RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13612
(294 letters)
>3u1n_A SAM domain and HD domain-containing protein 1; deoxynucleotide
triphosphohydrolase, hydrolase; 3.10A {Homo sapiens}
Length = 528
Score = 249 bits (637), Expect = 1e-79
Identities = 125/276 (45%), Positives = 160/276 (57%), Gaps = 20/276 (7%)
Query: 1 MPANHKIFNDSVHGHMKFHPICVAIIDTPQFQRLRNIKQTSTTYLVYPGACHNRFEHSLG 60
+ + D +HGH++ HP+ V IIDTPQFQRLR IKQ Y V+PGA HNRFEHSLG
Sbjct: 13 LEVLFQGPGDPIHGHIELHPLLVRIIDTPQFQRLRYIKQLGGGYYVFPGASHNRFEHSLG 72
Query: 61 VSYLGGCMVDALVHNTPGLHITAEEKLSVELAGLCHDLGHGPFSHTWEKFLR---RFDSH 117
V YL GC+V AL P L I+ + L V++AGLCHDLGHGPFSH ++ R +
Sbjct: 73 VGYLAGCLVHALGEKQPELQISERDVLCVQIAGLCHDLGHGPFSHMFDGRFIPLARPEVK 132
Query: 118 WKHEQGSEEVLDYLIEDNKLGPLFESYNLN----LNLIKELIRG-----------GGESL 162
W HEQGS + ++LI N + P+ E Y L + IKE I G +
Sbjct: 133 WTHEQGSVMMFEHLINSNGIKPVMEQYGLIPEEDICFIKEQIVGPLESPVEDSLWPYKGR 192
Query: 163 PADKRFLYQIIANKETDIDVDKWDYFLRDGHQLNLKITFDYRRLLSFCTVVKRPTDSGPT 222
P +K FLY+I++NK IDVDKWDYF RD H L ++ FDY+R + F V D+
Sbjct: 193 PENKSFLYEIVSNKRNGIDVDKWDYFARDCHHLGIQNNFDYKRFIKFARVC--EVDNELR 250
Query: 223 IAFRNKEASNIFDMFRVRADLHLRAYQHCATKNTEL 258
I R+KE N++DMF R LH RAYQH +
Sbjct: 251 ICARDKEVGNLYDMFHTRNSLHRRAYQHKVGNIIDT 286
>2hek_A Hypothetical protein; predominantly alpha helical protein with GDP
binding site AN site being FAR from EACH other,
structural genomics, PSI; HET: GDP; 2.00A {Aquifex
aeolicus} SCOP: a.211.1.1
Length = 371
Score = 231 bits (590), Expect = 2e-74
Identities = 71/248 (28%), Positives = 118/248 (47%), Gaps = 30/248 (12%)
Query: 6 KIFNDSVHGHMKFHPICVAIIDTPQFQRLRNIKQTSTTYLVYPGACHNRFEHSLGVSYLG 65
K F+D ++G ++ + +ID+ FQRLR +KQ YLV+P A H RFEHSLGV ++
Sbjct: 3 KEFSDPLYGFVRVGEAGLRLIDSFPFQRLRYVKQLGLAYLVFPSAQHTRFEHSLGVYHIT 62
Query: 66 GCMVDALVHNTPGLHITAEEKLSVELAGLCHDLGHGPFSHTWEKFLRRFDSHWKHEQGSE 125
+ + + +EK V+LAGL HDLGH PFSHT E L R SH E
Sbjct: 63 ERICE---------SLKVKEKELVKLAGLLHDLGHPPFSHTTEVLLPRERSH-------E 106
Query: 126 EVLDYLIEDNKLGPLFESY--NLNLNLIKELIRGGGESLPADKRFLYQIIANKETDIDVD 183
+ + +I++ ++ + + + ++ + + G E ++ L +II + D
Sbjct: 107 DFTERVIKETEIYEILKQDYSHEDIERLVRITLGKPEDEE--EKLLSEIITG---EFGSD 161
Query: 184 KWDYFLRDGHQLNLKI-TFDYRRLLSFCTVVKRPTDSGPTIAFRNKEASNIFDMFRVRAD 242
+ DY RD + + FDY RL+S V + + + + R
Sbjct: 162 RMDYLRRDAYFCGVSYGFFDYDRLISTLRVYEN------KVVVDESGLRALENFLISRYF 215
Query: 243 LHLRAYQH 250
++++ Y H
Sbjct: 216 MYVQVYFH 223
>2q14_A Phosphohydrolase; BT4208, HD domain, structural genomics, JO center
for structural genomics, JCSG; HET: MSE ADP; 2.20A
{Bacteroides thetaiotaomicron vpi-5482}
Length = 410
Score = 217 bits (555), Expect = 1e-68
Identities = 71/261 (27%), Positives = 113/261 (43%), Gaps = 30/261 (11%)
Query: 1 MPANHKIFNDSVHGHMKF-HPICVAIIDTPQFQRLRNIKQTSTTYLVYPGACHNRFEHSL 59
MP KI ND V G + + I+ P QRL IKQ + +VYPGA H RF+HSL
Sbjct: 2 MPYERKIINDPVFGFINIPKGLLYDIVRHPLLQRLTRIKQVGLSSVVYPGAQHTRFQHSL 61
Query: 60 GVSYLGGCMVDALVHNTPGLHITAEEKLSVELAGLCHDLGHGPFSHTWEKFLRRFDSHWK 119
G YL + L I E +V+ A L HD+GHGPFSH E + +
Sbjct: 62 GAFYLMSEAITQLTSKGNF--IFDSEAEAVQAAILLHDIGHGPFSHVLEDTIVQ---GVS 116
Query: 120 HEQGSEEVLDYLIEDNKLGPLFESYNLNLNLIKELIRGGGESLPADKRFLYQIIANKETD 179
HE+ S +++ + ++ N L+L ++ + KRFL+Q+++
Sbjct: 117 HEEISLMLMERMNKE---------MNGQLSLAIQIFKDEYP-----KRFLHQLVSG---Q 159
