Query psy13610
Match_columns 123
No_of_seqs 106 out of 724
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 15:31:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13610.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13610hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r8n_K 30S ribosomal protein S 100.0 1.6E-38 5.5E-43 228.4 9.9 92 23-114 4-96 (117)
2 2vqe_K 30S ribosomal protein S 100.0 2.3E-37 7.9E-42 225.6 11.4 91 24-114 15-106 (129)
3 3j20_M 30S ribosomal protein S 100.0 3.7E-36 1.3E-40 221.2 12.1 92 23-114 12-113 (137)
4 3bbn_K Ribosomal protein S11; 100.0 7.2E-37 2.5E-41 225.7 7.7 92 23-114 27-119 (140)
5 3u5c_O RP59A, 40S ribosomal pr 100.0 4.4E-36 1.5E-40 220.9 6.1 92 23-114 12-113 (137)
6 2xzm_K RPS14E; ribosome, trans 100.0 2.4E-33 8.1E-38 209.1 9.6 92 23-114 26-127 (151)
7 3r8s_O 50S ribosomal protein L 96.9 0.0066 2.3E-07 42.8 8.7 89 24-112 21-115 (116)
8 3v2d_S 50S ribosomal protein L 96.4 0.012 4.1E-07 41.4 7.0 85 25-112 23-111 (112)
9 1vq8_N 50S ribosomal protein L 95.6 0.12 4.2E-06 39.2 10.0 92 23-115 30-132 (187)
10 1ovy_A 50S ribosomal protein L 95.6 0.042 1.4E-06 39.0 6.8 89 23-111 26-118 (120)
11 3j21_O 50S ribosomal protein L 94.3 0.072 2.5E-06 40.9 5.5 91 24-114 31-132 (203)
12 3bbo_Q Ribosomal protein L18; 93.6 0.041 1.4E-06 41.0 2.9 89 24-112 64-160 (161)
13 2zjr_L 50S ribosomal protein L 93.0 0.068 2.3E-06 37.6 3.0 85 24-112 25-113 (114)
14 2zkr_n 60S ribosomal protein L 86.9 4.5 0.00015 32.6 9.1 98 16-114 37-174 (297)
15 4a17_M RPL5, 60S ribosomal pro 82.1 3.9 0.00013 33.0 6.8 61 24-84 47-112 (301)
16 3u5e_D 60S ribosomal protein L 72.9 16 0.00054 29.5 7.8 61 24-84 47-112 (297)
17 3iz5_Q 60S ribosomal protein L 61.2 13 0.00046 30.0 5.2 52 33-84 57-113 (304)
18 3cwf_A Alkaline phosphatase sy 36.0 20 0.00067 23.3 2.1 20 33-52 45-64 (122)
19 3g9k_S Capsule biosynthesis pr 35.9 35 0.0012 24.8 3.6 23 37-59 2-24 (177)
20 3qd7_X Uncharacterized protein 34.3 1E+02 0.0035 21.4 5.8 40 65-105 55-97 (137)
21 2r48_A Phosphotransferase syst 34.0 55 0.0019 22.1 4.1 27 68-95 16-42 (106)
22 2m1z_A LMO0427 protein; homolo 34.0 60 0.002 21.9 4.3 27 69-96 17-43 (106)
23 2r4q_A Phosphotransferase syst 32.8 56 0.0019 22.1 4.0 26 69-95 17-42 (106)
24 4h8a_A Ureidoglycolate dehydro 32.1 1.7E+02 0.0057 23.4 7.4 69 43-111 64-134 (339)
25 1nxu_A Hypothetical oxidoreduc 31.7 1.7E+02 0.0058 23.3 7.3 69 43-111 62-132 (333)
26 2kyr_A Fructose-like phosphotr 31.7 65 0.0022 22.0 4.2 27 69-96 20-46 (111)
27 1wtj_A Ureidoglycolate dehydro 31.3 1.7E+02 0.0058 23.4 7.3 69 43-111 72-142 (343)
28 1v9n_A Malate dehydrogenase; r 31.1 1.6E+02 0.0055 23.7 7.2 69 43-111 73-143 (360)
29 2fhm_A Probable acylphosphatas 30.8 92 0.0031 19.8 4.7 36 87-122 2-41 (91)
30 1w2i_A Acylphosphatase; hydrol 30.6 77 0.0026 20.3 4.3 37 86-122 3-43 (91)
31 3trg_A Acylphosphatase; fatty 30.2 67 0.0023 21.0 4.0 38 85-122 10-51 (98)
32 3hst_B Protein RV2228C/MT2287; 29.9 1.2E+02 0.0039 19.7 5.6 30 64-93 43-73 (141)
33 3maj_A DNA processing chain A; 29.3 2.2E+02 0.0075 23.3 7.7 55 57-117 130-186 (382)
34 1z2i_A Malate dehydrogenase; s 28.0 1.7E+02 0.0059 23.5 6.8 56 56-111 85-141 (358)
35 1leh_A Leucine dehydrogenase; 27.9 32 0.0011 27.7 2.4 56 65-120 149-206 (364)
36 1ulr_A Putative acylphosphatas 27.9 96 0.0033 19.7 4.4 35 88-122 3-41 (88)
37 1vbi_A Type 2 malate/lactate d 27.9 1.5E+02 0.0053 23.6 6.5 68 44-111 63-131 (344)
38 2vh7_A Acylphosphatase-1; hydr 27.7 98 0.0033 20.1 4.5 38 85-122 6-47 (99)
39 3k92_A NAD-GDH, NAD-specific g 27.6 42 0.0015 27.9 3.2 49 64-113 198-247 (424)
40 1v9l_A Glutamate dehydrogenase 27.2 54 0.0019 27.2 3.8 50 64-114 187-237 (421)
41 2g8y_A Malate/L-lactate dehydr 27.1 1.8E+02 0.0062 23.7 6.8 69 43-111 88-158 (385)
42 3ur8_A Glucan endo-1,3-beta-D- 27.0 83 0.0029 25.1 4.7 36 75-115 18-54 (323)
43 3i0p_A Malate dehydrogenase; a 26.7 1.8E+02 0.0061 23.4 6.7 69 43-111 69-139 (365)
44 4fcc_A Glutamate dehydrogenase 26.6 49 0.0017 27.8 3.4 50 64-114 212-262 (450)
45 2x06_A L-sulfolactate dehydrog 26.0 1.4E+02 0.0048 23.9 5.9 69 43-111 62-132 (344)
46 1bgv_A Glutamate dehydrogenase 25.9 36 0.0012 28.5 2.5 50 64-114 207-257 (449)
47 1auu_A SACY; antitermination, 25.5 1.1E+02 0.0037 18.3 4.0 32 30-63 3-34 (55)
48 2bjd_A Acylphosphatase; hypert 25.3 1E+02 0.0035 20.2 4.3 37 86-122 13-53 (101)
49 3aog_A Glutamate dehydrogenase 24.3 70 0.0024 26.7 3.9 50 64-114 212-262 (440)
50 3r1m_A Putative uncharacterize 24.1 36 0.0012 28.2 2.0 32 77-121 81-112 (385)
51 3uoe_A Dehydrogenase; structur 24.0 1.7E+02 0.0057 23.7 6.0 69 43-111 85-155 (357)
52 1c1d_A L-phenylalanine dehydro 23.9 1.3E+02 0.0045 24.1 5.4 50 65-117 152-205 (355)
53 1urr_A CG18505 protein; acylph 22.9 1.2E+02 0.004 19.8 4.2 37 86-122 10-50 (102)
54 1rfm_A L-sulfolactate dehydrog 22.7 1.7E+02 0.0058 23.4 5.8 57 56-112 76-133 (344)
55 3rys_A Adenosine deaminase 1; 21.9 1.3E+02 0.0044 23.8 4.9 42 66-107 75-121 (343)
56 3d33_A Domain of unknown funct 21.7 1E+02 0.0035 20.7 3.8 27 28-54 42-69 (108)
57 1xrh_A Ureidoglycolate dehydro 21.7 1.6E+02 0.0055 23.6 5.5 53 59-111 81-134 (351)
58 1aps_A Acylphosphatase; hydrol 21.5 90 0.0031 20.2 3.3 38 85-122 5-46 (98)
59 3aoe_E Glutamate dehydrogenase 21.3 88 0.003 25.9 3.9 50 64-114 195-245 (419)
60 1l1c_A Transcription antitermi 21.0 1.2E+02 0.004 18.1 3.5 33 30-63 3-35 (55)
61 3iar_A Adenosine deaminase; pu 20.7 1.3E+02 0.0046 24.0 4.9 31 64-94 70-100 (367)
62 1mp9_A Tata-binding protein; t 20.6 1.1E+02 0.0037 22.7 4.0 46 39-87 52-97 (198)
63 2dg5_B Gamma-glutamyltranspept 20.1 97 0.0033 22.6 3.6 18 37-54 2-19 (190)
No 1
>3r8n_K 30S ribosomal protein S11; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_K 3fih_K* 3iy8_K 3j18_K* 2wwl_K 3oar_K 3oaq_K 3ofb_K 3ofa_K 3ofp_K 3ofx_K 3ofy_K 3ofo_K 3r8o_K 4a2i_K 4gd1_K 4gd2_K 3i1m_K 1vs7_K* 3e1a_C ...
Probab=100.00 E-value=1.6e-38 Score=228.36 Aligned_cols=92 Identities=29% Similarity=0.445 Sum_probs=88.6
Q ss_pred ccccEEEEEecCCCceEEEeCCCCCEEEEEeecccccccCCCCChHHHHHHHHHHHHHHHHcCCeEEEEEEEcCCcCHHH
Q psy13610 23 KNLPIMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFKNARKGTNIAAQAAGITIGKKALEIGVSSVRINVRGLGPGRLK 102 (123)
Q Consensus 23 ~~~~i~hI~st~NNTiitlTD~~G~~l~~~S~G~~GfK~~rK~T~~Aa~~aa~~v~~~a~~~Gi~~i~V~ikG~G~GR~~ 102 (123)
...+|+||++|+||||||+||++|++++|.|+|++|||++||+||||||+||++++++|+|+||+.|+|+|||||+|||+
T Consensus 4 ~~~gi~hI~as~NNTivtiTD~~G~~i~~~S~G~~gfKg~rk~tp~AA~~aa~~~~~~~~~~Gi~~v~v~vkG~G~Gr~~ 83 (117)
T 3r8n_K 4 VSDGVAHIHASFNNTIVTITDRQGNALGWATAGGSGFRGSRKSTPFAAQVAAERCADAVKEYGIKNLEVMVKGPGPGRES 83 (117)
T ss_dssp CCEEEEEEEECSSCEEEEEECTTSCCSEEEETGGGSCCGGGGSSHHHHHHHHHHHHHHHTTSCCCEEEEEEECSSSSTTH
T ss_pred cceeEEEEEcccCCEEEEEEcCCCCEEEEEcCCccccCCCccCCHHHHHHHHHHHHHHHHHhCCcEEEEEEeCCCccHHH
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhh-hcCceee
Q psy13610 103 ALEIG-VSSVRIN 114 (123)
Q Consensus 103 alkal-~~g~~i~ 114 (123)
+||+| ++|++|+
T Consensus 84 airaL~~~Gl~I~ 96 (117)
T 3r8n_K 84 TIRALNAAGFRIT 96 (117)
T ss_dssp HHHHHHHTTCEEE
T ss_pred HHHHHHhCCCEEE
Confidence 99987 7899875
No 2
>2vqe_K 30S ribosomal protein S11, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.55.4.1 PDB: 1gix_N* 1hnw_K* 1hnx_K* 1hnz_K* 1hr0_K 1ibk_K* 1ibl_K* 1ibm_K 1j5e_K 1jgo_N* 1jgp_N* 1jgq_N* 1ml5_N* 1n32_K* 1n33_K* 1n34_K 1n36_K 1xmo_K* 1xmq_K* 1xnq_K* ...
