RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13612
(294 letters)
>gnl|CDD|224004 COG1078, COG1078, HD superfamily phosphohydrolases [General
function prediction only].
Length = 421
Score = 166 bits (422), Expect = 1e-48
Identities = 85/257 (33%), Positives = 131/257 (50%), Gaps = 20/257 (7%)
Query: 6 KIFNDSVHGHMKFHPICVAIIDTPQFQRLRNIKQTSTTYLVYPGACHNRFEHSLGVSYLG 65
K+ D VHG+++ + + +IDTP+FQRLR IKQ YLVYPGA H RFEHSLGV +L
Sbjct: 4 KVIKDPVHGYIELDELILELIDTPEFQRLRRIKQLGLAYLVYPGANHTRFEHSLGVYHLA 63
Query: 66 GCMVDALVHNTPGLHITAEEKLSVELAGLCHDLGHGPFSHTWEKFLRRFDSHWKHEQGSE 125
+++ L N I EE+L V LA L HD+GHGPFSHT+E L + + + HE ++
Sbjct: 64 RRLLEHLEKN-SEEEIDEEERLLVRLAALLHDIGHGPFSHTFEYVLDK-NLGFYHEDVTQ 121
Query: 126 EVL-DYLIEDN-KLGPLFESYNLNLNLIKELIRGGGESLPADKRFLYQIIANKETDIDVD 183
++ + IE N L + + + + + E++ G + QII +++D D
Sbjct: 122 RIIKNGEIEINLVLNKILDKHGFDPADVIEILYGDSNKVLV------QII---SSELDAD 172
Query: 184 KWDYFLRDGHQLNLKI-TFDYRRLLSFCTVVKRPTDSGPTIAFRNKEASNIFDMFRVRAD 242
+ DY LRD + + D R+L V R + + K I R
Sbjct: 173 RMDYLLRDSYYTGVSYGLIDLERILR----VLRVVEGR--LVISEKGIEAIESFLISRYL 226
Query: 243 LHLRAYQHCATKNTELV 259
++ + Y H ++ E +
Sbjct: 227 MYQQVYFHPVSRIAEAM 243
>gnl|CDD|214679 smart00471, HDc, Metal dependent phosphohydrolases with conserved
'HD' motif. Includes eukaryotic cyclic nucleotide
phosphodiesterases (PDEc). This profile/HMM does not
detect HD homologues in bacterial glycine aminoacyl-tRNA
synthetases (beta subunit).
Length = 124
Score = 55.8 bits (134), Expect = 7e-10
Identities = 27/144 (18%), Positives = 42/144 (29%), Gaps = 24/144 (16%)
Query: 50 ACHNRFEHSLGVSYLGGCMVDALVHNTPGLHITAEEKLSVELAGLCHDLGHGPFSHTWEK 109
+ ++ FEHSL V+ L + + L + + LA L HD+G
Sbjct: 1 SDYHVFEHSLRVAQLAAALAEELG---------LLDIELLLLAALLHDIGKPGTPD---S 48
Query: 110 FLRRFDSHWKHEQGSEEVLDYLIEDNKLGPLFESYNLNLNLIKELIRGGGESLPADKRFL 169
FL + H E+L E L + + L + L
Sbjct: 49 FLVKTSVLEDHHFIGAEILLEEEEPRILEEILR-------TAILSHHERPDGLRGEPITL 101
Query: 170 YQIIANKETDIDVDKWDYFLRDGH 193
I D+ D D
Sbjct: 102 EARIV-----KVADRLDALRADRR 120
>gnl|CDD|238032 cd00077, HDc, Metal dependent phosphohydrolases with conserved 'HD'
motif.