Query: 180 IDVDKWDYFLRDGHQLNLKI-TFDYRRLLSFCTVVKRPTDSGPTIAFRNKEASNIFDMFR 238
+D+D+ DY RD + R++ V + +K +I +
Sbjct: 160 LDMDRLDYLRRDSFYTGVTEGNIGSARIIKMLDVADD------RLVIESKGIYSIENFLT 213
Query: 239 VRADLHLRAYQHCATKNTELV 259
R ++ + Y H + E +
Sbjct: 214 ARRLMYWQVYLHKTSVAYERM 234
>3irh_A HD domain protein; phosphohydrolase, dntpase, structural genomics,
P protein structure initiative, midwest center for
structural genomics; HET: DGT DTP; 2.40A {Enterococcus
faecalis} PDB: 2o6i_A*
Length = 480
Score = 200 bits (510), Expect = 3e-61
Identities = 68/260 (26%), Positives = 111/260 (42%), Gaps = 27/260 (10%)
Query: 6 KIFNDSVHGHMKF-HPICVAIIDTPQFQRLRNIKQTSTTYLVYPGACHNRFEHSLGVSYL 64
K+F D VH ++ H + + +I++ + QRLR IKQ T+ + GA H+RF HSLGV +
Sbjct: 38 KVFRDPVHNYIHVQHQVILDLINSAEVQRLRRIKQLGTSSFTFHGAEHSRFSHSLGVYEI 97
Query: 65 GGCMVDALVHNTP-----GLHITAEEKLSVELAGLCHDLGHGPFSHTWEKFLRRFDSHWK 119
+ + N +E+L A L HD+GHGP+SHT+E
Sbjct: 98 TRRICEIFQRNYSVERLGENGWNDDERLITLCAALLHDVGHGPYSHTFEHIF-----DTN 152
Query: 120 HEQGSEEVLDYLIEDNKLGPLFESYNLNLNLIKELIRGGGESLPADKRFLYQIIANKETD 179
HE + +++ + L + +I + Q+I++
Sbjct: 153 HEAITVQIITSPETEVY-QILNRVSADFPEKVASVITKQYP-----NPQVVQMISS---Q 203
Query: 180 IDVDKWDYFLRDGHQLNLKI-TFDYRRLLSFCTVVKRPTDSGPTIAFRNKEASNIFDMFR 238
ID D+ DY LRD + + TFD R+L K IAF + D
Sbjct: 204 IDADRMDYLLRDAYFTGTEYGTFDLTRILRVIRPYK------GGIAFAMNGMHAVEDYIV 257
Query: 239 VRADLHLRAYQHCATKNTEL 258
R ++++ Y H ++ E+
Sbjct: 258 SRYQMYVQVYFHPVSRGMEV 277
>2pgs_A Putative deoxyguanosinetriphosphate triphosphohyd;
deoxyguanosinetriphosphate triphsphohydrolase,
pseudomonas S PV. phaseolicola 1448A; 2.35A {Pseudomonas
syringae PV}
Length = 451
Score = 46.6 bits (111), Expect = 4e-06
Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 4/87 (4%)
Query: 52 HNRFEHSLGVSYLGGCMVDALVHNTPGLHITAEEKLS----VELAGLCHDLGHGPFSHTW 107
H R HSL VS +G + + + V+ A L HD+G+ PF H+
Sbjct: 61 HTRLTHSLEVSCVGRSLGMRVGETLRAALPDWCDPSDLGMVVQSACLAHDIGNPPFGHSG 120
Query: 108 EKFLRRFDSHWKHEQGSEEVLDYLIED 134
E +R + + + + + D
Sbjct: 121 EDAIRNWFNQAAGRGWLDAMSETERND 147
>3bg2_A DGTP triphosphohydrolase; structural genomics, NYSGXRC, target
10395N, triphosphohydro PSI-2, protein structure
initiative; 1.95A {Leeuwenhoekiella blandensis}
Length = 444
Score = 46.2 bits (110), Expect = 5e-06
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 9/92 (9%)
Query: 52 HNRFEHSLGVS----YLGGCMVDALVHNTPGLHITAEEKLS-----VELAGLCHDLGHGP 102
H R HSL VS LG + L+ P L K + V A L HD+G+ P
Sbjct: 63 HTRLTHSLEVSVVGRSLGRMVGKKLLEKYPHLEQVYGYKFNDFGAIVAAAALAHDIGNPP 122
Query: 103 FSHTWEKFLRRFDSHWKHEQGSEEVLDYLIED 134
F H+ EK + F + ++ + + +D
Sbjct: 123 FGHSGEKAIGEFFKNGYGKRYKDSLTAKEYQD 154
>2dqb_A Deoxyguanosinetriphosphate triphosphohydrolase, P; dntpase, DNTP,
single-stranded DNA, DNA dGTPase, HD superfamily,
structural genomics; 2.20A {Thermus thermophilus}
Length = 376
Score = 39.6 bits (93), Expect = 7e-04
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 13/82 (15%)
Query: 53 NRFEHSLGVSYLGGCMVDALVHNTPGLHITAEEKLSVELAGLCHDLGHGPFSHTWEKFLR 112
R H+L V+ + + AL GL+ E L E L HDLGH PF HT E L
Sbjct: 75 TRLTHTLEVAQVSRSIARAL-----GLN----EDL-TEAIALSHDLGHPPFGHTGEHVLN 124
Query: 113 RFDS---HWKHEQGSEEVLDYL 131
++H + +L +L
Sbjct: 125 ALMQDHGGFEHNAQALRILTHL 146