Probab=100.00 E-value=2.3e-37 Score=225.61 Aligned_cols=91 Identities=36% Similarity=0.498 Sum_probs=87.8
Q ss_pred cccEEEEEecCCCceEEEeCCCCCEEEEEeecccccccCCCCChHHHHHHHHHHHHHHHHcCCeEEEEEEEcCCcCHHHH
Q psy13610 24 NLPIMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFKNARKGTNIAAQAAGITIGKKALEIGVSSVRINVRGLGPGRLKA 103 (123)
Q Consensus 24 ~~~i~hI~st~NNTiitlTD~~G~~l~~~S~G~~GfK~~rK~T~~Aa~~aa~~v~~~a~~~Gi~~i~V~ikG~G~GR~~a 103 (123)
..+++||++|+||||||+||++|++++|.|+|++|||++||+||||||+||++++++|+|+||+.|+|+|||||+|||++
T Consensus 15 ~~gi~hI~as~NNTivtiTd~~G~~~~~~SaG~~gfKg~rk~tp~AA~~aa~~~~~~~~~~Gi~~v~V~vkG~G~Gre~a 94 (129)
T 2vqe_K 15 ASGRAYIHASYNNTIVTITDPDGNPITWSSGGVIGYKGSRKGTPYAAQLAALDAAKKAMAYGMQSVDVIVRGTGAGREQA 94 (129)
T ss_dssp SEEEEEEEECSSCEEEEEECTTSCEEEECCTTTTTCCSGGGGSHHHHHHHHHHHHHHHHTTTCCEEEEEEESCCTTHHHH
T ss_pred cceEEEEEecCCCEEEEEEcCCCCEEEEEeccceeEcCCCcCCHHHHHHHHHHHHHHHHHhCCeEEEEEEECCCCCHHHH
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhh-hcCceee
Q psy13610 104 LEIG-VSSVRIN 114 (123)
Q Consensus 104 lkal-~~g~~i~ 114 (123)
||+| ++|++|+
T Consensus 95 iraL~~~Gl~I~ 106 (129)
T 2vqe_K 95 IRALQASGLQVK 106 (129)
T ss_dssp HHHHHTSSSEEE
T ss_pred HHHHHHCCCEEE
Confidence 9987 6698875
No 3
>3j20_M 30S ribosomal protein S11P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=3.7e-36 Score=221.24 Aligned_cols=92 Identities=29% Similarity=0.342 Sum_probs=88.4
Q ss_pred ccccEEEEEecCCCceEEEeCCCCC-EEEEEeecccccccCCCCChHHHHHHHHHHHHHHHHcCCeEEEEEEEc------
Q psy13610 23 KNLPIMNIRVTKNNTILSLSDAKGV-VKLLRSCGMEGFKNARKGTNIAAQAAGITIGKKALEIGVSSVRINVRG------ 95 (123)
Q Consensus 23 ~~~~i~hI~st~NNTiitlTD~~G~-~l~~~S~G~~GfK~~rK~T~~Aa~~aa~~v~~~a~~~Gi~~i~V~ikG------ 95 (123)
+.++|+||++||||||||+||++|+ +++|+|+|++|||+++|+||||||+||++++++|+++||+.|+|+|||
T Consensus 12 ~~~gi~hI~asfNNTivtiTD~~G~~~i~~~S~G~~gfkg~~ksTp~AA~~aa~~~~~~a~e~Gi~~v~V~vkG~gg~~~ 91 (137)
T 3j20_M 12 EKWGIAHIYSSFNNTIIHITDITGAETISRWSGGMVVKADRDEPSPYAAMLAARRAAEEALEKGIVGVHIRVRAPGGSKS 91 (137)
T ss_dssp CEEEEEEEEECSSCEEEEEEESSSCSEEEEEEGGGTCSCTTTSSSHHHHHHHHHHHHHHHHHHTEEEEEEEEECCCSSSC
T ss_pred CcceEEEEEcCCCCEEEEEEcCCCCEEEEEEccceeeecCCccCCHHHHHHHHHHHHHHHHHcCCeEEEEEEECCCCCCC
Confidence 4799999999999999999999995 999999999999999999999999999999999999999999999999
Q ss_pred --CCcCHHHHHHhh-hcCceee
Q psy13610 96 --LGPGRLKALEIG-VSSVRIN 114 (123)
Q Consensus 96 --~G~GR~~alkal-~~g~~i~ 114 (123)
||+||++|||+| ++|++|+
T Consensus 92 ~~pG~GresairaL~~~Gl~I~ 113 (137)
T 3j20_M 92 KTPGPGAQAAIRALARAGLKIG 113 (137)
T ss_dssp CSCCTHHHHHHHHHHHHTCEEE
T ss_pred cCCCCcHHHHHHHHHhCCCEEE
Confidence 799999999987 7899975
No 4
>3bbn_K Ribosomal protein S11; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=100.00 E-value=7.2e-37 Score=225.72 Aligned_cols=92 Identities=28% Similarity=0.426 Sum_probs=88.1
Q ss_pred ccccEEEEEecCCCceEEEeCCCCCEEEEEeecccccccCCCCChHHHHHHHHHHHHHHHHcCCeEEEEEEEcCCcCHHH
Q psy13610 23 KNLPIMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFKNARKGTNIAAQAAGITIGKKALEIGVSSVRINVRGLGPGRLK 102 (123)
Q Consensus 23 ~~~~i~hI~st~NNTiitlTD~~G~~l~~~S~G~~GfK~~rK~T~~Aa~~aa~~v~~~a~~~Gi~~i~V~ikG~G~GR~~ 102 (123)
...+++||++|+||||||+||++|++++|.|+|++|||++||+||||||+||++++++|+|+||+.|+|+|||||+|||+
T Consensus 27 ~~~gi~hI~as~NNTivtiTD~~G~~i~~~SaG~~GfKg~rksTp~AA~~aa~~~~~~a~e~Gi~~v~V~vkG~G~GRea 106 (140)
T 3bbn_K 27 IPKGVIHVQASFNNTIVTVTDVRGRVVSWASAGTCGFRGTKRGTPFAAQTAAGNAIRTVVEQGMQRAEVMIKGPGLGRDA 106 (140)
T ss_dssp CCCCEEEEEECSSCEEEEEECSSSCEEEEEETTTSSCCTTSCSSHHHHHHHHTSGGGTSTTTCCCEEEEEEESCSTTSSH
T ss_pred ceeeEEEEEecCCCEEEEEEcCCCCEEEEEeccceeEcccccCCHHHHHHHHHHHHHHHHHhCCeEEEEEEECCCCcHHH
Confidence 35699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhh-hcCceee
Q psy13610 103 ALEIG-VSSVRIN 114 (123)
Q Consensus 103 alkal-~~g~~i~ 114 (123)
+||+| ++|++|+
T Consensus 107 airaL~~~Gl~I~ 119 (140)
T 3bbn_K 107 ALRAIRRSGILLS 119 (140)
T ss_dssp HHHHHHTTTCEEE
T ss_pred HHHHHHHCCCEEE
Confidence 99987 6698875
No 5
>3u5c_O RP59A, 40S ribosomal protein S14-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_K 3o30_H 3o2z_H 3u5g_O 1s1h_K 3jyv_K*
Probab=100.00 E-value=4.4e-36 Score=220.85 Aligned_cols=92 Identities=26% Similarity=0.386 Sum_probs=88.1
Q ss_pred ccccEEEEEecCCCceEEEeCCCCCEEEEEeecccccccCC-CCChHHHHHHHHHHHHHHHHcCCeEEEEEE--------
Q psy13610 23 KNLPIMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFKNAR-KGTNIAAQAAGITIGKKALEIGVSSVRINV-------- 93 (123)
Q Consensus 23 ~~~~i~hI~st~NNTiitlTD~~G~~l~~~S~G~~GfK~~r-K~T~~Aa~~aa~~v~~~a~~~Gi~~i~V~i-------- 93 (123)
..++|+||++||||||||+||++|+++.|+|+|++|||++| |+||||||+||++++++|+++||+.|+|+|
T Consensus 12 ~~~gi~hI~asfNNTivtvTD~~G~~~~~~ssG~~gfKg~r~ksTpyAAq~aa~~~a~~a~e~Gi~~v~V~vra~gg~~~ 91 (137)
T 3u5c_O 12 QVFGVARIYASFNDTFVHVTDLSGKETIARVTGGMKVKADRDESSPYAAMLAAQDVAAKCKEVGITAVHVKIRATGGTRT 91 (137)
T ss_dssp CCEEECCEEEETTEEEECCEETTSSSCCCCCBTTTTSCCSTTTTCHHHHHHHHHHHHHHHHHHTCCEEECEEECSCTTSC
T ss_pred eeeEEEEEEccCCCEEEEEEcCCCCEEEEEeCCCcEEeCCcccCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeccCCCcc
Confidence 46899999999999999999999999999999999999999 899999999999999999999999999999
Q ss_pred EcCCcCHHHHHHhh-hcCceee
Q psy13610 94 RGLGPGRLKALEIG-VSSVRIN 114 (123)
Q Consensus 94 kG~G~GR~~alkal-~~g~~i~ 114 (123)
||||+|||+|||+| ++|++|+
T Consensus 92 kgpG~Gr~sairaL~~~Gl~I~ 113 (137)
T 3u5c_O 92 KTPGPGGQAALRALARSGLRIG 113 (137)
T ss_dssp CSCCGGGHHHHHHHHTTTCEEC
T ss_pred cCCCcchHHHHHHHHhCCCEEE
Confidence 69999999999987 7899875
No 6
>2xzm_K RPS14E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_K 3j0o_K 3j0l_K 2zkq_k 3iz6_K 3jyv_K*
Probab=100.00 E-value=2.4e-33 Score=209.15 Aligned_cols=92 Identities=27% Similarity=0.392 Sum_probs=85.6
Q ss_pred ccccEEEEEecCCCceEEEeCCCCCEEEEEeecccccccCC-CCChHHHHHHHHHHHHHHHHcCCeEEEEEEEcC-----
Q psy13610 23 KNLPIMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFKNAR-KGTNIAAQAAGITIGKKALEIGVSSVRINVRGL----- 96 (123)
Q Consensus 23 ~~~~i~hI~st~NNTiitlTD~~G~~l~~~S~G~~GfK~~r-K~T~~Aa~~aa~~v~~~a~~~Gi~~i~V~ikG~----- 96 (123)
...+++||++|||||||||||++|+++.|+|+|.++||+++ |+||||||+||++++++|+++||+.|+|+|||+
T Consensus 26 ~~~gi~hI~asfNNTiVtiTD~~G~~~~~~ssgg~~~k~~r~ksTpyAAq~aa~~~a~~a~e~Gi~~v~V~vkG~gg~~~ 105 (151)
T 2xzm_K 26 NVFGVCHIMATWNDTFIHVTDLSGRETLVRVTGGMKVKADREESSPYAAMQAAIDVVNRCKELKINALHIKLRAKGGVET 105 (151)
T ss_dssp CCEEEEEEEBCSSCBCCEEECTTCCSEEEECCHHHHCSSGGGGSCHHHHHHHHHHHHHHHHHHTCCEEEEEEECCCTTSC
T ss_pred eeeeEEEEEccCCCEEEEEECCCCCEEEEEecCcceEeCCCCcCCHHHHHHHHHHHHHHHHHcCCeEEEEEEEcCCCCCc
Confidence 36799999999999999999999998888888888888777 999999999999999999999999999999977
Q ss_pred ---CcCHHHHHHhh-hcCceee
Q psy13610 97 ---GPGRLKALEIG-VSSVRIN 114 (123)
Q Consensus 97 ---G~GR~~alkal-~~g~~i~ 114 (123)
|+||++|||+| ++|++|+
T Consensus 106 kgpG~GresairaL~~~GlkI~ 127 (151)
T 2xzm_K 106 KQPGPGAQSALRALARSGMKIG 127 (151)
T ss_dssp CSCCSHHHHHHHHHHHTSCEEE
T ss_pred cCCCccHHHHHHHHHHCCCEEE
Confidence 99999999987 6799986
No 7
>3r8s_O 50S ribosomal protein L18; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_O 3j19_O 2wwq_O 3oat_O* 3oas_O* 3ofd_O 3ofc_O 3ofr_O* 3ofz_O* 3og0_O 3ofq_O 3r8t_O 3i1n_O 1p85_M 1p86_M 1vs8_O 1vs6_O 2aw4_O 2awb_O 1vt2_O ...
Probab=96.91 E-value=0.0066 Score=42.83 Aligned_cols=89 Identities=20% Similarity=0.262 Sum_probs=68.0
Q ss_pred cccEEEEEecCCCceEEEeCC-CCCEEEEEeecccccccCC--CCChHHHHHHHHHHHHHHHHcCCeEEEEEEEcCCc-C
Q psy13610 24 NLPIMNIRVTKNNTILSLSDA-KGVVKLLRSCGMEGFKNAR--KGTNIAAQAAGITIGKKALEIGVSSVRINVRGLGP-G 99 (123)
Q Consensus 24 ~~~i~hI~st~NNTiitlTD~-~G~~l~~~S~G~~GfK~~r--K~T~~Aa~~aa~~v~~~a~~~Gi~~i~V~ikG~G~-G 99 (123)
+.|.+-|+-|.++....+.|. .|.+++..|+=-...++.. .....||..+++-++++|++.||+.+..-..|+=+ |
T Consensus 21 ~rpRL~V~rSnkhIyAQiidd~~g~tlasAST~e~~~~~~~~~~~n~~AA~~vG~llA~Ral~~GI~~vvfDrgg~~yhG 100 (116)
T 3r8s_O 21 GATRLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDVSFDRSGFQYHG 100 (116)
T ss_dssp TCCEEEEEECSSCEEEEEECTTSSCEEEECCSSSHHHHTTCSCSSSHHHHHHHHHHHHHHHHTTTCCCCEEECTTSCSSS
T ss_pred CCCEEEEEEeCCEEEEEEEEcCCCeEEEEEeeCchhhccccCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEecCCCcccH
Confidence 578889999999999999986 4668888888776666543 45678899999999999999999998877656433 6
Q ss_pred HHHHHH-hhhc-Cce
Q psy13610 100 RLKALE-IGVS-SVR 112 (123)
Q Consensus 100 R~~alk-al~~-g~~ 112 (123)
|-.++- ++|+ |++
T Consensus 101 rV~Ala~~are~Gl~ 115 (116)
T 3r8s_O 101 RVQALADAAREAGLQ 115 (116)
T ss_dssp HHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhCCC
Confidence 755554 5543 553
No 8
>3v2d_S 50S ribosomal protein L18; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_M 2hgj_R 2hgq_R 2hgu_R 1vsa_M 2j03_S 2jl6_S 2jl8_S 2v47_S 2v49_S 2wdi_S 2wdj_S 2wdl_S 2wdn_S 2wh2_S 2wh4_S 2wrj_S 2wrl_S 2wro_S 2wrr_S ...
Probab=96.39 E-value=0.012 Score=41.41 Aligned_cols=85 Identities=21% Similarity=0.241 Sum_probs=63.5
Q ss_pred ccEEEEEecCCCceEEEeCCC-CCEEEEEeecccccccCCCCChHHHHHHHHHHHHHHHHcCCeEEEEEEEcCC-cCHHH
Q psy13610 25 LPIMNIRVTKNNTILSLSDAK-GVVKLLRSCGMEGFKNARKGTNIAAQAAGITIGKKALEIGVSSVRINVRGLG-PGRLK 102 (123)
Q Consensus 25 ~~i~hI~st~NNTiitlTD~~-G~~l~~~S~G~~GfK~~rK~T~~Aa~~aa~~v~~~a~~~Gi~~i~V~ikG~G-~GR~~ 102 (123)
.+.+-|+-|.++....+.|.. |.+++..|+=-..+| .....||+.+++-++++|++.||..+..-..|+= -||-.
