Your job contains 1 sequence.
>psy13610
MARKDIFPDENTPDLIFDGLKFKNLPIMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFK
NARKGTNIAAQAAGITIGKKALEIGVSSVRINVRGLGPGRLKALEIGVSSVRINVRGLGP
GRL
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy13610
(123 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0038474 - symbol:mRpS11 "mitochondrial ribosomal p... 335 2.3e-30 1
ZFIN|ZDB-GENE-040724-84 - symbol:mrps11 "mitochondrial ri... 228 5.1e-19 1
WB|WBGene00012244 - symbol:mrps-11 species:6239 "Caenorha... 225 1.1e-18 1
UNIPROTKB|E2R6F3 - symbol:MRPS11 "Uncharacterized protein... 214 1.6e-17 1
UNIPROTKB|P82912 - symbol:MRPS11 "28S ribosomal protein S... 211 3.2e-17 1
MGI|MGI:1915244 - symbol:Mrps11 "mitochondrial ribosomal ... 210 4.1e-17 1
RGD|1559901 - symbol:Mrps11 "mitochondrial ribosomal prot... 210 4.1e-17 1
UNIPROTKB|F1SRT1 - symbol:MRPS11 "Uncharacterized protein... 207 8.6e-17 1
UNIPROTKB|F1N498 - symbol:MRPS11 "28S ribosomal protein S... 206 1.1e-16 1
UNIPROTKB|P82911 - symbol:MRPS11 "28S ribosomal protein S... 206 1.1e-16 1
UNIPROTKB|Q5ZL20 - symbol:MRPS11 "Uncharacterized protein... 188 8.8e-15 1
UNIPROTKB|D4A0K2 - symbol:D4A0K2 "Uncharacterized protein... 185 1.8e-14 1
TIGR_CMR|GSU_2833 - symbol:GSU_2833 "ribosomal protein S1... 161 6.4e-12 1
TIGR_CMR|DET_0500 - symbol:DET_0500 "ribosomal protein S1... 160 8.2e-12 1
TIGR_CMR|CHY_2283 - symbol:CHY_2283 "ribosomal protein S1... 147 2.0e-10 1
TIGR_CMR|CBU_0261 - symbol:CBU_0261 "ribosomal protein S1... 146 2.5e-10 1
TIGR_CMR|BA_0136 - symbol:BA_0136 "ribosomal protein S11"... 144 4.1e-10 1
UNIPROTKB|P46746 - symbol:RPS11 "Ribosomal protein S11, m... 143 5.2e-10 1
TIGR_CMR|SPO_0510 - symbol:SPO_0510 "ribosomal protein S1... 141 8.4e-10 1
UNIPROTKB|O06326 - symbol:rpsK "30S ribosomal protein S11... 139 1.4e-09 1
TIGR_CMR|CPS_0624 - symbol:CPS_0624 "ribosomal protein S1... 137 2.2e-09 1
UNIPROTKB|P66367 - symbol:rpsK "30S ribosomal protein S11... 127 2.6e-08 1
TIGR_CMR|VC_2573 - symbol:VC_2573 "ribosomal protein S11"... 127 2.6e-08 1
TIGR_CMR|SO_0254 - symbol:SO_0254 "ribosomal protein S11"... 126 3.3e-08 1
UNIPROTKB|P0A7R9 - symbol:rpsK species:83333 "Escherichia... 125 4.2e-08 1
UNIPROTKB|P0C462 - symbol:rps11 "30S ribosomal protein S1... 119 1.8e-07 1
UNIPROTKB|P0C463 - symbol:rps11 "30S ribosomal protein S1... 119 1.8e-07 1
UNIPROTKB|P0C464 - symbol:rps11 "30S ribosomal protein S1... 119 1.8e-07 1
UNIPROTKB|Q6ENE1 - symbol:rps11 "30S ribosomal protein S1... 119 1.8e-07 1
TAIR|locus:2826195 - symbol:NFD3 "NUCLEAR FUSION DEFECTIV... 124 2.3e-07 1
TIGR_CMR|CJE_1765 - symbol:CJE_1765 "ribosomal protein S1... 116 3.8e-07 1
TIGR_CMR|ECH_0431 - symbol:ECH_0431 "ribosomal protein S1... 115 4.8e-07 1
TIGR_CMR|NSE_0288 - symbol:NSE_0288 "ribosomal protein S1... 110 1.6e-06 1
TIGR_CMR|APH_0302 - symbol:APH_0302 "ribosomal protein S1... 108 2.6e-06 1
>FB|FBgn0038474 [details] [associations]
symbol:mRpS11 "mitochondrial ribosomal protein S11"
species:7227 "Drosophila melanogaster" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0005763 "mitochondrial
small ribosomal subunit" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] InterPro:IPR001971 Pfam:PF00411 EMBL:AE014297
GO:GO:0006412 GO:GO:0003735 GO:GO:0005763 Gene3D:3.30.420.80
PANTHER:PTHR11759 CTD:64963 GeneTree:ENSGT00390000016068
OMA:EGFKNTR FlyBase:FBgn0038474 ChiTaRS:MRPS11 EMBL:AY095194
EMBL:DQ062760 RefSeq:NP_524382.1 UniGene:Dm.20701 SMR:Q9VEN6
STRING:Q9VEN6 EnsemblMetazoa:FBtr0089894 GeneID:42061
KEGG:dme:Dmel_CG5184 UCSC:CG5184-RA InParanoid:Q9VEN6
GenomeRNAi:42061 NextBio:826975 Uniprot:Q9VEN6
Length = 200
Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
Identities = 62/109 (56%), Positives = 86/109 (78%)
Query: 7 FPDENTPDLIFDGLKFKNLPIMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFKNARKGT 66
FPD +T + +F+G+ F LPI NIRV+ NNTI+S++D KGV++L+RSCG+EGFKN RKGT
Sbjct: 71 FPDASTANTLFNGIPFNELPICNIRVSPNNTIISVTDHKGVLRLIRSCGIEGFKNTRKGT 130
Query: 67 NIAAQAAGITIGKKALEIGVSSVRINVRGLGPGRLKALEIGVSSVRINV 115
NIAAQA +TI KA+E+G +VR+ VRGLGPGR+ A++ G+ +N+
Sbjct: 131 NIAAQATAVTISGKAIELGWKTVRVKVRGLGPGRMSAIK-GLQMGGLNI 178
>ZFIN|ZDB-GENE-040724-84 [details] [associations]
symbol:mrps11 "mitochondrial ribosomal protein S11"
species:7955 "Danio rerio" [GO:0005840 "ribosome" evidence=IEA]
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR001971 Pfam:PF00411 ZFIN:ZDB-GENE-040724-84
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 Gene3D:3.30.420.80
PANTHER:PTHR11759 GeneTree:ENSGT00390000016068 EMBL:CU468051
IPI:IPI00855560 Ensembl:ENSDART00000135446 ArrayExpress:F1QDM5
Bgee:F1QDM5 Uniprot:F1QDM5
Length = 240
Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
Identities = 47/94 (50%), Positives = 63/94 (67%)
Query: 7 FPDENTPDLIFDGLKFKNLPIMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFKNARKGT 66
FP E++P L +D KF+ LPI +++ T NNT + ++D G + SCG EGFKN +K T
Sbjct: 99 FPGEDSP-LRWDSKKFEELPIAHVKATYNNTHIQVTDCAGQYMVRTSCGTEGFKNVKKST 157
Query: 67 NIAAQAAGITIGKKALEIGVSSVRINVRGLGPGR 100
IAAQ AGI+ KA GV+ VR+ V+GLGPGR
Sbjct: 158 PIAAQTAGISAAAKARAKGVTYVRVLVKGLGPGR 191
>WB|WBGene00012244 [details] [associations]
symbol:mrps-11 species:6239 "Caenorhabditis elegans"
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
InterPro:IPR001971 Pfam:PF00411 GO:GO:0009792 GO:GO:0006898
GO:GO:0040010 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 EMBL:Z75552
Gene3D:3.30.420.80 PANTHER:PTHR11759 eggNOG:COG0100
HOGENOM:HOG000111599 PIR:T26144 RefSeq:NP_506131.1
ProteinModelPortal:Q23155 SMR:Q23155 IntAct:Q23155 STRING:Q23155
