BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13610
(123 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P82912|RT11_HUMAN 28S ribosomal protein S11, mitochondrial OS=Homo sapiens GN=MRPS11
PE=1 SV=2
Length = 194
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/98 (44%), Positives = 61/98 (62%), Gaps = 1/98 (1%)
Query: 8 PDENTPDLIFDGLKFKNLPIMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFKNARKGTN 67
P E + L + G KF+ +PI +I+ + NNT + + A SCG EGF+NA+KGT
Sbjct: 67 PGEES-SLRWAGKKFEEIPIAHIKASHNNTQIQVVSASNEPLAFASCGTEGFRNAKKGTG 125
Query: 68 IAAQAAGITIGKKALEIGVSSVRINVRGLGPGRLKALE 105
IAAQ AGI +A + GV +R+ V+GLGPGRL A+
Sbjct: 126 IAAQTAGIAAAARAKQKGVIHIRVVVKGLGPGRLSAMH 163
>sp|Q9DCA2|RT11_MOUSE 28S ribosomal protein S11, mitochondrial OS=Mus musculus GN=Mrps11
PE=2 SV=2
Length = 191
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 60/92 (65%)
Query: 14 DLIFDGLKFKNLPIMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFKNARKGTNIAAQAA 73
L + G+KF+++PI +I+ T NNT + + A SCG EGF+NA+KGT IAAQ A
Sbjct: 69 SLQWAGMKFEDVPIAHIKATYNNTQIQVVSATNASLARASCGTEGFRNAKKGTGIAAQTA 128
Query: 74 GITIGKKALEIGVSSVRINVRGLGPGRLKALE 105
GI KA GV+ +R+ V+G+GPGR A++
Sbjct: 129 GIAAAAKATGKGVTHIRVVVKGMGPGRWSAIK 160
>sp|P82911|RT11_BOVIN 28S ribosomal protein S11, mitochondrial OS=Bos taurus GN=MRPS11
PE=1 SV=2
Length = 197
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/92 (47%), Positives = 59/92 (64%)
Query: 14 DLIFDGLKFKNLPIMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFKNARKGTNIAAQAA 73
L + G KF+ +PI +I+ + NNT + + A SCG EGF+NA+KGT IAAQ A
Sbjct: 75 SLRWAGKKFEEIPIAHIKASYNNTQIHVVSAAHQPLARASCGTEGFRNAKKGTGIAAQTA 134
Query: 74 GITIGKKALEIGVSSVRINVRGLGPGRLKALE 105
GI KA GV+ VR+ V+GLGPGRL A++
Sbjct: 135 GIAAAAKATGKGVTHVRVVVKGLGPGRLSAIK 166
>sp|A8F4T7|RS11_THELT 30S ribosomal protein S11 OS=Thermotoga lettingae (strain ATCC
BAA-301 / DSM 14385 / TMO) GN=rpsK PE=3 SV=1
Length = 128
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 50/78 (64%)
Query: 27 IMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFKNARKGTNIAAQAAGITIGKKALEIGV 86
+++I+ T NNT+++LSDA G L S G GF+ RKGT AAQ A I K+AL +G+
Sbjct: 19 VVHIKSTFNNTVITLSDADGATILWSSGGTAGFEGTRKGTPYAAQLAADKIAKEALRLGI 78
Query: 87 SSVRINVRGLGPGRLKAL 104
V + V+G GPGR A+
Sbjct: 79 KRVDVLVKGPGPGREAAI 96
>sp|Q9A8T0|RS11_CAUCR 30S ribosomal protein S11 OS=Caulobacter crescentus (strain ATCC
19089 / CB15) GN=rpsK PE=3 SV=1
Length = 129
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 48/78 (61%)
Query: 27 IMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFKNARKGTNIAAQAAGITIGKKALEIGV 86
+ ++ + NNT+++++DA+G S GM GFK +RK T AAQ A GKKA E GV
Sbjct: 20 VAHVNASFNNTMITITDAQGNTISWSSAGMMGFKGSRKSTPYAAQMAAEDAGKKAAEHGV 79
Query: 87 SSVRINVRGLGPGRLKAL 104
++ +NV G G GR AL
Sbjct: 80 KTLEVNVSGPGSGRESAL 97
>sp|B8H4F7|RS11_CAUCN 30S ribosomal protein S11 OS=Caulobacter crescentus (strain NA1000
/ CB15N) GN=rpsK PE=3 SV=1
Length = 129
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 48/78 (61%)
Query: 27 IMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFKNARKGTNIAAQAAGITIGKKALEIGV 86
+ ++ + NNT+++++DA+G S GM GFK +RK T AAQ A GKKA E GV
Sbjct: 20 VAHVNASFNNTMITITDAQGNTISWSSAGMMGFKGSRKSTPYAAQMAAEDAGKKAAEHGV 79
Query: 87 SSVRINVRGLGPGRLKAL 104
++ +NV G G GR AL
Sbjct: 80 KTLEVNVSGPGSGRESAL 97
>sp|Q2W2L2|RS11_MAGSA 30S ribosomal protein S11 OS=Magnetospirillum magneticum (strain
AMB-1 / ATCC 700264) GN=rpsK PE=3 SV=1
Length = 131
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 49/78 (62%)
Query: 27 IMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFKNARKGTNIAAQAAGITIGKKALEIGV 86