T Consensus 23 rpRL~V~rSnkhiyAQiidd~~~~tlasAsT~e~~~k---~~n~~AA~~vG~llA~ra~~~GI~~vvfDrgg~~yhGrV~ 99 (112)
T 3v2d_S 23 RLRLSVFRSLKHIYAQIIDDEKGVTLVSASSLALKLK---GNKTEVARQVGRALAEKALALGIKQVAFDRGPYKYHGRVK 99 (112)
T ss_dssp CCEEEEEECSSCEEEEEEETTTTEEEEEEETTTTTCC---CCHHHHHHHHHHHHHHHHHTTTCCBCEEECTTSCSCSSTT
T ss_pred CCEEEEEEeCCeEEEEEEecCCCeEEEEEEecchhcc---CCCHHHHHHHHHHHHHHHHHCCCCEEEEecCCCcccHHHH
Confidence 678889999999999998765 557888887766664 4556788999999999999999999876655533 26644
Q ss_pred HH-Hhhhc-Cce
Q psy13610 103 AL-EIGVS-SVR 112 (123)
Q Consensus 103 al-kal~~-g~~ 112 (123)
++ .+++. |++
T Consensus 100 Ala~~are~GL~ 111 (112)
T 3v2d_S 100 ALAEGAREGGLE 111 (112)
T ss_dssp HHHHHHHHTTCB
T ss_pred HHHHHHHHcCCC
Confidence 44 45543 554
No 9
>1vq8_N 50S ribosomal protein L18P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.55.4.1 PDB: 1vq4_N* 1vq5_N* 1vq6_N* 1vq7_N* 1s72_N* 1vq9_N* 1vqk_N* 1vql_N* 1vqm_N* 1vqn_N* 1vqo_N* 1vqp_N* 1yhq_N* 1yi2_N* 1yij_N* 1yit_N* 1yj9_N* 1yjn_N* 1yjw_N* 2otj_N* ...
Probab=95.62 E-value=0.12 Score=39.16 Aligned_cols=92 Identities=15% Similarity=0.122 Sum_probs=65.3
Q ss_pred ccccEEEEEecCCCceEEEe--CCCCC-EEEEEeeccccccc-C--CCCChHHHHHHHHHHHHHHHHcCCeEEEEEEEcC
Q psy13610 23 KNLPIMNIRVTKNNTILSLS--DAKGV-VKLLRSCGMEGFKN-A--RKGTNIAAQAAGITIGKKALEIGVSSVRINVRGL 96 (123)
Q Consensus 23 ~~~~i~hI~st~NNTiitlT--D~~G~-~l~~~S~G~~GfK~-~--rK~T~~Aa~~aa~~v~~~a~~~Gi~~i~V~ikG~ 96 (123)
.+.+.+-|+-|.++.+..+. |..|. +++..|+=-.. |. - ......||..+++-++++|++.||..+.+-..|+
T Consensus 30 ~~rpRL~V~rSnkhIyAQII~~dd~~~~tlasAsT~e~~-k~~~k~~~~N~~AA~~vG~llA~Ral~kGI~~vvfDrgg~ 108 (187)
T 1vq8_N 30 SGKPRLVARKSNKHVRAQLVTLGPNGDDTLASAHSSDLA-EYGWEAPTGNMPSAYLTGLLAGLRAQEAGVEEAVLDIGLN 108 (187)
T ss_dssp TCSCEEEEEECSSCEEEEEEECCTTSCEEEEEEESGGGG-GGTCCSCSSSHHHHHHHHHHHHHHHHHTTCCBCEEECTTS
T ss_pred cCCCEEEEEEeCCcEEEEEEEecCCCCEEEEEEEccchh-ccccccCCCcHHHHHHHHHHHHHHHHHCCCCEEEEcCCCc
Confidence 35688899999999999998 55555 77777775544 31 1 2456778899999999999999999985554443
Q ss_pred C-c--CH-HHHHHhh-hcCceeee
Q psy13610 97 G-P--GR-LKALEIG-VSSVRINV 115 (123)
Q Consensus 97 G-~--GR-~~alkal-~~g~~i~~ 115 (123)
= - || .++++++ -.|+++..
T Consensus 109 ~yh~GgRV~Ala~gAre~GL~fph 132 (187)
T 1vq8_N 109 SPTPGSKVFAIQEGAIDAGLDIPH 132 (187)
T ss_dssp CCCTTCHHHHHHHHHHHTTCBCCC
T ss_pred eeccchHHHHHHHHhhcCCEeccC
Confidence 2 1 67 4455655 45887653
No 10
>1ovy_A 50S ribosomal protein L18; ribosome; NMR {Geobacillus stearothermophilus} SCOP: c.55.4.1
Probab=95.58 E-value=0.042 Score=38.96 Aligned_cols=89 Identities=18% Similarity=0.208 Sum_probs=62.3
Q ss_pred ccccEEEEEecCCCceEEEeCCC-CCEEEEEeecccccccCCCCChHHHHHHHHHHHHHHHHcCCeEEEEEEEcCC-cCH
Q psy13610 23 KNLPIMNIRVTKNNTILSLSDAK-GVVKLLRSCGMEGFKNARKGTNIAAQAAGITIGKKALEIGVSSVRINVRGLG-PGR 100 (123)
Q Consensus 23 ~~~~i~hI~st~NNTiitlTD~~-G~~l~~~S~G~~GfK~~rK~T~~Aa~~aa~~v~~~a~~~Gi~~i~V~ikG~G-~GR 100 (123)
.+.|.+-|+-|.++....+.|.. |.+++..|+=-..++-.......||..+++-++++|++.||..+..-..|+= -||
T Consensus 26 ~~rpRL~V~rSnkhIyAQiidd~~~~tl~sAsT~e~~~~~~~~~n~~AA~~vG~llA~Ral~~GI~~vvfDrgg~~yhgr 105 (120)
T 1ovy_A 26 TERPRLSVFRSNKHIYAQIIDDTKSATIVSASTLDKEFGLDSTNNIEAAKKVGELVAKRALEKGIKQVVFDRGGYLYHGR 105 (120)
T ss_dssp SSCCSEEEEEETTEEEEEEECCSSCCCEEEESTTSTTTCSSCTTSHHHHHHHHHHHHHHHHHHSSSCCCCCSTTCSSCSS
T ss_pred CCCCEEEEEEeCCeEEEEEEEcCCCEEEEEEecCchhhCcCCCCcHHHHHHHHHHHHHHHHHCCCCEEEEecCCccccHH
Confidence 35678889999999999988865 5668887775555662234667888999999999999999998655433322 245
Q ss_pred H-HHHHhhhc-Cc
Q psy13610 101 L-KALEIGVS-SV 111 (123)
Q Consensus 101 ~-~alkal~~-g~ 111 (123)
- +++++++. |+
T Consensus 106 V~ala~~are~GL 118 (120)
T 1ovy_A 106 VKALADAAREAGL 118 (120)
T ss_dssp THHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCC
Confidence 3 34445543 44
No 11
>3j21_O 50S ribosomal protein L18P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=94.33 E-value=0.072 Score=40.95 Aligned_cols=91 Identities=16% Similarity=0.156 Sum_probs=67.4
Q ss_pred cccEEEEEecCCCceEEEeC--CC-CCEEEEEeecccccc-c--CCCCChHHHHHHHHHHHHHHHHcCCeEEEEEEEcCC
Q psy13610 24 NLPIMNIRVTKNNTILSLSD--AK-GVVKLLRSCGMEGFK-N--ARKGTNIAAQAAGITIGKKALEIGVSSVRINVRGLG 97 (123)
Q Consensus 24 ~~~i~hI~st~NNTiitlTD--~~-G~~l~~~S~G~~GfK-~--~rK~T~~Aa~~aa~~v~~~a~~~Gi~~i~V~ikG~G 97 (123)
..+.+-|+-|.++.+..+.| .. |.+++..|+=-...| + .......||..++.-++++|++.||..+.+-..|+=
T Consensus 31 ~kpRL~V~rSnkhIyAQIId~d~~g~~tLasAST~El~lk~g~~~~~~N~~AA~~vG~llA~Ral~kGI~~vvfDrgg~~ 110 (203)
T 3j21_O 31 GKPRLVVRKSLNHHIAQIIVYDPKGDRTLVSAHTRELIRDFGWKGHCGNTPSAYLLGLLIGYKAKQAGIEEAILDIGLHP 110 (203)
T ss_dssp CCCEEEEEECSSCEEEEEEECCTTSCEEEEEECSTTTSSSSSCCSCTTSHHHHHHHHHHSSSSTTSSCCCCCEEECCSSC
T ss_pred CCCEEEEEEeCCeEEEEEEEecCCCCeEEEEEEccchhhhhcccCCCCcHHHHHHHHHHHHHHHHhCCCCEEEEecCcce
Confidence 46788899999999999996 66 567877777655422 2 124556788999999999999999999887776665
Q ss_pred c---CHHH-HHHhh-hcCceee
Q psy13610 98 P---GRLK-ALEIG-VSSVRIN 114 (123)
Q Consensus 98 ~---GR~~-alkal-~~g~~i~ 114 (123)
. ||-. +++++ -.|++|-
T Consensus 111 y~~hgRV~Ala~gAre~GL~iP 132 (203)
T 3j21_O 111 PVRGSSVFAVLKGAVDAGLNVP 132 (203)
T ss_dssp CCTTSHHHHHHHHHHHHTCCCC
T ss_pred eccCcchhhhhhhcccCCeecc
Confidence 5 7744 55555 4588774
No 12
>3bbo_Q Ribosomal protein L18; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=93.64 E-value=0.041 Score=40.96 Aligned_cols=89 Identities=20% Similarity=0.222 Sum_probs=64.0
Q ss_pred cccEEEEEecCCCceEEEeCC-CCCEEEEEeeccccccc----CCCCChHHHHHHHHHHHHHHHHcCCeEEEEEEEcCCc
Q psy13610 24 NLPIMNIRVTKNNTILSLSDA-KGVVKLLRSCGMEGFKN----ARKGTNIAAQAAGITIGKKALEIGVSSVRINVRGLGP 98 (123)
Q Consensus 24 ~~~i~hI~st~NNTiitlTD~-~G~~l~~~S~G~~GfK~----~rK~T~~Aa~~aa~~v~~~a~~~Gi~~i~V~ikG~G~ 98 (123)
+.+.+-|+-|.++....|.|. +|.++...|+=--.+++ .....-.||..+++.++++|++.||+.+..-..|+=+
T Consensus 64 ~rPRL~V~rSnkhIyAQvIdd~~g~tLasASTlek~lk~~l~~g~~~n~~AA~~VG~liAeRA~e~GI~~VvFDRgg~~Y 143 (161)
T 3bbo_Q 64 ERPRLCVFRSNKHLYVQVIDDSKMHTLASASTMQKSISEELDYSSSPTIEVAKKVGEVIASACLEKGITKVAFDRGGYPY 143 (161)
T ss_dssp SCCCCEEEECSSCEEEEEECCTTSCEEEEEEHHHHHHHHCCTTCCSSSHHHHHHHHHHSSSHHHHTSSCCCCCCCSSSCS
T ss_pred CCCEEEEEecCCeEEEEEEECCCCEEEEEEeCCcHHHHhhccccCCCCHHHHHHHHHHHHHHHHHCCCCEEEEeCCCCcc
Confidence 467899999999999998755 56688888874333332 2356778999999999999999999998665444332
Q ss_pred -CHHHHHH-hhhc-Cce
Q psy13610 99 -GRLKALE-IGVS-SVR 112 (123)
Q Consensus 99 -GR~~alk-al~~-g~~ 112 (123)
||-.++- ++|+ |++
T Consensus 144 hGRVkAladaaRe~GL~ 160 (161)
T 3bbo_Q 144 HGRVKALADAAREKGLQ 160 (161)
T ss_dssp SSTTHHHHHHHTTTTCC
T ss_pred hHHHHHHHHHHHHhCCc
Confidence 6755444 5544 554
No 13
>2zjr_L 50S ribosomal protein L18; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.55.4.1 PDB: 1sm1_M* 2zjp_L* 2zjq_L 1nkw_M 3cf5_L* 3dll_L* 3pio_L* 3pip_L* 1nwy_M* 1nwx_M* 1xbp_M* 1pnu_M 1pny_M 1vor_P 1vou_P 1vow_P 1voy_P 1vp0_P
Probab=92.96 E-value=0.068 Score=37.59 Aligned_cols=85 Identities=14% Similarity=0.141 Sum_probs=58.4
Q ss_pred cccEEEEEecCCCceEEEeCCCCC-EEEEEeecccccccCCCCChHHHHHHHHHHHHHHHHcCCeEEEEEEEcCC-cCHH
Q psy13610 24 NLPIMNIRVTKNNTILSLSDAKGV-VKLLRSCGMEGFKNARKGTNIAAQAAGITIGKKALEIGVSSVRINVRGLG-PGRL 101 (123)
Q Consensus 24 ~~~i~hI~st~NNTiitlTD~~G~-~l~~~S~G~~GfK~~rK~T~~Aa~~aa~~v~~~a~~~Gi~~i~V~ikG~G-~GR~ 101 (123)
+.|.+-|+-|.++....+.|..+. +++..|+=- + .......||..+++-++++|++.||..+..-..|+= -||-
T Consensus 25 ~rpRL~V~rSnkhIyAQiidd~~~~tl~sAST~e--l--~~~~n~~AA~~vG~llA~Ral~~GI~~vvfDrgg~~yhgrV 100 (114)
T 2zjr_L 25 GRLRLSVYRSSKHIYAQIIDDSRGQTLAAASSAA--L--KSGNKTDTAAAVGKALAAAAAEKGIKQVVFDRGSYKYHGRV 100 (114)
T ss_dssp CSEEECCCTTSSCCCCCEEETTTTEECCCCCSCS--C--CTTCSSSSHHHHHHHHHHHHHTTCCCCCEECCCSSCSCSHH
T ss_pred CCCEEEEEEeCCeEEEEEEEcCCCEEEEEEEchH--h--cCCCCHHHHHHHHHHHHHHHHHCCCCEEEEecCCccccHHH
Confidence 456788899999998888877665 666555544 3 234556788999999999999999999876655543 3664
Q ss_pred H-HHHhhhc-Cce
Q psy13610 102 K-ALEIGVS-SVR 112 (123)
Q Consensus 102 ~-alkal~~-g~~ 112 (123)
. ++++++. |++
T Consensus 101 ~Ala~~are~GL~ 113 (114)
T 2zjr_L 101 KALADAAREGGLD 113 (114)
T ss_dssp HHHHHHHHHHC--
T ss_pred HHHHHHHHHhCCc
Confidence 4 4445543 654
No 14
>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=86.90 E-value=4.5 Score=32.62 Aligned_cols=98 Identities=17% Similarity=0.191 Sum_probs=66.5
Q ss_pred ccCCee-c-ccccEEEEEecCCCceEEEeCCC--CC-EEEEEeecccc---cccCCCCChHHHHHHHHHHHHHHHHc---
Q psy13610 16 IFDGLK-F-KNLPIMNIRVTKNNTILSLSDAK--GV-VKLLRSCGMEG---FKNARKGTNIAAQAAGITIGKKALEI--- 84 (123)
Q Consensus 16 ~~~g~~-~-~~~~i~hI~st~NNTiitlTD~~--G~-~l~~~S~G~~G---fK~~rK~T~~Aa~~aa~~v~~~a~~~--- 84 (123)
|.+++. | .+.+.+-|+-|..+.+.-+.|.. |. +++..|+=-+. .+++ ....-||+.++.-+++++.+.
