Query psy13612
Match_columns 294
No_of_seqs 144 out of 1449
Neff 6.4
Searched_HMMs 46136
Date Fri Aug 16 15:39:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13612.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13612hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1078 HD superfamily phospho 100.0 1E-74 2.2E-79 563.3 22.9 267 4-291 2-279 (421)
2 KOG2681|consensus 100.0 1E-70 2.2E-75 522.6 17.9 267 4-274 24-308 (498)
3 PRK01286 deoxyguanosinetriphos 99.9 1.9E-27 4.2E-32 225.6 13.4 221 18-267 29-281 (336)
4 TIGR01353 dGTP_triPase deoxygu 99.9 1.7E-24 3.8E-29 209.3 15.2 109 19-133 6-123 (381)
5 PRK05318 deoxyguanosinetriphos 99.9 5.5E-23 1.2E-27 201.6 14.0 113 18-133 25-142 (432)
6 PRK01096 deoxyguanosinetriphos 99.8 2.1E-21 4.6E-26 190.6 10.2 112 16-133 26-166 (440)
7 PRK04926 dgt deoxyguanosinetri 99.8 7.9E-20 1.7E-24 181.3 8.6 88 18-111 32-132 (503)
8 PRK03007 deoxyguanosinetriphos 99.8 5.8E-19 1.3E-23 172.7 8.3 101 17-133 36-143 (428)
9 COG0232 Dgt dGTP triphosphohyd 99.6 3.6E-15 7.8E-20 144.5 8.4 103 20-133 37-146 (412)
10 PF01966 HD: HD domain; Inter 99.2 6.4E-12 1.4E-16 99.6 2.0 111 54-187 1-121 (122)
11 cd00077 HDc Metal dependent ph 98.9 2.2E-09 4.8E-14 85.4 5.8 118 52-191 1-128 (145)
12 TIGR00488 putative HD superfam 98.6 8.2E-08 1.8E-12 82.2 6.0 115 52-190 7-138 (158)
13 PRK10119 putative hydrolase; P 98.5 2.8E-07 6E-12 84.0 8.1 114 50-198 23-147 (231)
14 smart00471 HDc Metal dependent 98.4 3.2E-07 6.9E-12 71.6 5.4 67 51-129 2-68 (124)
15 TIGR03401 cyanamide_fam HD dom 97.9 2.3E-05 4.9E-10 71.4 7.0 110 52-191 55-169 (228)
16 COG1418 Predicted HD superfami 97.9 7.5E-06 1.6E-10 74.2 3.6 62 52-133 35-96 (222)
17 TIGR00295 conserved hypothetic 97.9 3.1E-05 6.7E-10 66.9 6.4 59 53-128 13-71 (164)
18 TIGR03276 Phn-HD phosphonate d 97.7 3.1E-05 6.8E-10 68.0 3.2 68 47-131 19-86 (179)
19 PRK07152 nadD putative nicotin 97.5 0.00029 6.4E-09 67.6 8.4 63 35-107 176-240 (342)
20 PRK12703 tRNA 2'-O-methylase; 97.4 0.00035 7.6E-09 67.1 7.1 39 54-102 188-226 (339)
21 COG1713 Predicted HD superfami 97.3 0.00015 3.3E-09 63.9 3.1 38 53-100 17-54 (187)
22 TIGR03319 YmdA_YtgF conserved 97.1 0.0012 2.7E-08 66.8 7.7 153 52-241 328-484 (514)
23 PRK00106 hypothetical protein; 97.0 0.0015 3.2E-08 66.4 6.7 154 51-241 348-505 (535)
24 PF00233 PDEase_I: 3'5'-cyclic 96.9 0.002 4.4E-08 58.8 5.9 54 52-109 2-55 (237)
25 PRK12704 phosphodiesterase; Pr 96.7 0.0033 7.2E-08 63.8 6.8 88 52-174 334-421 (520)
26 TIGR00277 HDIG uncharacterized 96.6 0.0024 5.3E-08 46.8 3.6 39 53-101 4-42 (80)
27 PRK13480 3'-5' exoribonuclease 96.6 0.0046 9.9E-08 59.0 6.1 66 26-100 123-197 (314)
28 TIGR01596 cas3_HD CRISPR-assoc 96.4 0.0052 1.1E-07 52.4 4.9 70 56-132 3-80 (177)
29 PRK00227 glnD PII uridylyl-tra 96.4 0.0091 2E-07 62.6 7.5 87 22-133 334-435 (693)
30 PRK04374 PII uridylyl-transfer 96.3 0.012 2.6E-07 63.2 8.1 79 53-156 449-536 (869)
31 PRK03381 PII uridylyl-transfer 96.3 0.01 2.2E-07 63.1 7.3 87 22-133 374-475 (774)
32 PRK05092 PII uridylyl-transfer 96.2 0.015 3.3E-07 62.9 8.1 94 24-133 449-563 (931)
33 PRK01759 glnD PII uridylyl-tra 96.1 0.021 4.6E-07 61.3 8.7 110 22-156 390-523 (854)
34 PRK03059 PII uridylyl-transfer 96.1 0.018 3.9E-07 61.9 7.9 114 20-158 392-529 (856)
35 COG2206 c-di-GMP phosphodieste 96.1 0.0086 1.9E-07 57.6 5.0 54 51-115 147-200 (344)
36 TIGR03760 ICE_TraI_Pfluor inte 95.8 0.012 2.5E-07 53.4 4.5 53 46-101 53-120 (218)
37 PRK12705 hypothetical protein; 95.8 0.0088 1.9E-07 60.5 3.9 88 52-174 322-409 (508)
38 PRK00275 glnD PII uridylyl-tra 95.7 0.02 4.4E-07 61.7 6.6 112 20-156 412-547 (895)
39 TIGR01693 UTase_glnD [Protein- 95.6 0.026 5.6E-07 60.5 6.7 95 22-132 382-497 (850)
40 COG4341 Predicted HD phosphohy 95.5 0.0071 1.5E-07 52.3 1.7 40 47-101 24-63 (186)
41 PRK05007 PII uridylyl-transfer 95.3 0.033 7.2E-07 60.1 6.6 114 20-156 413-548 (884)
42 COG1896 Predicted hydrolases o 94.7 0.067 1.4E-06 47.6 5.7 64 29-99 10-74 (193)
43 PRK13298 tRNA CCA-pyrophosphor 94.7 0.081 1.8E-06 52.4 6.8 94 21-134 180-290 (417)
44 TIGR02692 tRNA_CCA_actino tRNA 94.7 0.055 1.2E-06 54.1 5.8 80 53-158 258-342 (466)
45 PRK10885 cca multifunctional t 94.6 0.046 1E-06 53.9 4.9 92 22-134 181-287 (409)
46 KOG3689|consensus 94.1 0.082 1.8E-06 55.3 5.7 54 50-109 429-484 (707)
47 PRK11031 guanosine pentaphosph 93.5 0.12 2.5E-06 52.3 5.4 47 52-101 321-367 (496)
48 PRK10854 exopolyphosphatase; P 93.4 0.12 2.7E-06 52.3 5.4 48 53-101 328-375 (513)
49 COG2844 GlnD UTP:GlnB (protein 93.2 0.16 3.5E-06 53.8 6.0 81 29-131 428-514 (867)
50 COG1480 Predicted membrane-ass 89.8 1 2.2E-05 47.0 7.3 90 51-155 488-580 (700)
51 COG3437 Response regulator con 89.5 0.45 9.7E-06 46.1 4.3 55 51-115 183-237 (360)
52 TIGR02621 cas3_GSU0051 CRISPR- 87.7 0.66 1.4E-05 49.8 4.5 54 49-112 671-724 (844)
53 PF08668 HDOD: HDOD domain; I 86.9 0.66 1.4E-05 40.2 3.4 47 54-109 95-141 (196)
54 PF13023 HD_3: HD domain; PDB: 81.8 2.6 5.7E-05 36.3 4.8 59 32-99 2-60 (165)
55 PRK03826 5'-nucleotidase; Prov 81.3 3.1 6.7E-05 37.1 5.2 63 30-99 8-70 (195)
56 PF07514 TraI_2: Putative heli 79.5 2.4 5.1E-05 40.8 4.1 45 54-100 67-118 (327)
57 COG3294 HD supefamily hydrolas 79.3 4.2 9.2E-05 37.3 5.4 94 21-132 27-130 (269)
58 COG3481 Predicted HD-superfami 75.7 3.3 7.2E-05 39.1 3.8 50 43-101 124-180 (287)
59 PF13286 HD_assoc: Phosphohydr 71.7 6.4 0.00014 30.0 4.0 33 236-268 11-43 (92)
60 COG1639 Predicted signal trans 67.1 11 0.00023 35.8 5.1 24 88-111 142-165 (289)
61 PF13328 HD_4: HD domain; PDB: 63.7 5.4 0.00012 33.5 2.3 32 52-98 18-49 (153)
62 KOG1573|consensus 63.5 6 0.00013 34.5 2.5 13 88-100 117-129 (204)
63 PF04263 TPK_catalytic: Thiami 62.6 9.4 0.0002 31.4 3.5 41 29-69 71-112 (123)
64 TIGR02562 cas3_yersinia CRISPR 61.5 6.8 0.00015 43.3 3.0 45 87-133 114-164 (1110)
65 COG2316 Predicted hydrolase (H 57.2 25 0.00054 31.0 5.2 34 56-99 50-83 (212)
66 COG0248 GppA Exopolyphosphatas 53.4 23 0.00049 36.1 5.0 44 56-101 329-372 (492)
67 PF12917 HD_2: HD containing h 53.2 30 0.00066 31.4 5.3 45 50-99 26-70 (215)
68 TIGR01378 thi_PPkinase thiamin 44.9 28 0.00061 30.9 3.8 36 34-69 79-114 (203)
69 TIGR02578 cas_TM1811_Csm1 CRIS 44.5 7.3 0.00016 40.9 -0.0 11 90-100 2-12 (648)
70 cd07995 TPK Thiamine pyrophosp 42.5 27 0.00059 30.9 3.4 40 30-69 78-118 (208)
71 PF05153 DUF706: Family of unk 39.4 31 0.00066 32.0 3.2 14 88-101 83-96 (253)
72 COG1353 Predicted CRISPR-assoc 32.5 25 0.00053 38.0 1.6 13 87-99 6-18 (799)
73 PF13875 DUF4202: Domain of un 27.6 3.9E+02 0.0085 23.7 8.0 96 63-174 31-132 (185)
74 TIGR00691 spoT_relA (p)ppGpp s 23.7 46 0.001 35.2 1.8 26 221-246 293-318 (683)
75 COG2254 Predicted HD superfami 23.7 56 0.0012 30.0 2.1 78 50-132 12-94 (230)
76 KOG3197|consensus 20.4 3.5E+02 0.0075 24.3 6.2 12 87-99 79-90 (210)
77 PF07268 EppA_BapA: Exported p 20.2 97 0.0021 26.1 2.6 30 148-188 86-115 (139)
No 1
>COG1078 HD superfamily phosphohydrolases [General function prediction only]
Probab=100.00 E-value=1e-74 Score=563.31 Aligned_cols=267 Identities=32% Similarity=0.508 Sum_probs=225.5
Q ss_pred CCceecCCCCcceecchhHHHHhcCHHHHHhhhhhccCceeeeccCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCCH
Q psy13612 4 NHKIFNDSVHGHMKFHPICVAIIDTPQFQRLRNIKQTSTTYLVYPGACHNRFEHSLGVSYLGGCMVDALVHNTPGLHITA 83 (294)
Q Consensus 4 ~~k~i~DpvhG~I~l~~~~~~IIdtp~FQRLr~I~QLg~~~~VyP~a~HtRfeHSLGV~hla~~~~~~l~~~~~~~~i~~ 83 (294)
.+|+|+|||||+|++++++.+|||||+|||||+|||||++++|||||+||||||||||||||+++++.|..+.. ..+++
T Consensus 2 ~~K~ikDpVHg~I~l~~~i~~LIdT~~FQRLRrIkQLG~a~lvyPgAnHTRFeHSLGV~~la~~~~~~l~~~~~-~~~~~ 80 (421)
T COG1078 2 MEKVIKDPVHGYIELDELILELIDTPEFQRLRRIKQLGLAYLVYPGANHTRFEHSLGVYHLARRLLEHLEKNSE-EEIDE 80 (421)
T ss_pred CceEeecCcCceEEcCHHHHHHhCCHHHHHHHHhhhccceeEecCCCcccccchhhHHHHHHHHHHHHHhhccc-cccch
Confidence 47999999999999999999999999999999999999999999999999999999999999999999987653 45666
Q ss_pred HHHHHHHHHHhhhhcCCCCCCchhhHhhhccCCCCccccccHHHHHHhhhcccch------hHHhhcCCCHHHHHHHHhC
Q psy13612 84 EEKLSVELAGLCHDLGHGPFSHTWEKFLRRFDSHWKHEQGSEEVLDYLIEDNKLG------PLFESYNLNLNLIKELIRG 157 (294)
Q Consensus 84 ~~~~~v~iAALLHDiGHgPFSH~~E~~l~~~~~~~~HE~~s~~i~~~li~~~~l~------~~l~~~~~~~~~I~~~I~g 157 (294)
.++..+++||||||||||||||+||.++.... ...||+.+.++ +.+++.. +++.++++++..|.+.+.|
T Consensus 81 ~~~~~~~~AALLHDIGHgPFSH~fE~~~~~~~-~~~He~~~~~i----i~~~~~e~~~~~~~i~~~~~~~~~~v~~~~~~ 155 (421)
T COG1078 81 EERLLVRLAALLHDIGHGPFSHTFEYVLDKNL-GFYHEDVTQRI----IKNGEIEINLVLNKILDKHGFDPADVIEILYG 155 (421)
T ss_pred HHHHHHHHHHHHHccCCCccccchHHHhcccc-cccHHHHHHHH----hcCCchhhhhHHhhhhhhcCcCHHHHHhhcCC
Confidence 77889999999999999999999999774332 23598876554 4444544 7788888887666666543
Q ss_pred CCCCCCCchhhHHHhhhcCCCCCCcccccccccccccccccc-CccHHHHhhhceeeecCCCCCceEEeccccHHHHHHH
Q psy13612 158 GGESLPADKRFLYQIIANKETDIDVDKWDYFLRDGHQLNLKI-TFDYRRLLSFCTVVKRPTDSGPTIAFRNKEASNIFDM 236 (294)
Q Consensus 158 ~~~~~~~~~~~l~~Ivs~~~~~lDaDrlDYl~RDs~~~G~~~-~~D~~rLi~~~~v~~~~~~g~~~l~~~~k~~~~ie~~ 236 (294)
.. ..++.+|+| ++|||||||||+||||+||+.+ .+|++||++.+++.+. .|++.+||+.++|+|
T Consensus 156 ~~------~~~~~~iis---s~lDaDRmDYL~RDsy~tGv~~g~iD~~Ril~~l~~~~~------~lv~~~kgi~aiE~~ 220 (421)
T COG1078 156 DS------NKVLVQIIS---SELDADRMDYLLRDSYYTGVSYGLIDLERILRVLRVVEG------RLVISEKGIEAIESF 220 (421)
T ss_pred cc------chhhhhhhc---CCcCcchHHHHHHhhhhhcCccCcccHHHHhhheEEeCC------EEEEecccHHHHHHH
Confidence 22 557889998 5999999999999999999985 8999999999998653 399999999999999
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHhHhhccCC---CCCc-ccchhHHHHHHhh
Q psy13612 237 FRVRADLHLRAYQHCATKNTELVRRPSIDEVNLCCRGS---VDGF-NRSTAFDYVWRQL 291 (294)
Q Consensus 237 ~~~R~~m~~~VY~H~~~r~~e~ml~~~l~~a~~~~~~~---~d~~-~~~~~~~~~~~~~ 291 (294)
+.+|++||.+||+||++++++.||.++|..|..+++.. ++.. ..+..+.-.|+.+
T Consensus 221 LisR~~MY~~VY~H~~~r~~~~mL~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 279 (421)
T COG1078 221 LISRYLMYQQVYFHPVSRIAEAMLRRALKRAIELYDLDFDAEEFRRLDDFELLALLRDL 279 (421)
T ss_pred HHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHhccccccccchhccChhHHHHHHHhc
Confidence 99999999999999999999999999999998887655 3222 3333335556554
No 2
>KOG2681|consensus
Probab=100.00 E-value=1e-70 Score=522.58 Aligned_cols=267 Identities=37% Similarity=0.618 Sum_probs=246.0
Q ss_pred CCceecCCCCcceecchhHHHHhcCHHHHHhhhhhccCceeeeccCCCCCchhhHHHHHHHHHHHHHHHHHcC-CCCCCC
Q psy13612 4 NHKIFNDSVHGHMKFHPICVAIIDTPQFQRLRNIKQTSTTYLVYPGACHNRFEHSLGVSYLGGCMVDALVHNT-PGLHIT 82 (294)
Q Consensus 4 ~~k~i~DpvhG~I~l~~~~~~IIdtp~FQRLr~I~QLg~~~~VyP~a~HtRfeHSLGV~hla~~~~~~l~~~~-~~~~i~ 82 (294)
.+|+|.|||||.|+++|.+.+|||||+|||||+++|||+.++|||||+||||+|||||+.||+..+++|+++| |+++|+
T Consensus 24 ~~~ii~d~vhg~i~l~pli~~lidt~~FqRLr~vkQlGl~~~vyp~A~HsRfeHsLG~~~lA~~~v~~L~~~q~~El~It 103 (498)
T KOG2681|consen 24 PSKIINDNVHGEIELPPLIIKLIDTPLFQRLRHVKQLGLRYLVYPGANHSRFEHSLGTYTLAGILVNALNKNQCPELCIT 103 (498)
T ss_pred HHHhhccccCceecCChHHHHHhccHHHHHHHHHHHhCceeeeccCCccchhhhhhhhHHHHHHHHHHHhhcCCCCCCCC
Confidence 5799999999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHhhhhcCCCCCCchhhH-hh--hccCCCCccccccHHHHHHhhhcccchhHHhhcC-CC---HHHHHHHH
Q psy13612 83 AEEKLSVELAGLCHDLGHGPFSHTWEK-FL--RRFDSHWKHEQGSEEVLDYLIEDNKLGPLFESYN-LN---LNLIKELI 155 (294)
Q Consensus 83 ~~~~~~v~iAALLHDiGHgPFSH~~E~-~l--~~~~~~~~HE~~s~~i~~~li~~~~l~~~l~~~~-~~---~~~I~~~I 155 (294)
+.+.+|+++||||||||||||||+||. |. ..++..|.||++|..|++.++++..+.++.+.++ ++ ++.|+++|
T Consensus 104 ~~d~~~vqvA~LLHDIGHGPfSHmFe~~f~~~v~s~~e~~HE~~si~~i~~i~~~~~i~~~~~~~~~~~~~~~~~vKdmI 183 (498)
T KOG2681|consen 104 EVDLQAVQVAALLHDIGHGPFSHLFEGEFTPMVRSGPEFYHEDMSIDMIKKISNEMQIKRIARCLLNIDHQDADAVKDMI 183 (498)
T ss_pred HHHHHHHHHHHHHhhcCCCchhhhhhheecccccCCcccchhhhHHHHHHHHhhhhhhhhHHHhhcCCCHHHHHHHHHHh
Confidence 999999999999999999999999999 65 3677899999999999999999888887776553 22 78899999
Q ss_pred hCCCCC--------CCCchhhHHHhhhcCCCCCCccccccccccccccccccCc--cHHHHhhhceeeecCCCCCceEEe
Q psy13612 156 RGGGES--------LPADKRFLYQIIANKETDIDVDKWDYFLRDGHQLNLKITF--DYRRLLSFCTVVKRPTDSGPTIAF 225 (294)
Q Consensus 156 ~g~~~~--------~~~~~~~l~~Ivs~~~~~lDaDrlDYl~RDs~~~G~~~~~--D~~rLi~~~~v~~~~~~g~~~l~~ 225 (294)
.|..+. ....++||++||+|..+|+|+||+|||.|||..+|+..+| |++|++..+||+.. ++ +|||
T Consensus 184 ~g~sE~~~~w~l~g~~~~ksflfdIVsN~rnGiDVDK~DYl~RD~~~~Gi~~~fs~~~~rl~~~~RV~~~--~n--~I~y 259 (498)
T KOG2681|consen 184 LGSSEDDHKWYLKGPDENKSFLFDIVSNDRNGLDVDKFDYLRRDSKALGIGNNFSQDFTRLFLGARVVID--DN--RICY 259 (498)
T ss_pred cCcccccccccccCCCCCceEEEEEecCCcccccchhHHHHHhhccccccccchHHHHHHHhhcceeecc--CC--EeEe
Confidence 998654 1235779999999999999999999999999999999888 99999999999764 44 4999
Q ss_pred ccccHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHhHhhccCC
Q psy13612 226 RNKEASNIFDMFRVRADLHLRAYQHCATKNTELVRRPSIDEVNLCCRGS 274 (294)
Q Consensus 226 ~~k~~~~ie~~~~~R~~m~~~VY~H~~~r~~e~ml~~~l~~a~~~~~~~ 274 (294)
+.|.+.++..+|.+|+.+|+.||+|+++.++|.|+.+||.+|+..+..+
T Consensus 260 r~k~~~~l~~lf~tR~~Lhr~vYqhp~~~~mdlmivDal~ra~~~l~it 308 (498)
T KOG2681|consen 260 RIKCYGSLYVLFHTRYLLHRKVYQHPQVGAMDLMIVDALTRALDHLEIT 308 (498)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHhhhhHHHhh
Confidence 9999999999999999999999999999999999999999998664444
No 3
>PRK01286 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=99.95 E-value=1.9e-27 Score=225.57 Aligned_cols=221 Identities=24% Similarity=0.333 Sum_probs=144.8
Q ss_pred cchhHHHHhcCHHHHHhhhhhccCceeeeccCCCC--CchhhHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHhh
Q psy13612 18 FHPICVAIIDTPQFQRLRNIKQTSTTYLVYPGACH--NRFEHSLGVSYLGGCMVDALVHNTPGLHITAEEKLSVELAGLC 95 (294)
Q Consensus 18 l~~~~~~IIdtp~FQRLr~I~QLg~~~~VyP~a~H--tRfeHSLGV~hla~~~~~~l~~~~~~~~i~~~~~~~v~iAALL 95 (294)
+.....+||+||.||||++++|+ +++|++.| |||+|||||+++|+.+++.|.. ++ .++++|||+
T Consensus 29 F~rD~drii~s~~frRL~~ktQv----~~~~~~dh~rtR~~Hsl~V~~iar~~~~~l~~-------~~---~l~~aaaL~ 94 (336)
T PRK01286 29 FQRDRDRIIHSKAFRRLKHKTQV----FINPEGDHYRTRLTHTLEVAQIARTIARALRL-------NE---DLTEAIALG 94 (336)
T ss_pred hhhhHHHHhCCHHHHhhhcccee----cccCCCcccccHHHHHHHHHHHHHHHHHHhCC-------CH---HHHHHHHHH
Confidence 45677899999999999999997 67899998 9999999999999999988642 22 368999999
Q ss_pred hhcCCCCCCchhhHhhhc---cCCCCccccccHHHHHHhhhcccchhHHhhcCCCHHHHHHHHhCCCCCC---CCchhhH
Q psy13612 96 HDLGHGPFSHTWEKFLRR---FDSHWKHEQGSEEVLDYLIEDNKLGPLFESYNLNLNLIKELIRGGGESL---PADKRFL 169 (294)
Q Consensus 96 HDiGHgPFSH~~E~~l~~---~~~~~~HE~~s~~i~~~li~~~~l~~~l~~~~~~~~~I~~~I~g~~~~~---~~~~~~l 169 (294)
|||||+||||++|.++.. ...+|+|+.+|.+++..+-... .-.+++.+....++.=+.... ....++-
T Consensus 95 HDiGh~PfgH~gE~~l~~~~~~~~~f~hn~~s~ri~~~l~~~~------~glnLT~~tL~gilKyp~~~~~~k~~~~tle 168 (336)
T PRK01286 95 HDLGHTPFGHAGEDALNELMKEYGGFEHNEQSLRVVDKLEKRY------DGLNLTWEVREGILKHSGPRNAPLGTAATLE 168 (336)
T ss_pred hcCCCCCCcchHHHHHHHhccccCCCcHHHHHHHHHHHHhhcC------CCccCCHHHHhhHHhCCccccccccCCCchH
Confidence 999999999999997632 1236999999999988764322 112233444444443222110 1123344
Q ss_pred HHhhhcCCCCCCcccccccccc---ccccccccCccH------------HHHhhhce--eeecCCC-------CCceEEe
Q psy13612 170 YQIIANKETDIDVDKWDYFLRD---GHQLNLKITFDY------------RRLLSFCT--VVKRPTD-------SGPTIAF 225 (294)
Q Consensus 170 ~~Ivs~~~~~lDaDrlDYl~RD---s~~~G~~~~~D~------------~rLi~~~~--v~~~~~~-------g~~~l~~ 225 (294)
.+|+.- ||.+=|...| +...|+-..-|+ .+++..+. +++...+ ....+.+
T Consensus 169 ~~ive~------ADdIaY~~~DiEDai~~gli~~~~~~~~~~~~~~~~~~~~I~~li~~~i~~~~~~~~~~~~~~~~i~~ 242 (336)
T PRK01286 169 GQIVRL------ADEIAYNNHDIDDGIRAGLITLEDLPEDVRRLLGETHRRRINTLVVDLIKNTQRNLAEGAAAPPLVSF 242 (336)
T ss_pred HHHHHH------HHHHHHHhhhHHHHHHcCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcccCcccccc
Confidence 566653 8889898887 466665431111 11111110 0110000 1112444
Q ss_pred ccccHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHh
Q psy13612 226 RNKEASNIFDMFRVRADLHLRAYQHCATKNTELVRRPSIDEV 267 (294)
Q Consensus 226 ~~k~~~~ie~~~~~R~~m~~~VY~H~~~r~~e~ml~~~l~~a 267 (294)
..+ ..+.+-..+..+|++||.|+.+...+....+++...