PaxDb:Q23155 EnsemblMetazoa:W04D2.5.1 EnsemblMetazoa:W04D2.5.2
GeneID:179711 KEGG:cel:CELE_W04D2.5 UCSC:W04D2.5.1 CTD:179711
WormBase:W04D2.5 GeneTree:ENSGT00390000016068 InParanoid:Q23155
OMA:EGFKNTR NextBio:906550 Uniprot:Q23155
Length = 208
Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
Identities = 44/107 (41%), Positives = 68/107 (63%)
Query: 8 PDENTPDLIFDGLKFKNLPIMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFKNARKGTN 67
P T FDG+ + LP++ IR +KNNT++++ D K V SC +EGFKNARK T
Sbjct: 80 PTAETLKQQFDGVAYHELPLVYIRASKNNTLVTVMDNKNEVITSTSCRLEGFKNARKKTT 139
Query: 68 IAAQAAGITIGKKALEIGVSSVRINVRGLGPGRLKALE-IGVSSVRI 113
IA Q G+ G++ + G+ +VR+ V+GLGPGR+ ++ + V+ V +
Sbjct: 140 IAGQTTGVAAGQRLVRRGIRTVRVQVKGLGPGRMTCVKGLTVAGVHV 186
>UNIPROTKB|E2R6F3 [details] [associations]
symbol:MRPS11 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] InterPro:IPR001971 Pfam:PF00411 GO:GO:0005739
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 Gene3D:3.30.420.80
InterPro:IPR018102 PANTHER:PTHR11759 PROSITE:PS00054 CTD:64963
OMA:HIKASHN GeneTree:ENSGT00390000016068 EMBL:AAEX03002316
RefSeq:XP_545845.2 Ensembl:ENSCAFT00000018243 GeneID:488727
KEGG:cfa:488727 NextBio:20862029 Uniprot:E2R6F3
Length = 196
Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 45/98 (45%), Positives = 63/98 (64%)
Query: 8 PDENTPDLIFDGLKFKNLPIMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFKNARKGTN 67
P + +P L + G KF+ +PI +I+ + NNT + + A SCG EGF+NA+KGT
Sbjct: 69 PGQESP-LRWAGKKFEEIPIAHIKASYNNTQIQVVSAANQPLARTSCGTEGFRNAKKGTG 127
Query: 68 IAAQAAGITIGKKALEIGVSSVRINVRGLGPGRLKALE 105
IAAQ AGI KA GV+ +R+ V+GLGPGRL A++
Sbjct: 128 IAAQTAGIAAAVKATGKGVTHIRVVVKGLGPGRLSAIK 165
>UNIPROTKB|P82912 [details] [associations]
symbol:MRPS11 "28S ribosomal protein S11, mitochondrial"
species:9606 "Homo sapiens" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
[GO:0042769 "DNA damage response, detection of DNA damage"
evidence=NAS] [GO:0005763 "mitochondrial small ribosomal subunit"
evidence=ISS;IDA] InterPro:IPR001971 Pfam:PF00411 GO:GO:0006412
GO:GO:0003735 EMBL:CH471101 GO:GO:0005763 GO:GO:0042769
Gene3D:3.30.420.80 HAMAP:MF_01310 InterPro:IPR018102
PANTHER:PTHR11759 PROSITE:PS00054 eggNOG:COG0100 CTD:64963
HOGENOM:HOG000111599 HOVERGEN:HBG036124 OrthoDB:EOG4CZBHG
EMBL:AB049944 EMBL:AF320777 EMBL:AK026165 EMBL:AK315407
EMBL:BC009451 EMBL:BC012489 EMBL:BC032378 IPI:IPI00010244
IPI:IPI00219350 IPI:IPI00219351 RefSeq:NP_073750.2
RefSeq:NP_789775.1 UniGene:Hs.111286 ProteinModelPortal:P82912
SMR:P82912 IntAct:P82912 STRING:P82912 PhosphoSite:P82912
DMDM:21263985 PaxDb:P82912 PRIDE:P82912 DNASU:64963
Ensembl:ENST00000325844 Ensembl:ENST00000353598 GeneID:64963
KEGG:hsa:64963 UCSC:uc002bml.3 UCSC:uc002bmm.3 UCSC:uc002bmn.3
GeneCards:GC15P089010 HGNC:HGNC:14050 MIM:611977 neXtProt:NX_P82912
PharmGKB:PA30994 InParanoid:P82912 OMA:HIKASHN PhylomeDB:P82912
GenomeRNAi:64963 NextBio:67138 Bgee:P82912 CleanEx:HS_MRPS11
Genevestigator:P82912 GermOnline:ENSG00000181991 Uniprot:P82912
Length = 194
Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
Identities = 44/97 (45%), Positives = 61/97 (62%)
Query: 8 PDENTPDLIFDGLKFKNLPIMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFKNARKGTN 67
P E + L + G KF+ +PI +I+ + NNT + + A SCG EGF+NA+KGT
Sbjct: 67 PGEES-SLRWAGKKFEEIPIAHIKASHNNTQIQVVSASNEPLAFASCGTEGFRNAKKGTG 125
Query: 68 IAAQAAGITIGKKALEIGVSSVRINVRGLGPGRLKAL 104
IAAQ AGI +A + GV +R+ V+GLGPGRL A+
Sbjct: 126 IAAQTAGIAAAARAKQKGVIHIRVVVKGLGPGRLSAM 162
>MGI|MGI:1915244 [details] [associations]
symbol:Mrps11 "mitochondrial ribosomal protein S11"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0005763 "mitochondrial small
ribosomal subunit" evidence=ISO] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] InterPro:IPR001971 Pfam:PF00411
MGI:MGI:1915244 GO:GO:0006412 GO:GO:0003735 GO:GO:0005763
Gene3D:3.30.420.80 HAMAP:MF_01310 InterPro:IPR018102
PANTHER:PTHR11759 PROSITE:PS00054 eggNOG:COG0100
HOGENOM:HOG000111599 HOVERGEN:HBG036124 OrthoDB:EOG4CZBHG
EMBL:AK002993 EMBL:BC005701 EMBL:BC028279 EMBL:AB049945
IPI:IPI00120620 UniGene:Mm.297033 ProteinModelPortal:Q9DCA2
SMR:Q9DCA2 STRING:Q9DCA2 PhosphoSite:Q9DCA2 PaxDb:Q9DCA2
PRIDE:Q9DCA2 InParanoid:Q9DCA2 CleanEx:MM_MRPS11
Genevestigator:Q9DCA2 GermOnline:ENSMUSG00000030611 Uniprot:Q9DCA2
Length = 191
Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
Identities = 41/87 (47%), Positives = 58/87 (66%)
Query: 19 GLKFKNLPIMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFKNARKGTNIAAQAAGITIG 78
G+KF+++PI +I+ T NNT + + A SCG EGF+NA+KGT IAAQ AGI
Sbjct: 74 GMKFEDVPIAHIKATYNNTQIQVVSATNASLARASCGTEGFRNAKKGTGIAAQTAGIAAA 133
Query: 79 KKALEIGVSSVRINVRGLGPGRLKALE 105
KA GV+ +R+ V+G+GPGR A++
Sbjct: 134 AKATGKGVTHIRVVVKGMGPGRWSAIK 160
>RGD|1559901 [details] [associations]
symbol:Mrps11 "mitochondrial ribosomal protein S11"
species:10116 "Rattus norvegicus" [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISO] [GO:0005763 "mitochondrial small ribosomal subunit"
evidence=ISO] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] InterPro:IPR001971 Pfam:PF00411
RGD:1559901 GO:GO:0006412 EMBL:CH473980 GO:GO:0005840 GO:GO:0003735
Gene3D:3.30.420.80 InterPro:IPR018102 PANTHER:PTHR11759
PROSITE:PS00054 CTD:64963 OrthoDB:EOG4CZBHG OMA:HIKASHN
GeneTree:ENSGT00390000016068 IPI:IPI00361127 RefSeq:NP_001102618.1
UniGene:Rn.759 Ensembl:ENSRNOT00000025008 GeneID:499185
KEGG:rno:499185 UCSC:RGD:1559901 NextBio:702106 Uniprot:D4A040
Length = 191
Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