T Consensus 37 i~qdknkynt~kpRLvVrrSNk~I~aQII~~~~~gd~tLasAsS~El~kyg~k~g-~tN~aAAy~tGlLlArRal~k~~l 115 (297)
T 2zkr_n 37 VIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCARYAHELPKYGVKVG-LTNYAAAYCTGLLLARRLLNRFGM 115 (297)
T ss_dssp HCCCSTTCSCCSEEEEEEEETTEEEEEEEECCSSSCEEEEEEEGGGGGGTCCCSC-SSSHHHHHHHHHHHHHHHHCCCSC
T ss_pred HhcCCcccCCCCceEEEEEecCcEEEEEEeccCCCCEEEEEeecCcccccccccC-CCcHHHHHHHHHHHHHHHHHhhcc
Confidence 445553 3 25677889999999999999977 54 66666664433 3322 345677899999999999988
Q ss_pred ------------------------CCeEEEEEEEcCCc---CH-HHHHHhh-hcCceee
Q psy13610 85 ------------------------GVSSVRINVRGLGP---GR-LKALEIG-VSSVRIN 114 (123)
Q Consensus 85 ------------------------Gi~~i~V~ikG~G~---GR-~~alkal-~~g~~i~ 114 (123)
|+..+-+=+-|.=. || .++++++ -.|+.|-
T Consensus 116 d~~y~G~~e~~g~~~~ve~~~~~~gi~~vvfDrGl~ryttggRVfa~akGArDgGL~~P 174 (297)
T 2zkr_n 116 DKIYEGQVEVTGDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIP 174 (297)
T ss_dssp CCCCSSCCSSSSCCCCCSSSCSSSCCCBEEEECTTSCCCTTCHHHHHHHHHHHTTCBCC
T ss_pred chhhcCccccccccccccccccCCCceEEEEecCCcccCCCchHHHHHHHHHhcCcccC
Confidence 77877666655444 55 4466654 5578764
No 15
>4a17_M RPL5, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_M 4a1c_M 4a1e_M
Probab=82.13 E-value=3.9 Score=33.02 Aligned_cols=61 Identities=18% Similarity=0.044 Sum_probs=46.5
Q ss_pred cccEEEEEecCCCceEEEeCC--CC-CEEEEEeecccccccC--CCCChHHHHHHHHHHHHHHHHc
Q psy13610 24 NLPIMNIRVTKNNTILSLSDA--KG-VVKLLRSCGMEGFKNA--RKGTNIAAQAAGITIGKKALEI 84 (123)
Q Consensus 24 ~~~i~hI~st~NNTiitlTD~--~G-~~l~~~S~G~~GfK~~--rK~T~~Aa~~aa~~v~~~a~~~ 84 (123)
+.+.+-|+-|..++++-+.|. .| .+++..|+=-....+- ......||..++.-++++|++.
T Consensus 47 pkpRLvV~rSNrhIyAQIIdd~~~Gd~tLaSASS~El~~~g~k~~~~N~~AAy~vG~LiAeRAl~k 112 (301)
T 4a17_M 47 PKYRLVARATNTRIIAQIVYATLKCDRVLCAADSYELKRFGVSTGLASYAAAYATGLLLARRLLKQ 112 (301)
T ss_dssp CCEEEEEEECSSCEEEEEEEECSSCEEEEEEEETTHHHHTTCCSCTTSHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCeEEEEEeecCCCCCEEEEEEeeccchhccccCCCCcHHHHHHHHHHHHHHHHHh
Confidence 567888999999999999986 56 6787777755433332 2345678899999999999987
No 16
>3u5e_D 60S ribosomal protein L5; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_D 4b6a_D 3izc_Q 3izs_Q 3o58_E 3o5h_E 3jyw_E 1s1i_E
Probab=72.87 E-value=16 Score=29.46 Aligned_cols=61 Identities=20% Similarity=0.135 Sum_probs=46.2
Q ss_pred cccEEEEEecCCCceEEEeCC--CC-CEEEEEeecccccccC--CCCChHHHHHHHHHHHHHHHHc
Q psy13610 24 NLPIMNIRVTKNNTILSLSDA--KG-VVKLLRSCGMEGFKNA--RKGTNIAAQAAGITIGKKALEI 84 (123)
Q Consensus 24 ~~~i~hI~st~NNTiitlTD~--~G-~~l~~~S~G~~GfK~~--rK~T~~Aa~~aa~~v~~~a~~~ 84 (123)
..+.+-|+-|..++++-+.|. .| .+++..|+=-..-.+- ......||..++.-++++|++.
T Consensus 47 ~kpRLvV~rSNrhIyAQIIdd~~~Gd~tLaSASS~El~k~g~k~~~~N~~AAy~vG~LiAeRAl~k 112 (297)
T 3u5e_D 47 PKYRLVVRFTNKDIICQIISSTITGDVVLAAAYSHELPRYGITHGLTNWAAAYATGLLIARRTLQK 112 (297)
T ss_dssp CCCEEEEEEETTEEEEEEEECCTTCCEEEEEEEGGGGGGGTCCSCTTSHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCeEEEEEeecCCCCCEEEEEEeecchhhcccCCCCCcHHHHHHHHHHHHHHHHHh
Confidence 567788899999999999987 45 6777777755542232 2345678899999999999987
No 17
>3iz5_Q 60S ribosomal protein L5 (L18P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Q
Probab=61.25 E-value=13 Score=29.96 Aligned_cols=52 Identities=15% Similarity=0.139 Sum_probs=39.1
Q ss_pred cCCCceEEEeCC--CC-CEEEEEeecccccccCC--CCChHHHHHHHHHHHHHHHHc
Q psy13610 33 TKNNTILSLSDA--KG-VVKLLRSCGMEGFKNAR--KGTNIAAQAAGITIGKKALEI 84 (123)
Q Consensus 33 t~NNTiitlTD~--~G-~~l~~~S~G~~GfK~~r--K~T~~Aa~~aa~~v~~~a~~~ 84 (123)
|..++++-|.|. .| .+++..|+=-+...+-+ -...-||+.++.-++++|++.
T Consensus 57 SNrhIyaQII~~~i~GD~tLaSAsS~EL~kyG~k~g~~N~aAAy~tGlLiA~RAl~k 113 (304)
T 3iz5_Q 57 TNKDITAQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLTL 113 (304)
T ss_dssp CSSCCEEEEEEEETTEEEEEEEEETTTGGGGSCCSCTTSHHHHHHHHHHHHHHHHTT
T ss_pred cCCcEEEEEEecCCCCCEEEEEEecCchhhcccCCCCCcHHHHHHHHHHHHHHHHHh
Confidence 778889998886 57 67887877666544422 334568899999999999987
No 18
>3cwf_A Alkaline phosphatase synthesis sensor protein PHO; PAS domain, alkaline phosphatase synthesi protein PHOR, structural genomics, PSI-2; HET: EPE; 2.20A {Bacillus subtilis subsp}
Probab=35.97 E-value=20 Score=23.27 Aligned_cols=20 Identities=20% Similarity=0.074 Sum_probs=17.0
Q ss_pred cCCCceEEEeCCCCCEEEEE
Q psy13610 33 TKNNTILSLSDAKGVVKLLR 52 (123)
Q Consensus 33 t~NNTiitlTD~~G~~l~~~ 52 (123)
...|+-|+++|.+|+|++.+
T Consensus 45 ~~~~~rItiiD~~G~Vl~dS 64 (122)
T 3cwf_A 45 GALDVSASVIDTDGKVLYGS 64 (122)
T ss_dssp HHHTCEEEEEETTSCEEEET
T ss_pred hhcCcEEEEECCCCcEEEeC
Confidence 34578999999999999976
No 19
>3g9k_S Capsule biosynthesis protein CAPD; CAPD protein, the great lakes regional C excellence, GLRCE, capsule biogenesis/degradation; HET: GLU; 1.79A {Bacillus anthracis} PDB: 3ga9_S*
Probab=35.88 E-value=35 Score=24.84 Aligned_cols=23 Identities=22% Similarity=0.120 Sum_probs=19.2
Q ss_pred ceEEEeCCCCCEEEEEeeccccc
Q psy13610 37 TILSLSDAKGVVKLLRSCGMEGF 59 (123)
Q Consensus 37 TiitlTD~~G~~l~~~S~G~~Gf 59 (123)
|++++.|.+||.+..+++-...|
T Consensus 2 th~svvD~~GnaVS~T~Si~~~F 24 (177)
T 3g9k_S 2 THFVIIDRDGTVVSSTNTLSNFF 24 (177)
T ss_dssp EEEEEECTTCCEEEEEEECSSTT
T ss_pred eEEEEECCCCCEEEEEccCCCCC
Confidence 78999999999999988765444
No 20
>3qd7_X Uncharacterized protein YDAL; alpha/beta/alpha fold, endonuclease, hydrolase; 2.30A {Escherichia coli}
Probab=34.31 E-value=1e+02 Score=21.43 Aligned_cols=40 Identities=15% Similarity=0.165 Sum_probs=29.9
Q ss_pred CChHHHHHHHHHHHHHHHHcCCeEEEEEEEcCCcC---HHHHHH
Q psy13610 65 GTNIAAQAAGITIGKKALEIGVSSVRINVRGLGPG---RLKALE 105 (123)
Q Consensus 65 ~T~~Aa~~aa~~v~~~a~~~Gi~~i~V~ikG~G~G---R~~alk 105 (123)
.+..-|..+-++....|...|++.|. +|.|-|.| ...+||
T Consensus 55 ~~~~EA~~~L~~fL~~a~~~g~r~V~-IIHGKG~gs~~~~~vLk 97 (137)
T 3qd7_X 55 QPVEECRKMVFSFIQQALADGLRNVL-IIHGKGRDDKSHANIVR 97 (137)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSEEE-EECCCCSSTTSHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCEEE-EEECCCCCCCCchHHHH
Confidence 35566777778888899999999887 57888876 334666
No 21
>2r48_A Phosphotransferase system (PTS) mannose-specific iibca component; PTS system, fructose specific IIB PFAM02379, PSI-2, MCSG; 1.80A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=33.99 E-value=55 Score=22.14 Aligned_cols=27 Identities=26% Similarity=0.416 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEEEEEEc
Q psy13610 68 IAAQAAGITIGKKALEIGVSSVRINVRG 95 (123)
Q Consensus 68 ~Aa~~aa~~v~~~a~~~Gi~~i~V~ikG 95 (123)
-..++|++.+.+.|+++|+. |.|..+|
T Consensus 16 AhTymAaeaL~~aA~~~G~~-ikVEtqG 42 (106)
T 2r48_A 16 AHTYMAAENLQKAADRLGVS-IKVETQG 42 (106)
T ss_dssp HHHHHHHHHHHHHHHHHTCE-EEEEEEE
T ss_pred HHHHHHHHHHHHHHHHCCCe-EEEEecC
Confidence 35678889999999999987 8888888
No 22
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=33.96 E-value=60 Score=21.93 Aligned_cols=27 Identities=19% Similarity=0.320 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHcCCeEEEEEEEcC
Q psy13610 69 AAQAAGITIGKKALEIGVSSVRINVRGL 96 (123)
Q Consensus 69 Aa~~aa~~v~~~a~~~Gi~~i~V~ikG~ 96 (123)
..+.|++.+-+.|+++|+. +.|..+|.
