RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13612
(294 letters)
>d2o6ia1 a.211.1.1 (A:1-453) Hypothetical protein EF1143
{Enterococcus faecalis [TaxId: 1351]}
Length = 453
Score = 181 bits (461), Expect = 1e-54
Identities = 69/259 (26%), Positives = 110/259 (42%), Gaps = 27/259 (10%)
Query: 6 KIFNDSVHGHMKF-HPICVAIIDTPQFQRLRNIKQTSTTYLVYPGACHNRFEHSLGVSYL 64
K+F D VH ++ H + + +I++ + QRLR IKQ T+ + GA H+RF HSLGV +
Sbjct: 14 KVFRDPVHNYIHVQHQVILDLINSAEVQRLRRIKQLGTSSFTFHGAEHSRFSHSLGVYEI 73
Query: 65 GGCMVDALVHNTP-----GLHITAEEKLSVELAGLCHDLGHGPFSHTWEKFLRRFDSHWK 119
+ + N +E+L A L HD+GHGP+SHT+E
Sbjct: 74 TRRICEIFQRNYSVERLGENGWNDDERLITLCAALLHDVGHGPYSHTFEHIF-----DTN 128
Query: 120 HEQGSEEVLDYLIEDNKLGPLFESYNLNLNLIKELIRGGGESLPADKRFLYQIIANKETD 179
HE + +++ E L + +I + Q+I++
Sbjct: 129 HEAITVQIITSP-ETEVYQILNRVSADFPEKVASVITKQYP-----NPQVVQMISS---Q 179
Query: 180 IDVDKWDYFLRDGHQLNLKI-TFDYRRLLSFCTVVKRPTDSGPTIAFRNKEASNIFDMFR 238
ID D+ DY LRD + + TFD R+L K IAF + D
Sbjct: 180 IDADRMDYLLRDAYFTGTEYGTFDLTRILRVIRPYKGG------IAFAMNGMHAVEDYIV 233
Query: 239 VRADLHLRAYQHCATKNTE 257
R ++++ Y H ++ E
Sbjct: 234 SRYQMYVQVYFHPVSRGME 252
>d2heka1 a.211.1.1 (A:1-369) Hypothetical protein aq_1910 {Aquifex
aeolicus [TaxId: 63363]}
Length = 369
Score = 156 bits (395), Expect = 8e-46
Identities = 68/246 (27%), Positives = 117/246 (47%), Gaps = 26/246 (10%)
Query: 6 KIFNDSVHGHMKFHPICVAIIDTPQFQRLRNIKQTSTTYLVYPGACHNRFEHSLGVSYLG 65
K F+D ++G ++ + +ID+ FQRLR +KQ YLV+P A H RFEHSLGV ++
Sbjct: 3 KEFSDPLYGFVRVGEAGLRLIDSFPFQRLRYVKQLGLAYLVFPSAQHTRFEHSLGVYHIT 62
Query: 66 GCMVDALVHNTPGLHITAEEKLSVELAGLCHDLGHGPFSHTWEKFLRRFDSHWKHEQGSE 125
+ ++L EK V+LAGL HDLGH PFSHT E E+ E
Sbjct: 63 ERICESLKVK---------EKELVKLAGLLHDLGHPPFSHTTEVL-------LPRERSHE 106
Query: 126 EVLDYLIEDNKLGPLFESYNLNLNLIKELIRGGGESLPADKRFLYQIIANKETDIDVDKW 185
+ + +I++ ++ + + + ++ + + G+ +++ L +II + D+
Sbjct: 107 DFTERVIKETEIYEILKQDYSHEDIERLVRITLGKPEDEEEKLLSEIITGE---FGSDRM 163
Query: 186 DYFLRDGHQLNLKITF-DYRRLLSFCTVVKRPTDSGPTIAFRNKEASNIFDMFRVRADLH 244
DY RD + + F DY RL+S V + + + + R ++
Sbjct: 164 DYLRRDAYFCGVSYGFFDYDRLISTLRVYEN------KVVVDESGLRALENFLISRYFMY 217
Query: 245 LRAYQH 250
++ Y H
Sbjct: 218 VQVYFH 223
>d1taza_ a.211.1.2 (A:) Catalytic domain of cyclic nucleotide
phosphodiesterase 1b, PDE1B {Human (Homo sapiens)
[TaxId: 9606]}
Length = 357
Score = 30.0 bits (67), Expect = 0.31
Identities = 16/77 (20%), Positives = 25/77 (32%), Gaps = 7/77 (9%)
Query: 52 HNRFEHSLGVSYLGGCMVDALVHNTPGLHITAEEKLSVELAGLCHDLGHGPFSHTWEKFL 111