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.1 bits (88), Expect = 0.003
Identities = 52/313 (16%), Positives = 88/313 (28%), Gaps = 120/313 (38%)
Query: 2 PANHKIFNDSVHGHMKFHPICVAI------IDTPQFQRLRNIKQTSTTY---LVYPGACH 52
+N +F G+ + VAI D F+ LR++ QT L+ A
Sbjct: 140 KSNSALFRAVGEGNAQL----VAIFGGQGNTDDY-FEELRDLYQTYHVLVGDLIKFSAET 194
Query: 53 ----NRFEHSLGVSYLGGCMVDALVHN---TPGLHITAEEKLSVELAGL---------CH 96
R + G + + N TP +S L G+
Sbjct: 195 LSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAK 254
Query: 97 DLGHGPF------------------------SHTWEKFLR--------------RFDSHW 118
LG P + +WE F R +
Sbjct: 255 LLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAY 314
Query: 119 KHEQGSEEVLDYLIEDNKLGPLFESY-----NLNLNLIKELIRGGGESLPADKRFLYQII 173
+ +L+ +E+N+ P S NL +++ + LPA K+ + I
Sbjct: 315 PNTSLPPSILEDSLENNEGVP---SPMLSISNLTQEQVQDYVNKTNSHLPAGKQ-VE--I 368
Query: 174 ANKETDIDVDKWDYFLRDGHQLNLKITFDYRRLLSFCTVVKRPTDSGPT-------IAFR 226
+ L +G + + VV SGP + R
Sbjct: 369 S--------------LVNGAK-------------NL--VV-----SGPPQSLYGLNLTLR 394
Query: 227 NKEASNIFDMFRV 239
+A + D R+
Sbjct: 395 KAKAPSGLDQSRI 407
Score = 33.9 bits (77), Expect = 0.071
Identities = 28/172 (16%), Positives = 57/172 (33%), Gaps = 54/172 (31%)
Query: 98 LGHGPFSHTW--------------EKFLRRF----DSHWKHEQGSEEV------LDYL-- 131
L HG H E+F + + ++ + L Y+
Sbjct: 11 LSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSS 70
Query: 132 -IEDNKLGPLFESYNLNLNLIKELIRGGGE--SLPADKRFLYQIIANKETDIDVDKWDYF 188
+E +K+G + NL L + G + +L A +++ +T + K
Sbjct: 71 LVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAA------KLLQENDTTLVKTK--EL 122
Query: 189 LRDGHQLNLKITFDYRRLLSFCTVVKRPTDSGPTIA-FR--NKEASNIFDMF 237
++ +Y ++ + KRP D A FR + + + +F
Sbjct: 123 IK-----------NY---ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIF 160
Score = 33.1 bits (75), Expect = 0.11
Identities = 24/117 (20%), Positives = 39/117 (33%), Gaps = 29/117 (24%)
Query: 2 PANHKIFNDSVHGHMKFHP--ICVAIIDTPQFQRLRNIKQTSTTYLVY---------PGA 50
PA+ I D V ++ F+ I + + DT LR + + + +V
Sbjct: 434 PASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETT 493
Query: 51 CHNRFEHSL-----GVSYLGGCMVDALVHNTPGLHITAEEKLSVELAGLCHDLGHGP 102
+ H L G S LG + T G+ + +AG L P
Sbjct: 494 TQFKATHILDFGPGGASGLGV-LTHRNKDGT-GVRVI--------VAG---TLDINP 537
Score = 28.5 bits (63), Expect = 3.4
Identities = 16/83 (19%), Positives = 27/83 (32%), Gaps = 19/83 (22%)
Query: 226 RNKEASNIFDMFRVRADLHLR-AY----QHCATKN-TELV------RRPSIDE--VNLCC 271
+K A ++++ RAD H + Y N L + I E +
Sbjct: 1638 TSKAAQDVWN----RADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIF 1693
Query: 272 RGSVDGFNRSTA-FDYVWRQLNS 293
VDG ++ F + S
Sbjct: 1694 ETIVDGKLKTEKIFKEINEHSTS 1716
Score = 28.1 bits (62), Expect = 4.7
Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 46/145 (31%)
Query: 122 QGSEEV---LDYLIEDNKLGPLFESYNLNLNLIKELIRGGGESLPADKRF-------LYQ 171
QGS+E +D L+++ ++ AD F +
Sbjct: 1624 QGSQEQGMGMD----------LYKTSKAAQDVWNR----------ADNHFKDTYGFSILD 1663
Query: 172 IIANKETDIDVDKWDYFLRDGHQLNLKITFDYRRLLSFCTVVKRPTDSGPTIAFRNKEAS 231
I+ N ++ + +F G + +I +Y ++ F T+V + N+ ++
Sbjct: 1664 IVINNPVNLTI----HF---GGEKGKRIRENYSAMI-FETIVDGKLKTEKIFKEINEHST 1715
Query: 232 NIFDMFRVRADLHLRAYQHCATKNT 256
+ FR L L AT+ T
Sbjct: 1716 SY--TFRSEKGL-LS-----ATQFT 1732