+ ++ T NNT+++++DA+G S GM+GFK +RK T AAQ A G+KA E G+
Sbjct: 22 VAHVNATFNNTMITITDAQGNTISWSSAGMQGFKGSRKSTPYAAQVAAEDAGRKASEHGM 81
Query: 87 SSVRINVRGLGPGRLKAL 104
++ + V+G G GR AL
Sbjct: 82 RTLEVEVKGPGAGRESAL 99
>sp|Q6F1W8|RS11_MESFL 30S ribosomal protein S11 OS=Mesoplasma florum (strain ATCC 33453 /
NBRC 100688 / NCTC 11704 / L1) GN=rpsK PE=3 SV=1
Length = 130
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 23 KNLP--IMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFKNARKGTNIAAQAAGITIGKK 80
KN+P I +I T NNTI+++SD KG V S G GFK ++K T AAQ K
Sbjct: 15 KNIPKGIAHIHSTFNNTIVTISDEKGNVLSWSSAGAIGFKGSKKSTPYAAQMISEAAAKG 74
Query: 81 ALEIGVSSVRINVRGLGPGRLKAL 104
A++ GV SV++ V+G GPGR A+
Sbjct: 75 AMDQGVKSVQVEVKGPGPGRDAAV 98
>sp|A5V5X6|RS11_SPHWW 30S ribosomal protein S11 OS=Sphingomonas wittichii (strain RW1 /
DSM 6014 / JCM 10273) GN=rpsK PE=3 SV=1
Length = 129
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 48/78 (61%)
Query: 27 IMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFKNARKGTNIAAQAAGITIGKKALEIGV 86
+ ++ + NNT+++++DA+G S GM GFK +RK T AAQ A GKKA E GV
Sbjct: 20 VAHVNASFNNTMITITDAQGNAIAWSSAGMMGFKGSRKSTPYAAQVAAEDAGKKAAEHGV 79
Query: 87 SSVRINVRGLGPGRLKAL 104
++ + V+G G GR AL
Sbjct: 80 RTLEVEVKGPGSGRESAL 97
>sp|Q5NQ41|RS11_ZYMMO 30S ribosomal protein S11 OS=Zymomonas mobilis subsp. mobilis
(strain ATCC 31821 / ZM4 / CP4) GN=rpsK PE=3 SV=1
Length = 129
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 48/78 (61%)
Query: 27 IMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFKNARKGTNIAAQAAGITIGKKALEIGV 86
+ ++ + NNT+++++DA+G S GM GFK +RK T AAQ A GKKA E GV
Sbjct: 20 VAHVNASFNNTMITITDAQGNAISWSSAGMMGFKGSRKSTPYAAQVAAEDAGKKAAEHGV 79
Query: 87 SSVRINVRGLGPGRLKAL 104
++ + V+G G GR AL
Sbjct: 80 RTLEVEVKGPGSGRESAL 97
>sp|Q1GVN5|RS11_SPHAL 30S ribosomal protein S11 OS=Sphingopyxis alaskensis (strain DSM
13593 / LMG 18877 / RB2256) GN=rpsK PE=3 SV=1
Length = 129
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 47/78 (60%)
Query: 27 IMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFKNARKGTNIAAQAAGITIGKKALEIGV 86
+ ++ T NNT+++++DA+G S GM GFK +RK T AAQ GKKA E GV
Sbjct: 20 VAHVNATFNNTMITITDAQGNAIAWSSAGMMGFKGSRKSTPYAAQVCAEDAGKKAAEHGV 79
Query: 87 SSVRINVRGLGPGRLKAL 104
++ + V+G G GR AL
Sbjct: 80 RTLEVEVKGPGAGRESAL 97
>sp|Q49ZE3|RS11_STAS1 30S ribosomal protein S11 OS=Staphylococcus saprophyticus subsp.
saprophyticus (strain ATCC 15305 / DSM 20229) GN=rpsK
PE=3 SV=1
Length = 129
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 55/104 (52%), Gaps = 7/104 (6%)
Query: 1 MARKDIFPDENTPDLIFDGLKFKNLPIMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFK 60
MARK + I +G + +IR T NNTI++++D G S G GFK
Sbjct: 1 MARKQVSRKRRVKKNIENG-------VAHIRSTFNNTIVTITDEFGNALSWSSAGALGFK 53
Query: 61 NARKGTNIAAQAAGITIGKKALEIGVSSVRINVRGLGPGRLKAL 104
++K T AAQ A T K A+E G+ SV + V+G GPGR A+
Sbjct: 54 GSKKSTPFAAQMASETASKTAMEHGLKSVEVTVKGPGPGRESAI 97
>sp|Q39XY1|RS11_GEOMG 30S ribosomal protein S11 OS=Geobacter metallireducens (strain
GS-15 / ATCC 53774 / DSM 7210) GN=rpsK PE=3 SV=1
Length = 131
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
Query: 24 NLP--IMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFKNARKGTNIAAQAAGITIGKKA 81
N+P + +I+ T NNTI++++D G V S G +GFK +RK T AAQ A KKA
Sbjct: 17 NIPNGVAHIQATFNNTIITITDPAGNVVAWSSAGGKGFKGSRKSTPFAAQVAAEDCAKKA 76
Query: 82 LEIGVSSVRINVRGLGPGRLKAL 104
+ G+ SV + V+G G GR AL
Sbjct: 77 QDHGMRSVEVYVKGPGSGRESAL 99
>sp|Q2LQD1|RS11_SYNAS 30S ribosomal protein S11 OS=Syntrophus aciditrophicus (strain SB)
GN=rpsK PE=3 SV=1
Length = 130