HN H+ V+ C L+ ++ E L++ A HD H + F
Sbjct: 78 HN-QIHAADVTQTVHCF---LLRTGMVHCLSEIELLAIIFAAAIHDYEHTGTT---NSFH 130
Query: 112 RRFDSHWKHEQGSEEVL 128
+ S VL
Sbjct: 131 IQTKSECAIVYNDRSVL 147
>d1so2a_ a.211.1.2 (A:) cGMP-inhibited 3',5'-cyclic
phosphodiesterase B, pde3b {Human (Homo sapiens) [TaxId:
9606]}
Length = 415
Score = 27.0 bits (59), Expect = 2.9
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 80 HITAEEKLSVELAGLCHDLGH 100
+I A E +++ +A HD H
Sbjct: 147 NIPALELMALYVAAAMHDYDH 167
>d1tbfa_ a.211.1.2 (A:) cGMP-specific 3',5'-cyclic phosphodiesterase
pde5a1-Ibmx {Human (Homo sapiens) [TaxId: 9606]}
Length = 326
Score = 26.5 bits (58), Expect = 3.5
Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 7/77 (9%)
Query: 52 HNRFEHSLGVSYLGGCMVDALVHNTPGLHITAEEKLSVELAGLCHDLGHGPFSHTWEKFL 111
HN + H+ + CM AL +T E L++ +A L HDL H S +FL
Sbjct: 80 HN-WRHAFNTAQ---CMFAALKAGKIQNKLTDLEILALLIAALSHDLDHPGVS---NQFL 132
Query: 112 RRFDSHWKHEQGSEEVL 128
+S E VL
Sbjct: 133 INTNSELALMYNDESVL 149
>d3dy8a1 a.211.1.2 (A:182-505) High-affinity cGMP-specific
3',5'-cyclic phosphodiesterase 9A, PDE9A {Human (Homo
sapiens) [TaxId: 9606]}
Length = 324
Score = 26.5 bits (58), Expect = 3.5
Identities = 14/77 (18%), Positives = 26/77 (33%), Gaps = 7/77 (9%)
Query: 52 HNRFEHSLGVSYLGGCMVDALVHNTPGLHITAEEKLSVELAGLCHDLGHGPFSHTWEKFL 111
HN F H V+ + M + + + + L + A +CHDL H ++ +
Sbjct: 71 HN-FRHCFCVAQMMYSM---VWLCSLQEKFSQTDILILMTAAICHDLDHPGYN---NTYQ 123
Query: 112 RRFDSHWKHEQGSEEVL 128
+ L
Sbjct: 124 INARTELAVRYNDISPL 140
>d3dtoa1 a.211.1.1 (A:2-213) Uncharacterized protein BH2835
{Bacillus halodurans [TaxId: 86665]}
Length = 212
Score = 25.4 bits (55), Expect = 6.7
Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 3/59 (5%)
Query: 78 GLHITAEEKLS---VELAGLCHDLGHGPFSHTWEKFLRRFDSHWKHEQGSEEVLDYLIE 133
I +EK+ V++A L HDL E ++ + + +D+ ++
Sbjct: 36 AKAIGEQEKVDVFVVQIAALFHDLIDDKLVDDPETAKQQLIDWMEAAGVPSQKIDHTMD 94
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.139 0.440
Gapped
Lambda K H
0.267 0.0552 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,176,106
Number of extensions: 55466
Number of successful extensions: 119
Number of sequences better than 10.0: 1
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 12
Length of query: 294
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 209
Effective length of database: 1,240,546
Effective search space: 259274114
Effective search space used: 259274114
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.2 bits)