Identities = 45/106 (42%), Positives = 64/106 (60%)
Query: 2 ARKDIFPDE--NTPDLIFDGLKFKNLPIMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGF 59
+R I+P L + G+KF+ +PI +I+ T NNT + + A SCG EGF
Sbjct: 55 SRFSIYPPVPGQESSLQWAGMKFEEVPIAHIKATYNNTQIQVVSATNTSLARASCGTEGF 114
Query: 60 KNARKGTNIAAQAAGITIGKKALEIGVSSVRINVRGLGPGRLKALE 105
+NA+KGT IAAQ AGI KA GV+ +R+ V+G+GPGR A++
Sbjct: 115 RNAKKGTGIAAQTAGIAAAAKATGKGVTHIRVVVKGIGPGRWSAIK 160
>UNIPROTKB|F1SRT1 [details] [associations]
symbol:MRPS11 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005739 "mitochondrion" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
InterPro:IPR001971 Pfam:PF00411 GO:GO:0005739 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 Gene3D:3.30.420.80 InterPro:IPR018102
PANTHER:PTHR11759 PROSITE:PS00054 CTD:64963 OMA:HIKASHN
GeneTree:ENSGT00390000016068 EMBL:FP102243 RefSeq:NP_001231457.1
UniGene:Ssc.4908 Ensembl:ENSSSCT00000005626 GeneID:414415
KEGG:ssc:414415 ArrayExpress:F1SRT1 Uniprot:F1SRT1
Length = 196
Score = 207 (77.9 bits), Expect = 8.6e-17, P = 8.6e-17
Identities = 46/96 (47%), Positives = 62/96 (64%)
Query: 10 ENTPDLIFDGLKFKNLPIMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFKNARKGTNIA 69
EN+ L + G KF+ +PI +I+ + NNT + + A SCG EGF+NA+KGT IA
Sbjct: 72 ENS--LRWAGKKFEEIPIAHIKASYNNTQIQVVSAAHQPLAHASCGTEGFRNAKKGTGIA 129
Query: 70 AQAAGITIGKKALEIGVSSVRINVRGLGPGRLKALE 105
AQ AGI KA GV+ VR+ V+GLGPGRL A++
Sbjct: 130 AQTAGIAAAAKATGKGVTHVRVVVKGLGPGRLSAIK 165
>UNIPROTKB|F1N498 [details] [associations]
symbol:MRPS11 "28S ribosomal protein S11, mitochondrial"
species:9913 "Bos taurus" [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] InterPro:IPR001971 Pfam:PF00411 GO:GO:0005739
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 Gene3D:3.30.420.80
InterPro:IPR018102 PANTHER:PTHR11759 PROSITE:PS00054
IPI:IPI00704366 UniGene:Bt.48989 OMA:HIKASHN
GeneTree:ENSGT00390000016068 EMBL:DAAA02052093 EMBL:DAAA02052094
EMBL:DAAA02052095 EMBL:DAAA02052096 EMBL:DAAA02052097
EMBL:DAAA02052098 EMBL:DAAA02052099 EMBL:DAAA02052100
EMBL:DAAA02052101 EMBL:DAAA02052102 EMBL:DAAA02052103
EMBL:DAAA02052104 Ensembl:ENSBTAT00000026421 Uniprot:F1N498
Length = 197
Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 43/87 (49%), Positives = 57/87 (65%)
Query: 19 GLKFKNLPIMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFKNARKGTNIAAQAAGITIG 78
G KF+ +PI +I+ + NNT + + A SCG EGF+NA+KGT IAAQ AGI
Sbjct: 80 GKKFEEIPIAHIKASYNNTQIHVVSAAHQPLARASCGTEGFRNAKKGTGIAAQTAGIAAA 139
Query: 79 KKALEIGVSSVRINVRGLGPGRLKALE 105
KA GV+ VR+ V+GLGPGRL A++
Sbjct: 140 AKATGKGVTHVRVVVKGLGPGRLSAIK 166
>UNIPROTKB|P82911 [details] [associations]
symbol:MRPS11 "28S ribosomal protein S11, mitochondrial"
species:9913 "Bos taurus" [GO:0043043 "peptide biosynthetic
process" evidence=IC] [GO:0005763 "mitochondrial small ribosomal
subunit" evidence=IDA] [GO:0006412 "translation" evidence=IEA]
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
InterPro:IPR001971 Pfam:PF00411 GO:GO:0006412 GO:GO:0003735
GO:GO:0005763 GO:GO:0043043 Gene3D:3.30.420.80 HAMAP:MF_01310
InterPro:IPR018102 PANTHER:PTHR11759 PROSITE:PS00054 eggNOG:COG0100
EMBL:BC102297 IPI:IPI00704366 RefSeq:NP_001030250.1
UniGene:Bt.48989 ProteinModelPortal:P82911 IntAct:P82911
STRING:P82911 GeneID:509816 KEGG:bta:509816 CTD:64963
HOGENOM:HOG000111599 HOVERGEN:HBG036124 InParanoid:P82911
OrthoDB:EOG4CZBHG NextBio:20869145 Uniprot:P82911
Length = 197
Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 43/87 (49%), Positives = 57/87 (65%)
Query: 19 GLKFKNLPIMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFKNARKGTNIAAQAAGITIG 78
G KF+ +PI +I+ + NNT + + A SCG EGF+NA+KGT IAAQ AGI
Sbjct: 80 GKKFEEIPIAHIKASYNNTQIHVVSAAHQPLARASCGTEGFRNAKKGTGIAAQTAGIAAA 139
Query: 79 KKALEIGVSSVRINVRGLGPGRLKALE 105
KA GV+ VR+ V+GLGPGRL A++
Sbjct: 140 AKATGKGVTHVRVVVKGLGPGRLSAIK 166
>UNIPROTKB|Q5ZL20 [details] [associations]
symbol:MRPS11 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
InterPro:IPR001971 Pfam:PF00411 GO:GO:0005739 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 Gene3D:3.30.420.80 InterPro:IPR018102
PANTHER:PTHR11759 PROSITE:PS00054 eggNOG:COG0100 CTD:64963
HOGENOM:HOG000111599 HOVERGEN:HBG036124 OrthoDB:EOG4CZBHG
OMA:HIKASHN GeneTree:ENSGT00390000016068 EMBL:AADN02041512
EMBL:AJ719914 IPI:IPI00572943 RefSeq:NP_001005821.1
UniGene:Gga.20084 STRING:Q5ZL20 Ensembl:ENSGALT00000010964
GeneID:415498 KEGG:gga:415498 InParanoid:Q5ZL20 NextBio:20819093
Uniprot:Q5ZL20
Length = 183
Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
Identities = 41/89 (46%), Positives = 55/89 (61%)
Query: 17 FDGLKFKNLPIMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFKNARKGTNIAAQAAGIT 76
+DG ++ +PI +I+ T NNT + + SCG EGF+NA+KGT IAAQ AGI
Sbjct: 64 WDGKTYEEIPIAHIKATYNNTHIQVVSFDNRPFAHTSCGTEGFQNAKKGTAIAAQTAGIA 123
Query: 77 IGKKALEIGVSSVRINVRGLGPGRLKALE 105
KA GV VR+ V+GLGPGR A++
Sbjct: 124 AAVKARGKGVLHVRVMVKGLGPGRKAAIK 152
>UNIPROTKB|D4A0K2 [details] [associations]
symbol:D4A0K2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR001971
Pfam:PF00411 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
Gene3D:3.30.420.80 PANTHER:PTHR11759 OrthoDB:EOG4CZBHG
GeneTree:ENSGT00390000016068 IPI:IPI00197694
Ensembl:ENSRNOT00000004114 OMA:ACASCTE Uniprot:D4A0K2
Length = 191
Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 39/87 (44%), Positives = 55/87 (63%)
Query: 19 GLKFKNLPIMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFKNARKGTNIAAQAAGITIG 78
G+KF+ + I +I+ T NNT + + A SC EGF+NA+KGT IAAQ AGI