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 51/83 (61%), Gaps = 2/83 (2%)
Query: 24 NLP--IMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFKNARKGTNIAAQAAGITIGKKA 81
N+P I +I+ T NNTI++++D G V S GM+GFK +RK T AAQ A KKA
Sbjct: 16 NIPEGIAHIQSTFNNTIITITDPIGNVIAWSSSGMQGFKGSRKSTPFAAQMAAEDCVKKA 75
Query: 82 LEIGVSSVRINVRGLGPGRLKAL 104
E G+ V++ V+G G GR AL
Sbjct: 76 KEHGLRKVQVYVKGPGSGRESAL 98
>sp|B9DM52|RS11_STACT 30S ribosomal protein S11 OS=Staphylococcus carnosus (strain TM300)
GN=rpsK PE=3 SV=1
Length = 129
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 47/78 (60%)
Query: 27 IMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFKNARKGTNIAAQAAGITIGKKALEIGV 86
+ +IR T NNTI++++D G S G GFK ++K T AAQ A T K A+E G+
Sbjct: 20 VAHIRSTFNNTIVTITDEFGNALSWSSAGALGFKGSKKSTPFAAQMASETASKTAMEHGL 79
Query: 87 SSVRINVRGLGPGRLKAL 104
SV + V+G GPGR A+
Sbjct: 80 KSVEVTVKGPGPGRESAI 97
>sp|Q0BUM7|RS11_GRABC 30S ribosomal protein S11 OS=Granulibacter bethesdensis (strain
ATCC BAA-1260 / CGDNIH1) GN=rpsK PE=3 SV=1
Length = 131
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 47/78 (60%)
Query: 27 IMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFKNARKGTNIAAQAAGITIGKKALEIGV 86
+ ++ T NNT++++SDA+G S G +GFK +RK T AAQ A G+KA E G+
Sbjct: 22 VAHVAATFNNTMITISDAQGNAIAWSSAGAQGFKGSRKSTPYAAQVAAEDAGRKAREHGM 81
Query: 87 SSVRINVRGLGPGRLKAL 104
++ I V G G GR AL
Sbjct: 82 ETLEIEVSGPGSGRESAL 99
>sp|A6YGD3|RR11_LEPTE 30S ribosomal protein S11, chloroplastic OS=Leptosira terrestris
GN=rps11 PE=3 SV=1
Length = 129
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 51/78 (65%)
Query: 27 IMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFKNARKGTNIAAQAAGITIGKKALEIGV 86
+++I+V+ NNTI+++++ KG V S G GFK ARKGT AAQ T +K+ + G+
Sbjct: 20 LVHIQVSFNNTIVTITNLKGDVLAWSSAGACGFKGARKGTPFAAQIVAETAARKSFDRGL 79
Query: 87 SSVRINVRGLGPGRLKAL 104
++ V+G GPGR KAL
Sbjct: 80 KQAQVLVKGPGPGRDKAL 97
>sp|A9IHR9|RS11_BORPD 30S ribosomal protein S11 OS=Bordetella petrii (strain ATCC BAA-461
/ DSM 12804 / CCUG 43448) GN=rpsK PE=3 SV=1
Length = 133
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 54/91 (59%), Gaps = 6/91 (6%)
Query: 27 IMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFKNARKGTNIAAQAAGITIGKKALEIGV 86
I ++ + NNTI++++D +G + G GFK +RK T AAQ A T G+ ALE G+
Sbjct: 24 IAHVHASFNNTIITITDRQGNALSWATSGGAGFKGSRKSTPFAAQVAAETAGRVALEYGI 83
Query: 87 SSVRINVRGLGPGR------LKALEIGVSSV 111
++ + ++G GPGR L AL I +SS+
Sbjct: 84 KTLEVRIKGPGPGRESSVRALNALGIKISSI 114
>sp|Q749B1|RS11_GEOSL 30S ribosomal protein S11 OS=Geobacter sulfurreducens (strain ATCC
51573 / DSM 12127 / PCA) GN=rpsK PE=3 SV=1
Length = 131
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
Query: 24 NLP--IMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFKNARKGTNIAAQAAGITIGKKA 81
N+P + +I+ T NNTI++++D G V S G +GFK +RK T AAQ A +KA
Sbjct: 17 NIPNGVAHIQATFNNTIITITDPVGNVVAWSSAGSKGFKGSRKSTPFAAQIAAEECARKA 76
Query: 82 LEIGVSSVRINVRGLGPGRLKAL 104
E G+ SV + V+G G GR AL
Sbjct: 77 QEHGMRSVEVFVKGPGSGRESAL 99
>sp|Q4L889|RS11_STAHJ 30S ribosomal protein S11 OS=Staphylococcus haemolyticus (strain
JCSC1435) GN=rpsK PE=3 SV=1
Length = 129
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 55/104 (52%), Gaps = 7/104 (6%)
Query: 1 MARKDIFPDENTPDLIFDGLKFKNLPIMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFK 60
MARK + I +G + +IR T NNTI++++D G S G GFK
Sbjct: 1 MARKQVSRKRRVKKNIENG-------VAHIRSTFNNTIVTITDEFGNALSWSSAGALGFK 53
Query: 61 NARKGTNIAAQAAGITIGKKALEIGVSSVRINVRGLGPGRLKAL 104
++K T AAQ A T K A+E G+ +V + V+G GPGR A+
Sbjct: 54 GSKKSTPFAAQMASETASKSAMEHGLKTVEVTVKGPGPGRESAI 97