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.9 bits (87), Expect = 0.003
Identities = 47/376 (12%), Positives = 102/376 (27%), Gaps = 116/376 (30%)
Query: 6 KIFNDSVHGHMKFHPICVAIIDTPQFQRLRN--IKQTSTTYLVYPG------------AC 51
+++ND+ F V+ + + +LR ++ ++ G C
Sbjct: 118 RLYNDNQ----VFAKYNVSRLQ--PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVC 171
Query: 52 HN-RFEHSL--GVSYL--GGCMVDALVHNTPGLHITAEEKLSVELAGLCHDLGHGPFS-- 104
+ + + + + +L C N+P + +KL ++ +
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNC-------NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224
Query: 105 ---HTWEKFLRRFDSHWKHEQG--------SEEVLDY-------LI-------------- 132
H+ + LRR +E + + + L+
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAA 284
Query: 133 ------EDNKLGPLFESYNLNLNLIKELIRGGGESLPADKR----FLYQIIANKETDIDV 182
D+ L +L L+K L + LP + IIA D +
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSL-LLKYL-DCRPQDLPREVLTTNPRRLSIIAESIRD-GL 341
Query: 183 DKWDYFLRDGH-QLNLKI--------TFDYRRLLSFCTV----VKRPTDSGPTIAF---- 225
WD + +L I +YR++ +V PT ++
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI---LLSLIWFD 398
Query: 226 -RNKEASNIFDMFRVRA--------------DLHLRAYQHCATKNTELVRRPSIDEVNLC 270
+ + + + ++L + + R +D N+
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA--LHRSIVDHYNIP 456
Query: 271 CRGSVDGFNRSTAFDY 286
D Y
Sbjct: 457 KTFDSDDLIPPYLDQY 472
Score = 35.6 bits (81), Expect = 0.017
Identities = 30/244 (12%), Positives = 67/244 (27%), Gaps = 50/244 (20%)
Query: 7 IFNDSVHGHMKFHPICVAIIDTPQFQRL-RNIKQTSTTYLVYPGACHNRFEHSL------ 59
+F S H I T + ++ ++ +V H SL
Sbjct: 380 VFPPSAH------------IPTILLSLIWFDVIKSDVMVVV--NKLHKY---SLVEKQPK 422
Query: 60 -GVSYLGGCMVDALVH--NTPGLHITAEEKLSVELAGLCHDLGHGPFSHTWEKFLRRFDS 116
+ ++ V N LH + + ++ DL + +
Sbjct: 423 ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH--- 479
Query: 117 HWKHEQGSEEVLDYLIEDNKLGPLFESYNLNLNLIKELIRGGGESLPADKRFLYQIIANK 176
H K+ + E + LF L+ +++ IR + A L
Sbjct: 480 HLKNIEHPERM-----------TLFRMVFLDFRFLEQKIRHDSTAWNASGSIL------- 521
Query: 177 ETDIDVDKWDYFLRDGHQLNLKITFDYRRLLSFC--TVVKRPTDSGPTIAFRNKEASNIF 234
T + + ++ D ++ L ++ IA ++ +
Sbjct: 522 NTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFE 581
Query: 235 DMFR 238
+ +
Sbjct: 582 EAHK 585
Score = 32.1 bits (72), Expect = 0.21
Identities = 24/157 (15%), Positives = 56/157 (35%), Gaps = 32/157 (20%)
Query: 97 DLGHGPFSHTWEKFLRRFDSHWKHEQGSEEVLDYLIEDNKLGPLFESYNLNLNLIKELIR 156
D G + ++ L F+ + ++V D + I +I
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDM------PKSILSKEE-----IDHIIM 56
Query: 157 GGGESLPADKRFLYQIIANKETDIDVDKWDYFLRDGHQLNLKITFDYRRLLS-FCTVVKR 215
L+ + +K+ ++ F+ + ++N Y+ L+S T ++
Sbjct: 57 SKDAVSGT--LRLFWTLLSKQEEM----VQKFVEEVLRIN------YKFLMSPIKTEQRQ 104
Query: 216 PTDSGPTIAF---RNKEASN--IFDMFRV-RADLHLR 246
P S T + R++ ++ +F + V R +L+
Sbjct: 105 P--SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK 139
>2r8q_A Class I phosphodiesterase PDEB1; leishimaniasis, parasite inhibitor
selectivity, CAMP phosphodiesterase, hydrolase; HET:
IBM; 1.50A {Leishmania major}
Length = 359
Score = 33.7 bits (77), Expect = 0.055
Identities = 13/49 (26%), Positives = 17/49 (34%), Gaps = 4/49 (8%)
Query: 52 HNRFEHSLGVSYLGGCMVDALVHNTPGLHITAEEKLSVELAGLCHDLGH 100
HN F H + V L +T E + + L HDL H