Sbjct: 74 GMKFEEVLIAHIKATYNNTQIQVVSATSTSLACASC-TEGFRNAKKGTGIAAQTAGIAAA 132
Query: 79 KKALEIGVSSVRINVRGLGPGRLKALE 105
KA GV+ +R+ V+G+GPGR A++
Sbjct: 133 AKATGKGVTHIRVLVKGMGPGRWSAIK 159
>TIGR_CMR|GSU_2833 [details] [associations]
symbol:GSU_2833 "ribosomal protein S11" species:243231
"Geobacter sulfurreducens PCA" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] InterPro:IPR001971
InterPro:IPR019981 Pfam:PF00411 PIRSF:PIRSF002131 GO:GO:0006412
GO:GO:0005840 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0003735
GO:GO:0019843 Gene3D:3.30.420.80 HAMAP:MF_01310 InterPro:IPR018102
PANTHER:PTHR11759 PROSITE:PS00054 HOGENOM:HOG000111597 KO:K02948
eggNOG:COG0100 ProtClustDB:PRK05309 TIGRFAMs:TIGR03632 OMA:PHNGCRR
RefSeq:NP_953876.1 ProteinModelPortal:Q749B1 SMR:Q749B1
GeneID:2686831 KEGG:gsu:GSU2833 PATRIC:22028511
BioCyc:GSUL243231:GH27-2792-MONOMER Uniprot:Q749B1
Length = 131
Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
Identities = 40/102 (39%), Positives = 59/102 (57%)
Query: 23 KNLP--IMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFKNARKGTNIAAQAAGITIGKK 80
KN+P + +I+ T NNTI++++D G V S G +GFK +RK T AAQ A +K
Sbjct: 16 KNIPNGVAHIQATFNNTIITITDPVGNVVAWSSAGSKGFKGSRKSTPFAAQIAAEECARK 75
Query: 81 ALEIGVSSVRINVRGLGPGRLKALE-IGVSSVRIN-VRGLGP 120
A E G+ SV + V+G G GR AL + + +N +R + P
Sbjct: 76 AQEHGMRSVEVFVKGPGSGRESALRALQAAGFHVNFIRDVTP 117
>TIGR_CMR|DET_0500 [details] [associations]
symbol:DET_0500 "ribosomal protein S11" species:243164
"Dehalococcoides ethenogenes 195" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0015935 "small ribosomal
subunit" evidence=ISS] InterPro:IPR001971 InterPro:IPR019981
Pfam:PF00411 PIRSF:PIRSF002131 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0019843
Gene3D:3.30.420.80 HAMAP:MF_01310 InterPro:IPR018102
PANTHER:PTHR11759 PROSITE:PS00054 HOGENOM:HOG000111597 KO:K02948
eggNOG:COG0100 ProtClustDB:PRK05309 TIGRFAMs:TIGR03632 OMA:PHNGCRR
RefSeq:YP_181244.1 ProteinModelPortal:Q3Z955 SMR:Q3Z955
STRING:Q3Z955 GeneID:3230222 KEGG:det:DET0500 PATRIC:21608069
BioCyc:DETH243164:GJNF-500-MONOMER Uniprot:Q3Z955
Length = 130
Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
Identities = 37/93 (39%), Positives = 54/93 (58%)
Query: 30 IRVTKNNTILSLSDAKGVVKLLRSCGMEGFKNARKGTNIAAQAAGITIGKKALEIGVSSV 89
++ T NNTI++L+D +G V SCG GFK +RKGT AAQ A +KA E G+ V
Sbjct: 24 VQATFNNTIVTLTDLQGNVIAWASCGTAGFKGSRKGTPYAAQMAAQAAARKAAESGLRQV 83
Query: 90 RINVRGLGPGRLKALE-IGVSSVRIN-VRGLGP 120
+ V+G G GR A+ + S + + +R + P
Sbjct: 84 EVLVKGPGSGREAAIRSLQASGINVTAIRDVTP 116
>TIGR_CMR|CHY_2283 [details] [associations]
symbol:CHY_2283 "ribosomal protein S11" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR001971 InterPro:IPR019981
Pfam:PF00411 PIRSF:PIRSF002131 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 Gene3D:3.30.420.80 HAMAP:MF_01310 InterPro:IPR018102
PANTHER:PTHR11759 PROSITE:PS00054 HOGENOM:HOG000111597 KO:K02948
eggNOG:COG0100 ProtClustDB:PRK05309 TIGRFAMs:TIGR03632 OMA:PHNGCRR
RefSeq:YP_361092.1 ProteinModelPortal:Q3A9U2 SMR:Q3A9U2
STRING:Q3A9U2 GeneID:3728304 KEGG:chy:CHY_2283 PATRIC:21277637
BioCyc:CHYD246194:GJCN-2282-MONOMER Uniprot:Q3A9U2
Length = 129
Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 32/78 (41%), Positives = 47/78 (60%)
Query: 27 IMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFKNARKGTNIAAQAAGITIGKKALEIGV 86
+ +I+ T NNTI++++D +G S G GF+ RKGT AAQ A K+A+E GV
Sbjct: 20 VAHIKSTFNNTIVTITDPQGNTLSWASAGTVGFEGTRKGTPFAAQLAAEKAAKEAMEFGV 79
Query: 87 SSVRINVRGLGPGRLKAL 104
+V + V+G G GR A+
Sbjct: 80 KTVEVYVKGPGAGREAAI 97
>TIGR_CMR|CBU_0261 [details] [associations]
symbol:CBU_0261 "ribosomal protein S11" species:227377
"Coxiella burnetii RSA 493" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] InterPro:IPR001971 InterPro:IPR019981
Pfam:PF00411 PIRSF:PIRSF002131 GO:GO:0006412 GO:GO:0005840
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0003735 GO:GO:0019843
Gene3D:3.30.420.80 HAMAP:MF_01310 InterPro:IPR018102
PANTHER:PTHR11759 PROSITE:PS00054 HOGENOM:HOG000111597 KO:K02948
eggNOG:COG0100 ProtClustDB:PRK05309 TIGRFAMs:TIGR03632 OMA:PHNGCRR
RefSeq:NP_819305.1 ProteinModelPortal:Q83EQ4 SMR:Q83EQ4
GeneID:1208142 KEGG:cbu:CBU_0261 PATRIC:17929215
BioCyc:CBUR227377:GJ7S-268-MONOMER Uniprot:Q83EQ4
Length = 123
Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 35/90 (38%), Positives = 52/90 (57%)
Query: 27 IMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFKNARKGTNIAAQAAGITIGKKALE-IG 85
I +I+ T NNT++S+SD +G V RS G GFK +RKGT AQ A +G+ A +
Sbjct: 13 IAHIKATFNNTMISVSDPQGNVLCFRSAGGSGFKGSRKGTPYGAQMASEEVGRLARDNFD 72
Query: 86 VSSVRINVRGLGPGRLKALEIGVSSVRINV 115
+ + + V+G G GR A+ G+ S + V
Sbjct: 73 MRRIAVRVKGPGAGRDSAIR-GLRSAGLEV 101
>TIGR_CMR|BA_0136 [details] [associations]
symbol:BA_0136 "ribosomal protein S11" species:198094
"Bacillus anthracis str. Ames" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR001971 InterPro:IPR019981 Pfam:PF00411
PIRSF:PIRSF002131 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 Gene3D:3.30.420.80 HAMAP:MF_01310 InterPro:IPR018102
PANTHER:PTHR11759 PROSITE:PS00054 HOGENOM:HOG000111597 KO:K02948
eggNOG:COG0100 ProtClustDB:PRK05309 TIGRFAMs:TIGR03632
RefSeq:NP_842704.1 RefSeq:YP_016741.1 RefSeq:YP_026422.1
ProteinModelPortal:Q81VQ5 SMR:Q81VQ5 DNASU:1087053
EnsemblBacteria:EBBACT00000008430 EnsemblBacteria:EBBACT00000018043
EnsemblBacteria:EBBACT00000022718 GeneID:1087053 GeneID:2818235
GeneID:2851698 KEGG:ban:BA_0136 KEGG:bar:GBAA_0136 KEGG:bat:BAS0136
OMA:PHNGCRR BioCyc:BANT260799:GJAJ-147-MONOMER