>sp|P66358|RS11_STAAW 30S ribosomal protein S11 OS=Staphylococcus aureus (strain MW2)
GN=rpsK PE=3 SV=1
Length = 129
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 55/104 (52%), Gaps = 7/104 (6%)
Query: 1 MARKDIFPDENTPDLIFDGLKFKNLPIMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFK 60
MARK + I +G + +IR T NNTI++++D G S G GFK
Sbjct: 1 MARKQVSRKRRVKKNIENG-------VAHIRSTFNNTIVTITDEFGNALSWSSAGALGFK 53
Query: 61 NARKGTNIAAQAAGITIGKKALEIGVSSVRINVRGLGPGRLKAL 104
++K T AAQ A T K A+E G+ +V + V+G GPGR A+
Sbjct: 54 GSKKSTPFAAQMASETASKSAMEHGLKTVEVTVKGPGPGRESAI 97
>sp|A8Z332|RS11_STAAT 30S ribosomal protein S11 OS=Staphylococcus aureus (strain USA300 /
TCH1516) GN=rpsK PE=3 SV=1
Length = 129
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 55/104 (52%), Gaps = 7/104 (6%)
Query: 1 MARKDIFPDENTPDLIFDGLKFKNLPIMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFK 60
MARK + I +G + +IR T NNTI++++D G S G GFK
Sbjct: 1 MARKQVSRKRRVKKNIENG-------VAHIRSTFNNTIVTITDEFGNALSWSSAGALGFK 53
Query: 61 NARKGTNIAAQAAGITIGKKALEIGVSSVRINVRGLGPGRLKAL 104
++K T AAQ A T K A+E G+ +V + V+G GPGR A+
Sbjct: 54 GSKKSTPFAAQMASETASKSAMEHGLKTVEVTVKGPGPGRESAI 97
>sp|Q6G796|RS11_STAAS 30S ribosomal protein S11 OS=Staphylococcus aureus (strain MSSA476)
GN=rpsK PE=3 SV=1
Length = 129
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 55/104 (52%), Gaps = 7/104 (6%)
Query: 1 MARKDIFPDENTPDLIFDGLKFKNLPIMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFK 60
MARK + I +G + +IR T NNTI++++D G S G GFK
Sbjct: 1 MARKQVSRKRRVKKNIENG-------VAHIRSTFNNTIVTITDEFGNALSWSSAGALGFK 53
Query: 61 NARKGTNIAAQAAGITIGKKALEIGVSSVRINVRGLGPGRLKAL 104
++K T AAQ A T K A+E G+ +V + V+G GPGR A+
Sbjct: 54 GSKKSTPFAAQMASETASKSAMEHGLKTVEVTVKGPGPGRESAI 97
>sp|Q6GEK8|RS11_STAAR 30S ribosomal protein S11 OS=Staphylococcus aureus (strain MRSA252)
GN=rpsK PE=3 SV=1
Length = 129
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 55/104 (52%), Gaps = 7/104 (6%)
Query: 1 MARKDIFPDENTPDLIFDGLKFKNLPIMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFK 60
MARK + I +G + +IR T NNTI++++D G S G GFK
Sbjct: 1 MARKQVSRKRRVKKNIENG-------VAHIRSTFNNTIVTITDEFGNALSWSSAGALGFK 53
Query: 61 NARKGTNIAAQAAGITIGKKALEIGVSSVRINVRGLGPGRLKAL 104
++K T AAQ A T K A+E G+ +V + V+G GPGR A+
Sbjct: 54 GSKKSTPFAAQMASETASKSAMEHGLKTVEVTVKGPGPGRESAI 97
>sp|P66357|RS11_STAAN 30S ribosomal protein S11 OS=Staphylococcus aureus (strain N315)
GN=rpsK PE=1 SV=1
Length = 129
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 55/104 (52%), Gaps = 7/104 (6%)
Query: 1 MARKDIFPDENTPDLIFDGLKFKNLPIMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFK 60
MARK + I +G + +IR T NNTI++++D G S G GFK
Sbjct: 1 MARKQVSRKRRVKKNIENG-------VAHIRSTFNNTIVTITDEFGNALSWSSAGALGFK 53
Query: 61 NARKGTNIAAQAAGITIGKKALEIGVSSVRINVRGLGPGRLKAL 104
++K T AAQ A T K A+E G+ +V + V+G GPGR A+
Sbjct: 54 GSKKSTPFAAQMASETASKSAMEHGLKTVEVTVKGPGPGRESAI 97
>sp|P66356|RS11_STAAM 30S ribosomal protein S11 OS=Staphylococcus aureus (strain Mu50 /
ATCC 700699) GN=rpsK PE=3 SV=1
Length = 129
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 55/104 (52%), Gaps = 7/104 (6%)
Query: 1 MARKDIFPDENTPDLIFDGLKFKNLPIMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFK 60
MARK + I +G + +IR T NNTI++++D G S G GFK
Sbjct: 1 MARKQVSRKRRVKKNIENG-------VAHIRSTFNNTIVTITDEFGNALSWSSAGALGFK 53
Query: 61 NARKGTNIAAQAAGITIGKKALEIGVSSVRINVRGLGPGRLKAL 104
++K T AAQ A T K A+E G+ +V + V+G GPGR A+
Sbjct: 54 GSKKSTPFAAQMASETASKSAMEHGLKTVEVTVKGPGPGRESAI 97
>sp|A6QJ67|RS11_STAAE 30S ribosomal protein S11 OS=Staphylococcus aureus (strain Newman)
GN=rpsK PE=3 SV=1