Sbjct: 100 HN-FYHVVDVCQTLHTY---LYTGKASELLTELECYVLLVTALVHDLDH 144
>3ccg_A HD superfamily hydrolase; NP_347894.1, HD domain, structural
genomics, joint center FO structural genomics, JCSG;
HET: MSE; 1.50A {Clostridium acetobutylicum atcc 824}
Length = 190
Score = 32.9 bits (75), Expect = 0.064
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 10/47 (21%)
Query: 53 NRFEHSLGVSYLGGCMVDALVHNTPGLHITAEEKLSVELAGLCHDLG 99
R++HSLGV + A ++N EK +AGL HD
Sbjct: 19 KRYKHSLGVMDTAVRL--AGIYNED------TEK--ARIAGLVHDCA 55
>3g4g_A DPDE3, PDE43, CAMP-specific 3',5'-cyclic phosphodiesterase 4D;
PDE4D, UCR2, alternative splicing, cytoplasm,
cytoskeleton, hydrolase, membrane; HET: D71; 2.30A {Homo
sapiens} PDB: 3g45_A*
Length = 421
Score = 33.3 bits (76), Expect = 0.083
Identities = 12/49 (24%), Positives = 16/49 (32%), Gaps = 4/49 (8%)
Query: 52 HNRFEHSLGVSYLGGCMVDALVHNTPGLHITAEEKLSVELAGLCHDLGH 100
HN H+ V + L T E L+ A HD+ H
Sbjct: 162 HN-NIHAADVVQSTHVL---LSTPALEAVFTDLEILAAIFASAIHDVDH 206
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 32.8 bits (74), Expect = 0.090
Identities = 10/68 (14%), Positives = 17/68 (25%), Gaps = 25/68 (36%)
Query: 163 PADKRFL------YQIIA----NKETDID-----------VD----KWDYFLRDGHQLNL 197
K+FL ++ IA E VD K ++ +
Sbjct: 158 QKGKKFLVIAYEPFENIAIELPPNEILFSENNDMDNNNDGVDELNKKCTFWDAISKLYYV 217
Query: 198 KITFDYRR 205
+ F
Sbjct: 218 QFFFKQAE 225
>3hr1_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A;
PDE 10A, PDE10 inhibitors, allosteric enzyme,
alternative splicing; HET: PF9; 1.53A {Rattus
norvegicus} PDB: 3hqy_A* 3hqz_A* 3hqw_A*
Length = 380
Score = 33.0 bits (75), Expect = 0.097
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 52 HNRFEHSLGVSYLGGCMVDALVHNTPGLHITAEEKLSVELAGLCHDLGH 100
HN ++H++ V++ ++ T E+ + +A LCHDL H
Sbjct: 111 HN-WKHAVTVAHCMYAIL-----QNNNGLFTDLERKGLLIACLCHDLDH 153
>2our_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A;
PDE10, substrate specificity, hydrolase; HET: CMP; 1.45A
{Homo sapiens} PDB: 2ous_A 2ouu_A* 3sn7_A* 3sni_A*
3snl_A* 4dff_A* 2wey_A* 2oun_A* 2oup_A 2ouq_A* 2ouv_A
2ouy_A* 4ael_A* 2y0j_A* 4ddl_A* 3uuo_A* 3ui7_A* 2o8h_A*
2ovv_A* 2ovy_A* ...
Length = 331
Score = 32.8 bits (75), Expect = 0.097
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 52 HNRFEHSLGVSYLGGCMVDALVHNTPGLHITAEEKLSVELAGLCHDLGH 100
HN ++H++ V++ ++ T E+ + +A LCHDL H
Sbjct: 80 HN-WKHAVTVAHCMYAIL-----QNNHTLFTDLERKGLLIACLCHDLDH 122
>1taz_A Calcium/calmodulin-dependent 3',5'-cyclic nucleot phosphodiesterase
1B; PDE1B, hydrolase; HET: CME; 1.77A {Homo sapiens}
SCOP: a.211.1.2
Length = 365
Score = 32.9 bits (75), Expect = 0.11
Identities = 17/75 (22%), Positives = 25/75 (33%), Gaps = 6/75 (8%)
Query: 26 IDTPQFQRLRNIKQTSTTYLVYPGACHNRFEHSLGVSYLGGCMVDALVHNTPGLHITAEE 85
I T + T Y Y HN H+ V+ C L+ ++ E
Sbjct: 58 IPTVFLMSF--LDALETGYGKYKNPYHN-QIHAADVTQTVHCF---LLRTGMVHCLSEIE 111
Query: 86 KLSVELAGLCHDLGH 100
L++ A HD H
Sbjct: 112 LLAIIFAAAIHDYEH 126
>1y2k_A DPDE3, PDE43, CAMP-specific 3',5'-cyclic phosphodiesterase 4D;
PDE4D, pyrazole, hydrolase; HET: 7DE; 1.36A {Homo
sapiens} SCOP: a.211.1.2 PDB: 1xon_A* 1xoq_A* 1xom_A*
1xor_A* 1y2c_A* 1y2d_A* 1y2e_A* 1y2b_A* 3iak_A* 3k4s_A*
1tbb_A* 1tb7_A* 3sl5_A* 3sl4_A* 2fm5_A* 3sl3_A* 2fm0_A*
3sl6_A* 3sl8_A* 1oyn_A* ...