T Consensus 243 ~~~---~~~~~~~lk~~~~~~Iy~~~~v~~~e~~~~~iI~~L 281 (336)
T PRK01286 243 SEE---VAEAMKELRRFLFENVYRHPKVKREREKAKRIVQDL 281 (336)
T ss_pred CHH---HHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHH
Confidence 322 223344678899999999999998888777666653
No 4
>TIGR01353 dGTP_triPase deoxyguanosinetriphosphate triphosphohydrolase, putative. dGTP triphosphohydrolase (dgt) releases inorganic triphosphate, an unusual activity reaction product, from GTP. Its activity has been called limited to the Enterobacteriaceae, although homologous sequences are detected elsewhere. This finding casts doubt on whether the activity is shared in other species. In several of these other species, the homologous gene is found in an apparent operon with dnaG, the DNA primase gene. The enzyme from E. coli was shown to bind coopertatively to single stranded DNA. The biological role of dgt is unknown.
Probab=99.92 E-value=1.7e-24 Score=209.26 Aligned_cols=109 Identities=26% Similarity=0.335 Sum_probs=88.5
Q ss_pred chhHHHHhcCHHHHHhhhhhccCceeeeccCCC----CCchhhHHHHHHHHHHHHHHHHHcCCCCC-CCHHHHHHHHHHH
Q psy13612 19 HPICVAIIDTPQFQRLRNIKQTSTTYLVYPGAC----HNRFEHSLGVSYLGGCMVDALVHNTPGLH-ITAEEKLSVELAG 93 (294)
Q Consensus 19 ~~~~~~IIdtp~FQRLr~I~QLg~~~~VyP~a~----HtRfeHSLGV~hla~~~~~~l~~~~~~~~-i~~~~~~~v~iAA 93 (294)
.....+||+|+.||||++++| |||++. ||||+|||||+++|+.++..+....++.. ....+..++++||
T Consensus 6 erD~dRii~s~~frRL~~ktQ------v~~~~~~d~~~tRltHslev~~i~r~~~~~l~~~~~~~~~~~~~~~~l~~~a~ 79 (381)
T TIGR01353 6 ERDYDRIIHSSAFRRLQDKTQ------VFPLAENDFVRTRLTHSLEVAQVGRSIANLIGLRYDLELEELGPFERLAETAC 79 (381)
T ss_pred hhhHHHHhCCHHHhhhccCce------eCcCCCCCCCcCHhHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHH
Confidence 445679999999999999999 787774 99999999999999999998876433221 1223456899999
Q ss_pred hhhhcCCCCCCchhhHhhh----ccCCCCccccccHHHHHHhhh
Q psy13612 94 LCHDLGHGPFSHTWEKFLR----RFDSHWKHEQGSEEVLDYLIE 133 (294)
Q Consensus 94 LLHDiGHgPFSH~~E~~l~----~~~~~~~HE~~s~~i~~~li~ 133 (294)
|+|||||+||||++|.++. ..+.+++|+.+|.+|+..+-+
T Consensus 80 L~HDiGhpPfgH~gE~~l~~~~~~~g~~f~~n~q~~ri~~~Le~ 123 (381)
T TIGR01353 80 LAHDIGNPPFGHAGERALNDWMREYGPGFEGNAQTFRILTTLEK 123 (381)
T ss_pred HHhcCCCCCCcccHHHHHHHHHHhcCCCCChHHHHHHHHHHHhh
Confidence 9999999999999999772 222278999999999887654
No 5
>PRK05318 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=99.89 E-value=5.5e-23 Score=201.59 Aligned_cols=113 Identities=25% Similarity=0.317 Sum_probs=88.4
Q ss_pred cchhHHHHhcCHHHHHhhhhhc-cCceeeeccCCCCCchhhHHHHHHHHHHHHHHH-HHcCCCCCCCHHHHHHHHHHHhh
Q psy13612 18 FHPICVAIIDTPQFQRLRNIKQ-TSTTYLVYPGACHNRFEHSLGVSYLGGCMVDAL-VHNTPGLHITAEEKLSVELAGLC 95 (294)
Q Consensus 18 l~~~~~~IIdtp~FQRLr~I~Q-Lg~~~~VyP~a~HtRfeHSLGV~hla~~~~~~l-~~~~~~~~i~~~~~~~v~iAALL 95 (294)
+.....+||+|+.||||++++| +|.....|+ |||++|||||+++|+.+++.+ ....+++.....+..++++|||+
T Consensus 25 F~rD~dRii~s~~frRL~~ktQV~~~~~~d~~---~tRltHslev~~i~r~~~~~~~~~~~~~~~~~~~~~~l~~a~~L~ 101 (432)
T PRK05318 25 YQRDRARILHSAAFRRLQAKTQVLGVGENDFY---RTRLTHSLEVAQIGTGIVAQLKKEKQPELKPLLPSDSLIESLCLA 101 (432)
T ss_pred HHHHHHHHhCCHHHhhhcccceeCCCCCCCCC---cChhHHHHHHHHHHHHHHHHHhhccccccccccccHHHHHHHHHH
Confidence 4567789999999999999999 566555554 999999999999999999988 33333332211133468999999
Q ss_pred hhcCCCCCCchhhHhhhc---cCCCCccccccHHHHHHhhh
Q psy13612 96 HDLGHGPFSHTWEKFLRR---FDSHWKHEQGSEEVLDYLIE 133 (294)
Q Consensus 96 HDiGHgPFSH~~E~~l~~---~~~~~~HE~~s~~i~~~li~ 133 (294)
|||||+||||++|.+++. ...+++|..+|.+|+..|-.
T Consensus 102 HDiGhpPfgH~gE~~L~~~~~~~ggFEgNaQslRIlt~Le~ 142 (432)
T PRK05318 102 HDIGHPPFGHGGEVALNYMMRDHGGFEGNGQTFRILTKLEP 142 (432)
T ss_pred hcCCCCCCcccHHHHHHHHHHhcCCCchHHHHHHHHHHHhc
Confidence 999999999999997731 12268999999999887653
No 6
>PRK01096 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=99.85 E-value=2.1e-21 Score=190.64 Aligned_cols=112 Identities=31% Similarity=0.341 Sum_probs=86.8
Q ss_pred eecchhHHHHhcCHHHHHhhhhhccCceeeeccCCC----CCchhhHHHHHHHHHHHHHHHHHc-----CCCCCCCHHHH
Q psy13612 16 MKFHPICVAIIDTPQFQRLRNIKQTSTTYLVYPGAC----HNRFEHSLGVSYLGGCMVDALVHN-----TPGLHITAEEK 86 (294)
Q Consensus 16 I~l~~~~~~IIdtp~FQRLr~I~QLg~~~~VyP~a~----HtRfeHSLGV~hla~~~~~~l~~~-----~~~~~i~~~~~ 86 (294)
-.+.....+||+|++||||++++| |||.+. |||++|||||+++|+.+.+.+... .++..-.....
T Consensus 26 ~~F~rD~dRii~s~~frRL~~ktQ------Vfp~~~~d~~~tRltHsleV~~i~r~i~~~l~~~l~~~~~~~~~~~~~~~ 99 (440)
T PRK01096 26 SPFHKDYDRIIFSGSFRRLQRKTQ------VHPLAKNDHIHTRLTHSLEVSCVGRSLGMRVGETLKEEKLPDWISPADIG 99 (440)
T ss_pred CchhhhHHHHhCCHHHhhhccCce------eCcCCCCCCCcCHhHHHHHHHHHHHHHHHHHHHHHhhhccccccccchHH
Confidence 345677889999999999999999 788887 999999999999999998877532 11110011223
Q ss_pred HHHHHHHhhhhcCCCCCCchhhHhhh----ccC----------------CCCccccccHHHHHHhhh
Q psy13612 87 LSVELAGLCHDLGHGPFSHTWEKFLR----RFD----------------SHWKHEQGSEEVLDYLIE 133 (294)
Q Consensus 87 ~~v~iAALLHDiGHgPFSH~~E~~l~----~~~----------------~~~~HE~~s~~i~~~li~ 133 (294)
.++++|||+|||||+||||++|.++. ..+ .+++|...|.+++..+-.
T Consensus 100 ~lv~aa~L~HDiGhpPFgH~gE~~i~~~~~~~~~~~~~~~l~~~~~~d~~~FEGNaQslRilt~Le~ 166 (440)
T PRK01096 100 AIVQSACLAHDIGNPPFGHFGEDAIREWFQDAAGRGFLDDLSPQERADFLNFEGNAQGFRVLTKLEY 166 (440)
T ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHHHHHhcccchhhhccCHHHHHHhcCCcccccHHHHHHHHcc
Confidence 57899999999999999999999662 111 268899999998877643
No 7
>PRK04926 dgt deoxyguanosinetriphosphate triphosphohydrolase; Provisional
Probab=99.80 E-value=7.9e-20 Score=181.31 Aligned_cols=88 Identities=30% Similarity=0.463 Sum_probs=70.9
Q ss_pred cchhHHHHhcCHHHHHhhhhhccCceeeecc----CCCCCchhhHHHHHHHHHHHHHHHHHcC-----C-CCCCC---HH
Q psy13612 18 FHPICVAIIDTPQFQRLRNIKQTSTTYLVYP----GACHNRFEHSLGVSYLGGCMVDALVHNT-----P-GLHIT---AE 84 (294)
Q Consensus 18 l~~~~~~IIdtp~FQRLr~I~QLg~~~~VyP----~a~HtRfeHSLGV~hla~~~~~~l~~~~-----~-~~~i~---~~ 84 (294)
+.....+||+|+.||||++++| ||| ++.|||++|||||+++++.++..+.+.. + ..+++ ..
T Consensus 32 ferD~dRIi~S~afrRLq~KtQ------Vfpl~~nd~~rtRltHSleV~~i~r~i~~~i~~~l~~~~~~~~~~~~~~~~~ 105 (503)
T PRK04926 32 FESDRGRIINSAAIRRLQQKTQ------VFPLERNAAVRSRLTHSLEVQQVGRYIAKEILSRLKEQKLLEAYGLDELTGP 105 (503)
T ss_pred HhhhhhHHhCCHHHhhhccCce------eCcCCCCCCeeCHhHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccc
Confidence 3456779999999999999999 899 8899999999999999998887764321 1 11222 11
Q ss_pred HHHHHHHHHhhhhcCCCCCCchhhHhh
Q psy13612 85 EKLSVELAGLCHDLGHGPFSHTWEKFL 111 (294)
Q Consensus 85 ~~~~v~iAALLHDiGHgPFSH~~E~~l 111 (294)
...++++|||+|||||+||||.+|.++
T Consensus 106 ~~~lveaa~L~HDiGhpPFGH~GE~ai 132 (503)
T PRK04926 106 FESIVEMACLMHDIGNPPFGHFGEAAI 132 (503)
T ss_pred hHHHHHHHHHHhcCCCCCCcccHHHHH
Confidence 234789999999999999999999966
No 8
>PRK03007 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=99.77 E-value=5.8e-19 Score=172.66 Aligned_cols=101 Identities=27% Similarity=0.379 Sum_probs=83.6
Q ss_pred ecchhHHHHhcCHHHHHhhhhhccCceeeeccCCC----CCchhhHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Q psy13612 17 KFHPICVAIIDTPQFQRLRNIKQTSTTYLVYPGAC----HNRFEHSLGVSYLGGCMVDALVHNTPGLHITAEEKLSVELA 92 (294)
Q Consensus 17 ~l~~~~~~IIdtp~FQRLr~I~QLg~~~~VyP~a~----HtRfeHSLGV~hla~~~~~~l~~~~~~~~i~~~~~~~v~iA 92 (294)
++.....+||.|+.|+||++..| |||... |||++|||||+++|+.+++.+..+ ..++.+|
T Consensus 36 ~FqRDrdRIi~S~afRRL~~KtQ------Vf~~~~~Df~~tRltHslev~~~~r~~~~~~~~~----------~~~~~~~ 99 (428)
T PRK03007 36 DFARDRARVLHSAALRRLADKTQ------VVGPREGDTPRTRLTHSLEVAQIGRGIAAGLGCD----------PDLVDLA 99 (428)
T ss_pred chhhhHHHHhCCHHHHhhhccce------eccCCCCCccccHHHHHHHHHHHHHHHHHHhCCC----------HHHHHHH
Confidence 35567889999999999999999 666554 899999999999999999876421 2468999
Q ss_pred HhhhhcCCCCCCchhhHhhhc---cCCCCccccccHHHHHHhhh
Q psy13612 93 GLCHDLGHGPFSHTWEKFLRR---FDSHWKHEQGSEEVLDYLIE 133 (294)
Q Consensus 93 ALLHDiGHgPFSH~~E~~l~~---~~~~~~HE~~s~~i~~~li~ 133 (294)
||+|||||+||||.+|.++.. ...+++|..+|.+|+..+-.
T Consensus 100 ~l~hd~GhpPfgH~gE~~l~~~~~~~ggFEGNAQslRIlt~LE~ 143 (428)
T PRK03007 100 GLAHDIGHPPYGHNGERALDEVAADCGGFEGNAQTLRILTRLEP 143 (428)
T ss_pred HHHhcCCCCCCcccHHHHHHHHHHhCCCCchHHHHHHHHHHhcc
Confidence 999999999999999997721 22368999999999877653
No 9
>COG0232 Dgt dGTP triphosphohydrolase [Nucleotide transport and metabolism]
Probab=99.58 E-value=3.6e-15 Score=144.47 Aligned_cols=103 Identities=31% Similarity=0.400 Sum_probs=83.4
Q ss_pred hhHHHHhcCHHHHHhhhhhccCceeeeccCCC----CCchhhHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHhh
Q psy13612 20 PICVAIIDTPQFQRLRNIKQTSTTYLVYPGAC----HNRFEHSLGVSYLGGCMVDALVHNTPGLHITAEEKLSVELAGLC 95 (294)
Q Consensus 20 ~~~~~IIdtp~FQRLr~I~QLg~~~~VyP~a~----HtRfeHSLGV~hla~~~~~~l~~~~~~~~i~~~~~~~v~iAALL 95 (294)
....+||+|..|.||+...| |||... .||.+|||-|+.+|+-++..|..++- .... .+++.|||+
T Consensus 37 rDr~RIihSaAfRRLq~KTQ------Vf~~~~~D~~RTRLTHSLEVAQIgRsia~~l~~~~~---~~~~--dL~E~a~La 105 (412)
T COG0232 37 RDRDRIIHSAAFRRLQDKTQ------VFPLHEGDFYRTRLTHSLEVAQIGRSIARELGLDLD---LPFE--DLVETACLA 105 (412)
T ss_pred ccchhhhhhHHHHhhcccce------ecccccCCcccccchhhHHHHHHHHHHHHHhccccC---CChH--HHHHHHHHH
Confidence 45669999999999999999 787653 69999999999999999998876511 1112 268999999
Q ss_pred hhcCCCCCCchhhHhhh---ccCCCCccccccHHHHHHhhh
Q psy13612 96 HDLGHGPFSHTWEKFLR---RFDSHWKHEQGSEEVLDYLIE 133 (294)
Q Consensus 96 HDiGHgPFSH~~E~~l~---~~~~~~~HE~~s~~i~~~li~ 133 (294)
|||||+||+|..|..++ .+..+++|-.++-+|+..|..
T Consensus 106 HDiGhPPFGH~GE~ALn~~m~~~gGFEGNAQ~fRIlT~LE~ 146 (412)
T COG0232 106 HDIGHPPFGHAGEDALNEVMREYGGFEGNAQTFRILTKLEK 146 (412)
T ss_pred hcCCCCCCCccHHHHHHHHHHHcCCCcccchhhHHHHHhhh
Confidence 99999999999999772 223368999999998876543
No 10
>PF01966 HD: HD domain; InterPro: IPR006674 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity []. These enzymes appear to be involved in the nucleic acid metabolism, signal transduction and possibly other functions in bacteria, archaea and eukaryotes. The fact that all the highly conserved residues in the HD superfamily are histidines or aspartates suggests that coordination of divalent cations is essential for the activity of these proteins [].; GO: 0008081 phosphoric diester hydrolase activity, 0046872 metal ion binding; PDB: 2CQZ_A 2Q14_C 3CCG_A 2PAU_A 2PAQ_B 2PAR_B 3BG2_A 3NQW_A 2QGS_B 2DQB_D ....