Length = 129
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 55/104 (52%), Gaps = 7/104 (6%)
Query: 1 MARKDIFPDENTPDLIFDGLKFKNLPIMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFK 60
MARK + I +G + +IR T NNTI++++D G S G GFK
Sbjct: 1 MARKQVSRKRRVKKNIENG-------VAHIRSTFNNTIVTITDEFGNALSWSSAGALGFK 53
Query: 61 NARKGTNIAAQAAGITIGKKALEIGVSSVRINVRGLGPGRLKAL 104
++K T AAQ A T K A+E G+ +V + V+G GPGR A+
Sbjct: 54 GSKKSTPFAAQMASETASKSAMEHGLKTVEVTVKGPGPGRESAI 97
>sp|Q5HDY3|RS11_STAAC 30S ribosomal protein S11 OS=Staphylococcus aureus (strain COL)
GN=rpsK PE=3 SV=1
Length = 129
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 55/104 (52%), Gaps = 7/104 (6%)
Query: 1 MARKDIFPDENTPDLIFDGLKFKNLPIMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFK 60
MARK + I +G + +IR T NNTI++++D G S G GFK
Sbjct: 1 MARKQVSRKRRVKKNIENG-------VAHIRSTFNNTIVTITDEFGNALSWSSAGALGFK 53
Query: 61 NARKGTNIAAQAAGITIGKKALEIGVSSVRINVRGLGPGRLKAL 104
++K T AAQ A T K A+E G+ +V + V+G GPGR A+
Sbjct: 54 GSKKSTPFAAQMASETASKSAMEHGLKTVEVTVKGPGPGRESAI 97
>sp|Q2YYM1|RS11_STAAB 30S ribosomal protein S11 OS=Staphylococcus aureus (strain bovine
RF122 / ET3-1) GN=rpsK PE=3 SV=1
Length = 129
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 55/104 (52%), Gaps = 7/104 (6%)
Query: 1 MARKDIFPDENTPDLIFDGLKFKNLPIMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFK 60
MARK + I +G + +IR T NNTI++++D G S G GFK
Sbjct: 1 MARKQVSRKRRVKKNIENG-------VAHIRSTFNNTIVTITDEFGNALSWSSAGALGFK 53
Query: 61 NARKGTNIAAQAAGITIGKKALEIGVSSVRINVRGLGPGRLKAL 104
++K T AAQ A T K A+E G+ +V + V+G GPGR A+
Sbjct: 54 GSKKSTPFAAQMASETASKSAMEHGLKTVEVTVKGPGPGRESAI 97
>sp|A5IV09|RS11_STAA9 30S ribosomal protein S11 OS=Staphylococcus aureus (strain JH9)
GN=rpsK PE=3 SV=1
Length = 129
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 55/104 (52%), Gaps = 7/104 (6%)
Query: 1 MARKDIFPDENTPDLIFDGLKFKNLPIMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFK 60
MARK + I +G + +IR T NNTI++++D G S G GFK
Sbjct: 1 MARKQVSRKRRVKKNIENG-------VAHIRSTFNNTIVTITDEFGNALSWSSAGALGFK 53
Query: 61 NARKGTNIAAQAAGITIGKKALEIGVSSVRINVRGLGPGRLKAL 104
++K T AAQ A T K A+E G+ +V + V+G GPGR A+
Sbjct: 54 GSKKSTPFAAQMASETASKSAMEHGLKTVEVTVKGPGPGRESAI 97
>sp|Q2FW31|RS11_STAA8 30S ribosomal protein S11 OS=Staphylococcus aureus (strain NCTC
8325) GN=rpsK PE=3 SV=1
Length = 129
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 55/104 (52%), Gaps = 7/104 (6%)
Query: 1 MARKDIFPDENTPDLIFDGLKFKNLPIMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFK 60
MARK + I +G + +IR T NNTI++++D G S G GFK
Sbjct: 1 MARKQVSRKRRVKKNIENG-------VAHIRSTFNNTIVTITDEFGNALSWSSAGALGFK 53
Query: 61 NARKGTNIAAQAAGITIGKKALEIGVSSVRINVRGLGPGRLKAL 104
++K T AAQ A T K A+E G+ +V + V+G GPGR A+
Sbjct: 54 GSKKSTPFAAQMASETASKSAMEHGLKTVEVTVKGPGPGRESAI 97
>sp|Q2FER4|RS11_STAA3 30S ribosomal protein S11 OS=Staphylococcus aureus (strain USA300)
GN=rpsK PE=3 SV=1
Length = 129
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 55/104 (52%), Gaps = 7/104 (6%)
Query: 1 MARKDIFPDENTPDLIFDGLKFKNLPIMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFK 60
MARK + I +G + +IR T NNTI++++D G S G GFK
Sbjct: 1 MARKQVSRKRRVKKNIENG-------VAHIRSTFNNTIVTITDEFGNALSWSSAGALGFK 53
Query: 61 NARKGTNIAAQAAGITIGKKALEIGVSSVRINVRGLGPGRLKAL 104
++K T AAQ A T K A+E G+ +V + V+G GPGR A+
Sbjct: 54 GSKKSTPFAAQMASETASKSAMEHGLKTVEVTVKGPGPGRESAI 97
>sp|A6U3V0|RS11_STAA2 30S ribosomal protein S11 OS=Staphylococcus aureus (strain JH1)
GN=rpsK PE=3 SV=1
Length = 129
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 55/104 (52%), Gaps = 7/104 (6%)