BioCyc:BANT261594:GJ7F-149-MONOMER Uniprot:Q81VQ5
Length = 129
Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
Identities = 34/84 (40%), Positives = 49/84 (58%)
Query: 23 KNLP--IMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFKNARKGTNIAAQAAGITIGKK 80
KN+ + +IR T NNTI++L+D G S G GF+ +RK T AAQ A T K
Sbjct: 14 KNIEAGVAHIRSTFNNTIVTLTDTHGNALSWSSAGALGFRGSRKSTPFAAQMAAETAAKA 73
Query: 81 ALEIGVSSVRINVRGLGPGRLKAL 104
A+E G+ ++ + V+G G GR A+
Sbjct: 74 AMEHGLKTLEVTVKGPGAGREAAI 97
>UNIPROTKB|P46746 [details] [associations]
symbol:RPS11 "Ribosomal protein S11, mitochondrial"
species:3111 "Prototheca wickerhamii" [GO:0005763 "mitochondrial
small ribosomal subunit" evidence=ISS] InterPro:IPR001971
InterPro:IPR019981 Pfam:PF00411 PIRSF:PIRSF002131 GO:GO:0006412
GO:GO:0003735 GO:GO:0005763 Gene3D:3.30.420.80 HAMAP:MF_01310
InterPro:IPR018102 PANTHER:PTHR11759 PROSITE:PS00054 EMBL:U02970
PIR:T11926 RefSeq:NP_042257.1 ProteinModelPortal:P46746
GeneID:802140 Uniprot:P46746
Length = 128
Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 30/82 (36%), Positives = 49/82 (59%)
Query: 23 KNLPIMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFKNARKGTNIAAQAAGITIGKKAL 82
K I++I+ T NNT+++L+D +G + S G GFKN+RK T A+ AA + KA
Sbjct: 15 KKSGIVHIQSTTNNTLITLTDLEGNTQFFVSAGTLGFKNSRKSTVYASGAAAEALASKAF 74
Query: 83 EIGVSSVRINVRGLGPGRLKAL 104
G ++ + ++GLG G+ A+
Sbjct: 75 NEGYRTIIVKIKGLGYGKKSAI 96
>TIGR_CMR|SPO_0510 [details] [associations]
symbol:SPO_0510 "ribosomal protein S11" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] InterPro:IPR001971 InterPro:IPR019981
Pfam:PF00411 PIRSF:PIRSF002131 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 Gene3D:3.30.420.80 HAMAP:MF_01310 InterPro:IPR018102
PANTHER:PTHR11759 PROSITE:PS00054 HOGENOM:HOG000111597 KO:K02948
eggNOG:COG0100 ProtClustDB:PRK05309 TIGRFAMs:TIGR03632 OMA:PHNGCRR
RefSeq:YP_165772.1 ProteinModelPortal:Q5LW33 SMR:Q5LW33
GeneID:3195723 KEGG:sil:SPO0510 PATRIC:23374283 Uniprot:Q5LW33
Length = 130
Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
Identities = 35/98 (35%), Positives = 54/98 (55%)
Query: 23 KNLP--IMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFKNARKGTNIAAQAAGITIGKK 80
KN+ + ++ T NNT + +SD +G S G GFK +RK T AAQ A G+K
Sbjct: 15 KNIASGVAHVNSTFNNTKILISDVQGNAISWSSAGTMGFKGSRKSTPYAAQLAAEDAGRK 74
Query: 81 ALEIGVSSVRINVRGLGPGRLKALEIGVSSVRINVRGL 118
A + GV ++ + V+G G GR AL +++V N+ +
Sbjct: 75 AQDHGVKTLEVEVQGPGSGRESALR-ALAAVGFNITSI 111
>UNIPROTKB|O06326 [details] [associations]
symbol:rpsK "30S ribosomal protein S11" species:1773
"Mycobacterium tuberculosis" [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0040007 "growth" evidence=IMP] InterPro:IPR001971
InterPro:IPR019981 Pfam:PF00411 PIRSF:PIRSF002131 GO:GO:0005886
GO:GO:0040007 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842583 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 GO:GO:0019843 Gene3D:3.30.420.80 HAMAP:MF_01310
InterPro:IPR018102 PANTHER:PTHR11759 PROSITE:PS00054
HOGENOM:HOG000111597 KO:K02948 eggNOG:COG0100 ProtClustDB:PRK05309
TIGRFAMs:TIGR03632 OMA:PHNGCRR PIR:H70565 RefSeq:NP_217976.1
RefSeq:NP_338091.1 RefSeq:YP_006516948.1 ProteinModelPortal:O06326
SMR:O06326 PRIDE:O06326 EnsemblBacteria:EBMYCT00000002698
EnsemblBacteria:EBMYCT00000070198 GeneID:13317066 GeneID:887524
GeneID:922944 KEGG:mtc:MT3566 KEGG:mtu:Rv3459c KEGG:mtv:RVBD_3459c
PATRIC:18129569 TubercuList:Rv3459c Uniprot:O06326
Length = 139
Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 35/84 (41%), Positives = 49/84 (58%)
Query: 23 KNLP--IMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFKNARKGTNIAAQAAGITIGKK 80
KN+P +I+ T NNTI++++D +G V S G GFK +RK T AAQ A +K
Sbjct: 24 KNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHVGFKGSRKSTPFAAQLAAENAARK 83
Query: 81 ALEIGVSSVRINVRGLGPGRLKAL 104
A + GV V + V+G G GR A+
Sbjct: 84 AQDHGVRKVDVFVKGPGSGRETAI 107
>TIGR_CMR|CPS_0624 [details] [associations]
symbol:CPS_0624 "ribosomal protein S11" species:167879
"Colwellia psychrerythraea 34H" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0015935 "small ribosomal subunit"
evidence=ISS] [GO:0042254 "ribosome biogenesis" evidence=ISS]
InterPro:IPR001971 InterPro:IPR019981 Pfam:PF00411
PIRSF:PIRSF002131 GO:GO:0006412 GO:GO:0005840 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0003735 GO:GO:0019843
Gene3D:3.30.420.80 HAMAP:MF_01310 InterPro:IPR018102
PANTHER:PTHR11759 PROSITE:PS00054 HOGENOM:HOG000111597 KO:K02948
eggNOG:COG0100 ProtClustDB:PRK05309 TIGRFAMs:TIGR03632 OMA:PHNGCRR
RefSeq:YP_267374.1 ProteinModelPortal:Q488Z0 SMR:Q488Z0
STRING:Q488Z0 GeneID:3518852 KEGG:cps:CPS_0624 PATRIC:21464575
BioCyc:CPSY167879:GI48-711-MONOMER Uniprot:Q488Z0
Length = 129
Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 32/94 (34%), Positives = 52/94 (55%)
Query: 29 NIRVTKNNTILSLSDAKGVVKLLRSCGMEGFKNARKGTNIAAQAAGITIGKKALEIGVSS 88
+I + NNTI++L+D +G + G GF+ +RK T AAQ A G A E G+ +
Sbjct: 22 HIHASFNNTIVTLTDRQGNALSWATAGGSGFRGSRKSTPFAAQVAADRAGAVAKEFGLKN 81
Query: 89 VRINVRGLGPGRLKALE-IGVSSVRI-NVRGLGP 120
+ + V+G GPGR A+ + + +I N+ + P
Sbjct: 82 IEVFVKGPGPGRESAIRALNAAGFKITNITDVTP 115
>UNIPROTKB|P66367 [details] [associations]
symbol:rpsK "30S ribosomal protein S11" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003735
"structural constituent of ribosome" evidence=ISS] [GO:0006412
"translation" evidence=ISS] InterPro:IPR001971 InterPro:IPR019981
Pfam:PF00411 PIRSF:PIRSF002131 GO:GO:0006412 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005840 GO:GO:0003735 GO:GO:0019843