Probab=99.19 E-value=6.4e-12 Score=99.64 Aligned_cols=111 Identities=27% Similarity=0.351 Sum_probs=73.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHhhhhcCCCCCCchhhHhhhccCCCCccccccHHHHHHhhh
Q psy13612 54 RFEHSLGVSYLGGCMVDALVHNTPGLHITAEEKLSVELAGLCHDLGHGPFSHTWEKFLRRFDSHWKHEQGSEEVLDYLIE 133 (294)
Q Consensus 54 RfeHSLGV~hla~~~~~~l~~~~~~~~i~~~~~~~v~iAALLHDiGHgPFSH~~E~~l~~~~~~~~HE~~s~~i~~~li~ 133 (294)
||+||++|+.+|..+++.+.. +.+..++.+||||||||+.+.++.++......+....|+..|..++.....
T Consensus 1 ~~~Hs~~V~~~a~~l~~~~~~--------~~~~~~l~~aaLlHDiGk~~~~~~~~~~~~~~~~~~~H~~~g~~~~~~~~~ 72 (122)
T PF01966_consen 1 RFEHSLRVAELAERLADRLGL--------EEDRELLRIAALLHDIGKIPTPDFIEKKPEERGKFYRHEEIGAEILKEFLK 72 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHTH--------HHHHHHHHHHHHHTTTTHHSTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHcCC--------chhHHHHHHHHHHHhcCCCCCchHHHHhHhhhchhhhhHHHHHHHHHHhhh
Confidence 799999999999999987642 567789999999999999999987775321111124688888887765443
Q ss_pred cccchhHHhhcCCCHHHHHHHHhCCCCCCC----------CchhhHHHhhhcCCCCCCcccccc
Q psy13612 134 DNKLGPLFESYNLNLNLIKELIRGGGESLP----------ADKRFLYQIIANKETDIDVDKWDY 187 (294)
Q Consensus 134 ~~~l~~~l~~~~~~~~~I~~~I~g~~~~~~----------~~~~~l~~Ivs~~~~~lDaDrlDY 187 (294)
.. +.+.+.|+.+|........ .+..-+..||. +||++|.
T Consensus 73 ~~---------~~~~~~i~~~i~~H~~~~~~~~~~~~~~~~~~~~~~~iv~------~aD~l~a 121 (122)
T PF01966_consen 73 EL---------GLPIEIIANAIRYHHGPWNGEGKPKEEDYEPISLEARIVK------LADRLDA 121 (122)
T ss_dssp HH---------CHCHHHHHHHHHHTTTHHTSHHCHHCHSCSTSSHHHHHHH------HHHHHHH
T ss_pred hc---------chHHHHHHHHHHHhcccccccccccccCCCCCCHHHHHHH------HHHHHhC
Confidence 22 2224556666654332111 12334556666 5777764
No 11
>cd00077 HDc Metal dependent phosphohydrolases with conserved 'HD' motif
Probab=98.91 E-value=2.2e-09 Score=85.45 Aligned_cols=118 Identities=26% Similarity=0.296 Sum_probs=73.4
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHhhhhcCCCCCCchhhHhhhccCCCCccccccHHHHHHh
Q psy13612 52 HNRFEHSLGVSYLGGCMVDALVHNTPGLHITAEEKLSVELAGLCHDLGHGPFSHTWEKFLRRFDSHWKHEQGSEEVLDYL 131 (294)
Q Consensus 52 HtRfeHSLGV~hla~~~~~~l~~~~~~~~i~~~~~~~v~iAALLHDiGHgPFSH~~E~~l~~~~~~~~HE~~s~~i~~~l 131 (294)
.++++||+.|+.++..+.+.+.. ++.+...+.+||||||+|+.++.|.+.. ......+.|+..+..+++.+
T Consensus 1 ~~~~~Hs~~v~~~~~~~~~~~~~-------~~~~~~~l~~aaLlHDig~~~~~~~~~~--~~~~~~~~h~~~g~~~~~~~ 71 (145)
T cd00077 1 EHRFEHSLRVAQLARRLAEELGL-------SEEDIELLRLAALLHDIGKPGTPDAITE--EESELEKDHAIVGAEILREL 71 (145)
T ss_pred CchHHHHHHHHHHHHHHHHHhCc-------CHHHHHHHHHHHHHHhcCCccCccccCH--HHHHHHHhhHHHHHHHHHHh
Confidence 36899999999999999876431 3456678999999999999999987611 11111356888888877653
Q ss_pred hhcccchhHHhhcCCCHHHHHHHHhCCC---CCCC-------CchhhHHHhhhcCCCCCCcccccccccc
Q psy13612 132 IEDNKLGPLFESYNLNLNLIKELIRGGG---ESLP-------ADKRFLYQIIANKETDIDVDKWDYFLRD 191 (294)
Q Consensus 132 i~~~~l~~~l~~~~~~~~~I~~~I~g~~---~~~~-------~~~~~l~~Ivs~~~~~lDaDrlDYl~RD 191 (294)
. ..+..++..+.+...+.-.. .... .+...+..++. .||++|+..|+
T Consensus 72 ~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~------~AD~~~~~~~~ 128 (145)
T cd00077 72 L-------LEEVIKLIDELILAVDASHHERLDGLGYPDGLKGEEITLEARIVK------LADRLDALRRD 128 (145)
T ss_pred h-------hcccccccHHHHHHHHHHcccCCCCCCCCCCCCcccCCHHHHHHH------HHHHHHHHhcC
Confidence 1 11122222233333331111 1000 11235666776 69999999998
No 12
>TIGR00488 putative HD superfamily hydrolase of NAD metabolism. The function of this protein family is unknown. Members of this family of uncharacterized proteins from the Mycoplasmas are longer at the amino end, fused to a region of nicotinamide nucleotide adenylyltransferase, an NAD salvage biosynthesis enzyme. Members are putative metal-dependent phosphohydrolases for NAD metabolism.
Probab=98.59 E-value=8.2e-08 Score=82.18 Aligned_cols=115 Identities=19% Similarity=0.282 Sum_probs=64.4
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHhhhhcCCC-CCCchhhHhhhccC---------CCCccc
Q psy13612 52 HNRFEHSLGVSYLGGCMVDALVHNTPGLHITAEEKLSVELAGLCHDLGHG-PFSHTWEKFLRRFD---------SHWKHE 121 (294)
Q Consensus 52 HtRfeHSLGV~hla~~~~~~l~~~~~~~~i~~~~~~~v~iAALLHDiGHg-PFSH~~E~~l~~~~---------~~~~HE 121 (294)
-.||+||++|+.+|+.+++.+. .+. ....+||||||||.. |.....+ .....+ .+..|.
T Consensus 7 ~~r~~Hsl~Va~~a~~lA~~~~-------~d~---e~a~~AGLLHDIGk~~~~~~~~~-~~~~~~~~~~~~~~~~~~~H~ 75 (158)
T TIGR00488 7 EHRYQHCLGVGQTAKQLAEANK-------LDS---KKAEIAGAYHDLAKFLPKEQLKQ-IAKREKMPAHLLYPSPKLLHA 75 (158)
T ss_pred hHHHHHHHHHHHHHHHHHHHhC-------cCH---HHHHHHHHHHHHhccCCHHHHHH-HHHHcCCCchhhcccccccHH
Confidence 4799999999999999997642 122 247899999999983 3222221 111111 123476
Q ss_pred cccHHHHHHhhhcccchhHHhhc-CCCHHHHHHHHhCCCCCCCC-c----hhhHHHhhhcCC-CCCCccccccccc
Q psy13612 122 QGSEEVLDYLIEDNKLGPLFESY-NLNLNLIKELIRGGGESLPA-D----KRFLYQIIANKE-TDIDVDKWDYFLR 190 (294)
Q Consensus 122 ~~s~~i~~~li~~~~l~~~l~~~-~~~~~~I~~~I~g~~~~~~~-~----~~~l~~Ivs~~~-~~lDaDrlDYl~R 190 (294)
..+..+++ ++ +++++.|.+.|.....+... . --++.+.+++.. ++.++|+++++.-
T Consensus 76 ~vGa~ll~-------------~w~~~~~~~i~~aI~~H~~~~~~~~~l~~iV~lAD~i~~~~~~~~~~~~~~~~~~ 138 (158)
T TIGR00488 76 YVGAYILK-------------REFGVQDEDILDAIRNHTSGPPGMSLLDMIIYVADKLEPNRGAGIEIDELRKLAK 138 (158)
T ss_pred HHHHHHHH-------------HHhCCCcHHHHHHHHHhCCCCCCCCHHHHHHHhHHHHhhcccccccHHHHHHHHH
Confidence 66665543 33 35444555656432221111 1 113444555544 4677777777743
No 13
>PRK10119 putative hydrolase; Provisional
Probab=98.53 E-value=2.8e-07 Score=84.02 Aligned_cols=114 Identities=16% Similarity=0.061 Sum_probs=73.8
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHhhhhcCCCCCCchhhHhhhccCCCCccccccHHHHH
Q psy13612 50 ACHNRFEHSLGVSYLGGCMVDALVHNTPGLHITAEEKLSVELAGLCHDLGHGPFSHTWEKFLRRFDSHWKHEQGSEEVLD 129 (294)
Q Consensus 50 a~HtRfeHSLGV~hla~~~~~~l~~~~~~~~i~~~~~~~v~iAALLHDiGHgPFSH~~E~~l~~~~~~~~HE~~s~~i~~ 129 (294)
..|. |.|..-|..+|.++++.- ..|..+|.+||||||||..|-.|- ..-.|...+.+.+.
T Consensus 23 ~~HD-~~Hi~RV~~lA~~Ia~~e----------~~D~~vv~lAAlLHDv~d~~k~~~---------~~~~~~~~~a~~a~ 82 (231)
T PRK10119 23 AAHD-ICHFRRVWATAQKLAADD----------DVDMLVVLTACYFHDIVSLAKNHP---------QRHRSSILAAEETR 82 (231)
T ss_pred CccC-hHHHHHHHHHHHHHHHhc----------CCCHHHHHHHHHHhhcchhhhcCc---------cccchhhHHHHHHH
Confidence 4688 999999999999997531 125567899999999996442110 01123344444444
Q ss_pred HhhhcccchhHHhh--cCCC---HHHHHHHHhCCCCCC-CCchhhHHHhhhcCCCCCCccccccc-----cccccccccc
Q psy13612 130 YLIEDNKLGPLFES--YNLN---LNLIKELIRGGGESL-PADKRFLYQIIANKETDIDVDKWDYF-----LRDGHQLNLK 198 (294)
Q Consensus 130 ~li~~~~l~~~l~~--~~~~---~~~I~~~I~g~~~~~-~~~~~~l~~Ivs~~~~~lDaDrlDYl-----~RDs~~~G~~ 198 (294)
. .|.+ .|++ ++.|+.+|...+... ..+.+...+||+ ||||||-| .|=-.+.|..
T Consensus 83 ~---------~L~~~~~g~~~~~i~~V~~iI~~~sfs~~~~p~tlE~kIVQ------DADRLDAiGAIGIaR~f~~gG~~ 147 (231)
T PRK10119 83 R---------ILREDFPDFPAEKIEAVCHAIEAHSFSAQIAPLTLEAKIVQ------DADRLEALGAIGLARVFAVSGAL 147 (231)
T ss_pred H---------HHHHcccCcCHHHHHHHHHHHHHcCCCCCCCCCCHHHhhhh------hHHHHHhcchHHHHHHHHHHHHh
Confidence 3 4455 4666 566777887665432 234567789998 99999985 5655555544
No 14
>smart00471 HDc Metal dependent phosphohydrolases with conserved 'HD' motif. Includes eukaryotic cyclic nucleotide phosphodiesterases (PDEc). This profile/HMM does not detect HD homologues in bacterial glycine aminoacyl-tRNA synthetases (beta subunit).
Probab=98.44 E-value=3.2e-07 Score=71.60 Aligned_cols=67 Identities=25% Similarity=0.207 Sum_probs=48.7
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHhhhhcCCCCCCchhhHhhhccCCCCccccccHHHHH
Q psy13612 51 CHNRFEHSLGVSYLGGCMVDALVHNTPGLHITAEEKLSVELAGLCHDLGHGPFSHTWEKFLRRFDSHWKHEQGSEEVLD 129 (294)
Q Consensus 51 ~HtRfeHSLGV~hla~~~~~~l~~~~~~~~i~~~~~~~v~iAALLHDiGHgPFSH~~E~~l~~~~~~~~HE~~s~~i~~ 129 (294)
.+++++||+.|+.++..+.+.+.. .+...+.+||||||+|+.+.++....... ....|+..+..+++
T Consensus 2 ~~~~~~H~~~v~~~~~~l~~~~~~---------~~~~~~~~a~LlHDig~~~~~~~~~~~~~---~~~~h~~~~~~~~~ 68 (124)
T smart00471 2 DYHVFEHSLRVAQLAAALAEELGL---------LDIELLLLAALLHDIGKPGTPDSFLVKTS---VLEDHHFIGAEILL 68 (124)
T ss_pred CchHHHHHHHHHHHHHHHHHHcCh---------HHHHHHHHHHHHHcccCccCCHHHhcCcc---HHHHhHHHHHHHHH
Confidence 467899999999999999876421 24457899999999999998876643110 12457777766554
No 15
>TIGR03401 cyanamide_fam HD domain protein, cyanamide hydratase family. Members of this protein family are known, so far, in the Ascomycota, a branch of the Fungi, and contain an HD domain (pfam01966), found typically in various metal-dependent phosphohydrolases. The only characterized member of this family, from the soil fungus Myrothecium verrucaria, is cyanamide hydratase (EC 4.2.1.69), a zinc-containing homohexamer that adds water to the fertilizer cyanamide (NCNH2), a nitrile compound, to produce urea (NH2-CO-NH2). Homologs are likely to be nitrile hydratases.
Probab=97.94 E-value=2.3e-05 Score=71.44 Aligned_cols=110 Identities=17% Similarity=0.170 Sum_probs=69.6
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHhhhhcCCCCCCchhhHhhhccCCCCccccccHHHHHHh
Q psy13612 52 HNRFEHSLGVSYLGGCMVDALVHNTPGLHITAEEKLSVELAGLCHDLGHGPFSHTWEKFLRRFDSHWKHEQGSEEVLDYL 131 (294)
Q Consensus 52 HtRfeHSLGV~hla~~~~~~l~~~~~~~~i~~~~~~~v~iAALLHDiGHgPFSH~~E~~l~~~~~~~~HE~~s~~i~~~l 131 (294)
|. |.||+.|+.+|..+.+. ..|+.+. |.+.+.+||||||||=.+ .+. ......+|..+...++.
T Consensus 55 ~~-~~Hs~RV~~~a~~ia~~---e~~~~~~---D~evl~lAALLHDIG~~~------~~~--~~~~~~fe~~ga~~A~~- 118 (228)
T TIGR03401 55 ET-YNHSLRVYYYGLAIARD---QFPEWDL---SDETWFLTCLLHDIGTTD------ENM--TATKMSFEFYGGILALD- 118 (228)
T ss_pred hh-hHHHHHHHHHHHHHHHH---hccccCC---CHHHHHHHHHHHhhcccc------ccC--CcccCCHHHHHHHHHHH-
Confidence 55 99999999999888753 1222233 345689999999999542 121 11234567777666655
Q ss_pred hhcccchhHHhhc-CCC---HHHHHHHHhCCCCC-CCCchhhHHHhhhcCCCCCCcccccccccc
Q psy13612 132 IEDNKLGPLFESY-NLN---LNLIKELIRGGGES-LPADKRFLYQIIANKETDIDVDKWDYFLRD 191 (294)
Q Consensus 132 i~~~~l~~~l~~~-~~~---~~~I~~~I~g~~~~-~~~~~~~l~~Ivs~~~~~lDaDrlDYl~RD 191 (294)
.|.+. |++ ++.|++.|...... .....+.+.+||+ |+|++|-+..+
T Consensus 119 --------~L~~~~G~~~~~~~~V~~aI~~H~~~~~~~~~~~e~~lvq------~Ad~lDa~Ga~ 169 (228)
T TIGR03401 119 --------VLKEQTGANQDQAEAVAEAIIRHQDLGVDGTITTLGQLLQ------LATIFDNVGAN 169 (228)
T ss_pred --------HHHHCCCCCHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHH------HHHHHhHccCC
Confidence 34445 665 56677777644322 1123355788998 79999887544
No 16
>COG1418 Predicted HD superfamily hydrolase [General function prediction only]
Probab=97.92 E-value=7.5e-06 Score=74.24 Aligned_cols=62 Identities=24% Similarity=0.267 Sum_probs=44.9
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHhhhhcCCCCCCchhhHhhhccCCCCccccccHHHHHHh
Q psy13612 52 HNRFEHSLGVSYLGGCMVDALVHNTPGLHITAEEKLSVELAGLCHDLGHGPFSHTWEKFLRRFDSHWKHEQGSEEVLDYL 131 (294)
Q Consensus 52 HtRfeHSLGV~hla~~~~~~l~~~~~~~~i~~~~~~~v~iAALLHDiGHgPFSH~~E~~l~~~~~~~~HE~~s~~i~~~l 131 (294)
=++++||+-|+.||..+.... +. |..+++.||||||||.+-. ..+.++ |...+.++++.+
T Consensus 35 ~~~l~H~~~Va~lA~~Ia~~~-------g~---D~~l~~~aaLLHDIg~~~~---------~~~~~~-h~~~gae~a~~~ 94 (222)
T COG1418 35 QHVLEHSLRVAYLAYRIAEEE-------GV---DPDLALRAALLHDIGKAID---------HEPGGS-HAEIGAEIARKF 94 (222)
T ss_pred chHHHHHHHHHHHHHHHHHHc-------CC---CHHHHHHHHHHHhhccccc---------cCCccc-hHHHHHHHHHHH
Confidence 356999999999999999762 12 4567999999999998631 111123 888888877665
Q ss_pred hh
Q psy13612 132 IE 133 (294)
Q Consensus 132 i~ 133 (294)
..
T Consensus 95 ~~ 96 (222)
T COG1418 95 LE 96 (222)
T ss_pred cc
Confidence 43
No 17
>TIGR00295 conserved hypothetical protein TIGR00295. This set of orthologs is narrowly defined, comprising proteins found in three Archaea but not in Pyrococcus horikoshii. The closest homologs are other archaeal proteins that appear to be represent distinct orthologous clusters.
Probab=97.87 E-value=3.1e-05 Score=66.92 Aligned_cols=59 Identities=19% Similarity=0.213 Sum_probs=41.1
Q ss_pred CchhhHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHhhhhcCCCCCCchhhHhhhccCCCCccccccHHHH
Q psy13612 53 NRFEHSLGVSYLGGCMVDALVHNTPGLHITAEEKLSVELAGLCHDLGHGPFSHTWEKFLRRFDSHWKHEQGSEEVL 128 (294)
Q Consensus 53 tRfeHSLGV~hla~~~~~~l~~~~~~~~i~~~~~~~v~iAALLHDiGHgPFSH~~E~~l~~~~~~~~HE~~s~~i~ 128 (294)
+.++||+.|+.+|..+++.+..+. .. .|...+.+||||||||-... + ++.|...+..++
T Consensus 13 ~~~~Hs~~Va~~A~~ia~~~~~~~--~~---~d~~~l~~aaLLHDIGK~~~----------~--~~~H~~~G~~iL 71 (164)
T TIGR00295 13 SVRRHCLAVARVAMELAENIRKKG--HE---VDMDLVLKGALLHDIGRART----------H--GFEHFVKGAEIL 71 (164)
T ss_pred cHHHHHHHHHHHHHHHHHHhcccc--cc---CCHHHHHHHHHHhcCCcccC----------C--CCCHHHHHHHHH
Confidence 359999999999999998764221 11 24456899999999997531 1 246777766543
No 18
>TIGR03276 Phn-HD phosphonate degradation operons associated HDIG domain protein. This small clade of proteins are found adjacent to other genes implicated in the catabolism of phosphonates. They are members of the TIGR00277 domain family and contain a series of five invariant histidines (the domain in general has only four).
Probab=97.67 E-value=3.1e-05 Score=67.96 Aligned_cols=68 Identities=22% Similarity=0.236 Sum_probs=45.0
Q ss_pred ccCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHhhhhcCCCCCCchhhHhhhccCCCCccccccHH
Q psy13612 47 YPGACHNRFEHSLGVSYLGGCMVDALVHNTPGLHITAEEKLSVELAGLCHDLGHGPFSHTWEKFLRRFDSHWKHEQGSEE 126 (294)
Q Consensus 47 yP~a~HtRfeHSLGV~hla~~~~~~l~~~~~~~~i~~~~~~~v~iAALLHDiGHgPFSH~~E~~l~~~~~~~~HE~~s~~ 126 (294)
|-|=.-|+.+|+|.|+.+|.+-- -++ -+.+|||||||||.+-.+ .|.. ...+..++|+..+..