Length = 349
Score = 32.8 bits (75), Expect = 0.11
Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 8/51 (15%)
Query: 52 HNRFEHSLGVSYLGGCMVDALVHNTPGL--HITAEEKLSVELAGLCHDLGH 100
HN H+ V ++ +TP L T E L+ A HD+ H
Sbjct: 96 HN-NIHAADVVQSTHVLL-----STPALEAVFTDLEILAAIFASAIHDVDH 140
>1f0j_A PDE4B, phosphodiesterase 4B; PDE phosphodiesterase, hydrolase;
1.77A {Homo sapiens} SCOP: a.211.1.2 PDB: 1ro6_A*
1ro9_A* 1ror_A* 3hmv_A* 1tb5_A* 1xm6_A* 1xlx_A* 1xm4_A*
1xlz_A* 1xmu_A* 1xmy_A* 1xn0_A* 1xos_A* 1xot_B* 1y2h_A*
1y2j_A* 3kkt_A* 3g4i_A* 3g4k_A* 3g4l_A* ...
Length = 377
Score = 32.9 bits (75), Expect = 0.11
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 8/51 (15%)
Query: 52 HNRFEHSLGVSYLGGCMVDALVHNTPGL--HITAEEKLSVELAGLCHDLGH 100
HN H+ V+ ++ +TP L T E L+ A HD+ H
Sbjct: 83 HN-SLHAADVAQSTHVLL-----STPALDAVFTDLEILAAIFAAAIHDVDH 127
>2ogi_A Hypothetical protein SAG1661; structural genomics, joint center
for structural genomics, J protein structure
initiative; HET: GDP MES; 1.85A {Streptococcus
agalactiae serogroup V}
Length = 196
Score = 32.2 bits (73), Expect = 0.12
Identities = 14/47 (29%), Positives = 17/47 (36%), Gaps = 10/47 (21%)
Query: 53 NRFEHSLGVSYLGGCMVDALVHNTPGLHITAEEKLSVELAGLCHDLG 99
RF H LGV + A + +EK LA L HD
Sbjct: 26 KRFNHVLGVERAAIEL--AERYGYD------KEK--AGLAALLHDYA 62
>1zkl_A HCP1, TM22, high-affinity CAMP-specific 3',5'-cyclic
phosphodiesterase 7A; PDE, hydrolase; HET: IBM; 1.67A
{Homo sapiens} PDB: 3g3n_A*
Length = 353
Score = 32.4 bits (74), Expect = 0.14
Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 8/51 (15%)
Query: 52 HNRFEHSLGVSYLGGCMVDALVHNTPGL--HITAEEKLSVELAGLCHDLGH 100
HN H+ V+ C + P L +T + L +A HDL H
Sbjct: 83 HN-AVHAADVTQAMHCYL-----KEPKLANSVTPWDILLSLIAAATHDLDH 127
>2o08_A BH1327 protein; putative HD superfamily hydrolase, structural
genomics, JOIN for structural genomics, JCSG; HET: UNL
PG4 DGI; 1.90A {Bacillus halodurans}
Length = 188
Score = 31.4 bits (71), Expect = 0.20
Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 10/47 (21%)
Query: 53 NRFEHSLGVSYLGGCMVDALVHNTPGLHITAEEKLSVELAGLCHDLG 99
+R++H++GV + A ++ ++K ELA + HD
Sbjct: 18 HRYQHTIGVMETAIDL--AKLYGAD------QQK--AELAAIFHDYA 54
>3qi3_A High affinity CGMP-specific 3',5'-cyclic phosphod 9A; mutation,
glutamine switch, hydrolase-hydrolase inhibitor CO; HET:
PDB; 2.30A {Homo sapiens} PDB: 3qi4_A*
Length = 533
Score = 32.3 bits (73), Expect = 0.21
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Query: 52 HNRFEHSLGVSYLGGCMVDALVHNTPGLHITAEEKLSVELAGLCHDLGH 100
HN F H V+ + M + + + + L + A +CHDL H
Sbjct: 252 HN-FRHCFCVAQMMYSM---VWLCSLQEKFSQTDILILMTAAICHDLDH 296
>3dyn_A High affinity CGMP-specific 3',5'-cyclic phosphod 9A;
phophodiestrase, enzyme mechanism, hydrolase, manganes
binding, phosphoprotein; HET: PCG IBM; 2.10A {Homo
sapiens} SCOP: a.211.1.2 PDB: 3dyl_A* 3dy8_A* 3dyq_A*
3dys_A* 3jsi_A* 3jsw_A* 2yy2_A* 2hd1_A* 3k3e_A* 3k3h_A*
3n3z_A*
Length = 329
Score = 31.3 bits (71), Expect = 0.33
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Query: 52 HNRFEHSLGVSYLGGCMVDALVHNTPGLHITAEEKLSVELAGLCHDLGH 100
HN F H V+ + M + + + + L + A +CHDL H
Sbjct: 75 HN-FRHCFCVAQMMYSM---VWLCSLQEKFSQTDILILMTAAICHDLDH 119
>3itu_A CGMP-dependent 3',5'-cyclic phosphodiesterase; Zn-binding,
all-alpha-helical, alternative splicing, hydrolase,