Gene3D:3.30.420.80 HAMAP:MF_01310 InterPro:IPR018102
PANTHER:PTHR11759 PROSITE:PS00054 KO:K02948 eggNOG:COG0100
ProtClustDB:PRK05309 TIGRFAMs:TIGR03632 OMA:PHNGCRR PIR:C82061
RefSeq:NP_232201.1 ProteinModelPortal:P66367 SMR:P66367
DNASU:2615590 GeneID:2615590 KEGG:vch:VC2573 PATRIC:20084172
Uniprot:P66367
Length = 129
Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 26/74 (35%), Positives = 43/74 (58%)
Query: 27 IMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFKNARKGTNIAAQAAGITIGKKALEIGV 86
+ +I + NNTI++++D +G + G GF+ +RK T AAQ A + A E G+
Sbjct: 20 VAHIHASFNNTIVTITDRQGNALAWATAGGSGFRGSRKSTPFAAQVAAERCAEMAKEYGL 79
Query: 87 SSVRINVRGLGPGR 100
++ + V+G GPGR
Sbjct: 80 KNLEVMVKGPGPGR 93
>TIGR_CMR|VC_2573 [details] [associations]
symbol:VC_2573 "ribosomal protein S11" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR001971 InterPro:IPR019981 Pfam:PF00411
PIRSF:PIRSF002131 GO:GO:0006412 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005840 GO:GO:0003735 GO:GO:0019843
Gene3D:3.30.420.80 HAMAP:MF_01310 InterPro:IPR018102
PANTHER:PTHR11759 PROSITE:PS00054 KO:K02948 eggNOG:COG0100
ProtClustDB:PRK05309 TIGRFAMs:TIGR03632 OMA:PHNGCRR PIR:C82061
RefSeq:NP_232201.1 ProteinModelPortal:P66367 SMR:P66367
DNASU:2615590 GeneID:2615590 KEGG:vch:VC2573 PATRIC:20084172
Uniprot:P66367
Length = 129
Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 26/74 (35%), Positives = 43/74 (58%)
Query: 27 IMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFKNARKGTNIAAQAAGITIGKKALEIGV 86
+ +I + NNTI++++D +G + G GF+ +RK T AAQ A + A E G+
Sbjct: 20 VAHIHASFNNTIVTITDRQGNALAWATAGGSGFRGSRKSTPFAAQVAAERCAEMAKEYGL 79
Query: 87 SSVRINVRGLGPGR 100
++ + V+G GPGR
Sbjct: 80 KNLEVMVKGPGPGR 93
>TIGR_CMR|SO_0254 [details] [associations]
symbol:SO_0254 "ribosomal protein S11" species:211586
"Shewanella oneidensis MR-1" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR001971 InterPro:IPR019981 Pfam:PF00411
PIRSF:PIRSF002131 GO:GO:0006412 GO:GO:0005840 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0003735 GO:GO:0019843
Gene3D:3.30.420.80 HAMAP:MF_01310 InterPro:IPR018102
PANTHER:PTHR11759 PROSITE:PS00054 HOGENOM:HOG000111597 KO:K02948
eggNOG:COG0100 ProtClustDB:PRK05309 TIGRFAMs:TIGR03632 OMA:PHNGCRR
RefSeq:NP_715894.1 ProteinModelPortal:P59375 SMR:P59375
PRIDE:P59375 GeneID:1168137 KEGG:son:SO_0254 PATRIC:23520201
Uniprot:P59375
Length = 130
Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 27/76 (35%), Positives = 44/76 (57%)
Query: 29 NIRVTKNNTILSLSDAKGVVKLLRSCGMEGFKNARKGTNIAAQAAGITIGKKALEIGVSS 88
+I + NNTI++++D +G + G GF+ +RK T AAQ A G A + G+ +
Sbjct: 23 HIHASFNNTIVTITDRQGNALSWATSGGSGFRGSRKSTPFAAQVAAERAGAAAQDYGLKN 82
Query: 89 VRINVRGLGPGRLKAL 104
+ + V+G GPGR A+
Sbjct: 83 LEVFVKGPGPGRESAI 98
>UNIPROTKB|P0A7R9 [details] [associations]
symbol:rpsK species:83333 "Escherichia coli K-12"
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA]
[GO:0070181 "SSU rRNA binding" evidence=IDA] [GO:0003735
"structural constituent of ribosome" evidence=IEA;IDA] [GO:0006412
"translation" evidence=IEA] InterPro:IPR001971 InterPro:IPR019981
Pfam:PF00411 PIRSF:PIRSF002131 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0006412
EMBL:U18997 GO:GO:0003735 PDB:3J00 PDBsum:3J00 GO:GO:0070181
PDB:3FIH PDB:3IZV PDB:3IZW PDBsum:3FIH PDBsum:3IZV PDBsum:3IZW
GO:GO:0022627 PDB:3SFS PDB:3UOQ PDBsum:3SFS PDBsum:3UOQ EMBL:X02543
Gene3D:3.30.420.80 HAMAP:MF_01310 InterPro:IPR018102
PANTHER:PTHR11759 PROSITE:PS00054 KO:K02948 eggNOG:COG0100 PDB:4GAS
PDB:4GD1 PDBsum:4GAS PDBsum:4GD1 PDB:1M5G PDB:1P6G PDB:1P87
PDB:1VS5 PDB:1VS7 PDB:2AVY PDB:2AW7 PDB:2GY9 PDB:2GYB PDB:2I2P
PDB:2I2U PDB:2QAL PDB:2QAN PDB:2QB9 PDB:2QBB PDB:2QBD PDB:2QBF
PDB:2QBH PDB:2QBJ PDB:2QOU PDB:2QOW PDB:2QOY PDB:2QP0 PDB:2VHO
PDB:2VHP PDB:2WWL PDB:2YKR PDB:2Z4K PDB:2Z4M PDB:3DF1 PDB:3DF3
PDB:3E1A PDB:3E1C PDB:3I1M PDB:3I1O PDB:3I1Q PDB:3I1S PDB:3I1Z
PDB:3I21 PDB:3J0U PDB:3J0V PDB:3J0X PDB:3J0Z PDB:3J10 PDB:3J13
PDB:3J18 PDB:3KC4 PDB:3OAQ PDB:3OAR PDB:3OFA PDB:3OFB PDB:3OFO
PDB:3OFP PDB:3OFX PDB:3OFY PDB:3OR9 PDB:3ORA PDB:4A2I PDB:4ADV
PDB:4GAQ PDB:4GD2 PDBsum:1M5G PDBsum:1P6G PDBsum:1P87 PDBsum:1VS5
PDBsum:1VS7 PDBsum:2AVY PDBsum:2AW7 PDBsum:2GY9 PDBsum:2GYB
PDBsum:2I2P PDBsum:2I2U PDBsum:2QAL PDBsum:2QAN PDBsum:2QB9
PDBsum:2QBB PDBsum:2QBD PDBsum:2QBF PDBsum:2QBH PDBsum:2QBJ
PDBsum:2QOU PDBsum:2QOW PDBsum:2QOY PDBsum:2QP0 PDBsum:2VHO
PDBsum:2VHP PDBsum:2WWL PDBsum:2YKR PDBsum:2Z4K PDBsum:2Z4M
PDBsum:3DF1 PDBsum:3DF3 PDBsum:3E1A PDBsum:3E1C PDBsum:3I1M
PDBsum:3I1O PDBsum:3I1Q PDBsum:3I1S PDBsum:3I1Z PDBsum:3I21
PDBsum:3J0U PDBsum:3J0V PDBsum:3J0X PDBsum:3J0Z PDBsum:3J10
PDBsum:3J13 PDBsum:3J18 PDBsum:3KC4 PDBsum:3OAQ PDBsum:3OAR
PDBsum:3OFA PDBsum:3OFB PDBsum:3OFO PDBsum:3OFP PDBsum:3OFX
PDBsum:3OFY PDBsum:3OR9 PDBsum:3ORA PDBsum:4A2I PDBsum:4ADV
PDBsum:4GAQ PDBsum:4GD2 ProtClustDB:PRK05309 TIGRFAMs:TIGR03632
OMA:PHNGCRR PIR:B23807 RefSeq:NP_417756.1 RefSeq:YP_492135.1
ProteinModelPortal:P0A7R9 SMR:P0A7R9 DIP:DIP-47838N IntAct:P0A7R9
MINT:MINT-1232137 PaxDb:P0A7R9 PRIDE:P0A7R9
EnsemblBacteria:EBESCT00000001211 EnsemblBacteria:EBESCT00000016522
GeneID:12934439 GeneID:947792 KEGG:ecj:Y75_p3879 KEGG:eco:b3297
PATRIC:32122026 EchoBASE:EB0903 EcoGene:EG10910
HOGENOM:HOG000111598 BioCyc:EcoCyc:EG10910-MONOMER
BioCyc:ECOL316407:JW3259-MONOMER EvolutionaryTrace:P0A7R9
Genevestigator:P0A7R9 Uniprot:P0A7R9
Length = 129
Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 29/96 (30%), Positives = 50/96 (52%)
Query: 27 IMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFKNARKGTNIAAQAAGITIGKKALEIGV 86