T Consensus 17 hTymAAeaLekaA~~~G~~-ikVEtqgs 43 (106)
T 2m1z_A 17 HTYMAAQALKKGAKKMGNL-IKVETQGA 43 (106)
T ss_dssp HHHHHHHHHHHHHHHHTCE-EEEEEEET
T ss_pred HHHHHHHHHHHHHHHCCCE-EEEEEecC
Confidence 4577889898999999996 89999994
No 23
>2r4q_A Phosphotransferase system (PTS) fructose-specific iiabc component; fructose specific IIB subunit, PF structural genomics, PSI-2; HET: MSE; 1.60A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=32.77 E-value=56 Score=22.11 Aligned_cols=26 Identities=27% Similarity=0.461 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHcCCeEEEEEEEc
Q psy13610 69 AAQAAGITIGKKALEIGVSSVRINVRG 95 (123)
Q Consensus 69 Aa~~aa~~v~~~a~~~Gi~~i~V~ikG 95 (123)
..++|++.+.+.|+++|+. +.|..+|
T Consensus 17 hTymAaeaL~~aA~~~G~~-ikVEtqG 42 (106)
T 2r4q_A 17 HTFMAADALKEKAKELGVE-IKVETNG 42 (106)
T ss_dssp CHHHHHHHHHHHHHHHTCC-EEEEEEE
T ss_pred HHHHHHHHHHHHHHHCCCe-EEEEecC
Confidence 3567888888899999988 8888888
No 24
>4h8a_A Ureidoglycolate dehydrogenase; rossmann fold, oxidoreductase; HET: NAI; 1.64A {Escherichia coli} PDB: 4fju_A* 4fjs_A* 1xrh_A
Probab=32.10 E-value=1.7e+02 Score=23.39 Aligned_cols=69 Identities=16% Similarity=0.058 Sum_probs=51.2
Q ss_pred CCCCCEEE-EEeecccccccCCCCChHHHHHHHHHHHHHHHHcCCeEEEEEEEc-CCcCHHHHHHhhhcCc
Q psy13610 43 DAKGVVKL-LRSCGMEGFKNARKGTNIAAQAAGITIGKKALEIGVSSVRINVRG-LGPGRLKALEIGVSSV 111 (123)
Q Consensus 43 D~~G~~l~-~~S~G~~GfK~~rK~T~~Aa~~aa~~v~~~a~~~Gi~~i~V~ikG-~G~GR~~alkal~~g~ 111 (123)
|++.++.. .....+.-+.+.+--.+.++..|-+.+.++|++.||-.+-|+=.. +|..-..+.++...|+
T Consensus 64 ~~~a~p~v~~~~~a~~~vDg~~g~G~~~~~~am~~aiekAk~~Gig~v~vrns~H~G~~g~y~~~aa~~Gl 134 (339)
T 4h8a_A 64 NREPEFRLEETGPCSAILHADNAAGQVAAKMGMEHAIKTAQQNGVAVVGISRMGHSGAISYFVQQAARAGF 134 (339)
T ss_dssp CSSCCCEEEEEETTEEEEECTTCCHHHHHHHHHHHHHHHHHHHSEEEEEEEEECCCCCTHHHHHHHHHTTS
T ss_pred CCCCCeEEEEccCcEEEEECCCCchHHHHHHHHHHHHHHHHHhCEEEEEEecCCCcchhHHHHHHHHHCCC
Confidence 44444433 334444556777777899999999999999999999887766554 8888888888887775
No 25
>1nxu_A Hypothetical oxidoreductase YIAK; hypothetical protein, structural genomics, PSI, protein structure initiative; 1.80A {Escherichia coli} SCOP: c.122.1.1 PDB: 1s20_A*
Probab=31.71 E-value=1.7e+02 Score=23.26 Aligned_cols=69 Identities=13% Similarity=0.034 Sum_probs=51.5
Q ss_pred CCCCCEEEE-EeecccccccCCCCChHHHHHHHHHHHHHHHHcCCeEEEEEEEc-CCcCHHHHHHhhhcCc
Q psy13610 43 DAKGVVKLL-RSCGMEGFKNARKGTNIAAQAAGITIGKKALEIGVSSVRINVRG-LGPGRLKALEIGVSSV 111 (123)
Q Consensus 43 D~~G~~l~~-~S~G~~GfK~~rK~T~~Aa~~aa~~v~~~a~~~Gi~~i~V~ikG-~G~GR~~alkal~~g~ 111 (123)
|++.++... .+....-+.+.+--.+.++..|-+.+.++|++.||-.+-|+=.. +|..-..+.++...|+
T Consensus 62 ~~~a~p~v~~~~~a~~~vDg~~g~G~~~~~~am~~aiekAk~~Gi~~v~vrns~H~G~~g~y~~~aa~~Gl 132 (333)
T 1nxu_A 62 IPDAQPKRITSLGAIEQWDAQRSIGNLTAKKMMDRAIELAADHGIGLVALRNANHWMRGGSYGWQAAEKGY 132 (333)
T ss_dssp CTTCCCEEEEEETTEEEEECTTCCHHHHHHHHHHHHHHHHHHHSEEEEEEEEECCCSCTHHHHHHHHHTTC
T ss_pred CCCCCcEEEEcCCcEEEEECCCCcHHHHHHHHHHHHHHHHHHcCEEEEEEeCCCCCCccHHHHHHHHHCCC
Confidence 444554333 34444456777778899999999999999999999887776555 8887778888888876
No 26
>2kyr_A Fructose-like phosphotransferase enzyme IIB compo; ALP protein, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=31.66 E-value=65 Score=21.96 Aligned_cols=27 Identities=26% Similarity=0.390 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHcCCeEEEEEEEcC
Q psy13610 69 AAQAAGITIGKKALEIGVSSVRINVRGL 96 (123)
Q Consensus 69 Aa~~aa~~v~~~a~~~Gi~~i~V~ikG~ 96 (123)
..+.|++.+-+.|+++|+. +.|..+|.
T Consensus 20 HTyMAAeaL~~aA~~~G~~-ikVEtqGs 46 (111)
T 2kyr_A 20 HTFMAAQALEEAAVEAGYE-VKIETQGA 46 (111)
T ss_dssp HHHHHHHHHHHHHHHTSSE-EEEEEEET
T ss_pred HHHHHHHHHHHHHHHCCCe-EEEEecCC
Confidence 5578889999999999987 88888883
No 27
>1wtj_A Ureidoglycolate dehydrogenase; NADPH dependent enzyme, oxidoreductase; 1.55A {Pseudomonas syringae PV} PDB: 2cwf_A* 2cwh_A*
Probab=31.34 E-value=1.7e+02 Score=23.40 Aligned_cols=69 Identities=16% Similarity=0.006 Sum_probs=52.1
Q ss_pred CCCCCEE-EEEeecccccccCCCCChHHHHHHHHHHHHHHHHcCCeEEEEEEEc-CCcCHHHHHHhhhcCc
Q psy13610 43 DAKGVVK-LLRSCGMEGFKNARKGTNIAAQAAGITIGKKALEIGVSSVRINVRG-LGPGRLKALEIGVSSV 111 (123)
Q Consensus 43 D~~G~~l-~~~S~G~~GfK~~rK~T~~Aa~~aa~~v~~~a~~~Gi~~i~V~ikG-~G~GR~~alkal~~g~ 111 (123)
|++.++. ...+....-+.+.+--.+.++..|-+.+.++|++.||-.+-|+=.. +|..-..+.++...|+
T Consensus 72 ~~~a~p~v~~~~~a~~~vDg~~g~G~~~~~~am~~aiekAk~~Gi~~v~vrns~H~G~~g~y~~~aa~~Gl 142 (343)
T 1wtj_A 72 DGKAVPVVEDVGAAFVRVDACNGFAQPALAAARSLLIDKARSAGVAILAIRGSHHFAALWPDVEPFAEQGL 142 (343)
T ss_dssp CTTCCCEEEEEETTEEEEECTTSBHHHHHHHHHHHHHHHHHHHSEEEEEEEEEECCSCSHHHHHHHHHTTC
T ss_pred CCCCCeEEEEcCCcEEEEECCCCcHHHHHHHHHHHHHHHHHHcCEEEEEEeCCCCCCchHHHHHHHHHCCC
Confidence 4455543 3344444557777778899999999999999999999887776554 8888888888888876
No 28
>1v9n_A Malate dehydrogenase; riken structural genomics/proteomics initiati structural genomics, oxidoreductase; HET: NDP; 2.10A {Pyrococcus horikoshii}
Probab=31.07 E-value=1.6e+02 Score=23.67 Aligned_cols=69 Identities=12% Similarity=0.027 Sum_probs=51.7
Q ss_pred CCCCCEEE-EEeecccccccCCCCChHHHHHHHHHHHHHHHHcCCeEEEEEEEc-CCcCHHHHHHhhhcCc
Q psy13610 43 DAKGVVKL-LRSCGMEGFKNARKGTNIAAQAAGITIGKKALEIGVSSVRINVRG-LGPGRLKALEIGVSSV 111 (123)
Q Consensus 43 D~~G~~l~-~~S~G~~GfK~~rK~T~~Aa~~aa~~v~~~a~~~Gi~~i~V~ikG-~G~GR~~alkal~~g~ 111 (123)
|++.++.. ..+....-+.+.+--.+.++..|-+.+.++|++.||-.+-|+=.. +|..-..+.++...|+
T Consensus 73 ~~~a~p~v~~~~~a~~~vDg~~g~G~~~~~~am~~aiekAk~~Gi~~v~vrns~H~G~~g~y~~~aa~~Gl 143 (360)
T 1v9n_A 73 NLHPKIRVIREGPSYALIDGDEGLGQVVGYRSMKLAIKKAKDTGIGIVIARNSNHYGIAGYYALMAAEEGM 143 (360)
T ss_dssp BSSCCCEEEEEETTEEEEECTTBCHHHHHHHHHHHHHHHHHHHSEEEEEEEEECCCSCTHHHHHHHHTTTS
T ss_pred CCCCCeEEEEeCCcEEEEECCCCcHHHHHHHHHHHHHHHHHHcCEEEEEEeCCCCcchHHHHHHHHHHCCC
Confidence 34444433 334444456677777899999999999999999999887776554 8888888888888887
No 29
>2fhm_A Probable acylphosphatase; hydrolase; NMR {Bacillus subtilis} PDB: 2hlt_A 2hlu_A 3br8_A
Probab=30.76 E-value=92 Score=19.84 Aligned_cols=36 Identities=28% Similarity=0.242 Sum_probs=20.4
Q ss_pred eEEEEEEEc--CCcC-HHHHHH-hhhcCceeeeeccCCCC
Q psy13610 87 SSVRINVRG--LGPG-RLKALE-IGVSSVRINVRGLGPGR 122 (123)
Q Consensus 87 ~~i~V~ikG--~G~G-R~~alk-al~~g~~i~~~~~~~~~ 122 (123)
..+++.|+| -|.| |..+.+ |.+-|+.=.|||+..|+
T Consensus 2 ~~~~~~v~G~VQGVGFR~~v~~~A~~lgl~G~V~N~~dG~ 41 (91)
T 2fhm_A 2 LQYRIIVDGRVQGVGFRYFVQMEADKRKLAGWVKNRDDGR 41 (91)
T ss_dssp EEEEEEEEEECCSSCHHHHHHHHHHHTTCEEEEEECTTSC
T ss_pred EEEEEEEEEeECCcCHHHHHHHHHHHcCCeEEEEECCCCc
Confidence 345555555 2322 455555 44557777777777664
No 30
>1w2i_A Acylphosphatase; hydrolase, thermophilic, stability, amyloid; 1.5A {Pyrococcus horikoshii} SCOP: d.58.10.1 PDB: 1v3z_A 2w4d_A
Probab=30.64 E-value=77 Score=20.30 Aligned_cols=37 Identities=24% Similarity=0.300 Sum_probs=23.9
Q ss_pred CeEEEEEEEc--CCcC-HHHHHH-hhhcCceeeeeccCCCC
Q psy13610 86 VSSVRINVRG--LGPG-RLKALE-IGVSSVRINVRGLGPGR 122 (123)
Q Consensus 86 i~~i~V~ikG--~G~G-R~~alk-al~~g~~i~~~~~~~~~ 122 (123)
+..+++.|+| -|.| |..+.+ |.+-|+.=.|||+..|+
T Consensus 3 m~~~~~~V~G~VQGVGFR~~v~~~A~~lgL~G~V~N~~dG~ 43 (91)
T 1w2i_A 3 IVRAHLKIYGRVQGVGFRWSMQREARKLGVNGWVRNLPDGS 43 (91)
T ss_dssp EEEEEEEEEEECSSSSHHHHHHHHHHHHTCEEEEEECTTSC
T ss_pred cEEEEEEEEEEECCcCHHHHHHHHHHHcCCeEEEEECCCCC
Confidence 4566777777 3333 555555 45668888888887774
No 31
>3trg_A Acylphosphatase; fatty acid and phospholipid metabolism, hydrolase; 1.60A {Coxiella burnetii}
Probab=30.21 E-value=67 Score=21.02 Aligned_cols=38 Identities=18% Similarity=0.182 Sum_probs=27.3
Q ss_pred CCeEEEEEEEc--CCcC-HHHHHH-hhhcCceeeeeccCCCC
Q psy13610 85 GVSSVRINVRG--LGPG-RLKALE-IGVSSVRINVRGLGPGR 122 (123)
Q Consensus 85 Gi~~i~V~ikG--~G~G-R~~alk-al~~g~~i~~~~~~~~~ 122 (123)
.+..+++.|+| =|.| |..+.+ |.+-|+.=-|||++.|+
T Consensus 10 ~~~~~~i~V~G~VQGVGFR~~v~~~A~~lgL~G~VrN~~dG~ 51 (98)
T 3trg_A 10 NETCIHVTVSGKVQGVFFRESVRKKAEELQLTGWVKNLSHGD 51 (98)
T ss_dssp HEEEEEEEEEEECSSSCHHHHHHHHHHHTTCEEEEEECTTSC
T ss_pred hhEEEEEEEEEeECCCCccHHHHHHHHHcCCeEEEEECCCCE
Confidence 46778888888 3444 555555 56779988899998875
No 32
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=29.92 E-value=1.2e+02 Score=19.74 Aligned_cols=30 Identities=23% Similarity=0.326 Sum_probs=21.3
Q ss_pred CCChHHHHHHH-HHHHHHHHHcCCeEEEEEE
Q psy13610 64 KGTNIAAQAAG-ITIGKKALEIGVSSVRINV 93 (123)
Q Consensus 64 K~T~~Aa~~aa-~~v~~~a~~~Gi~~i~V~i 93 (123)
..|...|...| ....+.+.++|++.|.|+-
T Consensus 43 ~~tn~~aEl~A~~~aL~~a~~~~~~~v~i~t 73 (141)
T 3hst_B 43 RATNNVAEYRGLIAGLDDAVKLGATEAAVLM 73 (141)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHTCSEEEEEE
T ss_pred CCchHHHHHHHHHHHHHHHHHCCCceEEEEe