Length = 145
Score = 54.3 bits (130), Expect = 3e-09
Identities = 36/159 (22%), Positives = 56/159 (35%), Gaps = 17/159 (10%)
Query: 52 HNRFEHSLGVSYLGGCMVDALVHNTPGLHITAEEKLSVELAGLCHDLGHGPFSH--TWEK 109
+RFEHSL V+ L + + L ++ E+ + LA L HD+G T E+
Sbjct: 1 EHRFEHSLRVAQLARRLAEEL-------GLSEEDIELLRLAALLHDIGKPGTPDAITEEE 53
Query: 110 FLRRFDSHWKHEQGSEEVLDYLIEDNKLGPLFESYNLNLNLIKELIRGGGESLPADKRFL 169
D H E+L L+ + + + E L L + D
Sbjct: 54 SELEKD----HAIVGAEILRELLLEEVIKLIDE---LILAVDASHHERLDGLGYPDGLKG 106
Query: 170 YQIIANKETDIDVDKWDYFLRDGHQLNLKIT-FDYRRLL 207
+I D+ D RD + +I D LL
Sbjct: 107 EEITLEARIVKLADRLDALRRDSREKRRRIAEEDLEELL 145
>gnl|CDD|216815 pfam01966, HD, HD domain. HD domains are metal dependent
phosphohydrolases.
Length = 111
Score = 44.9 bits (106), Expect = 4e-06
Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 9/64 (14%)
Query: 54 RFEHSLGVSYLGGCMVDALVHNTPGLHITAEEKLSVELAGLCHDLGHGPFSHTWEKFLRR 113
EHSL V+ L + + ++ + LA L HD+G PF
Sbjct: 1 VLEHSLRVALLAREL---------AEELGELDRELLLLAALLHDIGKPPFGDEKPLLFEI 51
Query: 114 FDSH 117
F H
Sbjct: 52 FLGH 55
>gnl|CDD|223310 COG0232, Dgt, dGTP triphosphohydrolase [Nucleotide transport and
metabolism].
Length = 412
Score = 44.6 bits (106), Expect = 3e-05
Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Query: 52 HNRFEHSLGVSYLGGCMVDALVHNTPGLHITAEEKLSVELAGLCHDLGHGPFSHTWEKFL 111
R HSL V+ +G + L + E L VE A L HD+GH PF H E L
Sbjct: 67 RTRLTHSLEVAQIGRSIARELGLDLDLPF----EDL-VETACLAHDIGHPPFGHAGEDAL 121
Query: 112 RR 113
Sbjct: 122 NE 123
>gnl|CDD|235098 PRK03007, PRK03007, deoxyguanosinetriphosphate
triphosphohydrolase-like protein; Provisional.
Length = 428
Score = 43.4 bits (103), Expect = 7e-05
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 10/59 (16%)
Query: 53 NRFEHSLGVSYLGGCMVDALVHNTPGLHITAEEKLSVELAGLCHDLGHGPFSHTWEKFL 111
R HSL V+ +G + L + P L V+LAGL HD+GH P+ H E+ L
Sbjct: 70 TRLTHSLEVAQIGRGIAAGLGCD-PDL---------VDLAGLAHDIGHPPYGHNGERAL 118
>gnl|CDD|233370 TIGR01353, dGTP_triPase, deoxyguanosinetriphosphate
triphosphohydrolase, putative. dGTP triphosphohydrolase
(dgt) releases inorganic triphosphate, an unusual
activity reaction product, from GTP. Its activity has
been called limited to the Enterobacteriaceae, although
homologous sequences are detected elsewhere. This
finding casts doubt on whether the activity is shared in
other species. In several of these other species, the
homologous gene is found in an apparent operon with
dnaG, the DNA primase gene. The enzyme from E. coli was
shown to bind coopertatively to single stranded DNA. The
biological role of dgt is unknown [Purines, pyrimidines,
nucleosides, and nucleotides, Nucleotide and nucleoside
interconversions].
Length = 381
Score = 41.2 bits (97), Expect = 4e-04
Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 11/93 (11%)
Query: 25 IIDTPQFQRLRNIKQTSTTYLVYPGA----CHNRFEHSLGVSYLGGCMVDALVHNTPGLH 80
II + F+RL++ Q V+P A R HSL V+ +G + + +
Sbjct: 12 IIHSSAFRRLQDKTQ------VFPLAENDFVRTRLTHSLEVAQVGRSIANLIGLRYDLEL 65
Query: 81 ITAEEKLS-VELAGLCHDLGHGPFSHTWEKFLR 112
E A L HD+G+ PF H E+ L
Sbjct: 66 EELGPFERLAETACLAHDIGNPPFGHAGERALN 98
>gnl|CDD|234897 PRK01096, PRK01096, deoxyguanosinetriphosphate
triphosphohydrolase-like protein; Provisional.
