DLLPFCS-LNLDEIFYRTKRK 2078
Score = 49 (22.3 bits), Expect = 7.2e-05, Sum P(4) = 7.2e-05
Identities = 16/63 (25%), Positives = 30/63 (47%)
Query: 40 QKMEGGRAKRQKIDKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLK 99
+K + +++K D+ K ++ K+ + + K K E E E EK+ ER +
Sbjct: 472 EKEKQDEREKEKQDEREKEKQDEREKEKQDEREKEKQEEREKEKQEEREKEKQ-EEREKE 530
Query: 100 RQE 102
+QE
Sbjct: 531 KQE 533
>UNIPROTKB|Q8IJ38 [details] [associations]
symbol:PF10_0362 "DNA polymerase" species:36329 "Plasmodium
falciparum 3D7" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=ISS] [GO:0016035 "zeta DNA polymerase complex"
evidence=ISS] InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR008973 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 PROSITE:PS00116 SMART:SM00486 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF49562 SUPFAM:SSF53098
EMBL:AE014185 GO:GO:0003887 KO:K02350 GO:GO:0016035
RefSeq:XP_001347646.1 ProteinModelPortal:Q8IJ38
EnsemblProtists:PF10_0362:mRNA GeneID:810519 KEGG:pfa:PF10_0362
EuPathDB:PlasmoDB:PF3D7_1037000 HOGENOM:HOG000284524
ProtClustDB:CLSZ2446634 Uniprot:Q8IJ38
Length = 2240
Score = 102 (41.0 bits), Expect = 7.2e-05, Sum P(4) = 7.2e-05
Identities = 39/154 (25%), Positives = 73/154 (47%)
Query: 668 VRMLQDSDITTLCE---YLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQY 724
++ L+ DI Y+ +H+ GI P ++ ++++R +K M + +
Sbjct: 1317 IKNLKSEDIIITSNNTIYVKKHK-RKGICPLFLEDILKTRIMLKRCMGM--YEERVNKKL 1373
Query: 725 DIRQKALKLTANSMYGCLGFPNS-RFFAQPLAALVTAKGREILLNTKSLV-ENLNY-EVI 781
+ R LKL N G +G S R ++ + + GR LL + EN + +++
Sbjct: 1374 NERMGKLKLILNVATGYIGANFSGRMPCVDISESIISIGRNFLLFIIEYIKENYKFVKIL 1433
Query: 782 YGDTDSL-MISCNVNDYDSVFKIGNQIKSECNKL 814
YGDTDSL +++ +D S FK+ +I + N +
Sbjct: 1434 YGDTDSLFLLNETTDDIQSSFKLAYEILNSINNI 1467
Score = 89 (36.4 bits), Expect = 7.2e-05, Sum P(4) = 7.2e-05
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 630 LVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 665
L+L+PK +++ DF SLYPSI+ +NIC++T
Sbjct: 1089 LILQPKSSINFFPLLVFDFQSLYPSILIAFNICYST 1124
Score = 53 (23.7 bits), Expect = 7.2e-05, Sum P(4) = 7.2e-05
Identities = 7/29 (24%), Positives = 18/29 (62%)
Query: 1110 YLPHLINKLSQDMNKYIVKYYEGWLKCED 1138
+ HL++ + Q +++Y K Y+ + C++
Sbjct: 1770 FYSHLLSHIRQTLSEYFNKIYDNQISCDN 1798
Score = 50 (22.7 bits), Expect = 0.00014, Sum P(4) = 0.00014
Identities = 30/106 (28%), Positives = 41/106 (38%)
Query: 949 NNTNSKKLKQGDTISYIICEDGTSEAA-TQRAYNIEELKNN-------SKLK-------- 992
N S+ K D Y CE +E IEELKN K+K
Sbjct: 1982 NEEKSENFKNSDMSEY--CEYDKNELLYVDGMMEIEELKNRILGINIKKKMKKKKKKIKE 2039
Query: 993 IDVNYYLSQQIHPVVTRLLEPIEGTDAVRIAECLGLDTSLYRSQIK 1038
I+ +YY+ I P + R+L D + L LD YR++ K
Sbjct: 2040 INYDYYIQNLIIPPLKRML------DLLPFCS-LNLDEIFYRTKRK 2078
Score = 49 (22.3 bits), Expect = 7.2e-05, Sum P(4) = 7.2e-05
Identities = 16/63 (25%), Positives = 30/63 (47%)
Query: 40 QKMEGGRAKRQKIDKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLK 99
+K + +++K D+ K ++ K+ + + K K E E E EK+ ER +
Sbjct: 472 EKEKQDEREKEKQDEREKEKQDEREKEKQDEREKEKQEEREKEKQEEREKEKQ-EEREKE 530
Query: 100 RQE 102
+QE
Sbjct: 531 KQE 533
>UNIPROTKB|A8IXV5 [details] [associations]
symbol:CHLREDRAFT_172920 "Predicted protein" species:3055
"Chlamydomonas reinhardtii" [GO:0000084 "S phase of mitotic cell
cycle" evidence=IBA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IBA] [GO:0005634 "nucleus" evidence=IBA]
[GO:0006287 "base-excision repair, gap-filling" evidence=IBA]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IBA] [GO:0007346 "regulation of mitotic cell cycle"
evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=IBA] [GO:0043625 "delta DNA polymerase complex"
evidence=IBA] [GO:0045004 "DNA replication proofreading"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
Pfam:PF00136 PRINTS:PR00106 GO:GO:0007346 GO:GO:0000166
GO:GO:0003677 SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408
GO:GO:0043137 GO:GO:0003887 GO:GO:0006297 eggNOG:COG0417
GO:GO:0045004 GO:GO:0006287 GO:GO:0043625 EMBL:DS496126
RefSeq:XP_001693242.1 EnsemblPlants:EDP03268 GeneID:5718970
KEGG:cre:CHLREDRAFT_172920 ProtClustDB:CLSN2921640 Uniprot:A8IXV5
Length = 350
Score = 129 (50.5 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 46/135 (34%), Positives = 67/135 (49%)
Query: 637 GFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSE 696
G Y + +DF SLYPS+ + +N+C+TT+ V P+ V GILP+
Sbjct: 177 GLYRGPVATLDFASLYPSLFRAHNLCYTTL-VH--------------PD-DVRLGILPTI 220
Query: 697 IKKLVESRRQVKALMKQ-----PNLSSDL------LMQYDIRQKALKLTANSMYGCLGFP 745
+ L+ +R +A +K ++DL M D RQKALK+TAN++YG G
Sbjct: 221 LAALMTARAATRAAIKALGGGGSGAATDLHAAAAAAMVLDGRQKALKVTANALYGFTGGW 280
Query: 746 NSRFFAQPLAALVTA 760
R AALV+A
Sbjct: 281 KRRRLPAAAAALVSA 295
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.133 0.384 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1274 1154 0.00093 123 3 11 22 0.42 34
38 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 96
No. of states in DFA: 628 (67 KB)
Total size of DFA: 533 KB (2244 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 108.51u 0.12s 108.63t Elapsed: 00:00:42
Total cpu time: 108.57u 0.12s 108.69t Elapsed: 00:00:42
Start: Thu Aug 15 10:49:22 2013 End: Thu Aug 15 10:50:04 2013