RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13610
(123 letters)
>d2qalk1 c.55.4.1 (K:12-128) Ribosomal protein S11 {Escherichia coli
[TaxId: 562]}
Length = 117
Score = 70.3 bits (172), Expect = 2e-17
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 23 KNLP--IMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFKNARKGTNIAAQAAGITIGKK 80
K + + +I + NNTI++++D +G + G GF+ +RK T AAQ A
Sbjct: 2 KQVSDGVAHIHASFNNTIVTITDRQGNALGWATAGGSGFRGSRKSTPFAAQVAAERCADA 61
Query: 81 ALEIGVSSVRINVRGLGPGRLKAL 104
E G+ ++ + V+G GPGR +
Sbjct: 62 VKEYGIKNLEVMVKGPGPGRESTI 85
>d2uubk1 c.55.4.1 (K:11-129) Ribosomal protein S11 {Thermus
thermophilus [TaxId: 274]}
Length = 119
Score = 66.8 bits (163), Expect = 3e-16
Identities = 32/84 (38%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 23 KNLP--IMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFKNARKGTNIAAQAAGITIGKK 80
+ + I + NNTI++++D G S G+ G+K +RKGT AAQ A + KK
Sbjct: 2 RQVASGRAYIHASYNNTIVTITDPDGNPITWSSGGVIGYKGSRKGTPYAAQLAALDAAKK 61
Query: 81 ALEIGVSSVRINVRGLGPGRLKAL 104
A+ G+ SV + VRG G GR +A+
Sbjct: 62 AMAYGMQSVDVIVRGTGAGREQAI 85
>d1ovya_ c.55.4.1 (A:) Ribosomal protein L18 (L18p) {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 97
Score = 32.5 bits (74), Expect = 0.003
Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
Query: 26 PIMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFKNARKGTNI-AAQAAGITIGKKALEI 84
P +++ + + + D ++ + ++ NI AA+ G + K+ALE
Sbjct: 6 PRLSVFRSNKHIYAQIIDDTKSATIVSASTLDKEFGLDSTNNIEAAKKVGELVAKRALEK 65
Query: 85 GVSSVRINVRGLGP-GRLKALEIGV 108
G+ V + G GR+KAL
Sbjct: 66 GIKQVVFDRGGYLYHGRVKALADAA 90
>d2j01s1 c.55.4.1 (S:23-108) Ribosomal protein L18 (L18p) {Thermus
thermophilus [TaxId: 274]}
Length = 86
Score = 27.4 bits (61), Expect = 0.22
Identities = 15/80 (18%), Positives = 33/80 (41%), Gaps = 3/80 (3%)
Query: 26 PIMNIRVTKNNTILSLSDAKGVVKLLRSCGMEGFKNARKGTNIAAQAAGITIGKKALEIG 85
+++ + + + D + V L+ + + + A+ G + +KAL +G
Sbjct: 2 LRLSVFRSLKHIYAQIIDDEKGVTLVSASSLA--LKLKGNKTEVARQVGRALAEKALALG 59
Query: 86 VSSVRINVRG-LGPGRLKAL 104
+ V + GR+KAL
Sbjct: 60 IKQVAFDRGPYKYHGRVKAL 79
>d1fepa_ f.4.3.3 (A:) Ferric enterobactin receptor FepA {Escherichia
coli [TaxId: 562]}
Length = 714
Score = 28.5 bits (61), Expect = 0.26
Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 6/73 (8%)
Query: 56 MEGFKNARKGTNIAAQAAGITIGKKALEIGVSSVR-INVRGLGPGRLKALEIGV-----S 109
+ AR + I G+ + + + R I++RG+GP L G +
Sbjct: 26 IRKNPVARDVSKIIRTMPGVNLTGNSTSGQRGNNRQIDIRGMGPENTLILIDGKPVSSRN 85
Query: 110 SVRINVRGLGPGR 122
SVR RG R
Sbjct: 86 SVRQGWRGERDTR 98
>d1ee6a_ b.80.1.1 (A:) Pectate lyase {Bacillus sp., strain ksmp15
[TaxId: 1409]}
Length = 197
Score = 27.5 bits (61), Expect = 0.36
Identities = 8/46 (17%), Positives = 13/46 (28%)
Query: 34 KNNTILSLSDAKGVVKLLRSCGMEGFKNARKGTNIAAQAAGITIGK 79
+ A + KL+R G +K N I +
Sbjct: 114 AGTINIRNFRADDIGKLVRQNGGTTYKVVMNVENCNISRVKDAILR 159
>d2gufa1 f.4.3.3 (A:4-594) Outer membrane cobalamin transporter BtuB
{Escherichia coli [TaxId: 562]}
Length = 591
Score = 27.9 bits (60), Expect = 0.38
Identities = 17/90 (18%), Positives = 35/90 (38%), Gaps = 6/90 (6%)
Query: 30 IRVTKNNTILSLSDAKGVVKLLRSCGMEGFKNARKGTNIAAQAAGITIGKKALEIGVSSV 89