Query: 1 MARKDIFPDENTPDLIFDGLKFKNLPIMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFK 60
MARK + I +G + +IR T NNTI++++D G S G GFK
Sbjct: 1 MARKQVSRKRRVKKNIENG-------VAHIRSTFNNTIVTITDEFGNALSWSSAGALGFK 53
Query: 61 NARKGTNIAAQAAGITIGKKALEIGVSSVRINVRGLGPGRLKAL 104
++K T AAQ A T K A+E G+ +V + V+G GPGR A+
Sbjct: 54 GSKKSTPFAAQMASETASKSAMEHGLKTVEVTVKGPGPGRESAI 97
>sp|A7X5C5|RS11_STAA1 30S ribosomal protein S11 OS=Staphylococcus aureus (strain Mu3 /
ATCC 700698) GN=rpsK PE=3 SV=1
Length = 129
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 55/104 (52%), Gaps = 7/104 (6%)
Query: 1 MARKDIFPDENTPDLIFDGLKFKNLPIMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFK 60
MARK + I +G + +IR T NNTI++++D G S G GFK
Sbjct: 1 MARKQVSRKRRVKKNIENG-------VAHIRSTFNNTIVTITDEFGNALSWSSAGALGFK 53
Query: 61 NARKGTNIAAQAAGITIGKKALEIGVSSVRINVRGLGPGRLKAL 104
++K T AAQ A T K A+E G+ +V + V+G GPGR A+
Sbjct: 54 GSKKSTPFAAQMASETASKSAMEHGLKTVEVTVKGPGPGRESAI 97
>sp|Q2N9D6|RS11_ERYLH 30S ribosomal protein S11 OS=Erythrobacter litoralis (strain
HTCC2594) GN=rpsK PE=3 SV=1
Length = 129
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 48/78 (61%)
Query: 27 IMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFKNARKGTNIAAQAAGITIGKKALEIGV 86
+ ++ + NNT+++++DA+G S GM GFK +RK T AAQ A G+KA E GV
Sbjct: 20 VAHVNASFNNTMITITDAQGNAISWSSAGMMGFKGSRKSTPYAAQVAADDAGRKAAEHGV 79
Query: 87 SSVRINVRGLGPGRLKAL 104
++ + V+G G GR AL
Sbjct: 80 RTLEVEVKGPGSGRESAL 97
>sp|P59377|RS11_STAES 30S ribosomal protein S11 OS=Staphylococcus epidermidis (strain
ATCC 12228) GN=rpsK PE=3 SV=1
Length = 129
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 55/104 (52%), Gaps = 7/104 (6%)
Query: 1 MARKDIFPDENTPDLIFDGLKFKNLPIMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFK 60
MARK + I +G + +IR T NNTI++++D G S G GFK
Sbjct: 1 MARKQVSRKRRVKKNIENG-------VAHIRSTFNNTIVTITDEFGNALSWSSAGALGFK 53
Query: 61 NARKGTNIAAQAAGITIGKKALEIGVSSVRINVRGLGPGRLKAL 104
++K T AAQ A T K A+E G+ +V + V+G GPGR A+
Sbjct: 54 GSKKSTPFAAQMASETASKTAMEHGLKTVEVTVKGPGPGRESAI 97
>sp|Q5HM24|RS11_STAEQ 30S ribosomal protein S11 OS=Staphylococcus epidermidis (strain
ATCC 35984 / RP62A) GN=rpsK PE=3 SV=1
Length = 129
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 55/104 (52%), Gaps = 7/104 (6%)
Query: 1 MARKDIFPDENTPDLIFDGLKFKNLPIMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFK 60
MARK + I +G + +IR T NNTI++++D G S G GFK
Sbjct: 1 MARKQVSRKRRVKKNIENG-------VAHIRSTFNNTIVTITDEFGNALSWSSAGALGFK 53
Query: 61 NARKGTNIAAQAAGITIGKKALEIGVSSVRINVRGLGPGRLKAL 104
++K T AAQ A T K A+E G+ +V + V+G GPGR A+
Sbjct: 54 GSKKSTPFAAQMASETASKTAMEHGLKTVEVTVKGPGPGRESAI 97
>sp|B0T2E5|RS11_CAUSK 30S ribosomal protein S11 OS=Caulobacter sp. (strain K31) GN=rpsK
PE=3 SV=1
Length = 129
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 47/78 (60%)
Query: 27 IMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFKNARKGTNIAAQAAGITIGKKALEIGV 86
+ ++ + NNT+++++DA+G S G GFK +RK T AAQ A GKKA E GV
Sbjct: 20 VAHVNASFNNTMITITDAQGNTISWSSAGAMGFKGSRKSTPYAAQMAAEDAGKKAAEHGV 79
Query: 87 SSVRINVRGLGPGRLKAL 104
++ +NV G G GR AL
Sbjct: 80 KTLEVNVSGPGSGRESAL 97
>sp|Q9HWF8|RS11_PSEAE 30S ribosomal protein S11 OS=Pseudomonas aeruginosa (strain ATCC
15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=rpsK PE=3
SV=1
Length = 129
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 56/104 (53%), Gaps = 7/104 (6%)
Query: 1 MARKDIFPDENTPDLIFDGLKFKNLPIMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFK 60
MA+ P + + DG I +I + NNTI++++D +G + G GF+
Sbjct: 1 MAKPAARPRKKVKKTVVDG-------IAHIHASFNNTIVTITDRQGNALSWATSGGSGFR 53