+ +I + NNTI++++D +G + G GF+ +RK T AAQ A E G+
Sbjct: 20 VAHIHASFNNTIVTITDRQGNALGWATAGGSGFRGSRKSTPFAAQVAAERCADAVKEYGI 79
Query: 87 SSVRINVRGLGPGRLKALE-IGVSSVRI-NVRGLGP 120
++ + V+G GPGR + + + RI N+ + P
Sbjct: 80 KNLEVMVKGPGPGRESTIRALNAAGFRITNITDVTP 115
>UNIPROTKB|P0C462 [details] [associations]
symbol:rps11 "30S ribosomal protein S11, chloroplastic"
species:4530 "Oryza sativa" [GO:0009536 "plastid" evidence=IC]
InterPro:IPR001971 InterPro:IPR019981 Pfam:PF00411
PIRSF:PIRSF002131 GO:GO:0009507 GO:GO:0009536 GO:GO:0006412
GO:GO:0005840 EMBL:AY522331 GO:GO:0003735 GO:GO:0019843
ProtClustDB:CHL00041 Gene3D:3.30.420.80 HAMAP:MF_01310
InterPro:IPR018102 PANTHER:PTHR11759 PROSITE:PS00054
RefSeq:NP_039418.1 ProteinModelPortal:P0C462 SMR:P0C462
GeneID:3131435 KEGG:osa:3131435 Gramene:P0C462 HOGENOM:HOG000111597
KO:K02948 Genevestigator:P0C462 Uniprot:P0C462
Length = 143
Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 30/96 (31%), Positives = 54/96 (56%)
Query: 27 IMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFKNARKGTNIAAQAAGITIGKKALEIGV 86
+++++ + NNTI++++D +G V S G GFK++RK + A Q + + +G+
Sbjct: 37 VIHVQASFNNTIITVTDPQGRVVFWSSAGTCGFKSSRKASPYAGQRTAVDAIRT---VGL 93
Query: 87 SSVRINVRGLGPGRLKALE-IGVSSVRIN-VRGLGP 120
+ V+G G GR AL I S VR++ +R + P
Sbjct: 94 QRAEVMVKGAGSGRDAALRAIAKSGVRLSCIRDVTP 129
>UNIPROTKB|P0C463 [details] [associations]
symbol:rps11 "30S ribosomal protein S11, chloroplastic"
species:39946 "Oryza sativa Indica Group" [GO:0009536 "plastid"
evidence=IC] InterPro:IPR001971 InterPro:IPR019981 Pfam:PF00411
PIRSF:PIRSF002131 GO:GO:0009507 GO:GO:0009536 GO:GO:0006412
GO:GO:0005840 EMBL:AY522329 GO:GO:0003735 GO:GO:0019843
ProtClustDB:CHL00041 Gene3D:3.30.420.80 HAMAP:MF_01310
InterPro:IPR018102 PANTHER:PTHR11759 PROSITE:PS00054
RefSeq:YP_654236.1 ProteinModelPortal:P0C463 SMR:P0C463
GeneID:4126926 Gramene:P0C463 Uniprot:P0C463
Length = 143
Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 30/96 (31%), Positives = 54/96 (56%)
Query: 27 IMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFKNARKGTNIAAQAAGITIGKKALEIGV 86
+++++ + NNTI++++D +G V S G GFK++RK + A Q + + +G+
Sbjct: 37 VIHVQASFNNTIITVTDPQGRVVFWSSAGTCGFKSSRKASPYAGQRTAVDAIRT---VGL 93
Query: 87 SSVRINVRGLGPGRLKALE-IGVSSVRIN-VRGLGP 120
+ V+G G GR AL I S VR++ +R + P
Sbjct: 94 QRAEVMVKGAGSGRDAALRAIAKSGVRLSCIRDVTP 129
>UNIPROTKB|P0C464 [details] [associations]
symbol:rps11 "30S ribosomal protein S11, chloroplastic"
species:39947 "Oryza sativa Japonica Group" [GO:0009536 "plastid"
evidence=IC] InterPro:IPR001971 InterPro:IPR019981 Pfam:PF00411
PIRSF:PIRSF002131 GO:GO:0009507 GO:GO:0009536 GO:GO:0006412
GO:GO:0005840 EMBL:X15901 EMBL:AY522330 GenomeReviews:AY522330_GR
GO:GO:0003735 GO:GO:0019843 ProtClustDB:CHL00041 Gene3D:3.30.420.80
HAMAP:MF_01310 InterPro:IPR018102 PANTHER:PTHR11759 PROSITE:PS00054
RefSeq:NP_039418.1 GeneID:3131435 KEGG:osa:3131435 KO:K02948
PIR:JQ0259 ProteinModelPortal:P0C464 SMR:P0C464 STRING:P0C464
EnsemblPlants:LOC_Os04g16838.1 EnsemblPlants:LOC_Os10g21332.1
EnsemblPlants:LOC_Osp1g00670.1 Gramene:P0C464 eggNOG:COG0100
OMA:TSAGACN Uniprot:P0C464
Length = 143
Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 30/96 (31%), Positives = 54/96 (56%)
Query: 27 IMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFKNARKGTNIAAQAAGITIGKKALEIGV 86
+++++ + NNTI++++D +G V S G GFK++RK + A Q + + +G+
Sbjct: 37 VIHVQASFNNTIITVTDPQGRVVFWSSAGTCGFKSSRKASPYAGQRTAVDAIRT---VGL 93
Query: 87 SSVRINVRGLGPGRLKALE-IGVSSVRIN-VRGLGP 120
+ V+G G GR AL I S VR++ +R + P
Sbjct: 94 QRAEVMVKGAGSGRDAALRAIAKSGVRLSCIRDVTP 129
>UNIPROTKB|Q6ENE1 [details] [associations]
symbol:rps11 "30S ribosomal protein S11, chloroplastic"
species:4536 "Oryza nivara" [GO:0009536 "plastid" evidence=IC]
InterPro:IPR001971 InterPro:IPR019981 Pfam:PF00411
PIRSF:PIRSF002131 GO:GO:0009507 GO:GO:0009536 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 GO:GO:0019843 EMBL:AP006728
RefSeq:YP_052782.1 ProteinModelPortal:Q6ENE1 SMR:Q6ENE1
GeneID:2885931 Gramene:Q6ENE1 ProtClustDB:CHL00041
Gene3D:3.30.420.80 HAMAP:MF_01310 InterPro:IPR018102
PANTHER:PTHR11759 PROSITE:PS00054 Uniprot:Q6ENE1
Length = 143
Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 30/96 (31%), Positives = 54/96 (56%)
Query: 27 IMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFKNARKGTNIAAQAAGITIGKKALEIGV 86
+++++ + NNTI++++D +G V S G GFK++RK + A Q + + +G+
Sbjct: 37 VIHVQASFNNTIITVTDPQGRVVFWSSAGTCGFKSSRKASPYAGQRTAVDAIRT---VGL 93
Query: 87 SSVRINVRGLGPGRLKALE-IGVSSVRIN-VRGLGP 120
+ V+G G GR AL I S VR++ +R + P
Sbjct: 94 QRAEVMVKGAGSGRDAALRAIAKSGVRLSCIRDVTP 129
>TAIR|locus:2826195 [details] [associations]
symbol:NFD3 "NUCLEAR FUSION DEFECTIVE 3" species:3702
"Arabidopsis thaliana" [GO:0003735 "structural constituent of
ribosome" evidence=IEA;ISS] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA;ISS] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0022627 "cytosolic small ribosomal subunit"
evidence=ISS] [GO:0006354 "DNA-dependent transcription, elongation"
evidence=RCA] [GO:0009220 "pyrimidine ribonucleotide biosynthetic
process" evidence=RCA] InterPro:IPR001971 Pfam:PF00411
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 Gene3D:3.30.420.80 PANTHER:PTHR11759 eggNOG:COG0100
EMBL:AY063845 EMBL:AY117289 IPI:IPI00528174 RefSeq:NP_564385.1
UniGene:At.24108 ProteinModelPortal:Q8VZT8 SMR:Q8VZT8 IntAct:Q8VZT8
STRING:Q8VZT8 PaxDb:Q8VZT8 PRIDE:Q8VZT8 EnsemblPlants:AT1G31817.1
GeneID:840071 KEGG:ath:AT1G31817 TAIR:At1g31817
HOGENOM:HOG000150657 InParanoid:Q8VZT8 OMA:RRTAGIF PhylomeDB:Q8VZT8