T Consensus 19 y~Ge~Vs~leH~LQ~A~lA~~~G-----------ad~----elvvAALLHDIGhll~~~-~~~~-~~~g~~~~He~iga~ 81 (179)
T TIGR03276 19 YGGEAVSQLEHALQCAQLAEAAG-----------ADD----ELIVAAFLHDIGHLLADE-GATP-MGRGGDDHHEELAAD 81 (179)
T ss_pred cCCCCCcHHHHHHHHHHHHHHcC-----------CCH----HHHHHHHHHhcchhhhcc-cccc-cccCCCccHHHHHHH
Confidence 44556799999999999887642 111 257899999999975322 1111 122446789988877
Q ss_pred HHHHh
Q psy13612 127 VLDYL 131 (294)
Q Consensus 127 i~~~l 131 (294)
+++..
T Consensus 82 ~Lr~~ 86 (179)
T TIGR03276 82 YLREL 86 (179)
T ss_pred HHHHH
Confidence 66543
No 19
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=97.55 E-value=0.00029 Score=67.55 Aligned_cols=63 Identities=17% Similarity=0.135 Sum_probs=42.4
Q ss_pred hhhhccCce--eeeccCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHhhhhcCCCCCCchh
Q psy13612 35 RNIKQTSTT--YLVYPGACHNRFEHSLGVSYLGGCMVDALVHNTPGLHITAEEKLSVELAGLCHDLGHGPFSHTW 107 (294)
Q Consensus 35 r~I~QLg~~--~~VyP~a~HtRfeHSLGV~hla~~~~~~l~~~~~~~~i~~~~~~~v~iAALLHDiGHgPFSH~~ 107 (294)
.+|++.|+= ..++--....|+.||++|+.+|..+++.+. .++ ..+.+||||||||-.-....+
T Consensus 176 ~YI~~~~LY~e~~l~~~~~~~~~~HSl~VA~~A~~LA~~~g-------~d~---~~a~~AGLLHDIGK~~~~~~~ 240 (342)
T PRK07152 176 DYINENFLYLEDILKSFLDEYRYKHCLRVAQLAAELAKKNN-------LDP---KKAYYAGLYHDITKEWDEEKH 240 (342)
T ss_pred HHHHHcCccccHHHHHHhhHHHHHHHHHHHHHHHHHHHHhC-------cCH---HHHHHHHHHHHhhccCCHHHH
Confidence 446665541 123333356799999999999999998753 233 347899999999986433333
No 20
>PRK12703 tRNA 2'-O-methylase; Reviewed
Probab=97.42 E-value=0.00035 Score=67.08 Aligned_cols=39 Identities=23% Similarity=0.309 Sum_probs=31.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHhhhhcCCCC
Q psy13612 54 RFEHSLGVSYLGGCMVDALVHNTPGLHITAEEKLSVELAGLCHDLGHGP 102 (294)
Q Consensus 54 RfeHSLGV~hla~~~~~~l~~~~~~~~i~~~~~~~v~iAALLHDiGHgP 102 (294)
.++||+.|+.+|..+++.+ +. |...+.+||||||||...
T Consensus 188 l~~Hs~rVa~lA~~LA~~~-------~~---D~~ll~aAALLHDIGK~k 226 (339)
T PRK12703 188 LIRHVKTVYKLAMRIADCI-------NA---DRRLVAAGALLHDIGRTK 226 (339)
T ss_pred HHHHHHHHHHHHHHHHHHc-------CC---CHHHHHHHHHHHhccccc
Confidence 5899999999999998763 12 334678999999999754
No 21
>COG1713 Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]
Probab=97.33 E-value=0.00015 Score=63.91 Aligned_cols=38 Identities=34% Similarity=0.458 Sum_probs=30.5
Q ss_pred CchhhHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHhhhhcCC
Q psy13612 53 NRFEHSLGVSYLGGCMVDALVHNTPGLHITAEEKLSVELAGLCHDLGH 100 (294)
Q Consensus 53 tRfeHSLGV~hla~~~~~~l~~~~~~~~i~~~~~~~v~iAALLHDiGH 100 (294)
-||+|||||+..|.++++.... + ..-..+||++||++-
T Consensus 17 kR~~H~l~V~~~A~~LA~~y~~-------d---~~kA~~AgilHD~aK 54 (187)
T COG1713 17 KRFEHCLGVAETAIELAEAYGL-------D---PEKAYLAGILHDIAK 54 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC-------C---HHHHHHHHHHHHHHh
Confidence 4999999999999999976432 2 223789999999984
No 22
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=97.13 E-value=0.0012 Score=66.80 Aligned_cols=153 Identities=16% Similarity=0.185 Sum_probs=80.1
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHhhhhcCCCCCCchhhHhhhccCCCCccccccHHHHHHh
Q psy13612 52 HNRFEHSLGVSYLGGCMVDALVHNTPGLHITAEEKLSVELAGLCHDLGHGPFSHTWEKFLRRFDSHWKHEQGSEEVLDYL 131 (294)
Q Consensus 52 HtRfeHSLGV~hla~~~~~~l~~~~~~~~i~~~~~~~v~iAALLHDiGHgPFSH~~E~~l~~~~~~~~HE~~s~~i~~~l 131 (294)
.+.++||+.|+.+|..++..+. ++.. .+..||||||||.. +.|.. ..+|...+..+++
T Consensus 328 ~~~l~Hs~~VA~lA~~LA~~lg-------ld~~---~a~~AGLLHDIGK~-~~~e~---------~~~H~~~Ga~ll~-- 385 (514)
T TIGR03319 328 QNVLQHSIEVAHLAGIMAAELG-------EDVK---LAKRAGLLHDIGKA-VDHEV---------EGSHVEIGAELAK-- 385 (514)
T ss_pred ccHHHHHHHHHHHHHHHHHHhC-------cCHH---HHHHHHHHHhcCcc-cchhh---------cccHHHHHHHHHH--
Confidence 3468999999999999998752 3332 35689999999985 22211 2357777665443
Q ss_pred hhcccchhHHhhcCCCHHHHHHHHhCCCCCCCCchhhHHHhhhcCCCCCCccccccccccccccccccCccHHHHhhhce
Q psy13612 132 IEDNKLGPLFESYNLNLNLIKELIRGGGESLPADKRFLYQIIANKETDIDVDKWDYFLRDGHQLNLKITFDYRRLLSFCT 211 (294)
Q Consensus 132 i~~~~l~~~l~~~~~~~~~I~~~I~g~~~~~~~~~~~l~~Ivs~~~~~lDaDrlDYl~RDs~~~G~~~~~D~~rLi~~~~ 211 (294)
+++++ ..|...|...-... .+.+.+..||.-- ..++++| .|-.+++...-+..--+++.+.+.+.
T Consensus 386 -----------~~~~~-~~V~~aI~~HH~~~-~~~~~~a~IV~~A-D~lsa~r-pgar~e~~~~~~~rl~~le~i~~~~~ 450 (514)
T TIGR03319 386 -----------KYKES-PEVVNAIAAHHGDV-EPTSIEAVLVAAA-DALSAAR-PGARRESLENYIKRLEKLEEIANSFE 450 (514)
T ss_pred -----------HcCCC-HHHHHHHHHhCCCC-CCCCHHHHHHHHH-HHhcCCC-CCCcccCHHHHHHHHHHHHHHHHhCC
Confidence 45544 44556665433221 2334455666420 0233333 23333322221111223444444332
Q ss_pred eeecC----CCCCceEEeccccHHHHHHHHHHHH
Q psy13612 212 VVKRP----TDSGPTIAFRNKEASNIFDMFRVRA 241 (294)
Q Consensus 212 v~~~~----~~g~~~l~~~~k~~~~ie~~~~~R~ 241 (294)
-++.. .+-+.++.+...-+++.+....+|.
T Consensus 451 gv~~~~aiqaGreirv~v~~~~v~d~~~~~la~~ 484 (514)
T TIGR03319 451 GVEKSYAIQAGREIRVMVKPEKISDDQAVVLARD 484 (514)
T ss_pred CchhhhhhhcCcEEEEEecCCcCChHHHHHHHHH
Confidence 21110 1222356667777777777666664
No 23
>PRK00106 hypothetical protein; Provisional
Probab=97.00 E-value=0.0015 Score=66.43 Aligned_cols=154 Identities=15% Similarity=0.143 Sum_probs=81.2
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHhhhhcCCCCCCchhhHhhhccCCCCccccccHHHHHH
Q psy13612 51 CHNRFEHSLGVSYLGGCMVDALVHNTPGLHITAEEKLSVELAGLCHDLGHGPFSHTWEKFLRRFDSHWKHEQGSEEVLDY 130 (294)
Q Consensus 51 ~HtRfeHSLGV~hla~~~~~~l~~~~~~~~i~~~~~~~v~iAALLHDiGHgPFSH~~E~~l~~~~~~~~HE~~s~~i~~~ 130 (294)
..+-++||++|+.+|+.++..+. . +...+.+||||||||-. +.|.+ ..+|-..+..++
T Consensus 348 ~qnl~~HSv~VA~lA~~lA~~lg-------l---d~e~a~~AGLLHDIGK~-v~~e~---------~g~Ha~iGa~ll-- 405 (535)
T PRK00106 348 GQNVLRHSVEVGKLAGILAGELG-------E---NVALARRAGFLHDMGKA-IDREV---------EGSHVEIGMEFA-- 405 (535)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhC-------C---CHHHHHHHHHHHhccCc-cCccc---------cCChHHHHHHHH--
Confidence 34579999999999999997652 2 23457899999999987 22211 225877776654
Q ss_pred hhhcccchhHHhhcCCCHHHHHHHHhCCCCCCCCchhhHHHhhhcCCCCCCccccccccccccccccccCccHHHHhhhc
Q psy13612 131 LIEDNKLGPLFESYNLNLNLIKELIRGGGESLPADKRFLYQIIANKETDIDVDKWDYFLRDGHQLNLKITFDYRRLLSFC 210 (294)
Q Consensus 131 li~~~~l~~~l~~~~~~~~~I~~~I~g~~~~~~~~~~~l~~Ivs~~~~~lDaDrlDYl~RDs~~~G~~~~~D~~rLi~~~ 210 (294)
++|+++ +.|...|.+.-...+ +.+.+..||.- -..+++.| -|-.|.+...-+..--+++.+..+.
T Consensus 406 -----------~~~~~~-~~v~~aI~~HH~~~~-~~s~~a~IV~~-AD~lsa~R-pgar~~s~~~~i~rl~~lE~ia~~~ 470 (535)
T PRK00106 406 -----------RKYKEH-PVVVNTIASHHGDVE-PESVIAVIVAA-ADALSSAR-PGARNESMENYIKRLRDLEEIANSF 470 (535)
T ss_pred -----------HHcCCC-HHHHHHHHHhCCCCC-CCChHHHHHHH-HHHhccCC-CCCCcCCHHHHHHHHHHHHHHHhcC
Confidence 355654 345566654332222 23445566642 01233333 2222332222222223344444333
Q ss_pred eeeecC----CCCCceEEeccccHHHHHHHHHHHH
Q psy13612 211 TVVKRP----TDSGPTIAFRNKEASNIFDMFRVRA 241 (294)
Q Consensus 211 ~v~~~~----~~g~~~l~~~~k~~~~ie~~~~~R~ 241 (294)
.-|... .+-+.++.+..+.+.+.+....+|.
T Consensus 471 ~gV~~~yaiqaGREiRviV~p~~v~D~~~~~la~~ 505 (535)
T PRK00106 471 DGVQNSFALQAGREIRIMVQPEKISDDQVTILAHK 505 (535)
T ss_pred CcHHHHHHHhcCCeEEEEecCCcCChHHHHHHHHH
Confidence 211110 1222356666666777666666653
No 24
>PF00233 PDEase_I: 3'5'-cyclic nucleotide phosphodiesterase; InterPro: IPR002073 The cyclic nucleotide phosphodiesterases (PDE) comprise a group of enzymes that degrade the phosphodiester bond in the second messenger molecules cAMP and cGMP. They are divided into 11 families. They regulate the localisation, duration and amplitude of cyclic nucleotide signalling within subcellular domains. PDEs are therefore important for signal transduction. PDE enzymes are often targets for pharmacological inhibition due to their unique tissue distribution, structural properties, and functional properties. Inhibitors include: Roflumilast for chronic obstructive pulmonary disease and asthma [], Sildenafil for erectile dysfunction [] and Cilostazol for peripheral arterial occlusive disease [], amongst others. Retinal 3',5'-cGMP phosphodiesterase is located in photoreceptor outer segments: it is light activated, playing a pivotal role in signal transduction. In rod cells, PDE is oligomeric, comprising an alpha-, a beta- and 2 gamma-subunits, while in cones, PDE is a homodimer of alpha chains, which are associated with several smaller subunits. Both rod and cone PDEs catalyse the hydrolysis of cAMP or cGMP to the corresponding nucleoside 5' monophosphates, both enzymes also binding cGMP with high affinity. The cGMP-binding sites are located in the N-terminal half of the protein sequence, while the catalytic core resides in the C-terminal portion. This entry represents the catalytic domain of PDE which is multihelical and can be divided into three subdomains.; GO: 0004114 3',5'-cyclic-nucleotide phosphodiesterase activity, 0007165 signal transduction; PDB: 3I8V_A 3TVX_A 2QYK_A 1ZKL_A 3G3N_A 4DFF_B 2OUS_B 3SNL_A 2OUY_A 2OUP_B ....
Probab=96.87 E-value=0.002 Score=58.81 Aligned_cols=54 Identities=22% Similarity=0.319 Sum_probs=42.4
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHhhhhcCCCCCCchhhH
Q psy13612 52 HNRFEHSLGVSYLGGCMVDALVHNTPGLHITAEEKLSVELAGLCHDLGHGPFSHTWEK 109 (294)
Q Consensus 52 HtRfeHSLGV~hla~~~~~~l~~~~~~~~i~~~~~~~v~iAALLHDiGHgPFSH~~E~ 109 (294)
|+ |.|+.-|++.+..++....-. ..+++.|..++-+|||+||+||+=++-.|.-
T Consensus 2 HN-~~Ha~dV~q~~~~ll~~~~~~---~~l~~~e~~alliAal~HDv~HpG~~N~flv 55 (237)
T PF00233_consen 2 HN-FRHAADVLQFVYYLLSNGGLR---EYLSPLEIFALLIAALCHDVDHPGVNNAFLV 55 (237)
T ss_dssp SS-HHHHHHHHHHHHHHHHHGGGG---TTS-HHHHHHHHHHHHHTTTT-SSSCHHHHH
T ss_pred CC-HHHHHHHHHHHHHHHHccCcc---ccCCHHHHHHHHHHHHHhcCCCCccccchhh
Confidence 67 899999999999998653321 3478889999999999999999988877764
No 25
>PRK12704 phosphodiesterase; Provisional
Probab=96.72 E-value=0.0033 Score=63.79 Aligned_cols=88 Identities=23% Similarity=0.327 Sum_probs=55.9
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHhhhhcCCCCCCchhhHhhhccCCCCccccccHHHHHHh
Q psy13612 52 HNRFEHSLGVSYLGGCMVDALVHNTPGLHITAEEKLSVELAGLCHDLGHGPFSHTWEKFLRRFDSHWKHEQGSEEVLDYL 131 (294)
Q Consensus 52 HtRfeHSLGV~hla~~~~~~l~~~~~~~~i~~~~~~~v~iAALLHDiGHgPFSH~~E~~l~~~~~~~~HE~~s~~i~~~l 131 (294)
.+-+.||+.|+.+|..++..+ +++.. .+..||||||||-.| .|- ...+|-..+..+++
T Consensus 334 qn~l~Hs~~Va~lA~~lA~~l-------gld~~---~a~~AgLLHDIGK~~-~~e---------~~~~H~~iGa~il~-- 391 (520)
T PRK12704 334 QNVLQHSIEVAHLAGLMAAEL-------GLDVK---LAKRAGLLHDIGKAL-DHE---------VEGSHVEIGAELAK-- 391 (520)
T ss_pred CcHhHHHHHHHHHHHHHHHHh-------CcCHH---HHHHHHHHHccCcCc-ccc---------ccCCHHHHHHHHHH--
Confidence 345689999999999999764 33333 367899999999986 221 12457777766543
Q ss_pred hhcccchhHHhhcCCCHHHHHHHHhCCCCCCCCchhhHHHhhh
Q psy13612 132 IEDNKLGPLFESYNLNLNLIKELIRGGGESLPADKRFLYQIIA 174 (294)
Q Consensus 132 i~~~~l~~~l~~~~~~~~~I~~~I~g~~~~~~~~~~~l~~Ivs 174 (294)
+++.+ ..|+..|...... ..+.+.+..||+
T Consensus 392 -----------~~~~~-~~v~~aI~~HHe~-~~~~~~~a~IV~ 421 (520)
T PRK12704 392 -----------KYKES-PVVINAIAAHHGD-EEPTSIEAVLVA 421 (520)
T ss_pred -----------HcCCC-HHHHHHHHHcCCC-CCCCCHHHHHHH
Confidence 44543 4566666554332 223445667776
No 26
>TIGR00277 HDIG uncharacterized domain HDIG. This domain is found in a few known nucleotidyltransferes and in a large number of uncharacterized proteins. It contains four widely separated His residues, the second of which is part of an invariant dipeptide His-Asp in a region matched approximately by the motif HDIG.
Probab=96.59 E-value=0.0024 Score=46.78 Aligned_cols=39 Identities=28% Similarity=0.392 Sum_probs=30.3
Q ss_pred CchhhHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHhhhhcCCC
Q psy13612 53 NRFEHSLGVSYLGGCMVDALVHNTPGLHITAEEKLSVELAGLCHDLGHG 101 (294)
Q Consensus 53 tRfeHSLGV~hla~~~~~~l~~~~~~~~i~~~~~~~v~iAALLHDiGHg 101 (294)
..+.|++.|+.+|..+++.+. .+. ..+.+||||||||-.
T Consensus 4 ~~~~H~~~v~~~a~~la~~~~-------~~~---~~l~~AalLHDiG~~ 42 (80)
T TIGR00277 4 NVLQHSLEVAKLAEALARELG-------LDV---ELARRGALLHDIGKP 42 (80)
T ss_pred hHHHHHHHHHHHHHHHHHHcC-------CCH---HHHHHHHHHHccCCc
Confidence 457899999999999986532 222 247899999999975
No 27
>PRK13480 3'-5' exoribonuclease YhaM; Provisional
Probab=96.57 E-value=0.0046 Score=59.00 Aligned_cols=66 Identities=30% Similarity=0.503 Sum_probs=45.9
Q ss_pred hcCHHHHHh-hhh-hccCceeeeccCCC--C-----CchhhHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHhhh
Q psy13612 26 IDTPQFQRL-RNI-KQTSTTYLVYPGAC--H-----NRFEHSLGVSYLGGCMVDALVHNTPGLHITAEEKLSVELAGLCH 96 (294)
Q Consensus 26 Idtp~FQRL-r~I-~QLg~~~~VyP~a~--H-----tRfeHSLGV~hla~~~~~~l~~~~~~~~i~~~~~~~v~iAALLH 96 (294)
|.+|..++| +.+ +...-.++.+|.|. | .=.+||+.|+.+|..++.. +|.+ ++.++-++||||
T Consensus 123 i~~~~l~~l~~~~~~~~~~~f~~~PAa~~~HHay~GGLleHtl~v~~~~~~l~~~----y~~~-----n~dll~agalLH 193 (314)
T PRK13480 123 MENPNIQRITRHLLKKYQEEFLDYPAATKNHHEFVSGLAYHVVSMLRLAKSICDL----YPSL-----NKDLLYAGIILH 193 (314)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhCChHhhcccccccHHHHHHHHHHHHHHHHHHh----cccc-----CHHHHHHHHHHH
Confidence 567777775 322 23344567889884 3 3368999999999998853 3432 344688999999
Q ss_pred hcCC
Q psy13612 97 DLGH 100 (294)
Q Consensus 97 DiGH 100 (294)
|||-
T Consensus 194 DiGK 197 (314)
T PRK13480 194 DLGK 197 (314)
T ss_pred Hhhh
Confidence 9995
No 28
>TIGR01596 cas3_HD CRISPR-associated endonuclease Cas3-HD. CRISPR/Cas systems are widespread, mobile systems for host defense against invasive elements such as phage. In these systems, Cas3 designates one of the core proteins shared widely by multiple types of CRISPR/Cas system. This model represents an HD-like endonuclease that occurs either separately or as the N-terminal region of Cas3, the helicase-containing CRISPR-associated protein.