Length = 440
Score = 36.8 bits (86), Expect = 0.011
Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 10/90 (11%)
Query: 52 HNRFEHSLGVSYLG---GCMVDALVHNT--PGLHITAEEKLSVELAGLCHDLGHGPFSHT 106
H R HSL VS +G G V + P A+ V+ A L HD+G+ PF H
Sbjct: 60 HTRLTHSLEVSCVGRSLGMRVGETLKEEKLPDWISPADIGAIVQSACLAHDIGNPPFGHF 119
Query: 107 WEKFLRRF-----DSHWKHEQGSEEVLDYL 131
E +R + + + +E D+L
Sbjct: 120 GEDAIREWFQDAAGRGFLDDLSPQERADFL 149
>gnl|CDD|234934 PRK01286, PRK01286, deoxyguanosinetriphosphate
triphosphohydrolase-like protein; Provisional.
Length = 336
Score = 35.1 bits (82), Expect = 0.033
Identities = 23/68 (33%), Positives = 27/68 (39%), Gaps = 13/68 (19%)
Query: 89 VELAGLCHDLGHGPFSHTWEKFLRRFDSHW---KHEQGSEEVLDYLIEDNKLGPLFESYN 145
E L HDLGH PF H E L + +H + S V+D L E G
Sbjct: 88 TEAIALGHDLGHTPFGHAGEDALNELMKEYGGFEHNEQSLRVVDKL-EKRYDG------- 139
Query: 146 LNLNLIKE 153
LNL E
Sbjct: 140 --LNLTWE 145
>gnl|CDD|149395 pfam08321, PPP5, PPP5 TPR repeat region. This region is specific
to the PPP5 subfamily of serine/threonine phosphatases
and contains TPR repeats.
Length = 95
Score = 31.1 bits (71), Expect = 0.16
Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 119 KHEQGSEEVLDYL---IEDNKLGPLFESYNLNLNLIKELIRGGGESLPADKRFLYQII 173
+ ++ + +D IED+ GP E + L +K+++ + K+ YQI+
Sbjct: 22 EQKRSVADSIDIENMTIEDDYDGPRLEDGKVTLEFVKDMMERFKDQKKLHKKCAYQIL 79
>gnl|CDD|235320 PRK04926, dgt, deoxyguanosinetriphosphate triphosphohydrolase;
Provisional.
Length = 503
Score = 32.6 bits (75), Expect = 0.25
Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 24/119 (20%)
Query: 25 IIDTPQFQRLRNIKQTSTTYLVYP----GACHNRFEHSLGVSYLGGCMVDALVHNTPGLH 80
II++ +RL+ Q V+P A +R HSL V +G + ++
Sbjct: 39 IINSAAIRRLQQKTQ------VFPLERNAAVRSRLTHSLEVQQVGRYIAKEILSRLKEQK 92
Query: 81 ITAEEKLS---------VELAGLCHDLGHGPFSHTWEK-----FLRRFDSHWKHEQGSE 125
+ L VE+A L HD+G+ PF H E F +R D + + ++
Sbjct: 93 LLEAYGLDELTGPFESIVEMACLMHDIGNPPFGHFGEAAINDWFRQRLDPDAESQPLTD 151
>gnl|CDD|221722 pfam12699, phiKZ_IP, phiKZ-like phage internal head proteins.
Phage internal head proteins (IP) are proteins that are
encoded by a bacteriophage and assembled into the mature
virion inside the capsid head. The most analogous
characterized IP proteins are those of bacteriophage T4,
which are known to be proteolytically processed during
phage maturation, and then subsequently injected into
the host cell during infection. The phiKZ_IP family
consists of internal head proteins encoded by phiKZ-like
phages. Each phage encodes three to six members of this
family. Members of the family reside in the head and are
cleaved during phage maturation to separate an
N-terminal propeptide from a C-terminal domain. The
C-terminal domain remains in the mature capsid. The
N-terminal propeptide domain is either mostly or
completely removed from the mature capsid. In one case,
an unrelated polypeptide is embedded in the propeptide
and also remains in the mature capsid. The phiKZ-like IP
proteins are not discernibly homologous to the T4 IP
proteins, and it is not known if the phiKZ-like IP
proteins are injected into the host cell, or have some
other function within the head. The alignment and HMM
model exclude most of the propeptide region, but include
the cleavage sites. The first 100 residues, including
the cleavage sites, constitute the most conservative
part of the seed alignment.