membrane, polymorphism; HET: IBM; 1.58A {Homo sapiens}
PDB: 3itm_A* 1z1l_A
Length = 345
Score = 31.0 bits (70), Expect = 0.48
Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 52 HNRFEHSLGVSYLGGCMVDALVHNTPGLHITAEEKLSVELAGLCHDLGH 100
HN + H+ VS+ + + ++ E ++ ++ +CHDL H
Sbjct: 82 HN-WMHAFSVSHFCYLL---YKNLELTNYLEDIEIFALFISCMCHDLDH 126
>3v93_A Cyclic nucleotide specific phosphodiesterase; parasite,
phosphodiesterases,, hydrolase; 2.00A {Trypanosoma
cruzi} PDB: 3v94_A*
Length = 345
Score = 30.1 bits (68), Expect = 0.85
Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 3/49 (6%)
Query: 52 HNRFEHSLGVSYLGGCMVDALVHNTPGLHITAEEKLSVELAGLCHDLGH 100
HN H+ V +V A H+T E + A L HD+ H
Sbjct: 99 HN-AIHAADVLQGTFSLVSAAKPLME--HLTPLECKAAAFAALTHDVCH 144
>1tbf_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5A, hydrolase;
HET: VIA; 1.30A {Homo sapiens} SCOP: a.211.1.2 PDB:
1t9s_A* 1xoz_A* 1xp0_A* 2chm_A* 3tge_A* 3tgg_A* 3hc8_A*
3hdz_A* 1t9r_A* 3sie_A* 3shy_A* 3shz_A* 3b2r_A* 2h44_A*
2h42_A* 2h40_A* 1rkp_A* 1udt_A* 1udu_A* 1uho_A* ...
Length = 347
Score = 29.7 bits (67), Expect = 1.2
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 52 HNRFEHSLGVSYLGGCMVDALVHNTPGLHITAEEKLSVELAGLCHDLGH 100
HN + H+ + CM AL +T E L++ +A L HDL H
Sbjct: 101 HN-WRHAFNTAQ---CMFAALKAGKIQNKLTDLEILALLIAALSHDLDH 145
>3ecm_A High affinity CAMP-specific and IBMX-insensitive 3',5'-cyclic
phosphodiesterase 8A...; phosphodiesterase 8A PDE8A
inhibitor selectivity; 1.90A {Homo sapiens} PDB: 3ecn_A*
Length = 338
Score = 29.4 bits (66), Expect = 1.2
Identities = 4/21 (19%), Positives = 11/21 (52%)
Query: 80 HITAEEKLSVELAGLCHDLGH 100
+ ++++ +A HD+ H
Sbjct: 99 TLDPIDEVAALIAATIHDVDH 119
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains,
allosteric regulation hydrolase, membrane; 3.02A {Homo
sapiens}
Length = 691
Score = 29.6 bits (66), Expect = 1.4
Identities = 12/103 (11%), Positives = 31/103 (30%), Gaps = 9/103 (8%)
Query: 4 NHKIFNDSVHGHMKFHPICVAIIDTPQFQRLRNIKQT------STTYLVYPGACHNRFEH 57
+ ++++ F I Y ++ + H
Sbjct: 388 ASFTYTPRSLPEDDTSMAILSMLQDMNFINNYKIDCPTLARFCLMVKKGYRDPPYHNWMH 447
Query: 58 SLGVSYLGGCMVDALVHNTPGLHITAEEKLSVELAGLCHDLGH 100
+ VS+ + + ++ E ++ ++ +CHDL H
Sbjct: 448 AFSVSHFCYLL---YKNLELTNYLEDIEIFALFISCMCHDLDH 487
>2elj_A Transcriptional adapter 2; YDR448W, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Saccharomyces cerevisiae}
Length = 88
Score = 27.4 bits (61), Expect = 1.7
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 150 LIKELIRGGGESLPADKRFLYQIIANKETDIDVDKWDYFLRDGH 193
+ +EL++ GG + R L I K I +D+F
Sbjct: 48 MFRELLKTGGNLSKSACRELLNIDPIKANRI----YDFFQSQNW 87
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle
dysfunction, inhibitor design, allosteric enzyme,
alternative splicing, CGMP binding; HET: WAN; 2.00A
{Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A
2k31_A*
Length = 878
Score = 29.0 bits (64), Expect = 2.2
Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 52 HNRFEHSLGVSYLGGCMVDALVHNTPGLHITAEEKLSVELAGLCHDLGHGPFSHTWEK 109
HN + H+ + L +T E L++ +A L HDL H ++++ +
Sbjct: 616 HN-WRHAFNTAQCMFAA---LKAGKIQNKLTDLEILALLIAALSHDLDHRGVNNSYIQ 669
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 28.8 bits (63), Expect = 2.8
Identities = 16/78 (20%), Positives = 27/78 (34%), Gaps = 7/78 (8%)