Probab=96.39 E-value=0.0052 Score=52.37 Aligned_cols=70 Identities=23% Similarity=0.275 Sum_probs=46.3
Q ss_pred hhHHHHHHHHHHHHH---HHHHcCCCCCCCHHHHHHHHHHHhhhhcCCCCCCchhhHhhh-----ccCCCCccccccHHH
Q psy13612 56 EHSLGVSYLGGCMVD---ALVHNTPGLHITAEEKLSVELAGLCHDLGHGPFSHTWEKFLR-----RFDSHWKHEQGSEEV 127 (294)
Q Consensus 56 eHSLGV~hla~~~~~---~l~~~~~~~~i~~~~~~~v~iAALLHDiGHgPFSH~~E~~l~-----~~~~~~~HE~~s~~i 127 (294)
+|++.|+.+|..+.. .+... +......++.+||++||||- ++-.|...+. .......|+..|..+
T Consensus 3 ~H~~~v~~~a~~l~~~~~~~~~~-----~~~~~~~~~~~~~~lHDiGK--~~~~FQ~~~~~~~~~~~~~~~~H~~~s~~~ 75 (177)
T TIGR01596 3 EHLLDVAAVAEKLKNLDIVIADL-----IGKLLRELLDLLALLHDIGK--INPGFQAKLMKAYKRGRRVASRHSLLSAKL 75 (177)
T ss_pred HHHHHHHHHHHHHhcccHHHHHH-----HhhHHHHHHHHHHHHccCcc--CCHHHHHHhhcccccccCCCCCHHHHHHHH
Confidence 799999999987641 11111 11134567899999999997 4445666441 122356799999888
Q ss_pred HHHhh
Q psy13612 128 LDYLI 132 (294)
Q Consensus 128 ~~~li 132 (294)
+..+.
T Consensus 76 ~~~~~ 80 (177)
T TIGR01596 76 LDALL 80 (177)
T ss_pred HHHHH
Confidence 76644
No 29
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=96.38 E-value=0.0091 Score=62.58 Aligned_cols=87 Identities=20% Similarity=0.215 Sum_probs=54.5
Q ss_pred HHHHhcCH-H-HHHhhhhhccCceeeeccCC-------------CCCchhhHHHHHHHHHHHHHHHHHcCCCCCCCHHHH
Q psy13612 22 CVAIIDTP-Q-FQRLRNIKQTSTTYLVYPGA-------------CHNRFEHSLGVSYLGGCMVDALVHNTPGLHITAEEK 86 (294)
Q Consensus 22 ~~~IIdtp-~-FQRLr~I~QLg~~~~VyP~a-------------~HtRfeHSLGV~hla~~~~~~l~~~~~~~~i~~~~~ 86 (294)
..+|+.+| . +.=|+...++|.-..++|.- .+|=.+|+|-|...+..+...+ . ..
T Consensus 334 f~kiL~s~~~~~~~L~~M~~~GvL~~llPE~~~i~g~~Q~d~yH~ytVDeHTL~~l~~~~~~~~~~---------~--~~ 402 (693)
T PRK00227 334 FFRLLSSPVNSRRVIKQMDRHGLWERIVPEWDRIRGLMPREPSHIHTIDEHSLNTVANCALETVTV---------A--RP 402 (693)
T ss_pred HHHHHcCCCChHHHHHHHHHcCCHHHHhHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHhhhcc---------C--cc
Confidence 44566664 2 22356666666655445543 1255678888877665554221 1 22
Q ss_pred HHHHHHHhhhhcCCCCCCchhhHhhhccCCCCccccccHHHHHHhhh
Q psy13612 87 LSVELAGLCHDLGHGPFSHTWEKFLRRFDSHWKHEQGSEEVLDYLIE 133 (294)
Q Consensus 87 ~~v~iAALLHDiGHgPFSH~~E~~l~~~~~~~~HE~~s~~i~~~li~ 133 (294)
.++++||||||||-|. +.+|++.++++++.+.+
T Consensus 403 ~lL~LAALlHDIGKg~--------------g~dHs~~GA~~A~~i~~ 435 (693)
T PRK00227 403 DLLLLGALYHDIGKGY--------------PRPHEQVGAEMVARAAR 435 (693)
T ss_pred HHHHHHHHHHhhcCCC--------------CCChhHHHHHHHHHHHH
Confidence 3578999999999764 23699999998876443
No 30
>PRK04374 PII uridylyl-transferase; Provisional
Probab=96.30 E-value=0.012 Score=63.24 Aligned_cols=79 Identities=18% Similarity=0.089 Sum_probs=47.5
Q ss_pred CchhhHHHHHHHHHHHHHHH-HHcCCCC-----CCCHHHHHHHHHHHhhhhcCCCCCCchhhHhhhccCCCCccccccHH
Q psy13612 53 NRFEHSLGVSYLGGCMVDAL-VHNTPGL-----HITAEEKLSVELAGLCHDLGHGPFSHTWEKFLRRFDSHWKHEQGSEE 126 (294)
Q Consensus 53 tRfeHSLGV~hla~~~~~~l-~~~~~~~-----~i~~~~~~~v~iAALLHDiGHgPFSH~~E~~l~~~~~~~~HE~~s~~ 126 (294)
|=++|+|-|..-+..+...- ..+.|.. .+... .++++|||+||||-|- +.+|++.|++
T Consensus 449 tVd~Htl~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~--~lL~lAaLlHDIGKg~--------------~~dHs~~Ga~ 512 (869)
T PRK04374 449 TVDQHTLMVLRNIALFAAGRADERFSIAHEVWPRLRKP--ELLLLAGLFHDIAKGR--------------GGDHSELGAV 512 (869)
T ss_pred cHHHHHHHHHHHHHHHhccccccccccHHHHHhccCCc--cHHHHHHHHHhccCCC--------------CCChHHHhHH
Confidence 55788898887765543211 0001100 11222 2689999999999762 2369999999
Q ss_pred HHHHhhhcccchhHHhhcCCC---HHHHHHHHh
Q psy13612 127 VLDYLIEDNKLGPLFESYNLN---LNLIKELIR 156 (294)
Q Consensus 127 i~~~li~~~~l~~~l~~~~~~---~~~I~~~I~ 156 (294)
+++. ++++++++ .+.|+-+|.
T Consensus 513 ~a~~---------i~~Rl~l~~~~~~~v~~LV~ 536 (869)
T PRK04374 513 DARA---------FCLAHRLSEGDTELVTWLVE 536 (869)
T ss_pred HHHH---------HHHHcCCCHHHHHHHHHHHH
Confidence 9876 44556665 344555554
No 31
>PRK03381 PII uridylyl-transferase; Provisional
Probab=96.28 E-value=0.01 Score=63.10 Aligned_cols=87 Identities=14% Similarity=0.160 Sum_probs=51.9
Q ss_pred HHHHhcC--HHHHHhhhhhccCceeeeccCC-----------CC--CchhhHHHHHHHHHHHHHHHHHcCCCCCCCHHHH
Q psy13612 22 CVAIIDT--PQFQRLRNIKQTSTTYLVYPGA-----------CH--NRFEHSLGVSYLGGCMVDALVHNTPGLHITAEEK 86 (294)
Q Consensus 22 ~~~IIdt--p~FQRLr~I~QLg~~~~VyP~a-----------~H--tRfeHSLGV~hla~~~~~~l~~~~~~~~i~~~~~ 86 (294)
..+|+-+ +.+.=|+...+.|.-..++|.- .| |=.+|++-|..-+..+...+ .+.
T Consensus 374 f~kiL~~~~~~~~~l~~m~~~GvL~~~iPE~~~i~~~~Q~~~~H~ytVd~Htl~~l~~~~~~~~~~---------~~~-- 442 (774)
T PRK03381 374 LLVLLGAGPAAVAVIEALDRTGLWGRLLPEWEAVRDLPPRDPVHRWTVDRHLVETAVRAAALTRRV---------ARP-- 442 (774)
T ss_pred HHHHHcCCCchHHHHHHHHHhCCHHHhchhHHHhhCCCCCCCCccChHHHHHHHHHHHHHHHHhcc---------CCH--
Confidence 3455544 2222345555666665566652 12 22468888877665544322 112
Q ss_pred HHHHHHHhhhhcCCCCCCchhhHhhhccCCCCccccccHHHHHHhhh
Q psy13612 87 LSVELAGLCHDLGHGPFSHTWEKFLRRFDSHWKHEQGSEEVLDYLIE 133 (294)
Q Consensus 87 ~~v~iAALLHDiGHgPFSH~~E~~l~~~~~~~~HE~~s~~i~~~li~ 133 (294)
.++++||||||||-|. +.+|+..++++++.+.+
T Consensus 443 ~lL~lAaLlHDiGKg~--------------~~~Hs~~Ga~~a~~i~~ 475 (774)
T PRK03381 443 DLLLLGALLHDIGKGR--------------GGDHSVVGAELARQIGA 475 (774)
T ss_pred HHHHHHHHHHhhcCCC--------------CCChHHHHHHHHHHHHH
Confidence 3579999999999752 23699999988876543
No 32
>PRK05092 PII uridylyl-transferase; Provisional
Probab=96.16 E-value=0.015 Score=62.88 Aligned_cols=94 Identities=17% Similarity=0.178 Sum_probs=55.5
Q ss_pred HHhcCH--HHHHhhhhhccCceeeeccCC-----------CC--CchhhHHHHHHHHHHHHHHH-HHcCCCC-----CCC
Q psy13612 24 AIIDTP--QFQRLRNIKQTSTTYLVYPGA-----------CH--NRFEHSLGVSYLGGCMVDAL-VHNTPGL-----HIT 82 (294)
Q Consensus 24 ~IIdtp--~FQRLr~I~QLg~~~~VyP~a-----------~H--tRfeHSLGV~hla~~~~~~l-~~~~~~~-----~i~ 82 (294)
+|+-+| .+.-|+...++|.-..++|.- -| |=++|+|=|..-+..+...- ..+.|.. ++.
T Consensus 449 eil~~~~~~~~~l~~m~~~GvL~~~iPef~~i~~~~Q~d~~H~ytVd~Htl~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 528 (931)
T PRK05092 449 DILTSRRNPERVLRRMNEAGVLGRFIPDFGRIVAMMQFNMYHHYTVDEHTIRAIGVLAEIERGELADEHPLASELMPKIE 528 (931)
T ss_pred HHHcCCCchHHHHHHHHHhCChHHhcccHHhcccccccccceeccHhHHHHHHHHHHHHHhcccccccchhHHHHHHhcC
Confidence 355543 233366666777766666653 12 33489998887776664210 0111100 111
Q ss_pred HHHHHHHHHHHhhhhcCCCCCCchhhHhhhccCCCCccccccHHHHHHhhh
Q psy13612 83 AEEKLSVELAGLCHDLGHGPFSHTWEKFLRRFDSHWKHEQGSEEVLDYLIE 133 (294)
Q Consensus 83 ~~~~~~v~iAALLHDiGHgPFSH~~E~~l~~~~~~~~HE~~s~~i~~~li~ 133 (294)
...++++||||||||.|- +.+|++.++++++.+.+
T Consensus 529 --~~~~L~lAaLlHDIGKg~--------------~~dHs~~Ga~~a~~~~~ 563 (931)
T PRK05092 529 --SRRALYVAVLLHDIAKGR--------------PEDHSIAGARIARRLCP 563 (931)
T ss_pred --CHHHHHHHHHHHHhhcCC--------------CCCHHHHHHHHHHHHHH
Confidence 234689999999999862 24699999998876443
No 33
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=96.10 E-value=0.021 Score=61.32 Aligned_cols=110 Identities=16% Similarity=0.209 Sum_probs=62.0
Q ss_pred HHHHhcCHH--HHHhhhhhccCceeeeccCCC-----------C--CchhhHHHHHHHHHHHHHHHHH-cCCC-----CC
Q psy13612 22 CVAIIDTPQ--FQRLRNIKQTSTTYLVYPGAC-----------H--NRFEHSLGVSYLGGCMVDALVH-NTPG-----LH 80 (294)
Q Consensus 22 ~~~IIdtp~--FQRLr~I~QLg~~~~VyP~a~-----------H--tRfeHSLGV~hla~~~~~~l~~-~~~~-----~~ 80 (294)
..+|+.+|. ..=|+...+.|+-..++|.-. | |=++|+|=|..-+..+...-.. ..|. .+
T Consensus 390 f~kiL~~~~~~~~~l~~M~~~GvL~~~iPe~~~i~~~~Q~d~yH~ytVd~Htl~~l~~l~~~~~~~~~~~~~~~~~~~~~ 469 (854)
T PRK01759 390 FLRLFNQPNAIKRALVPMHQYGVLTAYLPQWKGIVGLMQFDLFHIYTVDEHTLRVMLKLESFLDEESAEQHPICHQIFSQ 469 (854)
T ss_pred HHHHHcCCCchHHHHHHHHHhCCHHHhChHHHheeeccCCcccccCcHHHHHHHHHHHHHHHhcccccccchhHHHHHHh
Confidence 345665532 222555555566555555421 2 5577989888866665421100 0000 01
Q ss_pred CCHHHHHHHHHHHhhhhcCCCCCCchhhHhhhccCCCCccccccHHHHHHhhhcccchhHHhhcCCC---HHHHHHHHh
Q psy13612 81 ITAEEKLSVELAGLCHDLGHGPFSHTWEKFLRRFDSHWKHEQGSEEVLDYLIEDNKLGPLFESYNLN---LNLIKELIR 156 (294)
Q Consensus 81 i~~~~~~~v~iAALLHDiGHgPFSH~~E~~l~~~~~~~~HE~~s~~i~~~li~~~~l~~~l~~~~~~---~~~I~~~I~ 156 (294)
+ ....++++|||+||||-|- +.+|++.|+++++.+ +++.+++ .+.|+-++.
T Consensus 470 ~--~~~~~L~lAaLlHDIGKG~--------------~~dHs~~Ga~~a~~i---------~~rl~l~~~~~~~v~~LV~ 523 (854)
T PRK01759 470 L--SDRTLLYIAALFHDIAKGR--------------GGDHAELGAVDMRQF---------AQQHGFDQREIETMAWLVQ 523 (854)
T ss_pred c--CCHHHHHHHHHHHhhcCCC--------------CCChhHHHHHHHHHH---------HHHcCCCHHHHHHHHHHHH
Confidence 1 1334689999999999853 226999999998764 4455555 344555544
No 34
>PRK03059 PII uridylyl-transferase; Provisional
Probab=96.06 E-value=0.018 Score=61.85 Aligned_cols=114 Identities=21% Similarity=0.162 Sum_probs=68.1
Q ss_pred hhHHHHhcCHH--HHHhhhhhccCceeeeccCCC-----------C--CchhhHHHHHHHHHHHHHHH-HHcCCCC----
Q psy13612 20 PICVAIIDTPQ--FQRLRNIKQTSTTYLVYPGAC-----------H--NRFEHSLGVSYLGGCMVDAL-VHNTPGL---- 79 (294)
Q Consensus 20 ~~~~~IIdtp~--FQRLr~I~QLg~~~~VyP~a~-----------H--tRfeHSLGV~hla~~~~~~l-~~~~~~~---- 79 (294)
....+|+.+|. +.=|+...+.|+...++|.-. | |=++|++-|..-+..+...- ....|..
T Consensus 392 ~ef~~iL~~~~~~~~~l~~m~~~GlL~~~lPe~~~i~~~~Q~~~~H~ytVd~Htl~~v~~l~~~~~~~~~~~~p~~~~~~ 471 (856)
T PRK03059 392 ALFMQILQQPRGITHALRLMNQTSVLGRYLPNFRRIVGQMQHDLFHVYTVDQHILMVLRNLRRFAMAEHAHEYPFCSQLI 471 (856)
T ss_pred HHHHHHHcCCCchHHHHHHHHHhCCHHHhCchHhheeeeecccccccCcHhHHHHHHHHHHHHhhccccccccchHHHHH
Confidence 44556777644 333666777777665555431 2 55678888887776553210 0000100
Q ss_pred -CCCHHHHHHHHHHHhhhhcCCCCCCchhhHhhhccCCCCccccccHHHHHHhhhcccchhHHhhcCCC---HHHHHHHH
Q psy13612 80 -HITAEEKLSVELAGLCHDLGHGPFSHTWEKFLRRFDSHWKHEQGSEEVLDYLIEDNKLGPLFESYNLN---LNLIKELI 155 (294)
Q Consensus 80 -~i~~~~~~~v~iAALLHDiGHgPFSH~~E~~l~~~~~~~~HE~~s~~i~~~li~~~~l~~~l~~~~~~---~~~I~~~I 155 (294)
++. ...++.+|||+||||-|- +.+|+..++++++.+ +++.|++ .+.|+.+|
T Consensus 472 ~~~~--~~~lL~LAaLlHDIGKg~--------------~~~Hs~~GA~~A~~i---------l~rl~l~~~~~~~V~~LV 526 (856)
T PRK03059 472 ANFD--RPWLLYVAALFHDIAKGR--------------GGDHSTLGAVDARRF---------CRQHGLAREDAELVVWLV 526 (856)
T ss_pred HhcC--ChhHHHHHHHHHhhccCC--------------CCCchHHHHHHHHHH---------HHHcCCCHHHHHHHHHHH
Confidence 011 235789999999999752 237999999998764 4556665 45566666
Q ss_pred hCC
Q psy13612 156 RGG 158 (294)
Q Consensus 156 ~g~ 158 (294)
...
T Consensus 527 ~~H 529 (856)
T PRK03059 527 EHH 529 (856)
T ss_pred HHh
Confidence 533
No 35
>COG2206 c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]
Probab=96.05 E-value=0.0086 Score=57.58 Aligned_cols=54 Identities=26% Similarity=0.357 Sum_probs=42.3
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHhhhhcCCCCCCchhhHhhhccC
Q psy13612 51 CHNRFEHSLGVSYLGGCMVDALVHNTPGLHITAEEKLSVELAGLCHDLGHGPFSHTWEKFLRRFD 115 (294)
Q Consensus 51 ~HtRfeHSLGV~hla~~~~~~l~~~~~~~~i~~~~~~~v~iAALLHDiGHgPFSH~~E~~l~~~~ 115 (294)
..| +.||.-|+.+|..+.+. +++++.+...+.+||||||||-- +.-+..+.+++
T Consensus 147 ~~t-~~Hs~~va~~a~~ia~~-------lgl~~~~i~~l~~aalLHDIGKi---~ip~~IL~K~g 200 (344)
T COG2206 147 DYT-YGHSVRVAELAEAIAKK-------LGLSEEKIEELALAGLLHDIGKI---GIPDSILNKPG 200 (344)
T ss_pred hhH-HHHHHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHhhcccc---cCCHHHhCCCC
Confidence 345 89999999999999987 56888888899999999999953 23344555554
No 36
>TIGR03760 ICE_TraI_Pfluor integrating conjugative element relaxase, PFL_4751 family. Members of this protein family are the TraI putative relaxases required for transfer by a subclass of integrating conjugative elements (ICE) as found in Pseudomonas fluorescens Pf-5, and understood from study of two related ICE, SXT and R391. This model represents the N-terminal domain. Note that no homology is detected to the similarly named TraI relaxase of the F plasmid.
Probab=95.83 E-value=0.012 Score=53.43 Aligned_cols=53 Identities=28% Similarity=0.363 Sum_probs=35.3
Q ss_pred eccCCC---CCc----hhhHHHHHHHHHHHHHHHHHcCCCCCCCHHH--------HHHHHHHHhhhhcCCC
Q psy13612 46 VYPGAC---HNR----FEHSLGVSYLGGCMVDALVHNTPGLHITAEE--------KLSVELAGLCHDLGHG 101 (294)
Q Consensus 46 VyP~a~---HtR----feHSLGV~hla~~~~~~l~~~~~~~~i~~~~--------~~~v~iAALLHDiGHg 101 (294)
.+|.+. |+. ++|||.|+..|.++.+...- | .+.+.++ ...+-+||||||||..