Confidence 45666665444 6677888899999877763
No 33
>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris}
Probab=29.34 E-value=2.2e+02 Score=23.26 Aligned_cols=55 Identities=15% Similarity=0.125 Sum_probs=40.2
Q ss_pred cccccCCCCChHHHHHHHHHHHHHHHHcCCeEEEEEEEcCCcCHHH-HHH-hhhcCceeeeec
Q psy13610 57 EGFKNARKGTNIAAQAAGITIGKKALEIGVSSVRINVRGLGPGRLK-ALE-IGVSSVRINVRG 117 (123)
Q Consensus 57 ~GfK~~rK~T~~Aa~~aa~~v~~~a~~~Gi~~i~V~ikG~G~GR~~-alk-al~~g~~i~~~~ 117 (123)
+..=|+|+.|+|.-+. ++++++.+.+.|+ ++|.|.-.|=+. |-+ ++..| .|.|=+
T Consensus 130 vAIVGsR~~s~yG~~~-a~~l~~~La~~g~----~VVSGlA~GID~~AH~~AL~~g-TIaVLg 186 (382)
T 3maj_A 130 IAIVGSRNASGAGLKF-AGQLAADLGAAGF----VVISGLARGIDQAAHRASLSSG-TVAVLA 186 (382)
T ss_dssp EEEECCSSCCHHHHHH-HHHHHHHHHHHTC----EEEECCCTTHHHHHHHHHTTTC-EEEECS
T ss_pred EEEEeCCCCCHHHHHH-HHHHHHHHHHCCc----EEEeCCccCHHHHHHHHHHhCC-eEEEEC
Confidence 4455789999998764 4778888888888 478998888776 444 57778 666544
No 34
>1z2i_A Malate dehydrogenase; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; HET: NAD; 2.20A {Agrobacterium tumefaciens}
Probab=27.96 E-value=1.7e+02 Score=23.50 Aligned_cols=56 Identities=23% Similarity=0.188 Sum_probs=45.0
Q ss_pred ccccccCCCCChHHHHHHHHHHHHHHHHcCCeEEEEEEEc-CCcCHHHHHHhhhcCc
Q psy13610 56 MEGFKNARKGTNIAAQAAGITIGKKALEIGVSSVRINVRG-LGPGRLKALEIGVSSV 111 (123)
Q Consensus 56 ~~GfK~~rK~T~~Aa~~aa~~v~~~a~~~Gi~~i~V~ikG-~G~GR~~alkal~~g~ 111 (123)
+.-+.+.+--.+.++..|-+.+.++|++.||-.+-|+=.. +|..-..+.++...|+
T Consensus 85 ~~~vDg~~g~G~~~~~~am~~aiekAk~~Gi~~v~vrns~H~G~~g~y~~~aa~~Gl 141 (358)
T 1z2i_A 85 VETIDADHAHGARATYAAMENAMALAEKFGIGAVAIRNSSHFGPAGAYALEAARQGY 141 (358)
T ss_dssp EEEEECSSCCHHHHHHHHHHHHHHHHHHHSEEEEEEEEECCCSCTHHHHHHHHHTTS
T ss_pred EEEEECCCCcHHHHHHHHHHHHHHHHHHcCEEEEEEeCCCCcchHHHHHHHHHHCCC
Confidence 3345566667789999999999999999999877776554 8888888888888877
No 35
>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1
Probab=27.91 E-value=32 Score=27.73 Aligned_cols=56 Identities=14% Similarity=0.232 Sum_probs=36.3
Q ss_pred CChHHHHHHHHHHHHHHHHc-CCeEEEEEEEcCCc-CHHHHHHhhhcCceeeeeccCC
Q psy13610 65 GTNIAAQAAGITIGKKALEI-GVSSVRINVRGLGP-GRLKALEIGVSSVRINVRGLGP 120 (123)
Q Consensus 65 ~T~~Aa~~aa~~v~~~a~~~-Gi~~i~V~ikG~G~-GR~~alkal~~g~~i~~~~~~~ 120 (123)
.|.|....+++.++++.... .+..-.|.|-|+|. |+..|-++...|.++.+=++.|
T Consensus 149 aTg~GV~~~~~~~~~~~~G~~~L~GktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~~ 206 (364)
T 1leh_A 149 VTAYGVYRGMKAAAKEAFGSDSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNK 206 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred chhhHHHHHHHHHHHhhccccCCCcCEEEEECchHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 45555555555444433211 35667789999995 8888877888899987765443
No 36
>1ulr_A Putative acylphosphatase; hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: d.58.10.1
Probab=27.91 E-value=96 Score=19.65 Aligned_cols=35 Identities=26% Similarity=0.205 Sum_probs=20.1
Q ss_pred EEEEEEEc--CCcC-HHHHHH-hhhcCceeeeeccCCCC
Q psy13610 88 SVRINVRG--LGPG-RLKALE-IGVSSVRINVRGLGPGR 122 (123)
Q Consensus 88 ~i~V~ikG--~G~G-R~~alk-al~~g~~i~~~~~~~~~ 122 (123)
.+++.++| -|.| |..+.+ |.+-|+.=.|||+..|+
T Consensus 3 ~~~~~v~G~VQGVGFR~~v~~~A~~lgl~G~V~N~~dG~ 41 (88)
T 1ulr_A 3 RLVALVKGRVQGVGYRAFAQKKALELGLSGYAENLPDGR 41 (88)
T ss_dssp EEEEEEEEECSSSSHHHHHHHHHHHTTCEEEEEECTTSC
T ss_pred EEEEEEEEeECCcCHHHHHHHHHHHcCCeEEEEECCCCc
Confidence 45555555 2333 445555 44557777777777664
No 37
>1vbi_A Type 2 malate/lactate dehydrogenase; malate dehydrogenase, NAD(P) binding protein, thermus thermo HB8, structural genomics; HET: NAD; 1.80A {Thermus thermophilus} PDB: 1x0a_A
Probab=27.89 E-value=1.5e+02 Score=23.61 Aligned_cols=68 Identities=13% Similarity=0.016 Sum_probs=49.8
Q ss_pred CCCCEEEEEeecccccccCCCCChHHHHHHHHHHHHHHHHcCCeEEEEEEEc-CCcCHHHHHHhhhcCc
Q psy13610 44 AKGVVKLLRSCGMEGFKNARKGTNIAAQAAGITIGKKALEIGVSSVRINVRG-LGPGRLKALEIGVSSV 111 (123)
Q Consensus 44 ~~G~~l~~~S~G~~GfK~~rK~T~~Aa~~aa~~v~~~a~~~Gi~~i~V~ikG-~G~GR~~alkal~~g~ 111 (123)
++.++.......+.-+.+.+--.+.++..|-+.+.++|++.||-.+-|+=.. +|..-..+.++...|+
T Consensus 63 ~~a~p~v~~~~a~~~vDg~~g~G~~~~~~am~~aiekAk~~Gi~~v~vrns~H~G~~g~y~~~aa~~Gl 131 (344)
T 1vbi_A 63 PSPTLPLEERGPVALLDGEHGFGPRVALKAVEAAQSLARRHGLGAVGVRRSTHFGMAGLYAEKLAREGF 131 (344)
T ss_dssp SSCCCCEEEETTEEEEECTTBCHHHHHHHHHHHHHHHHHHHSEEEEEEEEECCCCCHHHHHHHHHHTTC
T ss_pred CCCCcEEEecCcEEEEECCCCcHHHHHHHHHHHHHHHHHHcCEEEEEEeCCCCcchHHHHHHHHHHCCC
Confidence 3444333323444456666677789999999999999999999877776554 8887778888888876
No 38
>2vh7_A Acylphosphatase-1; hydrolase, acetylation; 1.45A {Homo sapiens} PDB: 2w4c_A 2w4p_A 2k7k_A 2k7j_A 2acy_A
Probab=27.70 E-value=98 Score=20.07 Aligned_cols=38 Identities=18% Similarity=0.032 Sum_probs=27.4
Q ss_pred CCeEEEEEEEc--CCcC-HHHHHH-hhhcCceeeeeccCCCC
Q psy13610 85 GVSSVRINVRG--LGPG-RLKALE-IGVSSVRINVRGLGPGR 122 (123)
Q Consensus 85 Gi~~i~V~ikG--~G~G-R~~alk-al~~g~~i~~~~~~~~~ 122 (123)
.+..+++.|+| =|.| |..+.+ |.+-|+.=-|||+..|+
T Consensus 6 ~m~~~~i~V~G~VQGVGFR~~v~~~A~~lgL~G~V~N~~dG~ 47 (99)
T 2vh7_A 6 TLISVDYEIFGKVQGVFFRKHTQAEGKKLGLVGWVQNTDRGT 47 (99)
T ss_dssp CEEEEEEEEEEECSSSCHHHHHHHHHHHTTCEEEEEECTTSC
T ss_pred ceEEEEEEEEEeeCCcChHHHHHHHHHHcCCcEEEEECCCCC
Confidence 46778888888 3443 555666 55778888899998885
No 39
>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A
Probab=27.64 E-value=42 Score=27.92 Aligned_cols=49 Identities=20% Similarity=0.233 Sum_probs=33.7
Q ss_pred CCChHHHHHHHHHHHHHHHHcCCeEEEEEEEcCCc-CHHHHHHhhhcCcee
Q psy13610 64 KGTNIAAQAAGITIGKKALEIGVSSVRINVRGLGP-GRLKALEIGVSSVRI 113 (123)
Q Consensus 64 K~T~~Aa~~aa~~v~~~a~~~Gi~~i~V~ikG~G~-GR~~alkal~~g~~i 113 (123)
..|-|.....++.+.++. ...++..+|.|.|+|- |..++.++...|.++
T Consensus 198 ~aTg~Gv~~~~~~~~~~~-g~~l~g~~vaVqG~GnVG~~aa~~l~e~GakV 247 (424)
T 3k92_A 198 TATAQGVTICIEEAVKKK-GIKLQNARIIIQGFGNAGSFLAKFMHDAGAKV 247 (424)
T ss_dssp THHHHHHHHHHHHHHHHT-TCCGGGCEEEEECCSHHHHHHHHHHHHHTCEE
T ss_pred ccHHHHHHHHHHHHHHHc-CCCcccCEEEEECCCHHHHHHHHHHHHCCCEE
Confidence 556666666655554432 2346778999999995 777777777778886
No 40
>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1
Probab=27.20 E-value=54 Score=27.15 Aligned_cols=50 Identities=20% Similarity=0.289 Sum_probs=34.5
Q ss_pred CCChHHHHHHHHHHHHHHHHcCCeEEEEEEEcCCc-CHHHHHHhhhcCceee
Q psy13610 64 KGTNIAAQAAGITIGKKALEIGVSSVRINVRGLGP-GRLKALEIGVSSVRIN 114 (123)
Q Consensus 64 K~T~~Aa~~aa~~v~~~a~~~Gi~~i~V~ikG~G~-GR~~alkal~~g~~i~ 114 (123)
..|-|.....++.+.+.. ...++...|.|.|+|- |..++-++...|.++-
T Consensus 187 ~aTg~Gv~~~~~~~~~~~-g~~l~gk~vaVqG~GnVG~~aa~~L~e~GakVV 237 (421)
T 1v9l_A 187 YATGFGVAVATREMAKKL-WGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVI 237 (421)
T ss_dssp GHHHHHHHHHHHHHHHHH-HSCCTTCEEEEECCSHHHHHHHHHHHTTTCEEE
T ss_pred cchHHHHHHHHHHHHHhc-CCCcCCCEEEEECcCHHHHHHHHHHHHCCCEEE
Confidence 456666666666555542 3356668899999995 7777766667787764
No 41
>2g8y_A Malate/L-lactate dehydrogenases; NAD, E.coli, structural GENO PSI, protein structure initiative, midwest center for struc genomics, MCSG; HET: NAD 1PE; 2.15A {Escherichia coli}
Probab=27.07 E-value=1.8e+02 Score=23.72 Aligned_cols=69 Identities=16% Similarity=0.066 Sum_probs=51.7
Q ss_pred CCCCCEEE-EEeecccccccCCCCChHHHHHHHHHHHHHHHHcCCeEEEEEEEc-CCcCHHHHHHhhhcCc
Q psy13610 43 DAKGVVKL-LRSCGMEGFKNARKGTNIAAQAAGITIGKKALEIGVSSVRINVRG-LGPGRLKALEIGVSSV 111 (123)
Q Consensus 43 D~~G~~l~-~~S~G~~GfK~~rK~T~~Aa~~aa~~v~~~a~~~Gi~~i~V~ikG-~G~GR~~alkal~~g~ 111 (123)
|++.++.. .......-+.+.+--.+.++..|-+.+.++|++.||-.+-|+=.. +|..-..+.++...|+
T Consensus 88 ~~~a~p~v~~~~~a~~~vDg~~g~G~~~~~~am~~aiekAk~~Gig~v~vrns~H~G~~g~y~~~aa~~Gl 158 (385)
T 2g8y_A 88 QINHHAKTVKEAGAAVTLDGDRAFGQVAAHEAMALGIEKAHQHGIAAVALHNSHHIGRIGYWAEQCAAAGF 158 (385)
T ss_dssp BTTCCCEEEEEETTEEEEECTTBCHHHHHHHHHHHHHHHHHHHSEEEEEEEEEECCCCHHHHHHHHHHTTC
T ss_pred CCCCCeEEEEcCCcEEEEECCCCcHHHHHHHHHHHHHHHHHHcCEEEEEEeCCCCcchHHHHHHHHHHCCC
Confidence 44555433 334444456777778899999999999999999999877776544 8887788888888877
No 42
>3ur8_A Glucan endo-1,3-beta-D-glucosidase; glucoside hydrolase, GH17 family, pathogenesis-related class protein (PR-2), TIM barrel; 1.26A {Solanum tuberosum} PDB: 3ur7_A
Probab=27.01 E-value=83 Score=25.08 Aligned_cols=36 Identities=14% Similarity=0.002 Sum_probs=25.3
Q ss_pred HHHHHHHHHcCCeEEEEEEEcCCcCHHHHHHhhh-cCceeee
Q psy13610 75 ITIGKKALEIGVSSVRINVRGLGPGRLKALEIGV-SSVRINV 115 (123)
Q Consensus 75 ~~v~~~a~~~Gi~~i~V~ikG~G~GR~~alkal~-~g~~i~~ 115 (123)
+++++..+..||+.|+|+ +.. +.+|+|++ +|+++.+
T Consensus 18 ~~Vv~llks~gi~~VRlY--~~D---~~vL~Al~~sgi~V~l 54 (323)
T 3ur8_A 18 QDVIKLYNANNIKKMRIY--YPH---TNVFNALKGSNIEIIL 54 (323)