Query: 111 LRRFDSHWKHEQGSEEVLDYLIEDNKLGPLFESYNLNLNLIKELIRGGGES-------LP 163
LR F + + +YL KL + NL + IR P
Sbjct: 182 LRDFSLDLEADGQPLTPDEYLTYSLKLKKGTSQKDETFNLPRLCIRKFFPKKKCFVFDRP 241
Query: 164 ADKRFLYQIIANKETDID 181
+R L Q+ ++ ++D
Sbjct: 242 VHRRKLAQLEKLQDEELD 259
>3i7a_A Putative metal-dependent phosphohydrolase; YP_926882.1, STRU
genomics, joint center for structural genomics, JCSG;
2.06A {Shewanella amazonensis SB2B}
Length = 281
Score = 28.2 bits (63), Expect = 3.2
Identities = 15/93 (16%), Positives = 32/93 (34%), Gaps = 10/93 (10%)
Query: 31 FQRLRNI------KQTSTTYLVYPGACHNRF-EHSLGVSYLGGCMVDALVHNTPGLHITA 83
++++I +Q + + S+ V+ ++ PG +
Sbjct: 88 LTQIKSIATSVAMEQLFISTNEMVWEVMDEVWRTSIDVTAAACSLLQIYNKKHPGSGLNY 147
Query: 84 EEKLSVELAGLCHDLGHGPFSHTWEKFLRRFDS 116
+ + LAGL H++G P E F +
Sbjct: 148 DT---LTLAGLVHNIGALPVLTEAEAHPEMFTT 177
>2zad_A Muconate cycloisomerase; muconate lactonizing enzyme (MLE), TM0006,
struct genomics, NPPSFA; HET: 1PE; 1.60A {Thermotoga
maritima} PDB: 3deq_A 3der_A* 3des_A* 3dfy_A
Length = 345
Score = 27.2 bits (61), Expect = 7.2
Identities = 10/52 (19%), Positives = 19/52 (36%), Gaps = 5/52 (9%)
Query: 57 HSLGVSYLGGCMVDALVHNTPGLHITAEEKLS--VELAG---LCHDLGHGPF 103
S G+ + GCM ++ + +H +L L ++ G F
Sbjct: 282 ESSGLKLMIGCMGESSLGINQSVHFALGTGAFEFHDLDSHLMLKEEVFRGKF 333
>1so2_A CGMP-inhibited 3',5'-cyclic phosphodiesterase B; PDE3B
phosphodiesterase, hydrolase; HET: HG9 666; 2.40A {Homo
sapiens} SCOP: a.211.1.2 PDB: 1soj_A*
Length = 420
Score = 27.3 bits (60), Expect = 7.5
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 80 HITAEEKLSVELAGLCHDLGH 100
+I A E +++ +A HD H
Sbjct: 152 NIPALELMALYVAAAMHDYDH 172
>3cse_A Dihydrofolate reductase; protein-ligand complex, oxidoreductase;
HET: NAP N22; 1.60A {Candida glabrata} PDB: 3eej_A*
3eek_A* 3eel_A* 3eem_A* 3qlx_A* 3qly_A* 3qlz_A*
Length = 227
Score = 26.6 bits (59), Expect = 9.3
Identities = 20/106 (18%), Positives = 36/106 (33%), Gaps = 12/106 (11%)
Query: 157 GGGE----SLP-ADKRFLYQIIANKET---DIDVDKWDYFLRDGHQLNLKITFDY----R 204
GGGE S+ AD + +I+ ET +D L N D+
Sbjct: 122 GGGEIYRQSMDLADHWLITKIMPLPETTIPQMDTFLQKQELEQRFYDNSDKLVDFLPSSI 181
Query: 205 RLLSFCTVVKRPTDSGPTIAFRNKEASNIFDMFRVRADLHLRAYQH 250
+L T + + + + K F ++ + + H + H
Sbjct: 182 QLEGRLTSQEWNGELVKGLPVQEKGYQFYFTLYTKKLEHHHHHHHH 227
>3ro6_B Putative chloromuconate cycloisomerase; TIM barrel; 2.20A
{Methylococcus capsulatus} PDB: 3rit_A
Length = 356
Score = 26.8 bits (60), Expect = 9.5
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 5/51 (9%)
Query: 58 SLGVSYLGGCMVDALVHNTPGLHITAEEKLS--VELAG---LCHDLGHGPF 103
+ G+ + GCM ++ + LH + ++L G L D+ G F
Sbjct: 285 TAGIDLMWGCMDESRISIAAALHAALACPATRYLDLDGSFDLARDVAEGGF 335
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.139 0.440
Gapped
Lambda K H
0.267 0.0513 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,719,311
Number of extensions: 278537
Number of successful extensions: 603
Number of sequences better than 10.0: 1
Number of HSP's gapped: 581
Number of HSP's successfully gapped: 52
Length of query: 294
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 201
Effective length of database: 4,105,140
Effective search space: 825133140
Effective search space used: 825133140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.2 bits)