Length = 313
Score = 32.0 bits (73), Expect = 0.33
Identities = 11/63 (17%), Positives = 16/63 (25%), Gaps = 8/63 (12%)
Query: 100 HGPFSHTWEKFLRRFDSHWKHEQGSEEVLDYLIEDNKLGPLFESYNLNLNLIKELIRGGG 159
G + + E +D + K ESY+ E I
Sbjct: 1 AGGNGISLQAA--------AFIHSGLESIDKDLGFEKTSTALESYDATPRSKLESIAVSL 52
Query: 160 ESL 162
E L
Sbjct: 53 EDL 55
>gnl|CDD|224336 COG1418, COG1418, Predicted HD superfamily hydrolase [General
function prediction only].
Length = 222
Score = 31.6 bits (72), Expect = 0.35
Identities = 16/61 (26%), Positives = 21/61 (34%), Gaps = 16/61 (26%)
Query: 44 YLVYPGACHNRFEHSLGVSYLGGCMVDALVHNTPGLHITAEEKL---SVELAGLCHDLGH 100
L + + EHSL V+YL I EE + A L HD+G
Sbjct: 27 RLKFRTYGQHVLEHSLRVAYLAY-------------RIAEEEGVDPDLALRAALLHDIGK 73
Query: 101 G 101
Sbjct: 74 A 74
>gnl|CDD|214691 smart00486, POLBc, DNA polymerase type-B family. DNA polymerase
alpha, delta, epsilon and zeta chain (eukaryota), DNA
polymerases in archaea, DNA polymerase II in e. coli,
mitochondrial DNA polymerases and and virus DNA
polymerases.
Length = 474
Score = 31.3 bits (71), Expect = 0.68
Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 7/94 (7%)
Query: 107 WEKFLRRFDSHWKHEQGSEEVLDYLIEDNKLGPLFESYNLNLNLIKELIRGGGESLPADK 166
+ + + K + E L + + F N+ ++ +L++ DK
Sbjct: 323 YSTLVGVGEVVIKGDLIIPEDLLTIKYEKGNKYRFVKKNIRKGILPKLLKKL-----LDK 377
Query: 167 RFLYQIIANKETDIDVDKWDYFLRDGHQLNLKIT 200
R +I + + D + L D QL LK+T
Sbjct: 378 RK--EIKKLMKKEKDESEELKKLLDSRQLALKLT 409
>gnl|CDD|224529 COG1613, Sbp, ABC-type sulfate transport system, periplasmic
component [Inorganic ion transport and metabolism].
Length = 348
Score = 29.6 bits (67), Expect = 1.9
Identities = 14/71 (19%), Positives = 24/71 (33%), Gaps = 4/71 (5%)
Query: 53 NRFEHSLGVSYLGGCMVDALVHNTPGLHITAEEKLSVELAGLCHDLGHGPFSHTWEKFLR 112
NR+ HS L + + A L + +D P ++++
Sbjct: 2 NRWAHSYVAGVLLALVAGIGALGACSDVVRAAPAKDTTLLNVSYD----PTRELYKEYNP 57
Query: 113 RFDSHWKHEQG 123
F +WK E G
Sbjct: 58 AFAKYWKAETG 68
>gnl|CDD|235403 PRK05318, PRK05318, deoxyguanosinetriphosphate
triphosphohydrolase-like protein; Provisional.
Length = 432
Score = 29.5 bits (67), Expect = 2.5
Identities = 29/114 (25%), Positives = 41/114 (35%), Gaps = 38/114 (33%)
Query: 53 NRFEHSLGVSYLGGCMVDALVHNTPGLHITAEEKLS----VELAGLCHDLGHGPFSHTWE 108
R HSL V+ +G +V L + L +E L HD+GH PF H
Sbjct: 58 TRLTHSLEVAQIGTGIVAQLKKE---KQPELKPLLPSDSLIESLCLAHDIGHPPFGH--- 111
Query: 109 KFLRRFDSHWKHEQGSEEVLDYLIEDN--------------KLGPLFESYNLNL 148
G E L+Y++ D+ KL P E + +NL
Sbjct: 112 --------------GGEVALNYMMRDHGGFEGNGQTFRILTKLEPYTEHFGMNL 151
>gnl|CDD|200546 cd10920, CE4_WbmS, Catalytic domain of a putative polysaccharide
deacetylase WbmS from Bordetella bronchiseptica and
similar proteins. This family is represented by a
putative polysaccharide deacetylase encoded by the
O-antigen-related gene wbmS in Bordetella
bronchiseptica. Although its precise function remains
unknown, it has been suggested that WbmS might be
involved in the biosynthesis of O-antigen, an important
component of the gram-negative bacterial outer membrane,
and may also play a role in sugar phosphate transfer.