T ss_dssp HHHHHHHHHTTCCEEEES--SCC---HHHHHHHTTCCCEEEE
T ss_pred HHHHHHHHhCCCCeEEec--CCC---HHHHHHHHhcCCeEEE
Confidence 445666778899977776 444 57888874 6888654
No 43
>3i0p_A Malate dehydrogenase; araerobic parasitic protozoan, amoebic dysentery, ssgcid, NI infectious disease, structural genomics; HET: NAD; 2.60A {Entamoeba histolytica}
Probab=26.66 E-value=1.8e+02 Score=23.45 Aligned_cols=69 Identities=9% Similarity=0.006 Sum_probs=50.0
Q ss_pred CCCCCEEE-EEeecccccccCCCCChHHHHHHHHHHHHHHHHcCCeEEEEEEEc-CCcCHHHHHHhhhcCc
Q psy13610 43 DAKGVVKL-LRSCGMEGFKNARKGTNIAAQAAGITIGKKALEIGVSSVRINVRG-LGPGRLKALEIGVSSV 111 (123)
Q Consensus 43 D~~G~~l~-~~S~G~~GfK~~rK~T~~Aa~~aa~~v~~~a~~~Gi~~i~V~ikG-~G~GR~~alkal~~g~ 111 (123)
|++.++.. .....+.-+.+.+--.+.++..|-+.+.++|++.||-.+-|+=.. +|..-..+.++...|+
T Consensus 69 ~~~a~p~v~~~~~a~~~vDg~~g~G~~~~~~am~~aiekAk~~Gig~v~vrns~H~G~~g~y~~~aa~~Gl 139 (365)
T 3i0p_A 69 NPTAKPSIIRETSTTCVLDGNNGFGHVNGTIGMKMAIEKAKKYGMGMVVVRNSTHFGIAGYYSLLAAQEGC 139 (365)
T ss_dssp CTTCCCEEEEECSSEEEEECTTCCHHHHHHHHHHHHHHHHHHHSEEEEEEEEECCCSCHHHHHHHHHHTTE
T ss_pred CCCCCcEEEeecCcEEEEECCCCchHHHHHHHHHHHHHHHHHhCEEEEEEecCCCcchhHHHHHHHHHCCC
Confidence 34444433 333444456666677789999999999999999999887766544 8877777888877775
No 44
>4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E
Probab=26.56 E-value=49 Score=27.82 Aligned_cols=50 Identities=16% Similarity=0.173 Sum_probs=35.3
Q ss_pred CCChHHHHHHHHHHHHHHHHcCCeEEEEEEEcCCc-CHHHHHHhhhcCceee
Q psy13610 64 KGTNIAAQAAGITIGKKALEIGVSSVRINVRGLGP-GRLKALEIGVSSVRIN 114 (123)
Q Consensus 64 K~T~~Aa~~aa~~v~~~a~~~Gi~~i~V~ikG~G~-GR~~alkal~~g~~i~ 114 (123)
..|-|.....++.+.+.. ..+++..+|.|.|+|- |..+|.++...|.++-
T Consensus 212 ~aTg~Gv~~~~~~~~~~~-~~~l~Gk~vaVQG~GnVG~~aa~~L~e~GakvV 262 (450)
T 4fcc_A 212 EATGYGLVYFTEAMLKRH-GMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVI 262 (450)
T ss_dssp THHHHHHHHHHHHHHHHT-TCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEE
T ss_pred CceeeeHHHHHHHHHHHc-CCCcCCCEEEEeCCChHHHHHHHHHHhcCCeEE
Confidence 456666665555544332 3567888999999996 8888877778888764
No 45
>2x06_A L-sulfolactate dehydrogenase; oxidoreductase, hyperthermostable, coenzyme M, methanogens, coenzyme M biosynthesis; HET: NAD; 2.50A {Methanocaldococcus jannaschii}
Probab=25.98 E-value=1.4e+02 Score=23.93 Aligned_cols=69 Identities=16% Similarity=0.067 Sum_probs=48.6
Q ss_pred CCCCCEEEEE-eecccccccCCCCChHHHHHHHHHHHHHHHHcCCeEEEEEEEc-CCcCHHHHHHhhhcCc
Q psy13610 43 DAKGVVKLLR-SCGMEGFKNARKGTNIAAQAAGITIGKKALEIGVSSVRINVRG-LGPGRLKALEIGVSSV 111 (123)
Q Consensus 43 D~~G~~l~~~-S~G~~GfK~~rK~T~~Aa~~aa~~v~~~a~~~Gi~~i~V~ikG-~G~GR~~alkal~~g~ 111 (123)
|++.++.... +..+.-+.+..--.+.++..|.+.+.++|++.||-.+-|+=.. +|..-..+.++...|+
T Consensus 62 ~~~~~~~i~~~~~a~~~vDg~~g~G~~~~~~a~~~ai~~Ak~~Gi~~v~v~ns~H~G~~g~y~~~aa~~Gl 132 (344)
T 2x06_A 62 NPKPDIKIVKESPATAVIDGDLGLGQVVGKKAMELAIKKAKNVGVGVVATRNANHFGIAGYYSELAMNQDM 132 (344)
T ss_dssp BSSCCCEEEEECSSEEEEECTTBCHHHHHHHHHHHHHHHHHHHSEEEEEEESCCCCSCTHHHHHHHHTTTS
T ss_pred CCCCCeEEEeccCcEEEEECCCCccHHHHHHHHHHHHHHHHhcCeEEEEeccCccccchHHHHHHHHhcCc
Confidence 3444443333 3333445666667788999999999999999999988766444 7777777888777765
No 46
>1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A {Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB: 1hrd_A 1k89_A 1aup_A 2yfh_A
Probab=25.90 E-value=36 Score=28.53 Aligned_cols=50 Identities=10% Similarity=0.044 Sum_probs=33.2
Q ss_pred CCChHHHHHHHHHHHHHHHHcCCeEEEEEEEcCCc-CHHHHHHhhhcCceee
Q psy13610 64 KGTNIAAQAAGITIGKKALEIGVSSVRINVRGLGP-GRLKALEIGVSSVRIN 114 (123)
Q Consensus 64 K~T~~Aa~~aa~~v~~~a~~~Gi~~i~V~ikG~G~-GR~~alkal~~g~~i~ 114 (123)
..|-|....+++.+.+.. ...++..+|.|.|+|- |..++-++...|.++-
T Consensus 207 ~aTg~Gv~~~~~~~~~~~-G~~l~g~~v~VqG~GnVG~~~a~~L~~~GakvV 257 (449)
T 1bgv_A 207 EATGYGSVYYVEAVMKHE-NDTLVGKTVALAGFGNVAWGAAKKLAELGAKAV 257 (449)
T ss_dssp THHHHHHHHHHHHHHHHT-TCCSTTCEEEECCSSHHHHHHHHHHHHHTCEEE
T ss_pred cchhHHHHHHHHHHHHHc-cCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEE
Confidence 456666665555444333 1335678899999995 8888866767787764
No 47
>1auu_A SACY; antitermination, RNA binding domain, transcription regulation; NMR {Bacillus subtilis} SCOP: b.35.2.1
Probab=25.53 E-value=1.1e+02 Score=18.25 Aligned_cols=32 Identities=22% Similarity=0.389 Sum_probs=22.4
Q ss_pred EEecCCCceEEEeCCCCCEEEEEeecccccccCC
Q psy13610 30 IRVTKNNTILSLSDAKGVVKLLRSCGMEGFKNAR 63 (123)
Q Consensus 30 I~st~NNTiitlTD~~G~~l~~~S~G~~GfK~~r 63 (123)
|.--+||-.+-..| +|+++...-.| +||+...
T Consensus 3 I~KvlNNNvvl~~d-~~~E~Iv~GkG-IGF~kk~ 34 (55)
T 1auu_A 3 IKRILNHNAIVVKD-QNEEKILLGAG-IAFNKKK 34 (55)
T ss_dssp ESCCCSSSEEEEEC-SSSEEEEECTT-SSTTCCT
T ss_pred EEEEecCcEEEEec-CCcEEEEEecc-ceeCCcC
Confidence 55567777777778 89988876655 5996443
No 48
>2bjd_A Acylphosphatase; hyperthermophIle, hydrolase; 1.27A {Sulfolobus solfataricus} PDB: 2bje_A 1y9o_A
Probab=25.27 E-value=1e+02 Score=20.17 Aligned_cols=37 Identities=19% Similarity=0.149 Sum_probs=26.3
Q ss_pred CeEEEEEEEc--CCcC-HHHHHH-hhhcCceeeeeccCCCC
Q psy13610 86 VSSVRINVRG--LGPG-RLKALE-IGVSSVRINVRGLGPGR 122 (123)
Q Consensus 86 i~~i~V~ikG--~G~G-R~~alk-al~~g~~i~~~~~~~~~ 122 (123)
+..+++.|+| -|.| |..+.+ |.+-|+.=.|||+..|+
T Consensus 13 m~~~~i~V~G~VQGVGFR~~v~~~A~~lgL~G~V~N~~dG~ 53 (101)
T 2bjd_A 13 LKRMYARVYGLVQGVGFRKFVQIHAIRLGIKGYAKNLPDGS 53 (101)
T ss_dssp EEEEEEEEEEECSSSSHHHHHHHHHHHTTCEEEEEECTTSC
T ss_pred hEEEEEEEEEeECCcCHHHHHHHHHHHcCCeEEEEECCCCc
Confidence 4577888888 4444 555555 55778888899998875
No 49
>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A
Probab=24.27 E-value=70 Score=26.72 Aligned_cols=50 Identities=18% Similarity=0.285 Sum_probs=33.6
Q ss_pred CCChHHHHHHHHHHHHHHHHcCCeEEEEEEEcCCc-CHHHHHHhhhcCceee
Q psy13610 64 KGTNIAAQAAGITIGKKALEIGVSSVRINVRGLGP-GRLKALEIGVSSVRIN 114 (123)
Q Consensus 64 K~T~~Aa~~aa~~v~~~a~~~Gi~~i~V~ikG~G~-GR~~alkal~~g~~i~ 114 (123)
..|-|.....++.+.+.. ...++..+|.|.|+|- |+.++-++...|.++-
T Consensus 212 ~aTg~Gv~~~~~~~~~~~-g~~l~g~~vaVqGfGnVG~~~a~~L~e~GakvV 262 (440)
T 3aog_A 212 DATGRGVFITAAAAAEKI-GLQVEGARVAIQGFGNVGNAAARAFHDHGARVV 262 (440)
T ss_dssp THHHHHHHHHHHHHHHHH-TCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEE
T ss_pred cchHHHHHHHHHHHHHhc-CCCccCCEEEEeccCHHHHHHHHHHHHCCCEEE
Confidence 456666666665555442 2345678899999995 7777766667787764
No 50
>3r1m_A Putative uncharacterized protein ST0318; sulfolobus fructose-1,6-bisphosphatase-like fold, hydrolase/ Mg binding, metal binding protein; 1.50A {Sulfolobus tokodaii} PDB: 1umg_A*
Probab=24.14 E-value=36 Score=28.20 Aligned_cols=32 Identities=41% Similarity=0.633 Sum_probs=22.6
Q ss_pred HHHHHHHcCCeEEEEEEEcCCcCHHHHHHhhhcCceeeeeccCCC
Q psy13610 77 IGKKALEIGVSSVRINVRGLGPGRLKALEIGVSSVRINVRGLGPG 121 (123)
Q Consensus 77 v~~~a~~~Gi~~i~V~ikG~G~GR~~alkal~~g~~i~~~~~~~~ 121 (123)
..+.|+++|+. |-|+ -.|...++=||||+|||
T Consensus 81 ~TevAK~l~LY-------GAGQ------DLL~DaFSGNvkGmGPg 112 (385)
T 3r1m_A 81 AAKVAKDLGLY-------AAGQ------DLLSDSFSGNVRGLGPG 112 (385)
T ss_dssp HHHHHHHTTCB-------TTTT------TCCSSSCCSCSTTTSCE
T ss_pred HHHHHHHhCcc-------cCch------hhhhcccCccccCCCcc
Confidence 34566777653 4443 36777888999999998
No 51
>3uoe_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.31A {Sinorhizobium meliloti}
Probab=24.03 E-value=1.7e+02 Score=23.67 Aligned_cols=69 Identities=12% Similarity=0.018 Sum_probs=49.6
Q ss_pred CCCCCEE-EEEeecccccccCCCCChHHHHHHHHHHHHHHHHcCCeEEEEEEEc-CCcCHHHHHHhhhcCc
Q psy13610 43 DAKGVVK-LLRSCGMEGFKNARKGTNIAAQAAGITIGKKALEIGVSSVRINVRG-LGPGRLKALEIGVSSV 111 (123)
Q Consensus 43 D~~G~~l-~~~S~G~~GfK~~rK~T~~Aa~~aa~~v~~~a~~~Gi~~i~V~ikG-~G~GR~~alkal~~g~ 111 (123)
|++.++. ......+.-+.+.+--.+.++..|-+.+.++|++.||-.+-|+=.. +|..-..+.++...|+
T Consensus 85 ~~~a~p~v~~~~~a~~~vDg~~g~G~~~~~~Am~~aiekAk~~Gig~v~vrnS~H~G~~g~y~~~aa~~Gl 155 (357)
T 3uoe_A 85 NPTTRGNGTWRRASFLSVDGERGLGPVVMMDAMRVTRRILKETGLAIAAIRNANHMGMLAYYAEAAARDGL 155 (357)
T ss_dssp BSSCCCEEEEEETTEEEEEEEEECHHHHHHHHHHHHHHHHHHHSEEEEEEEEECCCCCTHHHHHHHHHTTC
T ss_pred CCCCCcEEEEecCcEEEEECCCCchHHHHHHHHHHHHHHHHHhCEEEEEEecCCCccchHHHHHHHHHCCC
Confidence 3444433 2333344455666667788999999999999999999887776555 8888888888887775
No 52
>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*
Probab=23.88 E-value=1.3e+02 Score=24.12 Aligned_cols=50 Identities=20% Similarity=0.219 Sum_probs=32.7
Q ss_pred CChHHHHHHHHHHHHHHHHcC---CeEEEEEEEcCCc-CHHHHHHhhhcCceeeeec
Q psy13610 65 GTNIAAQAAGITIGKKALEIG---VSSVRINVRGLGP-GRLKALEIGVSSVRINVRG 117 (123)
Q Consensus 65 ~T~~Aa~~aa~~v~~~a~~~G---i~~i~V~ikG~G~-GR~~alkal~~g~~i~~~~ 117 (123)
.|-|.....++. .++.+| +..-.|.|.|+|. |+.++-++...|.+|-+=.