Query: 61 NARKGTNIAAQAAGITIGKKALEIGVSSVRINVRGLGPGRLKAL 104
+RK T AAQ A G+ ALE G+ ++ +NV+G GPGR A+
Sbjct: 54 GSRKSTPFAAQVAAERAGQAALEYGLKNLDVNVKGPGPGRESAV 97
>sp|Q02T57|RS11_PSEAB 30S ribosomal protein S11 OS=Pseudomonas aeruginosa (strain
UCBPP-PA14) GN=rpsK PE=3 SV=1
Length = 129
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 56/104 (53%), Gaps = 7/104 (6%)
Query: 1 MARKDIFPDENTPDLIFDGLKFKNLPIMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFK 60
MA+ P + + DG I +I + NNTI++++D +G + G GF+
Sbjct: 1 MAKPAARPRKKVKKTVVDG-------IAHIHASFNNTIVTITDRQGNALSWATSGGSGFR 53
Query: 61 NARKGTNIAAQAAGITIGKKALEIGVSSVRINVRGLGPGRLKAL 104
+RK T AAQ A G+ ALE G+ ++ +NV+G GPGR A+
Sbjct: 54 GSRKSTPFAAQVAAERAGQAALEYGLKNLDVNVKGPGPGRESAV 97
>sp|B7V666|RS11_PSEA8 30S ribosomal protein S11 OS=Pseudomonas aeruginosa (strain LESB58)
GN=rpsK PE=3 SV=1
Length = 129
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 56/104 (53%), Gaps = 7/104 (6%)
Query: 1 MARKDIFPDENTPDLIFDGLKFKNLPIMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFK 60
MA+ P + + DG I +I + NNTI++++D +G + G GF+
Sbjct: 1 MAKPAARPRKKVKKTVVDG-------IAHIHASFNNTIVTITDRQGNALSWATSGGSGFR 53
Query: 61 NARKGTNIAAQAAGITIGKKALEIGVSSVRINVRGLGPGRLKAL 104
+RK T AAQ A G+ ALE G+ ++ +NV+G GPGR A+
Sbjct: 54 GSRKSTPFAAQVAAERAGQAALEYGLKNLDVNVKGPGPGRESAV 97
>sp|A6UZL1|RS11_PSEA7 30S ribosomal protein S11 OS=Pseudomonas aeruginosa (strain PA7)
GN=rpsK PE=3 SV=1
Length = 129
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 56/104 (53%), Gaps = 7/104 (6%)
Query: 1 MARKDIFPDENTPDLIFDGLKFKNLPIMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFK 60
MA+ P + + DG I +I + NNTI++++D +G + G GF+
Sbjct: 1 MAKPAARPRKKVKKTVVDG-------IAHIHASFNNTIVTITDRQGNALSWATSGGSGFR 53
Query: 61 NARKGTNIAAQAAGITIGKKALEIGVSSVRINVRGLGPGRLKAL 104
+RK T AAQ A G+ ALE G+ ++ +NV+G GPGR A+
Sbjct: 54 GSRKSTPFAAQVAAERAGQAALEYGLKNLDVNVKGPGPGRESAV 97
>sp|C1DKN6|RS11_AZOVD 30S ribosomal protein S11 OS=Azotobacter vinelandii (strain DJ /
ATCC BAA-1303) GN=rpsK PE=3 SV=1
Length = 129
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 56/104 (53%), Gaps = 7/104 (6%)
Query: 1 MARKDIFPDENTPDLIFDGLKFKNLPIMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFK 60
MA+ P + + DG I +I + NNTI++++D +G + G GF+
Sbjct: 1 MAKPAARPRKKVKKTVVDG-------IAHIHASFNNTIVTITDRQGNALSWATSGGSGFR 53
Query: 61 NARKGTNIAAQAAGITIGKKALEIGVSSVRINVRGLGPGRLKAL 104
+RK T AAQ A G+ ALE G+ ++ +NV+G GPGR A+
Sbjct: 54 GSRKSTPFAAQVAAERAGQAALEYGLKNLDVNVKGPGPGRESAV 97
>sp|B0C431|RS11_ACAM1 30S ribosomal protein S11 OS=Acaryochloris marina (strain MBIC
11017) GN=rpsK PE=3 SV=1
Length = 130
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 52/84 (61%), Gaps = 2/84 (2%)
Query: 23 KNLP--IMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFKNARKGTNIAAQAAGITIGKK 80
K++P + +I+ T NNTI+++SDA G V S G GFK A+KGT AAQ A + ++
Sbjct: 15 KHVPNGVAHIQSTFNNTIVTISDASGDVVSWASAGSSGFKGAKKGTPFAAQTASESAARR 74
Query: 81 ALEIGVSSVRINVRGLGPGRLKAL 104
A++ G+ + + V G G GR A+
Sbjct: 75 AMDQGMRQIEVMVSGPGAGRETAI 98
>sp|Q4ZMR6|RS11_PSEU2 30S ribosomal protein S11 OS=Pseudomonas syringae pv. syringae
(strain B728a) GN=rpsK PE=3 SV=1
Length = 129
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 56/104 (53%), Gaps = 7/104 (6%)
Query: 1 MARKDIFPDENTPDLIFDGLKFKNLPIMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFK 60
MA+ P + + DG I +I + NNTI++++D +G + G GF+
Sbjct: 1 MAKPAARPRKKVKKTVVDG-------IAHIHASFNNTIVTITDRQGNALSWATSGGSGFR 53
Query: 61 NARKGTNIAAQAAGITIGKKALEIGVSSVRINVRGLGPGRLKAL 104
+RK T AAQ A G+ ALE G+ ++ +NV+G GPGR A+
Sbjct: 54 GSRKSTPFAAQVAAERAGQAALEYGLKNLDVNVKGPGPGRESAV 97