T Consensus 53 ~~PAs~~~Hha~~GGLl~HtLev~~~a~~l~~~y~~--p-~~~~~e~~~~~~~~w~~~~~~aaLlHDlgK~ 120 (218)
T TIGR03760 53 QLPASENHHHAYLGGLLDHTLEVTAAAVRLSKGYLL--P-PGAAPEEQAAQSDAWNAAVFYAALLHDLGKL 120 (218)
T ss_pred hCCCCCcCCccccchHHHHHHHHHHHHHHHHhhcCC--C-CCCCHHHHHHhhHHHHHHHHHHHHHHhhhhh
Confidence 467663 333 79999999999998864311 1 1222221 2368899999999975
No 37
>PRK12705 hypothetical protein; Provisional
Probab=95.79 E-value=0.0088 Score=60.49 Aligned_cols=88 Identities=20% Similarity=0.335 Sum_probs=53.4
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHhhhhcCCCCCCchhhHhhhccCCCCccccccHHHHHHh
Q psy13612 52 HNRFEHSLGVSYLGGCMVDALVHNTPGLHITAEEKLSVELAGLCHDLGHGPFSHTWEKFLRRFDSHWKHEQGSEEVLDYL 131 (294)
Q Consensus 52 HtRfeHSLGV~hla~~~~~~l~~~~~~~~i~~~~~~~v~iAALLHDiGHgPFSH~~E~~l~~~~~~~~HE~~s~~i~~~l 131 (294)
.+-++||+.|+.+|..++..+ ++++. .+..||||||||... |. .....|...+..++
T Consensus 322 qnvl~HSl~VA~lA~~LA~~l-------Gld~d---~a~~AGLLHDIGK~i-----e~-----e~~~~H~~iGaeLl--- 378 (508)
T PRK12705 322 QNVLSHSLEVAHLAGIIAAEI-------GLDPA---LAKRAGLLHDIGKSI-----DR-----ESDGNHVEIGAELA--- 378 (508)
T ss_pred chHHHHHHHHHHHHHHHHHHc-------CcCHH---HHHHHHHHHHcCCcc-----hh-----hhcccHHHHHHHHH---
Confidence 446899999999999999764 33332 346799999999852 21 11346777666543
Q ss_pred hhcccchhHHhhcCCCHHHHHHHHhCCCCCCCCchhhHHHhhh
Q psy13612 132 IEDNKLGPLFESYNLNLNLIKELIRGGGESLPADKRFLYQIIA 174 (294)
Q Consensus 132 i~~~~l~~~l~~~~~~~~~I~~~I~g~~~~~~~~~~~l~~Ivs 174 (294)
++++++ ..+...|...-.+. .+.+....||+
T Consensus 379 ----------kk~~~p-~~Vv~aI~~HHe~~-~~~~~~a~IVa 409 (508)
T PRK12705 379 ----------RKFNEP-DEVINAIASHHNKV-NPETVYSVLVQ 409 (508)
T ss_pred ----------HhcCCC-HHHHHHHHHhCCCC-CCCCHHHHHHH
Confidence 345554 34455555433221 12334556665
No 38
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=95.71 E-value=0.02 Score=61.72 Aligned_cols=112 Identities=16% Similarity=0.165 Sum_probs=66.5
Q ss_pred hhHHHHhcCHH--HHHhhhhhccCceeeeccCC-----------C--CCchhhHHHHHHHHHHHHHHH-HHcCCCC----
Q psy13612 20 PICVAIIDTPQ--FQRLRNIKQTSTTYLVYPGA-----------C--HNRFEHSLGVSYLGGCMVDAL-VHNTPGL---- 79 (294)
Q Consensus 20 ~~~~~IIdtp~--FQRLr~I~QLg~~~~VyP~a-----------~--HtRfeHSLGV~hla~~~~~~l-~~~~~~~---- 79 (294)
....+|+.+|. +.=|+...++|+...++|.- - +|=.+|+|-|..-+..+...- ....|..
T Consensus 412 ~~f~~iL~~~~~~~~~l~~M~~~GvL~~~iPe~~~i~~~~Q~d~yH~ytVdeHtl~~v~~l~~l~~~~~~~~~p~~~~l~ 491 (895)
T PRK00275 412 SLFIELFKCPIGIHRNLRRMNRYGILGRYLPEFGHIVGQMQHDLFHIYTVDAHTLNLIKNLRKLRYPEVSEKFPLASKLM 491 (895)
T ss_pred HHHHHHHcCCCchHHHHHHHHHcCCHHHhCchHhhEeeeccCcccccCcHHHHHHHHHHHHHHhhcccccccCchHHHHH
Confidence 44556777644 33367777777765555543 1 255789998887776654210 0011100
Q ss_pred -CCCHHHHHHHHHHHhhhhcCCCCCCchhhHhhhccCCCCccccccHHHHHHhhhcccchhHHhhcCCC---HHHHHHHH
Q psy13612 80 -HITAEEKLSVELAGLCHDLGHGPFSHTWEKFLRRFDSHWKHEQGSEEVLDYLIEDNKLGPLFESYNLN---LNLIKELI 155 (294)
Q Consensus 80 -~i~~~~~~~v~iAALLHDiGHgPFSH~~E~~l~~~~~~~~HE~~s~~i~~~li~~~~l~~~l~~~~~~---~~~I~~~I 155 (294)
.+. ...++++|||+||||-|- +.+|++.++++++.+ +++.|++ .+.|+-+|
T Consensus 492 ~~l~--~~~lL~lAaLlHDIGKg~--------------~~~Hs~~Ga~~a~~i---------~~rl~l~~~~~~~v~~LV 546 (895)
T PRK00275 492 GRLP--KPELLYIAGLYHDIGKGR--------------GGDHSELGAVDAEAF---------CQRHQLPAWDTRLVVWLV 546 (895)
T ss_pred HhcC--CHHHHHHHHHHHhhhcCC--------------CCCHHHHHHHHHHHH---------HHHcCCCHHHHHHHHHHH
Confidence 011 223689999999999862 226999999998764 4555655 34455554
Q ss_pred h
Q psy13612 156 R 156 (294)
Q Consensus 156 ~ 156 (294)
.
T Consensus 547 ~ 547 (895)
T PRK00275 547 E 547 (895)
T ss_pred H
Confidence 4
No 39
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=95.57 E-value=0.026 Score=60.51 Aligned_cols=95 Identities=19% Similarity=0.182 Sum_probs=57.1
Q ss_pred HHHHhcCH--HHHHhhhhhccCceeeeccCC-----------CC--CchhhHHHHHHHHHHHHHHH-HHcCCC-----CC
Q psy13612 22 CVAIIDTP--QFQRLRNIKQTSTTYLVYPGA-----------CH--NRFEHSLGVSYLGGCMVDAL-VHNTPG-----LH 80 (294)
Q Consensus 22 ~~~IIdtp--~FQRLr~I~QLg~~~~VyP~a-----------~H--tRfeHSLGV~hla~~~~~~l-~~~~~~-----~~ 80 (294)
..+|+.+| ...=|+...++|.-..++|.- .| |=++|++=|+..+..+.... ....|. -+
T Consensus 382 f~~iL~~~~~~~~~l~~m~~~gvL~~~iPe~~~i~~~~Q~~~~H~~tVd~Htl~~l~~~~~~~~~~~~~~~~~~~~~~~~ 461 (850)
T TIGR01693 382 FLELLTSGNGTVRALRAMNRAGVLGRFLPEWGRIVGQMQFDLFHVYTVDEHTLRTVVHLAPFARGRLAREHPLASELMPK 461 (850)
T ss_pred HHHHHcCCCchHHHHHHHHHhCCHHHhCchHhhheeccccCceeecchhHHHHHHHHHHHHHhccccccccccHHHHHhc
Confidence 34566543 344456666666665556653 22 23479999888887765321 011110 01
Q ss_pred CCHHHHHHHHHHHhhhhcCCCCCCchhhHhhhccCCCCccccccHHHHHHhh
Q psy13612 81 ITAEEKLSVELAGLCHDLGHGPFSHTWEKFLRRFDSHWKHEQGSEEVLDYLI 132 (294)
Q Consensus 81 i~~~~~~~v~iAALLHDiGHgPFSH~~E~~l~~~~~~~~HE~~s~~i~~~li 132 (294)
++ +..++++||||||||.|- +.+|+..|+.+++.+.
T Consensus 462 ~~--~~~~L~lAaLlHDiGKg~--------------~~~H~~~Ga~~a~~~~ 497 (850)
T TIGR01693 462 IE--DPELLYLAALLHDIGKGR--------------GGDHSVLGAEDARDVC 497 (850)
T ss_pred cC--CHHHHHHHHHHHHHhcCC--------------CCCHHHHHHHHHHHHH
Confidence 22 244689999999999862 2369999999887644
No 40
>COG4341 Predicted HD phosphohydrolase [General function prediction only]
Probab=95.49 E-value=0.0071 Score=52.29 Aligned_cols=40 Identities=30% Similarity=0.394 Sum_probs=29.7
Q ss_pred ccCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHhhhhcCCC
Q psy13612 47 YPGACHNRFEHSLGVSYLGGCMVDALVHNTPGLHITAEEKLSVELAGLCHDLGHG 101 (294)
Q Consensus 47 yP~a~HtRfeHSLGV~hla~~~~~~l~~~~~~~~i~~~~~~~v~iAALLHDiGHg 101 (294)
|-|---|+.||+|-.+.||.+--. + ..+-.|||||||||.
T Consensus 24 y~ge~VTq~eHaLQ~AtlAerdGa-----------~----~~lVaaALLHDiGhl 63 (186)
T COG4341 24 YSGEPVTQLEHALQCATLAERDGA-----------D----TALVAAALLHDIGHL 63 (186)
T ss_pred cccCcchhhhhHHHHhHHHHhcCC-----------c----HHHHHHHHHHhHHHH
Confidence 444467999999999988876431 1 135689999999984
No 41
>PRK05007 PII uridylyl-transferase; Provisional
Probab=95.34 E-value=0.033 Score=60.05 Aligned_cols=114 Identities=23% Similarity=0.194 Sum_probs=66.9
Q ss_pred hhHHHHhcCHHH-H-HhhhhhccCceeeeccCCC-----------C--CchhhHHHHHHHHHHHHHHHHH-cCCC---CC
Q psy13612 20 PICVAIIDTPQF-Q-RLRNIKQTSTTYLVYPGAC-----------H--NRFEHSLGVSYLGGCMVDALVH-NTPG---LH 80 (294)
Q Consensus 20 ~~~~~IIdtp~F-Q-RLr~I~QLg~~~~VyP~a~-----------H--tRfeHSLGV~hla~~~~~~l~~-~~~~---~~ 80 (294)
....+|+.+|.- - =|+...++|+...++|.-. | |=.+|++=|...+..+...-.. ..|- +.
T Consensus 413 ~~f~~iL~~~~~~~~~l~~m~~~GlL~~~iPe~~~i~~~~Q~d~~H~ytVd~Htl~~l~~l~~~~~~~~~~~~~~~~~~~ 492 (884)
T PRK05007 413 KLFMEILRHPGAVSRALLPMHRHSVLSAYMPQWSHIVGQMQFDLFHAYTVDEHTIRVLLKLESFADEETRQRHPLCVELY 492 (884)
T ss_pred HHHHHHHcCCCchHHHHHHHHHhCCHHHhCchHhheeeccccCccccCcHhHHHHHHHHHHHHHhcccccccchHHHHHH
Confidence 344567766432 2 2666677777666666432 2 3349999999988776532110 0000 00
Q ss_pred CCHHHHHHHHHHHhhhhcCCCCCCchhhHhhhccCCCCccccccHHHHHHhhhcccchhHHhhcCCC---HHHHHHHHh
Q psy13612 81 ITAEEKLSVELAGLCHDLGHGPFSHTWEKFLRRFDSHWKHEQGSEEVLDYLIEDNKLGPLFESYNLN---LNLIKELIR 156 (294)
Q Consensus 81 i~~~~~~~v~iAALLHDiGHgPFSH~~E~~l~~~~~~~~HE~~s~~i~~~li~~~~l~~~l~~~~~~---~~~I~~~I~ 156 (294)
-.-.+..++++|||+||||-|- +.+|++.++++++.+ +++.+++ .+.|+.+|.
T Consensus 493 ~~~~~~~lL~lAaLlHDIGKg~--------------~~dHs~~Ga~~a~~i---------l~rl~l~~~~~~~v~~LV~ 548 (884)
T PRK05007 493 PRLPKKELLLLAALFHDIAKGR--------------GGDHSILGAQDALEF---------AELHGLNSRETQLVAWLVR 548 (884)
T ss_pred HhcCChhHHHHHHHHHhhcCCC--------------CCChHHHHHHHHHHH---------HHHcCCCHHHHHHHHHHHH
Confidence 0001234789999999999752 236999999998764 4555665 344555554
No 42
>COG1896 Predicted hydrolases of HD superfamily [General function prediction only]
Probab=94.71 E-value=0.067 Score=47.60 Aligned_cols=64 Identities=27% Similarity=0.314 Sum_probs=48.2
Q ss_pred HHHHHhhhhhccCceee-eccCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHhhhhcC
Q psy13612 29 PQFQRLRNIKQTSTTYL-VYPGACHNRFEHSLGVSYLGGCMVDALVHNTPGLHITAEEKLSVELAGLCHDLG 99 (294)
Q Consensus 29 p~FQRLr~I~QLg~~~~-VyP~a~HtRfeHSLGV~hla~~~~~~l~~~~~~~~i~~~~~~~v~iAALLHDiG 99 (294)
+..+||+.|.-.|.... +.++ +|--+||.+|+.+|..+...+.. .+ ..+.. .-+...||.||++
T Consensus 10 ~~~~~Lk~i~R~gw~~~g~~~~--eSvaeHs~~va~la~~la~~~~~-~~-~~vn~---~k~~~~AL~HD~~ 74 (193)
T COG1896 10 ALLSRLKDIPRTGWLLRGIWNP--ESVAEHSFRVAILALLLADILNA-KG-GEVNP---EKVALMALVHDLP 74 (193)
T ss_pred HHHHHHHhhhccchhhcCCCCc--ccHHHHHHHHHHHHHHHHHHHHh-cc-cccCH---HHHHHHHHhcccH
Confidence 78899999999877643 3332 89999999999999999988765 22 12222 2356799999998
No 43
>PRK13298 tRNA CCA-pyrophosphorylase; Provisional
Probab=94.71 E-value=0.081 Score=52.39 Aligned_cols=94 Identities=12% Similarity=0.073 Sum_probs=54.7
Q ss_pred hHHHHhcCHHHHH-hhhhhccCceeeeccCCC------------C---CchhhHHHHHHHHHHHHHHHHHcCCCCCCCHH
Q psy13612 21 ICVAIIDTPQFQR-LRNIKQTSTTYLVYPGAC------------H---NRFEHSLGVSYLGGCMVDALVHNTPGLHITAE 84 (294)
Q Consensus 21 ~~~~IIdtp~FQR-Lr~I~QLg~~~~VyP~a~------------H---tRfeHSLGV~hla~~~~~~l~~~~~~~~i~~~ 84 (294)
...+++.+|.-.+ ++-+.++|.-..+||.-. | .-++|++-|...+..+ .+
T Consensus 180 El~k~L~~~~p~~~~~~L~~~g~L~~~~PEl~~~~g~~q~~~~~~~~~d~~~htl~~l~~~~~~-------~~------- 245 (417)
T PRK13298 180 ETEKALKTDNPHVYFQVLYECNALKFLFPEIDFLYEKPYFLNSFFKKFNLGNYILMGLSKISKL-------TK------- 245 (417)
T ss_pred HHHHHHcCCCHHHHHHHHHHcCCHHHhCcchHHHcCCCCCccccCCchhHHHHHHHHHHHHHhc-------CC-------
Confidence 4456777655544 677778888777787521 1 2244544333322211 11
Q ss_pred HHHHHHHHHhhhhcCCCC-CCchhhHhhhccCCCCccccccHHHHHHhhhc
Q psy13612 85 EKLSVELAGLCHDLGHGP-FSHTWEKFLRRFDSHWKHEQGSEEVLDYLIED 134 (294)
Q Consensus 85 ~~~~v~iAALLHDiGHgP-FSH~~E~~l~~~~~~~~HE~~s~~i~~~li~~ 134 (294)
...++.||||||+|-++ +... + ..+....||..|+.+++.+.+.
T Consensus 246 -~l~lR~AaLlHDiGK~~t~~~~-~----~~~~~~gHe~~G~~~a~~i~~R 290 (417)
T PRK13298 246 -DIDIRFSYLCQFLGSMIPINQI-K----RNYKKIFFDKYAASLIKNLCKR 290 (417)
T ss_pred -CHHHHHHHHHhhhcCCCCCCcc-C----CCCcccChhHhHHHHHHHHHHH
Confidence 12489999999999864 1111 1 1112357999999998876654
No 44
>TIGR02692 tRNA_CCA_actino tRNA adenylyltransferase. The enzyme tRNA adenylyltransferase, also called tRNA-nucleotidyltransferase and CCA-adding enzyme, can add or repair the required CCA triplet at the 3'-end of tRNA molecules. Genes encoding tRNA include the CCA tail in some but not all bacteria, and this enzyme may be required for viability. Members of this family represent a distinct clade within the larger family pfam01743 (tRNA nucleotidyltransferase/poly(A) polymerase family protein). The example from Streptomyces coelicolor was shown to act as a CCA-adding enzyme and not as a poly(A) polymerase.
Probab=94.71 E-value=0.055 Score=54.14 Aligned_cols=80 Identities=20% Similarity=0.260 Sum_probs=46.6
Q ss_pred CchhhHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHhhhhcCCCCCCchhhHhhhccC--CCCccccccHHHHHH
Q psy13612 53 NRFEHSLGVSYLGGCMVDALVHNTPGLHITAEEKLSVELAGLCHDLGHGPFSHTWEKFLRRFD--SHWKHEQGSEEVLDY 130 (294)
Q Consensus 53 tRfeHSLGV~hla~~~~~~l~~~~~~~~i~~~~~~~v~iAALLHDiGHgPFSH~~E~~l~~~~--~~~~HE~~s~~i~~~ 130 (294)
+=++||+-|+.-+..+- .+. ...+++.||||||+|-+. +=..+ ..+ .-..|+..|+++++.
T Consensus 258 ~v~~Htl~vl~~~~~l~----~~~--------~~~~l~lAaLLHDiGK~~-t~~~~----~~g~~~f~gH~~~Ga~~a~~ 320 (466)
T TIGR02692 258 DVYEHSLTVLRQAIDLE----DDG--------PDLVLRWAALLHDIGKPA-TRRFE----PDGRVSFHHHEVVGAKMVRK 320 (466)
T ss_pred cHHHHHHHHHHHHHhcc----ccc--------cCHHHHHHHHHhhccCCC-Ccccc----cCCCcccCcHHHHHHHHHHH
Confidence 66788888776554331 110 112689999999999653 11111 111 123699999998876
Q ss_pred hhhcccchhHHhhcCCC---HHHHHHHHhCC
Q psy13612 131 LIEDNKLGPLFESYNLN---LNLIKELIRGG 158 (294)
Q Consensus 131 li~~~~l~~~l~~~~~~---~~~I~~~I~g~ 158 (294)
+ +++++++ .+.|+.+|...
T Consensus 321 i---------L~rLk~s~~~~~~V~~LV~~H 342 (466)
T TIGR02692 321 R---------MRALKYSKQMVEDVSRLVELH 342 (466)
T ss_pred H---------HHHhCCCHHHHHHHHHHHHHh
Confidence 4 4455555 44555566543
No 45
>PRK10885 cca multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase; Reviewed
Probab=94.63 E-value=0.046 Score=53.94 Aligned_cols=92 Identities=22% Similarity=0.305 Sum_probs=51.2
Q ss_pred HHHHhcCHHHHH-hhhhhccCceeeeccCC-----------CC---CchhhHHHHHHHHHHHHHHHHHcCCCCCCCHHHH
Q psy13612 22 CVAIIDTPQFQR-LRNIKQTSTTYLVYPGA-----------CH---NRFEHSLGVSYLGGCMVDALVHNTPGLHITAEEK 86 (294)
Q Consensus 22 ~~~IIdtp~FQR-Lr~I~QLg~~~~VyP~a-----------~H---tRfeHSLGV~hla~~~~~~l~~~~~~~~i~~~~~ 86 (294)
..+++.++.=.+ ++-+.++|.-..++|.- .| +=++|++-|+..+..+...
T Consensus 181 l~kiL~~~~p~~~l~~L~~~g~L~~l~PEl~~l~~~~Q~~~~H~e~dv~~Htl~~l~~~~~l~~~--------------- 245 (409)
T PRK10885 181 TERALMERNPQVFFQVLRDCGALAVLLPEIDALFGVPQPAKWHPEIDTGIHTLMVLDQAAKLSPS--------------- 245 (409)
T ss_pred HHHHHcCCCHHHHHHHHHHhhHHHHHhhHHHHHhcCCCCcCCCCCCcHHHHHHHHHHHHHhcCCC---------------
Confidence 345555432222 44445556555555542 12 3467877776654443211
Q ss_pred HHHHHHHhhhhcCCCCCCchhhHhhhccCCCCccccccHHHHHHhhhc
Q psy13612 87 LSVELAGLCHDLGHGPFSHTWEKFLRRFDSHWKHEQGSEEVLDYLIED 134 (294)
Q Consensus 87 ~~v~iAALLHDiGHgPFSH~~E~~l~~~~~~~~HE~~s~~i~~~li~~ 134 (294)
..++.||||||+|-+-- -+. .....+.||..|+.+++.+.+.