ProtClustDB:CLSN2914927 ArrayExpress:Q8VZT8 Genevestigator:Q8VZT8
Uniprot:Q8VZT8
Length = 314
Score = 124 (48.7 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 27/73 (36%), Positives = 44/73 (60%)
Query: 24 NLPIMNIRVTKNNTILSLSDAKGVVKLLRSCG-MEGFKNARKGTNIAAQAAGITIGKKAL 82
N I++I++ +NNT ++++D+KG VK + G + K RK TN A A IG++A
Sbjct: 192 NADIIHIKMLRNNTFVTVTDSKGNVKCKATSGSLPDLKGGRKMTNYTADATAENIGRRAK 251
Query: 83 EIGVSSVRINVRG 95
+G+ SV + V G
Sbjct: 252 AMGLKSVVVKVNG 264
>TIGR_CMR|CJE_1765 [details] [associations]
symbol:CJE_1765 "ribosomal protein S11" species:195099
"Campylobacter jejuni RM1221" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0042254 "ribosome biogenesis"
evidence=ISS] InterPro:IPR001971 InterPro:IPR019981 Pfam:PF00411
PIRSF:PIRSF002131 GO:GO:0006412 GO:GO:0005840 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0003735 GO:GO:0019843
Gene3D:3.30.420.80 HAMAP:MF_01310 InterPro:IPR018102
PANTHER:PTHR11759 PROSITE:PS00054 HOGENOM:HOG000111597 KO:K02948
eggNOG:COG0100 ProtClustDB:PRK05309 TIGRFAMs:TIGR03632 OMA:PHNGCRR
RefSeq:YP_179737.1 ProteinModelPortal:Q5HSJ8 SMR:Q5HSJ8
STRING:Q5HSJ8 GeneID:3232392 KEGG:cjr:CJE1765 PATRIC:20045340
BioCyc:CJEJ195099:GJC0-1795-MONOMER Uniprot:Q5HSJ8
Length = 130
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 33/85 (38%), Positives = 46/85 (54%)
Query: 23 KNLP--IMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFKNARKGTNIAAQAAGITIGKK 80
KN+ I+ I T NNT+++++D G S G GFK ++K T AAQ A K
Sbjct: 14 KNIAKGIVYISATFNNTMVTVTDEMGNAIAWSSAGGLGFKGSKKSTPYAAQQAVEDALNK 73
Query: 81 ALEIGVSSVRINVRGLGPGRLKALE 105
A E G+ V I V+G G GR A++
Sbjct: 74 AKEHGIKEVGIKVQGPGSGRETAVK 98
>TIGR_CMR|ECH_0431 [details] [associations]
symbol:ECH_0431 "ribosomal protein S11" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0015935 "small ribosomal
subunit" evidence=ISS] InterPro:IPR001971 InterPro:IPR019981
Pfam:PF00411 PIRSF:PIRSF002131 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 Gene3D:3.30.420.80 HAMAP:MF_01310 PANTHER:PTHR11759
PROSITE:PS00054 HOGENOM:HOG000111597 KO:K02948 eggNOG:COG0100
ProtClustDB:PRK05309 TIGRFAMs:TIGR03632 OMA:PHNGCRR
RefSeq:YP_507249.1 ProteinModelPortal:Q2GH34 STRING:Q2GH34
GeneID:3926965 KEGG:ech:ECH_0431 PATRIC:20576339
BioCyc:ECHA205920:GJNR-432-MONOMER Uniprot:Q2GH34
Length = 126
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 31/93 (33%), Positives = 48/93 (51%)
Query: 27 IMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFKNARKGTNIAAQAAGITIGKKALEI-G 85
++ I T NN I++++D +G + S G GFK ++K T AAQ K +E G
Sbjct: 16 VVYIHATYNNIIVTVTDQQGHSLICTSAGACGFKGSKKATPYAAQETASHAVKTVVEQNG 75
Query: 86 VSSVRINVRGLGPGRLKALEIGVSSVRINVRGL 118
+ +V I V G G GR A+ V + +NV +
Sbjct: 76 MKTVSIKVSGPGAGRESAIR-AVQACNLNVTSI 107
>TIGR_CMR|NSE_0288 [details] [associations]
symbol:NSE_0288 "ribosomal protein S11" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0015935 "small ribosomal
subunit" evidence=ISS] InterPro:IPR001971 InterPro:IPR019981
Pfam:PF00411 PIRSF:PIRSF002131 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 GO:GO:0019843 EMBL:CP000237 GenomeReviews:CP000237_GR
Gene3D:3.30.420.80 HAMAP:MF_01310 InterPro:IPR018102
PANTHER:PTHR11759 PROSITE:PS00054 HOGENOM:HOG000111597 KO:K02948
eggNOG:COG0100 OMA:TSAGACN ProtClustDB:PRK05309 TIGRFAMs:TIGR03632
RefSeq:YP_506179.1 ProteinModelPortal:Q2GEB7 STRING:Q2GEB7
GeneID:3931720 KEGG:nse:NSE_0288 PATRIC:22680669
BioCyc:NSEN222891:GHFU-315-MONOMER Uniprot:Q2GEB7
Length = 120
Score = 110 (43.8 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 27/76 (35%), Positives = 42/76 (55%)
Query: 29 NIRVTKNNTILSLSDAKGVVKLLRSCGMEGFKNARKGTNIAAQAAGITIGKKALEIGVSS 88
++ VT NN +S++D +G V+ S G GFK +K T AAQ+ T+ K IG+
Sbjct: 13 HVIVTFNNVYISVTDHQGNVQGWASSGSVGFKGNKKSTAYAAQSVATTLMTKLKRIGLKI 72
Query: 89 VRINVRGLGPGRLKAL 104
+ +++ G P R AL
Sbjct: 73 LNVHLSGSNPIREAAL 88
>TIGR_CMR|APH_0302 [details] [associations]
symbol:APH_0302 "ribosomal protein S11" species:212042
"Anaplasma phagocytophilum HZ" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0015935 "small ribosomal subunit"
evidence=ISS] InterPro:IPR001971 InterPro:IPR019981 Pfam:PF00411
PIRSF:PIRSF002131 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0019843
Gene3D:3.30.420.80 HAMAP:MF_01310 PANTHER:PTHR11759 PROSITE:PS00054
HOGENOM:HOG000111597 KO:K02948 eggNOG:COG0100 OMA:TSAGACN
RefSeq:YP_504914.1 ProteinModelPortal:Q2GL37 STRING:Q2GL37
GeneID:3931045 KEGG:aph:APH_0302 PATRIC:20949178
ProtClustDB:PRK05309 BioCyc:APHA212042:GHPM-332-MONOMER
TIGRFAMs:TIGR03632 Uniprot:Q2GL37
Length = 124
Score = 108 (43.1 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 30/101 (29%), Positives = 52/101 (51%)
Query: 21 KFKNLPIMNIRV--TKNNTILSLSDAKGVVKLLRSCGMEGFKNARKGTNIAAQAAGITIG 78
K +N+ + + + T NN I++++D +G V + S G FK ++K T AAQ
Sbjct: 6 KKRNVVVGRVHICATYNNVIVTIADQQGHVLVTTSAGACNFKGSKKSTPYAAQETVARAV 65
Query: 79 KKALEI-GVSSVRINVRGLGPGRLKALEIGVSSVRINVRGL 118
K +E G+ +V + + G G GR A+ V + +NV +
Sbjct: 66 KAVIERNGMKTVSVCISGPGAGREAAIR-AVQACNLNVTSI 105
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.140 0.391 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 123 123 0.00091 102 3 11 22 0.38 31
29 0.50 32
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 34
No. of states in DFA: 448 (48 KB)
Total size of DFA: 83 KB (2065 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 11.10u 0.08s 11.18t Elapsed: 00:00:01
Total cpu time: 11.10u 0.08s 11.18t Elapsed: 00:00:01
Start: Thu Aug 15 10:51:09 2013 End: Thu Aug 15 10:51:10 2013