>sp|Q889U8|RS11_PSESM 30S ribosomal protein S11 OS=Pseudomonas syringae pv. tomato
(strain DC3000) GN=rpsK PE=3 SV=1
Length = 129
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 56/104 (53%), Gaps = 7/104 (6%)
Query: 1 MARKDIFPDENTPDLIFDGLKFKNLPIMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFK 60
MA+ P + + DG I +I + NNTI++++D +G + G GF+
Sbjct: 1 MAKPAARPRKKVKKTVVDG-------IAHIHASFNNTIVTITDRQGNALSWATSGGSGFR 53
Query: 61 NARKGTNIAAQAAGITIGKKALEIGVSSVRINVRGLGPGRLKAL 104
+RK T AAQ A G+ ALE G+ ++ +NV+G GPGR A+
Sbjct: 54 GSRKSTPFAAQVAAERAGQAALEYGLKNLDVNVKGPGPGRESAV 97
>sp|Q3K610|RS11_PSEPF 30S ribosomal protein S11 OS=Pseudomonas fluorescens (strain Pf0-1)
GN=rpsK PE=3 SV=1
Length = 129
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 56/104 (53%), Gaps = 7/104 (6%)
Query: 1 MARKDIFPDENTPDLIFDGLKFKNLPIMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFK 60
MA+ P + + DG I +I + NNTI++++D +G + G GF+
Sbjct: 1 MAKPAARPRKKVKKTVVDG-------IAHIHASFNNTIVTITDRQGNALSWATSGGSGFR 53
Query: 61 NARKGTNIAAQAAGITIGKKALEIGVSSVRINVRGLGPGRLKAL 104
+RK T AAQ A G+ ALE G+ ++ +NV+G GPGR A+
Sbjct: 54 GSRKSTPFAAQVAAERAGQAALEYGLKNLDVNVKGPGPGRESAV 97
>sp|C3K2V3|RS11_PSEFS 30S ribosomal protein S11 OS=Pseudomonas fluorescens (strain SBW25)
GN=rpsK PE=3 SV=1
Length = 129
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 56/104 (53%), Gaps = 7/104 (6%)
Query: 1 MARKDIFPDENTPDLIFDGLKFKNLPIMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFK 60
MA+ P + + DG I +I + NNTI++++D +G + G GF+
Sbjct: 1 MAKPAARPRKKVKKTVVDG-------IAHIHASFNNTIVTITDRQGNALSWATSGGSGFR 53
Query: 61 NARKGTNIAAQAAGITIGKKALEIGVSSVRINVRGLGPGRLKAL 104
+RK T AAQ A G+ ALE G+ ++ +NV+G GPGR A+
Sbjct: 54 GSRKSTPFAAQVAAERAGQAALEYGLKNLDVNVKGPGPGRESAV 97
>sp|Q48D59|RS11_PSE14 30S ribosomal protein S11 OS=Pseudomonas syringae pv. phaseolicola
(strain 1448A / Race 6) GN=rpsK PE=3 SV=1
Length = 129
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 56/104 (53%), Gaps = 7/104 (6%)
Query: 1 MARKDIFPDENTPDLIFDGLKFKNLPIMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFK 60
MA+ P + + DG I +I + NNTI++++D +G + G GF+
Sbjct: 1 MAKPAARPRKKVKKTVVDG-------IAHIHASFNNTIVTITDRQGNALSWATSGGSGFR 53
Query: 61 NARKGTNIAAQAAGITIGKKALEIGVSSVRINVRGLGPGRLKAL 104
+RK T AAQ A G+ ALE G+ ++ +NV+G GPGR A+
Sbjct: 54 GSRKSTPFAAQVAAERAGQAALEYGLKNLDVNVKGPGPGRESAV 97
>sp|Q7VTA7|RS11_BORPE 30S ribosomal protein S11 OS=Bordetella pertussis (strain Tohama I
/ ATCC BAA-589 / NCTC 13251) GN=rpsK PE=3 SV=1
Length = 133
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 54/91 (59%), Gaps = 6/91 (6%)
Query: 27 IMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFKNARKGTNIAAQAAGITIGKKALEIGV 86
I ++ + NNTI++++D +G + G GFK +RK T AAQ A T G+ A+E G+
Sbjct: 24 IAHVHASFNNTIITITDRQGNALSWATSGGAGFKGSRKSTPFAAQVAAETAGRVAMEYGI 83
Query: 87 SSVRINVRGLGPGR------LKALEIGVSSV 111
++ + ++G GPGR L AL I +SS+
Sbjct: 84 KTLEVRIKGPGPGRESSVRALNALGIKISSI 114
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.140 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,272,265
Number of Sequences: 539616
Number of extensions: 1545470
Number of successful extensions: 6480
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 58
Number of HSP's that attempted gapping in prelim test: 4969
Number of HSP's gapped (non-prelim): 1560
length of query: 123
length of database: 191,569,459
effective HSP length: 90
effective length of query: 33
effective length of database: 143,004,019
effective search space: 4719132627
effective search space used: 4719132627
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)