T Consensus 246 l~lr~AaLlHDlGK~~t---~~~---~~~~~~gH~~~Ga~~a~~i~~R 287 (409)
T PRK10885 246 LDVRFAALCHDLGKGLT---PPE---EWPRHHGHEPRGVKLVEQLCQR 287 (409)
T ss_pred HHHHHHHHhccccCCCC---Ccc---cCcccCchhHhHHHHHHHHHHH
Confidence 14899999999998631 011 0011247999999998876543
No 46
>KOG3689|consensus
Probab=94.15 E-value=0.082 Score=55.27 Aligned_cols=54 Identities=28% Similarity=0.447 Sum_probs=44.7
Q ss_pred CCCCchhhHHHHHHHHHHHHHH--HHHcCCCCCCCHHHHHHHHHHHhhhhcCCCCCCchhhH
Q psy13612 50 ACHNRFEHSLGVSYLGGCMVDA--LVHNTPGLHITAEEKLSVELAGLCHDLGHGPFSHTWEK 109 (294)
Q Consensus 50 a~HtRfeHSLGV~hla~~~~~~--l~~~~~~~~i~~~~~~~v~iAALLHDiGHgPFSH~~E~ 109 (294)
+-|+ +-|..-|+|.+..++.. |.+ .+++-|+.++-+||+||||+|.=++-.|--
T Consensus 429 ~YHN-w~HAf~VaQ~m~~lL~t~~L~~-----~fTdlEiLalliAalcHDlDHrGtNN~f~i 484 (707)
T KOG3689|consen 429 PYHN-WRHAFDVAQAMFALLKTPKLQN-----KFTDLEILALLIAALCHDLDHRGTNNSYLI 484 (707)
T ss_pred cchh-HHHHHHHHHHHHHHHhchhHHh-----hcChHHHHHHHHHHHHccCCCCCCCcHHHH
Confidence 4688 99999999999988865 433 367778889999999999999998887753
No 47
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=93.53 E-value=0.12 Score=52.31 Aligned_cols=47 Identities=15% Similarity=0.201 Sum_probs=38.7
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHhhhhcCCC
Q psy13612 52 HNRFEHSLGVSYLGGCMVDALVHNTPGLHITAEEKLSVELAGLCHDLGHG 101 (294)
Q Consensus 52 HtRfeHSLGV~hla~~~~~~l~~~~~~~~i~~~~~~~v~iAALLHDiGHg 101 (294)
|..-.|.--|+.+|..+++.+... .+++++++.++++||+|||||..
T Consensus 321 ~~d~~ha~~v~~~a~~Lf~~l~~~---~~l~~~~~~LL~~Aa~LhdiG~~ 367 (496)
T PRK11031 321 QIDTEQAQRVAKLADNFLQQVENE---WHLEPRSRELLISACQLHEIGLS 367 (496)
T ss_pred CcCHHHHHHHHHHHHHHHHhhhhh---cCCChHHHHHHHHHHHHHhcCCc
Confidence 444689999999999999988653 23567888899999999999964
No 48
>PRK10854 exopolyphosphatase; Provisional
Probab=93.40 E-value=0.12 Score=52.28 Aligned_cols=48 Identities=15% Similarity=0.130 Sum_probs=37.5
Q ss_pred CchhhHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHhhhhcCCC
Q psy13612 53 NRFEHSLGVSYLGGCMVDALVHNTPGLHITAEEKLSVELAGLCHDLGHG 101 (294)
Q Consensus 53 tRfeHSLGV~hla~~~~~~l~~~~~~~~i~~~~~~~v~iAALLHDiGHg 101 (294)
..-.|.--|+.+|..+++.+......+ .++++..++++||+|||||..
T Consensus 328 ~d~~ha~~V~~~a~~LFd~l~~~h~~~-~~~~~~~LL~~Aa~LhdiG~~ 375 (513)
T PRK10854 328 IDREQARRVLETTMQLYEQWREQNPKL-AHPQLEALLKWAAMLHEVGLN 375 (513)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhhhccc-CCHHHHHHHHHHHHHHhcCCc
Confidence 345788999999999999987632111 257788899999999999963
No 49
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.25 E-value=0.16 Score=53.76 Aligned_cols=81 Identities=21% Similarity=0.284 Sum_probs=52.2
Q ss_pred HHHHHhhhhhccCceeeeccCCCCCchhhHHHHHHHHHHHHHHH-HHcCC---C--CCCCHHHHHHHHHHHhhhhcCCCC
Q psy13612 29 PQFQRLRNIKQTSTTYLVYPGACHNRFEHSLGVSYLGGCMVDAL-VHNTP---G--LHITAEEKLSVELAGLCHDLGHGP 102 (294)
Q Consensus 29 p~FQRLr~I~QLg~~~~VyP~a~HtRfeHSLGV~hla~~~~~~l-~~~~~---~--~~i~~~~~~~v~iAALLHDiGHgP 102 (294)
|+|.+....-|-.+ +-+| |==||+|-|+-....+...- ....| . ..++ +..++.+|||+||||-|
T Consensus 428 Pew~~Ivg~MQfdl-fH~Y-----TVDeH~lr~v~~l~~~a~~~~~~~hPl~~~l~~~~~--~~elLylAaLfHDIaKG- 498 (867)
T COG2844 428 PEWGKIVGLMQFDL-FHIY-----TVDEHTLRVVLKLARFARGEARHEHPLASQLMPRLE--KRELLYLAALFHDIAKG- 498 (867)
T ss_pred ccHHhhhcccccCc-ceec-----chhHHHHHHHHHHHHhhcccccccCccHHhhccCCC--ChhHHHHHHHHHHhhcC-
Confidence 56666666556444 2334 34588899888777776432 22233 1 1233 34478999999999965
Q ss_pred CCchhhHhhhccCCCCccccccHHHHHHh
Q psy13612 103 FSHTWEKFLRRFDSHWKHEQGSEEVLDYL 131 (294)
Q Consensus 103 FSH~~E~~l~~~~~~~~HE~~s~~i~~~l 131 (294)
.+-+|+..++++++.+
T Consensus 499 -------------RggDHs~lGA~~a~~f 514 (867)
T COG2844 499 -------------RGGDHSILGAEDARRF 514 (867)
T ss_pred -------------CCCchHHhhHHHHHHH
Confidence 3568999999887764
No 50
>COG1480 Predicted membrane-associated HD superfamily hydrolase [General function prediction only]
Probab=89.78 E-value=1 Score=47.01 Aligned_cols=90 Identities=20% Similarity=0.268 Sum_probs=56.1
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHhhhhcCCCCCCchhhHhhhc-cCCCCccccccHHHHH
Q psy13612 51 CHNRFEHSLGVSYLGGCMVDALVHNTPGLHITAEEKLSVELAGLCHDLGHGPFSHTWEKFLRR-FDSHWKHEQGSEEVLD 129 (294)
Q Consensus 51 ~HtRfeHSLGV~hla~~~~~~l~~~~~~~~i~~~~~~~v~iAALLHDiGHgPFSH~~E~~l~~-~~~~~~HE~~s~~i~~ 129 (294)
--| |.||+=|+.||.-.++.+..| ..++|+||.=||||-.-=- ..|.++ .+.+-+|+..+-.+-.
T Consensus 488 PGT-y~HSvmVAnLAEaAa~~IGan----------~lLaRVgayYHDIGK~~rP---~~FiENQ~~g~N~Hd~lsP~lSa 553 (700)
T COG1480 488 PGT-YQHSVMVANLAEAAAEEIGAN----------SLLARVGAYYHDIGKMKRP---LFFIENQMGGKNPHDDLSPQLSA 553 (700)
T ss_pred CCC-ccchhhHHHHHHHHHHHhCCc----------hHHHHHHHHHhhcccccCC---ccccccccCCCCCcccCCHHHHH
Confidence 346 999999999999999988764 3578999999999954211 124433 2334457766655544
Q ss_pred Hhhhc-ccc-hhHHhhcCCCHHHHHHHH
Q psy13612 130 YLIED-NKL-GPLFESYNLNLNLIKELI 155 (294)
Q Consensus 130 ~li~~-~~l-~~~l~~~~~~~~~I~~~I 155 (294)
.+|.+ ..- .+..++|+++ +.|.++|
T Consensus 554 ~II~sHv~eGv~mar~y~lP-q~iidii 580 (700)
T COG1480 554 LIIISHVKEGVEMAREYKLP-QEIIDII 580 (700)
T ss_pred HHHHHhhhhHHHHHHHcCCC-HHHHHHH
Confidence 44432 111 2346678875 4444544
No 51
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=89.52 E-value=0.45 Score=46.08 Aligned_cols=55 Identities=18% Similarity=0.138 Sum_probs=42.4
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHhhhhcCCCCCCchhhHhhhccC
Q psy13612 51 CHNRFEHSLGVSYLGGCMVDALVHNTPGLHITAEEKLSVELAGLCHDLGHGPFSHTWEKFLRRFD 115 (294)
Q Consensus 51 ~HtRfeHSLGV~hla~~~~~~l~~~~~~~~i~~~~~~~v~iAALLHDiGHgPFSH~~E~~l~~~~ 115 (294)
.|..-+|+.-|.+.++.+++.+ ++++.+...+..||.|||||--. .=+..+.++|
T Consensus 183 ~~etg~H~~Rv~~~~~~lAe~l-------gLse~~v~~i~~AapLHDIGKva---iPD~ILlKpg 237 (360)
T COG3437 183 DYETGDHLERVAQYSELLAELL-------GLSEEEVDLIKKAAPLHDIGKVA---IPDSILLKPG 237 (360)
T ss_pred ccchhhHHHHHHHHHHHHHHHh-------CCCHHHHHHHHhccchhhccccc---CChHHhcCCC
Confidence 4555678899999999999874 58899999999999999999753 1133555565
No 52
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=87.66 E-value=0.66 Score=49.84 Aligned_cols=54 Identities=22% Similarity=0.207 Sum_probs=40.6
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHhhhhcCCCCCCchhhHhhh
Q psy13612 49 GACHNRFEHSLGVSYLGGCMVDALVHNTPGLHITAEEKLSVELAGLCHDLGHGPFSHTWEKFLR 112 (294)
Q Consensus 49 ~a~HtRfeHSLGV~hla~~~~~~l~~~~~~~~i~~~~~~~v~iAALLHDiGHgPFSH~~E~~l~ 112 (294)
+..+|=-+|..+|+.+|..++..+. . +.....+++|||+||+|- +|-.|..++.
T Consensus 671 ~~~q~L~eHl~~va~lA~~fa~~~g-------l-~~~~~~~~laGllHDlGK--~~~~FQ~yL~ 724 (844)
T TIGR02621 671 GDEVALSDHLDNVFEVAKNFVAKLG-------L-GDLDKAVRQAARLHDLGK--QRPRFQTMLG 724 (844)
T ss_pred CCcEEHHHHHHHHHHHHHHHHHHcC-------c-hHHHHHHHHHHHhccccc--CCHHHHHHhc
Confidence 3346667999999999999997752 2 222234789999999996 7888888773
No 53
>PF08668 HDOD: HDOD domain; InterPro: IPR013976 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity. These members appear to be involved in the nucleic acid metabolism and signal transduction or possibly other functions and are restricted to bacteria, primarily the proteobacteria. The fact that all the highly conserved residues in the HD superfamily are histidines or aspartates suggests that coordination of divalent cations is essential for the activity of these proteins [].; PDB: 1VQR_D 3LJX_A 3P3Q_B 3MEM_A 3M1T_A 3HC1_A 3I7A_A.
Probab=86.92 E-value=0.66 Score=40.21 Aligned_cols=47 Identities=23% Similarity=0.298 Sum_probs=35.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHhhhhcCCCCCCchhhH
Q psy13612 54 RFEHSLGVSYLGGCMVDALVHNTPGLHITAEEKLSVELAGLCHDLGHGPFSHTWEK 109 (294)
Q Consensus 54 RfeHSLGV~hla~~~~~~l~~~~~~~~i~~~~~~~v~iAALLHDiGHgPFSH~~E~ 109 (294)
-..||+.++.+|..+++... ... .....+|||+||+|-....+.+.+
T Consensus 95 ~~~~s~~~a~~a~~la~~~~-------~~~--~~~a~~~gLL~~iG~l~l~~~~~~ 141 (196)
T PF08668_consen 95 FWRHSLAAAAIARRLARELG-------FDD--PDEAYLAGLLHDIGKLLLLSLFPE 141 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHCT-------CCH--HHHHHHHHHHTTHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHcC-------CCC--HHHHHHHHHHHHHhHHHHHHHhHH
Confidence 37899999999999997642 222 235789999999998876655444
No 54
>PF13023 HD_3: HD domain; PDB: 1XX7_D 2GZ4_B 4DMB_B.
Probab=81.80 E-value=2.6 Score=36.28 Aligned_cols=59 Identities=25% Similarity=0.233 Sum_probs=34.0
Q ss_pred HHhhhhhccCceeeeccCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHhhhhcC
Q psy13612 32 QRLRNIKQTSTTYLVYPGACHNRFEHSLGVSYLGGCMVDALVHNTPGLHITAEEKLSVELAGLCHDLG 99 (294)
Q Consensus 32 QRLr~I~QLg~~~~VyP~a~HtRfeHSLGV~hla~~~~~~l~~~~~~~~i~~~~~~~v~iAALLHDiG 99 (294)
.|||+|+-.|....=-+. .=|=-|||..|+-+|..+....... + +..-+...||+||++
T Consensus 2 ~~Lk~i~R~gw~~~g~~~-~EsVAeHS~~vA~~a~~la~~~~~~-----~---d~~k~~~~aL~HDl~ 60 (165)
T PF13023_consen 2 DRLKFIKRTGWVLRGRPR-PESVAEHSWRVALIALLLAEEAGPD-----L---DIEKVVKMALFHDLP 60 (165)
T ss_dssp HHCCCSB-HHHHHCTSSS-G-BHHHHHHHHHHHHHHHHHHHH-H-----C----HHHHHHHHHHTTTT
T ss_pred cccCcccCCCcccCCCCC-CccHHHHHHHHHHHHHHHhHHhccc-----C---CHHHHHHHHhhccch
Confidence 467776665543211011 1233689999999998888765311 1 222244566999998
No 55
>PRK03826 5'-nucleotidase; Provisional
Probab=81.27 E-value=3.1 Score=37.08 Aligned_cols=63 Identities=21% Similarity=0.204 Sum_probs=40.5
Q ss_pred HHHHhhhhhccCceeeeccCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHhhhhcC
Q psy13612 30 QFQRLRNIKQTSTTYLVYPGACHNRFEHSLGVSYLGGCMVDALVHNTPGLHITAEEKLSVELAGLCHDLG 99 (294)
Q Consensus 30 ~FQRLr~I~QLg~~~~VyP~a~HtRfeHSLGV~hla~~~~~~l~~~~~~~~i~~~~~~~v~iAALLHDiG 99 (294)
...|||.|+--|.+.-+ -..|=-+||..|+-+|..+...-.+..+ -+++ ..-+...||+||++
T Consensus 8 ~~~rLK~i~Rw~~~~~~---~~EsVAeHs~~vAliA~~La~i~~~~~~-~~vd---~~rv~~~aL~HDl~ 70 (195)
T PRK03826 8 HLSRLKLINRWPLMRNV---RTENVSEHSLQVAMVAHALAVIKNRKFG-GNLN---AERIALLAMYHDAS 70 (195)
T ss_pred HHHhhccccccCCCCCC---CCCccHHHHHHHHHHHHHHHHHHHHHcC-CCCC---HHHHHHHHHhcchH
Confidence 45788888887764322 3456679999999999877643111111 1222 22356689999998
No 56
>PF07514 TraI_2: Putative helicase; InterPro: IPR011119 The members of this family are restricted to the proteobacteria. Some members have been annotated as helicase, conjugative relaxase or nickase. The majority contain an HD domain, which is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity. These enzymes appear to be involved in the nucleic acid metabolism, signal transduction and possibly other functions in bacteria.
Probab=79.54 E-value=2.4 Score=40.78 Aligned_cols=45 Identities=27% Similarity=0.313 Sum_probs=29.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHcCCCCCCCHH-------HHHHHHHHHhhhhcCC
Q psy13612 54 RFEHSLGVSYLGGCMVDALVHNTPGLHITAE-------EKLSVELAGLCHDLGH 100 (294)
Q Consensus 54 RfeHSLGV~hla~~~~~~l~~~~~~~~i~~~-------~~~~v~iAALLHDiGH 100 (294)
=|.|+|-|+..|-++.+... .|.-..+|+ ....+-+||||||||-
T Consensus 67 ll~h~LEva~~Alrl~~~~~--lp~~a~pEe~~~q~~~W~~avf~AALlhdlgk 118 (327)
T PF07514_consen 67 LLDHTLEVAAYALRLRQGYM--LPPGATPEEQAAQEPAWRYAVFYAALLHDLGK 118 (327)
T ss_pred HHHHHHHHHHHHHHHhcCee--cCCCCChhhHHHHHhhhHHHHHHHHHHhccCc
Confidence 37899999999988875321 121111111 1236788999999996
No 57
>COG3294 HD supefamily hydrolase [General function prediction only]
Probab=79.35 E-value=4.2 Score=37.33 Aligned_cols=94 Identities=18% Similarity=0.202 Sum_probs=54.1
Q ss_pred hHHHHhcCHHHHH---hhhhhccCceeeeccCCCCCchhhHHHHHHHHHHHHHHHHHcC--CC----CCCCHHH-HHHHH
Q psy13612 21 ICVAIIDTPQFQR---LRNIKQTSTTYLVYPGACHNRFEHSLGVSYLGGCMVDALVHNT--PG----LHITAEE-KLSVE 90 (294)
Q Consensus 21 ~~~~IIdtp~FQR---Lr~I~QLg~~~~VyP~a~HtRfeHSLGV~hla~~~~~~l~~~~--~~----~~i~~~~-~~~v~ 90 (294)
....+++.++.|- +.++--.|-.-|-=.|+.|.|. |+.-|-.+.+.|.++- |. -.-+.+| ...+.
T Consensus 27 vy~~l~~D~ev~A~l~maNv~av~RlgYNDHG~vHa~I-----va~~Al~i~~lL~~~Gv~ps~v~dg~gd~eD~~vivl 101 (269)
T COG3294 27 VYELLLNDEEVQAYLKMANVMAVGRLGYNDHGPVHARI-----VANSALAIYKLLLEKGVKPSGVTDGVGDEEDSPVIVL 101 (269)
T ss_pred HHHHHhcCHHHHHHHHHhhhhhhhhhcccCCCceeeee-----ccchHHHHHHHHHhcCCCcccccccCCchhhhhHHHH
Confidence 3446667776654 3333222222233478888865 5556666666666542 21 1123344 34678
Q ss_pred HHHhhhhcCCCCCCchhhHhhhccCCCCccccccHHHHHHhh
Q psy13612 91 LAGLCHDLGHGPFSHTWEKFLRRFDSHWKHEQGSEEVLDYLI 132 (294)
Q Consensus 91 iAALLHDiGHgPFSH~~E~~l~~~~~~~~HE~~s~~i~~~li 132 (294)
+||-||||||.- . .-.||..|+-+...++
T Consensus 102 Lga~LHDIGnsV---------H----Rd~H~~~sa~La~~Il 130 (269)
T COG3294 102 LGAYLHDIGNSV---------H----RDDHELYSAVLALDIL 130 (269)
T ss_pred HHHHHHhccchh---------c----cccHHHHhHHHhHHHH
Confidence 899999999853 1 2358888877665554
No 58
>COG3481 Predicted HD-superfamily hydrolase [General function prediction only]
Probab=75.68 E-value=3.3 Score=39.12 Aligned_cols=50 Identities=28% Similarity=0.478 Sum_probs=34.0
Q ss_pred eeeeccCCC--CCch-----hhHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHhhhhcCCC
Q psy13612 43 TYLVYPGAC--HNRF-----EHSLGVSYLGGCMVDALVHNTPGLHITAEEKLSVELAGLCHDLGHG 101 (294)
Q Consensus 43 ~~~VyP~a~--HtRf-----eHSLGV~hla~~~~~~l~~~~~~~~i~~~~~~~v~iAALLHDiGHg 101 (294)
.++-||+++ |-+| +|++-|+.++..+++. +|.+ ++..++++|+|||+|++
T Consensus 124 ~f~~~paa~~~Hh~~~~gLa~ht~~~~~l~~~~~~~----y~~~-----n~dli~Ag~ilHdigK~ 180 (287)
T COG3481 124 VFYKYPAATQNHHAFEGGLAEHTLTVLELYKRISEI----YPTV-----NRELIYAGAILHDIGKV 180 (287)
T ss_pred HHhccchhhhhhhhhhcchHHHHHHHHHHHHHHHhh----cccc-----cHHHHHHHHHHhccccc
Confidence 456788885 5444 3677777777777653 2222 23478999999999985
No 59
>PF13286 HD_assoc: Phosphohydrolase-associated domain; PDB: 2DQB_D.
Probab=71.67 E-value=6.4 Score=29.96 Aligned_cols=33 Identities=18% Similarity=0.028 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHhH
Q psy13612 236 MFRVRADLHLRAYQHCATKNTELVRRPSIDEVN 268 (294)
Q Consensus 236 ~~~~R~~m~~~VY~H~~~r~~e~ml~~~l~~a~ 268 (294)
+-..|..+|++||.|+.+...+....+++...-
T Consensus 11 ~~~Lk~f~~~~Iy~~~~v~~~~~~~~~ii~~Lf 43 (92)
T PF13286_consen 11 IKELKKFNYENIYQSPRVVEEEEKGRRIIRELF 43 (92)
T ss_dssp HHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHH
Confidence 346789999999999999888887777776643
No 60
>COG1639 Predicted signal transduction protein [Signal transduction mechanisms]
Probab=67.10 E-value=11 Score=35.84 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=21.1
Q ss_pred HHHHHHhhhhcCCCCCCchhhHhh
Q psy13612 88 SVELAGLCHDLGHGPFSHTWEKFL 111 (294)
Q Consensus 88 ~v~iAALLHDiGHgPFSH~~E~~l 111 (294)
...+|||||++|=.+|.+.|..+.