Structural superposition and sequence comparison show
that WbmS consists of a conserved domain similar to the
7-stranded barrel catalytic domain of polysaccharide
deacetylases (DACs) from the carbohydrate esterase 4
(CE4) superfamily, which removes N-linked acetyl groups
from cell wall polysaccharides.
Length = 233
Score = 29.0 bits (65), Expect = 2.6
Identities = 8/42 (19%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 18 FHPICVAIIDTPQFQRLRNIKQTSTTYLVYPGACHNRFEHSL 59
FHPI + ++T +R +IK + + ++
Sbjct: 183 FHPIHI-YLNTESLERYEDIKDFVSNPDWLSFSVDRVANKTM 223
>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y. Members of this family are
RNase Y, an endoribonuclease. The member from Bacillus
subtilis, YmdA, has been shown to be involved in
turnover of yitJ riboswitch [Transcription, Degradation
of RNA].
Length = 514
Score = 28.7 bits (65), Expect = 3.5
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 16/50 (32%)
Query: 53 NRFEHSLGVSYLGGCMVDALVHNTPGLHITAEEKLSVELA---GLCHDLG 99
N +HS+ V++L G M AE V+LA GL HD+G
Sbjct: 329 NVLQHSIEVAHLAGIM-------------AAELGEDVKLAKRAGLLHDIG 365
>gnl|CDD|180820 PRK07064, PRK07064, hypothetical protein; Provisional.
Length = 544
Score = 28.8 bits (65), Expect = 3.8
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 13/57 (22%)
Query: 52 HNRFEHSLGVSYLG---------GCMVDALVHNTPGLHITAEEKLSVELAGLCHDLG 99
H R LGV+ G +V+AL TP LHIT + +E L DLG
Sbjct: 60 HARVSGGLGVALTSTGTGAGNAAGALVEALTAGTPLLHITGQ----IETPYLDQDLG 112
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 28.6 bits (65), Expect = 4.0
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 16/46 (34%)
Query: 57 HSLGVSYLGGCMVDALVHNTPGLHITAEEKLSVELA---GLCHDLG 99
HS+ V++L G M AE L V+LA GL HD+G
Sbjct: 339 HSIEVAHLAGLM-------------AAELGLDVKLAKRAGLLHDIG 371
>gnl|CDD|222346 pfam13728, TraF, F plasmid transfer operon protein. TraF protein
undergoes proteolytic processing associated with export.
The 19 amino acids at the amino terminus of the
polypeptides appear to constitute a typical membrane
leader peptide - not included in this family, while the
remainder of the molecule is predicted to be primarily
hydrophilic in character. F plasmid TraF and TraH are
required for F pilus assembly and F plasmid transfer,
and they are both localised to the outer membrane in the
presence of the complete F transfer region, especially
TraV, the putative anchor.
Length = 215
Score = 27.9 bits (63), Expect = 5.9
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 24 AIIDTPQFQRLRNIKQTSTTYLVYP 48
+DT Q QRL +K T +LV P
Sbjct: 169 NRVDTGQAQRL-GVKTTPALFLVDP 192
>gnl|CDD|233487 TIGR01596, cas3_HD, CRISPR-associated endonuclease Cas3-HD.
CRISPR/Cas systems are widespread, mobile systems for
host defense against invasive elements such as phage.
In these systems, Cas3 designates one of the core
proteins shared widely by multiple types of CRISPR/Cas
system. This model represents an HD-like endonuclease
that occurs either separately or as the N-terminal
region of Cas3, the helicase-containing
CRISPR-associated protein [Mobile and extrachromosomal
element functions, Other].