T Consensus 152 aTg~Gv~~~~~~---~~~~~G~~~L~GktV~I~G~GnVG~~~A~~l~~~GakVvvsD 205 (355)
T 1c1d_A 152 TTAVGVFEAMKA---TVAHRGLGSLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVAD 205 (355)
T ss_dssp HHHHHHHHHHHH---HHHHTTCCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHHH---HHHhcCCCCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEe
Confidence 344444444443 344445 4566888899996 8888877878899886543
No 53
>1urr_A CG18505 protein; acylphosphatase, enzyme; 1.5A {Drosophila melanogaster} SCOP: d.58.10.1
Probab=22.89 E-value=1.2e+02 Score=19.82 Aligned_cols=37 Identities=16% Similarity=0.074 Sum_probs=26.3
Q ss_pred CeEEEEEEEc--CCcC-HHHHHH-hhhcCceeeeeccCCCC
Q psy13610 86 VSSVRINVRG--LGPG-RLKALE-IGVSSVRINVRGLGPGR 122 (123)
Q Consensus 86 i~~i~V~ikG--~G~G-R~~alk-al~~g~~i~~~~~~~~~ 122 (123)
+..+++.|+| -|.| |..+.+ |.+-|+.=-|||+..|+
T Consensus 10 m~~~~i~V~G~VQGVGFR~~v~~~A~~lgL~G~V~N~~dG~ 50 (102)
T 1urr_A 10 IFALDFEIFGRVQGVFFRKHTSHEAKRLGVRGWCMNTRDGT 50 (102)
T ss_dssp EEEEEEEEEEECSSSSHHHHHHHHHHHHTCEEEEEECTTSC
T ss_pred cEEEEEEEEEeECCcChhHHHHHHHHHhCCcEEEEECCCCC
Confidence 4677888888 3444 555655 55668888899998885
No 54
>1rfm_A L-sulfolactate dehydrogenase; methanogens, coenzyme M, hyperthermostable, Pro-S hydrogen transfer; HET: NAD; 2.50A {Methanocaldococcus jannaschii} PDB: 2x06_A*
Probab=22.71 E-value=1.7e+02 Score=23.41 Aligned_cols=57 Identities=14% Similarity=-0.018 Sum_probs=44.4
Q ss_pred ccccccCCCCChHHHHHHHHHHHHHHHHcCCeEEEEEEEc-CCcCHHHHHHhhhcCce
Q psy13610 56 MEGFKNARKGTNIAAQAAGITIGKKALEIGVSSVRINVRG-LGPGRLKALEIGVSSVR 112 (123)
Q Consensus 56 ~~GfK~~rK~T~~Aa~~aa~~v~~~a~~~Gi~~i~V~ikG-~G~GR~~alkal~~g~~ 112 (123)
+.-+.+.+--.+.++..|-+.+.++|++.||-.+-|+=.. +|..-..+.++...|+-
T Consensus 76 ~~~vDg~~g~G~~~~~~am~~aiekAk~~Gig~v~vrns~H~G~~g~y~~~aa~~Gli 133 (344)
T 1rfm_A 76 TAVIDGDLGLGQVVGKKAMELAIKKAKNVGVGVVATRNANHFGIAGYYSELAMNQDMI 133 (344)
T ss_dssp EEEEEEEEECHHHHHHHHHHHHHHHHHHHSEEEEEEEEECCCSCTHHHHHHHHTTTSE
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHHHHhCEEEEEEecCCCcchhHHHHHHHHHCCCe
Confidence 3345555566688999999999999999999887776555 88888888888877763
No 55
>3rys_A Adenosine deaminase 1; SGX, hydrolase; HET: ADE; 2.60A {Arthrobacter aurescens} SCOP: c.1.9.0
Probab=21.89 E-value=1.3e+02 Score=23.79 Aligned_cols=42 Identities=14% Similarity=-0.015 Sum_probs=31.9
Q ss_pred ChHHHHHHHHHHHHHHHHcCCeEEEEEE-----EcCCcCHHHHHHhh
Q psy13610 66 TNIAAQAAGITIGKKALEIGVSSVRINV-----RGLGPGRLKALEIG 107 (123)
Q Consensus 66 T~~Aa~~aa~~v~~~a~~~Gi~~i~V~i-----kG~G~GR~~alkal 107 (123)
|+.+-..++..+.+.+.+.|+.+++|++ -+-|.-.+.+++++
T Consensus 75 ~~e~~~~~~~~~l~~~~~dgV~y~Eir~~P~~~~~~gl~~~~~v~~v 121 (343)
T 3rys_A 75 TEQDFTDMTRAYLERAAAGGVRHAEIMMDPQAHTSRGVALETCVNGV 121 (343)
T ss_dssp SHHHHHHHHHHHHHHHHHTTEEEEEEEECHHHHHTTTCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCEEEEEEecHHHhccCCCCHHHHHHHH
Confidence 6777778888888999999999999998 23455556666643
No 56
>3d33_A Domain of unknown function with AN immunoglobulin beta-sandwich fold; structural genomics, joint center for structural genomics; HET: MSE; 1.70A {Bacteroides vulgatus atcc 8482}
Probab=21.74 E-value=1e+02 Score=20.74 Aligned_cols=27 Identities=15% Similarity=0.156 Sum_probs=19.5
Q ss_pred EEEEecCCCceEEEe-CCCCCEEEEEee
Q psy13610 28 MNIRVTKNNTILSLS-DAKGVVKLLRSC 54 (123)
Q Consensus 28 ~hI~st~NNTiitlT-D~~G~~l~~~S~ 54 (123)
+|......|.-|+++ |.+|+++...+.
T Consensus 42 I~F~~~~~~vtItI~~~~tG~iVY~~~v 69 (108)
T 3d33_A 42 LKNASPDRDMTIRITDMAKGGVVYENDI 69 (108)
T ss_dssp EEESSCCSEEEEEEEETTTCCEEEEEEE
T ss_pred EEECCcCCCEEEEEEECCCCcEEEEEee
Confidence 344455667778889 899999876554
No 57
>1xrh_A Ureidoglycolate dehydrogenase; structural genomics, protein structure initiative, NYSGXRC, ALLD, GLXB8, B0517, PSI; 2.25A {Escherichia coli} SCOP: c.122.1.1
Probab=21.73 E-value=1.6e+02 Score=23.61 Aligned_cols=53 Identities=19% Similarity=0.122 Sum_probs=42.7
Q ss_pred cccCCCCChHHHHHHHHHHHHHHHHcCCeEEEEEEEc-CCcCHHHHHHhhhcCc
Q psy13610 59 FKNARKGTNIAAQAAGITIGKKALEIGVSSVRINVRG-LGPGRLKALEIGVSSV 111 (123)
Q Consensus 59 fK~~rK~T~~Aa~~aa~~v~~~a~~~Gi~~i~V~ikG-~G~GR~~alkal~~g~ 111 (123)
+.+.+--.+.++..|-+.+.++|++.||-.+-|+=.. +|..-..+.++...|+
T Consensus 81 vDg~~g~G~~~~~~am~~aiekAk~~Gi~~v~vrns~H~G~~g~y~~~aa~~Gl 134 (351)
T 1xrh_A 81 LHADNAAGQVAAKMGMEHAIKTAQQNGVAVVGISRMGHSGAISYFVQQAARAGF 134 (351)
T ss_dssp EEEEEECHHHHHHHHHHHHHHHHHHHSEEEEEEEEECCCCCTHHHHHHHHHTTS
T ss_pred EECCCCcHHHHHHHHHHHHHHHHHHcCEEEEEEeCCCCcchHHHHHHHHHHCCC
Confidence 4444555678999999999999999999887776555 8888888888888877
No 58
>1aps_A Acylphosphatase; hydrolase(acting on acid anhydrides); NMR {Equus caballus} SCOP: d.58.10.1
Probab=21.45 E-value=90 Score=20.20 Aligned_cols=38 Identities=26% Similarity=0.189 Sum_probs=25.0
Q ss_pred CCeEEEEEEEc--CCcC-HHHHHH-hhhcCceeeeeccCCCC
Q psy13610 85 GVSSVRINVRG--LGPG-RLKALE-IGVSSVRINVRGLGPGR 122 (123)
Q Consensus 85 Gi~~i~V~ikG--~G~G-R~~alk-al~~g~~i~~~~~~~~~ 122 (123)
.+..+++.|+| =|.| |..+.+ |.+-|+.=-|||+..|+
T Consensus 5 ~m~~~~i~V~G~VQGVGFR~~v~~~A~~lgL~G~V~N~~dG~ 46 (98)
T 1aps_A 5 PLKSVDYEVFGRVQGVCFRMYAEDEARKIGVVGWVKNTSKGT 46 (98)
T ss_dssp CEEEEEEEEECTTSCCCCTTHHHHHHHHHTCEEEEECCTTCE
T ss_pred ceEEEEEEEEEEECCcCHHHHHHHHHHHcCCeEEEEECCCCc
Confidence 35677788877 2322 555655 45668887788888774
No 59
>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}
Probab=21.28 E-value=88 Score=25.87 Aligned_cols=50 Identities=22% Similarity=0.339 Sum_probs=33.4
Q ss_pred CCChHHHHHHHHHHHHHHHHcCCeEEEEEEEcCCc-CHHHHHHhhhcCceee
Q psy13610 64 KGTNIAAQAAGITIGKKALEIGVSSVRINVRGLGP-GRLKALEIGVSSVRIN 114 (123)
Q Consensus 64 K~T~~Aa~~aa~~v~~~a~~~Gi~~i~V~ikG~G~-GR~~alkal~~g~~i~ 114 (123)
..|-|.....++.+.+.. ...++..+|.|.|+|- |+.++-++...|.++-
T Consensus 195 ~aTg~Gv~~~~~~~~~~~-g~~l~gk~vaVqG~GnVG~~~a~~L~~~GakVV 245 (419)
T 3aoe_E 195 DAAGLGALLVLEALAKRR-GLDLRGARVVVQGLGQVGAAVALHAERLGMRVV 245 (419)
T ss_dssp CHHHHHHHHHHHHHHHHH-TCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEE
T ss_pred cchHHHHHHHHHHHHHhc-CCCccCCEEEEECcCHHHHHHHHHHHHCCCEEE
Confidence 456666666655555442 2345678899999996 7777766667788775
No 60
>1l1c_A Transcription antiterminator LICT; protein RNA complex, antiterminator complex, RNA hairpin, transcription/RNA complex; NMR {Bacillus subtilis} SCOP: b.35.2.1
Probab=20.98 E-value=1.2e+02 Score=18.07 Aligned_cols=33 Identities=21% Similarity=0.348 Sum_probs=21.9
Q ss_pred EEecCCCceEEEeCCCCCEEEEEeecccccccCC
Q psy13610 30 IRVTKNNTILSLSDAKGVVKLLRSCGMEGFKNAR 63 (123)
Q Consensus 30 I~st~NNTiitlTD~~G~~l~~~S~G~~GfK~~r 63 (123)
|.--+||-.+-..|.+|+++...-.| +||+...
T Consensus 3 I~KvlNNNvvl~~~~~~~E~Iv~GkG-IGF~kk~ 35 (55)
T 1l1c_A 3 IAKVINNNVISVVNEQGKELVVMGRG-LAFQKKS 35 (55)
T ss_dssp EEEEEETTEEEEECTTSCEEEEECSS-SSTTCCT
T ss_pred EEEEecCcEEEEEcCCCCEEEEEecc-ceeCCcC
Confidence 34445666566678889988876655 5996543
No 61
>3iar_A Adenosine deaminase; purine metabolism structural genomics, structural genomics consortium, SGC, D mutation, hereditary hemolytic anemia, hydrolase; HET: 3D1; 1.52A {Homo sapiens} SCOP: c.1.9.1 PDB: 2bgn_E* 1w1i_E* 1qxl_A* 1krm_A* 1vfl_A 1ndv_A* 1ndy_A* 1ndz_A* 1o5r_A* 1uml_A* 1v79_A* 1v7a_A* 1ndw_A 1wxy_A* 1wxz_A* 2e1w_A* 2z7g_A* 2ada_A* 3mvi_A 1a4l_A* ...
Probab=20.73 E-value=1.3e+02 Score=23.97 Aligned_cols=31 Identities=16% Similarity=0.132 Sum_probs=26.4
Q ss_pred CCChHHHHHHHHHHHHHHHHcCCeEEEEEEE
Q psy13610 64 KGTNIAAQAAGITIGKKALEIGVSSVRINVR 94 (123)
Q Consensus 64 K~T~~Aa~~aa~~v~~~a~~~Gi~~i~V~ik 94 (123)
..|+.+-..++..+.+.+.+.|+.+++|++-
T Consensus 70 ~~~~edl~~~a~e~~ed~a~dgV~Y~Eir~~ 100 (367)
T 3iar_A 70 AGCREAIKRIAYEFVEMKAKEGVVYVEVRYS 100 (367)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTTEEEEEEEEC
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCEEEEEEec
Confidence 3567888888888899999999999999984
No 62
>1mp9_A Tata-binding protein; transcription regulation, DNA-binding protein, transcription factor, DNA binding protein; 2.00A {Sulfolobus acidocaldarius} SCOP: d.129.1.1 d.129.1.1
Probab=20.59 E-value=1.1e+02 Score=22.70 Aligned_cols=46 Identities=17% Similarity=0.096 Sum_probs=31.0
Q ss_pred EEEeCCCCCEEEEEeecccccccCCCCChHHHHHHHHHHHHHHHHcCCe
Q psy13610 39 LSLSDAKGVVKLLRSCGMEGFKNARKGTNIAAQAAGITIGKKALEIGVS 87 (123)
Q Consensus 39 itlTD~~G~~l~~~S~G~~GfK~~rK~T~~Aa~~aa~~v~~~a~~~Gi~ 87 (123)
+-+.+++-..+.| |+|.+--.|++ |...+..|+.++++..+++|++
T Consensus 52 ~Rl~~Pk~t~lIF-~SGKiv~TGak--S~e~a~~a~~~i~~~L~~lG~~ 97 (198)
T 1mp9_A 52 FRLESPKITSLIF-KSGKMVVTGAK--STDELIKAVKRIIKTLKKYGMQ 97 (198)
T ss_dssp EEETTTTEEEEEC-TTSEEEEECCS--SHHHHHHHHHHHHHHHHHTTCC
T ss_pred EEcCCCceEEEEe-CCCeEEEeccC--CHHHHHHHHHHHHHHHHHcCCc
Confidence 3444555555555 55555555555 4467888999999999999985
No 63
>2dg5_B Gamma-glutamyltranspeptidase; gamma-glutamyltransferase, GGT, gamma-GT, glutathione; HET: GLU; 1.60A {Escherichia coli K12} SCOP: d.153.1.6 PDB: 2dbu_B 2dbw_B* 2dbx_B* 2e0x_B 2e0y_B 2z8i_B* 2z8j_B* 2z8k_B*
Probab=20.13 E-value=97 Score=22.64 Aligned_cols=18 Identities=22% Similarity=0.167 Sum_probs=16.0
Q ss_pred ceEEEeCCCCCEEEEEee
Q psy13610 37 TILSLSDAKGVVKLLRSC 54 (123)
Q Consensus 37 TiitlTD~~G~~l~~~S~ 54 (123)
|++++.|.+||.+..+++
T Consensus 2 th~svvD~~GnaVS~T~S 19 (190)
T 2dg5_B 2 THYSVVDKDGNAVAVTYT 19 (190)
T ss_dssp EEEEEECTTSCEEEEEEE
T ss_pred eEEEEECCCCCEEEEEec
Confidence 689999999999888877
Done!