T Consensus 142 ~~y~~gLLh~lG~l~ll~~~~~~~ 165 (289)
T COG1639 142 EAYTAGLLHNLGILVLLTDFPDHC 165 (289)
T ss_pred HHHHHHHHHHccHHHHHHHhHHHH
Confidence 467899999999999999998854
No 61
>PF13328 HD_4: HD domain; PDB: 3NR1_B.
Probab=63.71 E-value=5.4 Score=33.49 Aligned_cols=32 Identities=22% Similarity=0.238 Sum_probs=21.0
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHhhhhc
Q psy13612 52 HNRFEHSLGVSYLGGCMVDALVHNTPGLHITAEEKLSVELAGLCHDL 98 (294)
Q Consensus 52 HtRfeHSLGV~hla~~~~~~l~~~~~~~~i~~~~~~~v~iAALLHDi 98 (294)
-.-+.|.++|+.+...+- .++ -+.+||||||+
T Consensus 18 ~py~~H~~~va~~l~~~~-----------~d~----~~i~aalLHD~ 49 (153)
T PF13328_consen 18 EPYISHPLEVAEILAELG-----------LDE----ETIAAALLHDV 49 (153)
T ss_dssp -BTTHHHHHHHHHHHTS--------------H----HHHHHHHHTTH
T ss_pred CcHHHHHHHHHHHHHHcC-----------CCH----HHHhhheeecH
Confidence 344889999998764442 111 26789999985
No 62
>KOG1573|consensus
Probab=63.51 E-value=6 Score=34.54 Aligned_cols=13 Identities=46% Similarity=0.738 Sum_probs=11.1
Q ss_pred HHHHHHhhhhcCC
Q psy13612 88 SVELAGLCHDLGH 100 (294)
Q Consensus 88 ~v~iAALLHDiGH 100 (294)
.+-++||+||+|-
T Consensus 117 WlHLtaLiHDLGK 129 (204)
T KOG1573|consen 117 WLHLTALIHDLGK 129 (204)
T ss_pred HHHHHHHHHHHHH
Confidence 4678999999995
No 63
>PF04263 TPK_catalytic: Thiamin pyrophosphokinase, catalytic domain; InterPro: IPR007371 Thiamin pyrophosphokinase (TPK, 2.7.6.2 from EC) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamin) to form the coenzyme thiamin pyrophosphate (TPP). Thus, TPK is important for the formation of a coenzyme required for central metabolic functions. The structure of thiamin pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis [].; GO: 0004788 thiamine diphosphokinase activity, 0005524 ATP binding, 0009229 thiamine diphosphate biosynthetic process; PDB: 2F17_B 1IG3_B 3S4Y_B 2OMK_B 1IG0_A 3MEL_B 3CQ9_A 3LM8_B 3K94_B 3L8M_B ....
Probab=62.64 E-value=9.4 Score=31.39 Aligned_cols=41 Identities=20% Similarity=0.226 Sum_probs=31.9
Q ss_pred HHHHH-hhhhhccCceeeeccCCCCCchhhHHHHHHHHHHHH
Q psy13612 29 PQFQR-LRNIKQTSTTYLVYPGACHNRFEHSLGVSYLGGCMV 69 (294)
Q Consensus 29 p~FQR-Lr~I~QLg~~~~VyP~a~HtRfeHSLGV~hla~~~~ 69 (294)
.-|+- |+.+.+.|....+.=||+-.||.|.||..+++.++.
T Consensus 71 TD~e~Al~~~~~~~~~~i~v~Ga~GgR~DH~lanl~~l~~~~ 112 (123)
T PF04263_consen 71 TDLEKALEYAIEQGPDEIIVLGALGGRFDHTLANLNLLYKYK 112 (123)
T ss_dssp -HHHHHHHHHHHTTTSEEEEES-SSSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCEEEEEecCCCcHHHHHHHHHHHHHHH
Confidence 34444 566688888888778999999999999999988876
No 64
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=61.52 E-value=6.8 Score=43.28 Aligned_cols=45 Identities=31% Similarity=0.460 Sum_probs=32.4
Q ss_pred HHHHHHHhhhhcCCCCCCchhhHhhhcc--C----CCCccccccHHHHHHhhh
Q psy13612 87 LSVELAGLCHDLGHGPFSHTWEKFLRRF--D----SHWKHEQGSEEVLDYLIE 133 (294)
Q Consensus 87 ~~v~iAALLHDiGHgPFSH~~E~~l~~~--~----~~~~HE~~s~~i~~~li~ 133 (294)
.+..+|||+||+|-. |=.|..=+... + .++.||-+|.++|+.++.
T Consensus 114 lLa~~AgL~HD~GKA--~~~FQ~kL~~~~~~~~~~d~~RHEWvSlrLfqafv~ 164 (1110)
T TIGR02562 114 LLAGLAGLLHDIGKA--SVHFQNKLSPEMNGPKIADDYRHEWVSLRLFQAFVE 164 (1110)
T ss_pred HHHHHHHHhhccccc--hHHHHHhhcCccCCCccCCCccHHHHHHHHHHHHhC
Confidence 456899999999964 34444433211 2 367899999999999885
No 65
>COG2316 Predicted hydrolase (HD superfamily) [General function prediction only]
Probab=57.18 E-value=25 Score=30.97 Aligned_cols=34 Identities=24% Similarity=0.334 Sum_probs=23.9
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHhhhhcC
Q psy13612 56 EHSLGVSYLGGCMVDALVHNTPGLHITAEEKLSVELAGLCHDLG 99 (294)
Q Consensus 56 eHSLGV~hla~~~~~~l~~~~~~~~i~~~~~~~v~iAALLHDiG 99 (294)
-|+|.|.-+++-+++.+.+ ++ + ---+++||||+-
T Consensus 50 kHcla~eavMr~lARe~gE-------DE-E--kw~~~GlLHD~D 83 (212)
T COG2316 50 KHCLAVEAVMRWLAREWGE-------DE-E--KWAVTGLLHDFD 83 (212)
T ss_pred HHHHHHHHHHHHHHHHhCc-------cH-H--HHHHHhhhhhcc
Confidence 4888888888888766432 12 2 245799999986
No 66
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=53.44 E-value=23 Score=36.11 Aligned_cols=44 Identities=27% Similarity=0.360 Sum_probs=30.4
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHhhhhcCCC
Q psy13612 56 EHSLGVSYLGGCMVDALVHNTPGLHITAEEKLSVELAGLCHDLGHG 101 (294)
Q Consensus 56 eHSLGV~hla~~~~~~l~~~~~~~~i~~~~~~~v~iAALLHDiGHg 101 (294)
+|+--|...|..+++.+.... ....++++.. +..||+|||||..
T Consensus 329 ~~~~~v~~~a~~l~~~~~~~~-~~~~~~~~~~-l~~Aa~Lh~iG~~ 372 (492)
T COG0248 329 AQAKRVAKLALELFDQLLALL-KIDEEAEERL-LEAAAMLHEIGLN 372 (492)
T ss_pred HhHhhHHHHHHHHHHHhhhcc-ccCCChHHHH-HHHHHHHHHhccc
Confidence 556667888888887765422 2334555555 8999999999964
No 67
>PF12917 HD_2: HD containing hydrolase-like enzyme ; PDB: 3MZO_B.
Probab=53.18 E-value=30 Score=31.37 Aligned_cols=45 Identities=24% Similarity=0.238 Sum_probs=30.2
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHhhhhcC
Q psy13612 50 ACHNRFEHSLGVSYLGGCMVDALVHNTPGLHITAEEKLSVELAGLCHDLG 99 (294)
Q Consensus 50 a~HtRfeHSLGV~hla~~~~~~l~~~~~~~~i~~~~~~~v~iAALLHDiG 99 (294)
-.||==+||.-|+.+|..+.. +++.. +.. -+...+...||+||+.
T Consensus 26 ~~~nVA~HSf~Va~iA~~Lg~-iee~~-G~~---vd~~~lyekAL~HD~~ 70 (215)
T PF12917_consen 26 QEHNVAEHSFKVAMIAQFLGD-IEEQF-GNE---VDWKELYEKALNHDYP 70 (215)
T ss_dssp S--BHHHHHHHHHHHHHHHHH-HHHHT-T-------HHHHHHHHHHTTGG
T ss_pred chhhHHHHHHHHHHHHHHHHH-HHHHh-CCc---cCHHHHHHHHhccccH
Confidence 368999999999999998875 33332 222 2444677899999988
No 68
>TIGR01378 thi_PPkinase thiamine pyrophosphokinase. This model has been revised. Originally, it described strictly eukaryotic thiamine pyrophosphokinase. However, it is now expanded to include also homologous enzymes, apparently functionally equivalent, from species that rely on thiamine pyrophosphokinase rather than thiamine-monophosphate kinase (TIGR01379) to produce the active TPP cofactor. This includes the thiamine pyrophosphokinase from Bacillus subtilis, previously designated YloS.
Probab=44.93 E-value=28 Score=30.88 Aligned_cols=36 Identities=19% Similarity=0.162 Sum_probs=28.7
Q ss_pred hhhhhccCceeeeccCCCCCchhhHHHHHHHHHHHH
Q psy13612 34 LRNIKQTSTTYLVYPGACHNRFEHSLGVSYLGGCMV 69 (294)
Q Consensus 34 Lr~I~QLg~~~~VyP~a~HtRfeHSLGV~hla~~~~ 69 (294)
|+.+.+.|....+.=||+-.|+.|.|+-.++..+..
T Consensus 79 l~~~~~~~~~~i~i~Ga~GgR~DH~lani~~L~~~~ 114 (203)
T TIGR01378 79 LKYALERGADEITILGATGGRLDHTLANLNLLLEYA 114 (203)
T ss_pred HHHHHHCCCCEEEEEcCCCCcHHHHHHHHHHHHHHH
Confidence 455566677666667999999999999999887764
No 69
>TIGR02578 cas_TM1811_Csm1 CRISPR-associated protein, Csm1 family. The family is designated Csm2, for CRISPR/Cas Subtype Mtube Protein 2. A typical example is TM1811 from Thermotoga maritima. CRISPR are Clustered Regularly Interspaced Short Palindromic Repeats. This protein family belongs to a conserved gene cluster regularly found near CRISPR repeats.
Probab=44.47 E-value=7.3 Score=40.89 Aligned_cols=11 Identities=45% Similarity=0.845 Sum_probs=9.7
Q ss_pred HHHHhhhhcCC
Q psy13612 90 ELAGLCHDLGH 100 (294)
Q Consensus 90 ~iAALLHDiGH 100 (294)
.+||||||||-
T Consensus 2 ~~~aLLHDIGK 12 (648)
T TIGR02578 2 AVAALLHDIGK 12 (648)
T ss_pred chhhhhhccch
Confidence 47999999995
No 70
>cd07995 TPK Thiamine pyrophosphokinase. Thiamine pyrophosphokinase (TPK, EC:2.7.6.2, also spelled thiamin pyrophosphokinase) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamine) to form the coenzyme thiamine pyrophosphate (TPP). TPP is required for central metabolic functions, and thiamine deficiency is associated with potentially fatal human diseases. The structure of thiamine pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis.
Probab=42.52 E-value=27 Score=30.88 Aligned_cols=40 Identities=23% Similarity=0.265 Sum_probs=33.0
Q ss_pred HHHH-hhhhhccCceeeeccCCCCCchhhHHHHHHHHHHHH
Q psy13612 30 QFQR-LRNIKQTSTTYLVYPGACHNRFEHSLGVSYLGGCMV 69 (294)
Q Consensus 30 ~FQR-Lr~I~QLg~~~~VyP~a~HtRfeHSLGV~hla~~~~ 69 (294)
-|+- |+.+.+.|....+.=||+-.|+.|+||..++..++.
T Consensus 78 D~e~Al~~~~~~~~~~i~i~Ga~GgR~DH~lani~~l~~~~ 118 (208)
T cd07995 78 DFEKALKLALERGADEIVILGATGGRLDHTLANLNLLLKYA 118 (208)
T ss_pred HHHHHHHHHHHcCCCEEEEEccCCCcHHHHHHHHHHHHHHH
Confidence 3444 677778888777788999999999999999988875
No 71
>PF05153 DUF706: Family of unknown function (DUF706) ; InterPro: IPR007828 Inositol oxygenase (1.13.99.1 from EC) is involved in the biosynthesis of UDP-glucuronic acid (UDP-GlcA), providing nucleotide sugars for cell-wall polymers. It may be also involved in plant ascorbate biosynthesis [, ].; GO: 0005506 iron ion binding, 0050113 inositol oxygenase activity, 0019310 inositol catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 2HUO_A 3BXD_A 2IBN_A.
Probab=39.42 E-value=31 Score=32.03 Aligned_cols=14 Identities=50% Similarity=0.778 Sum_probs=11.9
Q ss_pred HHHHHHhhhhcCCC
Q psy13612 88 SVELAGLCHDLGHG 101 (294)
Q Consensus 88 ~v~iAALLHDiGHg 101 (294)
-++++||+||+|-.
T Consensus 83 W~~LtGLiHDLGKv 96 (253)
T PF05153_consen 83 WMQLTGLIHDLGKV 96 (253)
T ss_dssp HHHHHHHHTTGGGH
T ss_pred hhhheehhccchhh
Confidence 58899999999953
No 72
>COG1353 Predicted CRISPR-associated polymerase [Defense mechanisms]
Probab=32.50 E-value=25 Score=37.95 Aligned_cols=13 Identities=38% Similarity=0.736 Sum_probs=11.5
Q ss_pred HHHHHHHhhhhcC
Q psy13612 87 LSVELAGLCHDLG 99 (294)
Q Consensus 87 ~~v~iAALLHDiG 99 (294)
..+.+||||||+|
T Consensus 6 ~~~~i~aLLHD~g 18 (799)
T COG1353 6 EELKIAALLHDIG 18 (799)
T ss_pred HHHHHHHHhcCCc
Confidence 4578999999999
No 73
>PF13875 DUF4202: Domain of unknown function (DUF4202)
Probab=27.57 E-value=3.9e+02 Score=23.74 Aligned_cols=96 Identities=10% Similarity=0.156 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHhhhhcCCCCCCchhhHhhhccCCCCccccccHHHHHHhhh---cccchh
Q psy13612 63 YLGGCMVDALVHNTPGLHITAEEKLSVELAGLCHDLGHGPFSHTWEKFLRRFDSHWKHEQGSEEVLDYLIE---DNKLGP 139 (294)
Q Consensus 63 hla~~~~~~l~~~~~~~~i~~~~~~~v~iAALLHDiGHgPFSH~~E~~l~~~~~~~~HE~~s~~i~~~li~---~~~l~~ 139 (294)
+-|.+|-+-|.+-.|+- -..+++||.+++|+.+- +.++. ++--..+..-.+.-+. .....+
T Consensus 31 ~Ya~rMt~~l~~~~P~A------se~LqlAaR~QHi~RW~--------~PR~~--yP~~r~GYl~WR~~l~~~hA~~~~~ 94 (185)
T PF13875_consen 31 LYAQRMTEWLARLAPDA------SEALQLAARAQHIERWE--------IPRSS--YPEGRAGYLQWRRALKKRHAAIAAE 94 (185)
T ss_pred HHHHHHHHHHHHhCCCC------CHHHHHHHHHHHHHHhc--------Cchhc--CCCCchhHHHHHHHHHHHHHHHHHH
Confidence 34556665555544432 13689999999998762 11110 0000111111111111 112345
Q ss_pred HHhhcCCC---HHHHHHHHhCCCCCCCCchhhHHHhhh
Q psy13612 140 LFESYNLN---LNLIKELIRGGGESLPADKRFLYQIIA 174 (294)
Q Consensus 140 ~l~~~~~~---~~~I~~~I~g~~~~~~~~~~~l~~Ivs 174 (294)
++.+.|++ ++.|..+|....-.++++...|.+.++
T Consensus 95 im~~~Gy~~~~i~rV~~lv~K~~lk~d~e~Q~LEDvac 132 (185)
T PF13875_consen 95 IMREAGYDEEEIDRVAALVRKEGLKRDPETQALEDVAC 132 (185)
T ss_pred HHHHCCCCHHHHHHHHHHHHhccCCCCchHHHHHhhHH
Confidence 67778888 566777777655444455545544443
No 74
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=23.72 E-value=46 Score=35.23 Aligned_cols=26 Identities=8% Similarity=0.005 Sum_probs=20.4
Q ss_pred ceEEeccccHHHHHHHHHHHHHHHHH
Q psy13612 221 PTIAFRNKEASNIFDMFRVRADLHLR 246 (294)
Q Consensus 221 ~~l~~~~k~~~~ie~~~~~R~~m~~~ 246 (294)
.++.++....+.+-++-.+-+..|+.
T Consensus 293 ~EvQIRT~~mh~~Ae~Gvaahw~yk~ 318 (683)
T TIGR00691 293 VEIQIRTEDMDRVAEYGIAAHWIYKE 318 (683)
T ss_pred EEEEEEehHHHHHHHHHHHHHHhhcC
Confidence 46778888888888888887777764
No 75
>COG2254 Predicted HD superfamily hydrolase, possibly a nuclease [DNA replication, recombination, and repair]
Probab=23.67 E-value=56 Score=30.01 Aligned_cols=78 Identities=17% Similarity=0.151 Sum_probs=42.6
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHc--CCCCCCC-HHHHHHHHHHHhhhhcCCCCCCchhhHhhhccCC--CCcccccc
Q psy13612 50 ACHNRFEHSLGVSYLGGCMVDALVHN--TPGLHIT-AEEKLSVELAGLCHDLGHGPFSHTWEKFLRRFDS--HWKHEQGS 124 (294)
Q Consensus 50 a~HtRfeHSLGV~hla~~~~~~l~~~--~~~~~i~-~~~~~~v~iAALLHDiGHgPFSH~~E~~l~~~~~--~~~HE~~s 124 (294)
|.||==+|...-..+-..+....... ...+++. +.....+.+|--+||||-. +|.|-.+.+. ..-||-.|
T Consensus 12 ~~et~eehv~~~L~i~~~~y~~~~~~~~s~~~~ld~e~v~~~vk~AiilHDiGKa-----~~~yQ~~~~~~~~~~HE~~S 86 (230)
T COG2254 12 CVETLEEHVKRALKIFERYYKSISPAILSYGIKLDIEKVEELVKLAIILHDIGKA-----SEAYQKGRGNDCFYYHELVS 86 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHeeEEeechhh-----HHHHHHhcccCcccchhhHH
Confidence 45663366555544444433221110 0023344 3344689999999999974 4654422221 45699999
Q ss_pred HHHHHHhh
Q psy13612 125 EEVLDYLI 132 (294)
Q Consensus 125 ~~i~~~li 132 (294)
..++...+
T Consensus 87 ay~~~~~~ 94 (230)
T COG2254 87 AYFAYEVL 94 (230)
T ss_pred HHHHHHHH
Confidence 88755444
No 76
>KOG3197|consensus
Probab=20.36 E-value=3.5e+02 Score=24.29 Aligned_cols=12 Identities=25% Similarity=0.612 Sum_probs=9.5
Q ss_pred HHHHHHHhhhhcC
Q psy13612 87 LSVELAGLCHDLG 99 (294)
Q Consensus 87 ~~v~iAALLHDiG 99 (294)
+|+++ ||.||+.
T Consensus 79 rC~ki-AlVHD~A 90 (210)
T KOG3197|consen 79 RCMKI-ALVHDIA 90 (210)
T ss_pred HHHHH-HHHHHHH
Confidence 47775 6999987
No 77
>PF07268 EppA_BapA: Exported protein precursor (EppA/BapA); InterPro: IPR009894 This family consists of a number of exported protein precursor (EppA and BapA) sequences which seem to be specific to Borrelia burgdorferi (Lyme disease spirochete). bapA gene sequences are quite stable but the encoded proteins do not provoke a strong immune response in most individuals. Conversely, EppA proteins are much more antigenic but are more variable in sequence. It is thought that BapA and EppA play important roles during the B. burgdorferi infectious cycle [].
Probab=20.24 E-value=97 Score=26.06 Aligned_cols=30 Identities=37% Similarity=0.512 Sum_probs=19.2
Q ss_pred HHHHHHHHhCCCCCCCCchhhHHHhhhcCCCCCCccccccc
Q psy13612 148 LNLIKELIRGGGESLPADKRFLYQIIANKETDIDVDKWDYF 188 (294)
Q Consensus 148 ~~~I~~~I~g~~~~~~~~~~~l~~Ivs~~~~~lDaDrlDYl 188 (294)
.+.|..+|.|.+. +....++ +||.|++||-
T Consensus 86 ~~~I~~LI~gyp~------~IFdyli-----qLdsdkIDYa 115 (139)
T PF07268_consen 86 LEAINYLIDGYPD------SIFDYLI-----QLDSDKIDYA 115 (139)
T ss_pred HHHHHHHHcCCcH------HHHHHHH-----HhccccccHH
Confidence 5677788877542 1222233 5899999995
Done!