Length = 177
Score = 27.5 bits (61), Expect = 6.4
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 56 EHSLGVSYLGGCMVDALVHNTPGLHITAEEKLSVELAGLCHDLG 99
EH L V+ + + + + + E L L L HD+G
Sbjct: 3 EHLLDVAAVAEKLKNLRIKIADLIGKDLRELL--ALLALLHDIG 44
>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated.
Length = 4334
Score = 28.2 bits (63), Expect = 7.8
Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 16/63 (25%)
Query: 158 GGESLPADKRFLYQIIANKETDIDVDKWDYFLRDGHQLNLKITFDYRRLLSFCTVVKRPT 217
GG SL A QI++ DV+ L L+ F+ L +F V R
Sbjct: 1666 GGHSLLAT-----QIVSRTRQACDVE-----------LPLRALFEASELGAFAEQVARIQ 1709
Query: 218 DSG 220
+G
Sbjct: 1710 AAG 1712
>gnl|CDD|184455 PRK14017, PRK14017, galactonate dehydratase; Provisional.
Length = 382
Score = 27.6 bits (62), Expect = 8.8
Identities = 23/92 (25%), Positives = 30/92 (32%), Gaps = 32/92 (34%)
Query: 50 ACHNRF--EHSLGVSY-LGGCMVDALVHNT--------------PGLHITAEEKLSVELA 92
N F E SLG+ Y G ++D + + PGL I +E E A
Sbjct: 302 VSPNAFIQEQSLGIHYNQGADLLDYVKNKEVFAYEDGFVAIPTGPGLGIEIDEAKVRERA 361
Query: 93 GLCHDLGHGPFSHTWEKFLRRFDSHWKHEQGS 124
HD P W+H GS
Sbjct: 362 KTGHDW-RNP--------------VWRHADGS 378
>gnl|CDD|130488 TIGR01421, gluta_reduc_1, glutathione-disulfide reductase,
animal/bacterial. The tripeptide glutathione is an
important reductant, e.g., for maintaining the cellular
thiol/disulfide status and for protecting against
reactive oxygen species such as hydrogen peroxide.
Glutathione-disulfide reductase regenerates reduced
glutathione from oxidized glutathione (glutathione
disulfide) + NADPH. This model represents one of two
closely related subfamilies of glutathione-disulfide
reductase. Both are closely related to trypanothione
reductase, and separate models are built so each of the
three can describe proteins with conserved function.
This model describes glutathione-disulfide reductases of
animals, yeast, and a number of animal-resident bacteria
[Energy metabolism, Electron transport].
Length = 450
Score = 27.5 bits (61), Expect = 9.0
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 5/33 (15%)
Query: 87 LSVELAGLCHDLG---HGPFSHTWEKFLRRFDS 116
++VELAG+ H LG H H E+ LR FDS
Sbjct: 177 IAVELAGVLHGLGSETHLVIRH--ERVLRSFDS 207
>gnl|CDD|219442 pfam07514, TraI_2, Putative helicase. Some members of this family
have been annotated as helicases.
Length = 326
Score = 27.3 bits (61), Expect = 9.8
Identities = 23/109 (21%), Positives = 34/109 (31%), Gaps = 44/109 (40%)
Query: 91 LAGLCHDLG-------------------HGPFSHTW--EKFLRRFDSHWKHEQGSE---- 125
A L HDLG GP H W + R+ WK G +
Sbjct: 109 YAALLHDLGKPLVDLEVEDRDGTQWHPWLGPL-HQWARFRGAERYFIRWKPRHGRDYALH 167
Query: 126 --------------EVLDYLIEDNKL-GPLFES---YNLNLNLIKELIR 156
EVLD+L + ++ L + ++ EL+R
Sbjct: 168 GALSSLLLNRILPPEVLDWLSGNPEIYSALLYALSGQYDGAGVLAELVR 216
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.139 0.440
Gapped
Lambda K H
0.267 0.0735 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,232,044
Number of extensions: 1457930
Number of successful extensions: 1110
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1100
Number of HSP's successfully gapped: 40
Length of query: 294
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 198
Effective length of database: 6,679,618
Effective search space: 1322564364
Effective search space used: 1322564364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (26.5 bits)