+ VT N S ++ ++ + + ++ + G+ I + +SS+
Sbjct: 5 LVVTANRFEQPRSTVLAPTTVVTRQDIDRW-QSTSVNDVLRRLPGVDITQNGGSGQLSSI 63
Query: 90 RINVRGLGPGRLKALEIGVSSVRINVRGLG 119
I RG + L G VR+N+ G+
Sbjct: 64 FI--RGTNASHVLVLIDG---VRLNLAGVS 88
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes
[TaxId: 1639]}
Length = 227
Score = 26.9 bits (58), Expect = 0.56
Identities = 10/66 (15%), Positives = 20/66 (30%), Gaps = 11/66 (16%)
Query: 4 KDIFPDENTPDLIFDGLKFKNLPIMNIRVTKNNTILSLSDAKGVVKL-LRSCGMEGFKNA 62
IFPD N + + ++ +D G+ L G+ +
Sbjct: 10 NVIFPDPA----------LANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGV 59
Query: 63 RKGTNI 68
+ N+
Sbjct: 60 QYLNNL 65
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 199
Score = 26.9 bits (58), Expect = 0.61
Identities = 11/62 (17%), Positives = 19/62 (30%), Gaps = 14/62 (22%)
Query: 4 KDIFPDENTPDLIFDGLKFKNLPIMNIRVTKNNTILSLSDAKGVVKL-LRSCG---MEGF 59
IF D + + L N+ +S +D V L G ++G
Sbjct: 9 NQIFTDTALAEKMKTVLGKTNV----------TDTVSQTDLDQVTTLQADRLGIKSIDGV 58
Query: 60 KN 61
+
Sbjct: 59 EY 60
>d1kmoa_ f.4.3.3 (A:) Outer membrane transporter FecA {Escherichia
coli [TaxId: 562]}
Length = 661
Score = 26.5 bits (56), Expect = 0.97
Identities = 8/64 (12%), Positives = 21/64 (32%), Gaps = 1/64 (1%)
Query: 61 NARKGTNIAAQAAGITIGKKALEIGVS-SVRINVRGLGPGRLKALEIGVSSVRINVRGLG 119
A + + G++ + ++ +RGL P + + + + G
Sbjct: 36 GATTMREVLNRIPGVSAPENNGTGSHDLAMNFGIRGLNPRLASRSTVLMDGIPVPFAPYG 95
Query: 120 PGRL 123
+L
Sbjct: 96 QPQL 99
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes
[TaxId: 1639]}
Length = 384
Score = 26.1 bits (56), Expect = 1.4
Identities = 11/65 (16%), Positives = 19/65 (29%), Gaps = 14/65 (21%)
Query: 4 KDIFPDENTPDLIFDGLKFKNLPIMNIRVTKNNTILSLSDAKGVVKL-LRSCG---MEGF 59
IF D + + L N+ +S +D V L G ++G
Sbjct: 13 NQIFTDTALAEKMKTVLGKTNV----------TDTVSQTDLDQVTTLQADRLGIKSIDGV 62
Query: 60 KNARK 64
+
Sbjct: 63 EYLNN 67
>d1r4qa_ d.165.1.2 (A:) Shiga toxin, A-chain {Shigella dysenteriae,
toxin I [TaxId: 622]}
Length = 289
Score = 25.3 bits (55), Expect = 2.6
Identities = 7/42 (16%), Positives = 15/42 (35%)
Query: 35 NNTILSLSDAKGVVKLLRSCGMEGFKNARKGTNIAAQAAGIT 76
+ S++ G V L+ +C + AR ++
Sbjct: 223 RISFGSINAILGSVALILNCHHHASRVARMASDEFPSMCPAD 264
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 210
Score = 24.6 bits (52), Expect = 3.5
Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 11/62 (17%)
Query: 4 KDIFPDENTPDLIFDGLKFKNLPIMNIRVTKNN----TILSLSDAKGVVKLLRSCGMEGF 59
K IF D+ + I D LK K++ VT+N + ++ + G++
Sbjct: 15 KQIFSDDAFAETIKDNLKKKSV---TDAVTQNELNSIDQIIANN----SDIKSVQGIQYL 67
Query: 60 KN 61
N
Sbjct: 68 PN 69
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.140 0.391
Gapped
Lambda K H
0.267 0.0601 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 438,167
Number of extensions: 18214
Number of successful extensions: 52
Number of sequences better than 10.0: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 15
Length of query: 123
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 48
Effective length of database: 1,377,846
Effective search space: 66136608
Effective search space used: 66136608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.2 bits)