BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13613
(112 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ET6|B Chain B, The Crystal Structure Of The Catalytic Domain Of A
Eukaryotic Guanylate Cyclase
Length = 190
Score = 72.0 bits (175), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 47/68 (69%), Gaps = 2/68 (2%)
Query: 1 MPRYCLFGDTVNTASRMESTSEPMKIHISENTKDLIPAE--YRVSQRGEILIKGKGSMKT 58
MPR+ LFGDTVNTASRMES E +IHISE + ++ + + +RG I +KGKG+M+T
Sbjct: 122 MPRFXLFGDTVNTASRMESHGEAGQIHISEACYXCLRSKERFEIRERGNITVKGKGTMRT 181
Query: 59 YWLEQHDR 66
Y L +R
Sbjct: 182 YLLSPLER 189
>pdb|3ET6|A Chain A, The Crystal Structure Of The Catalytic Domain Of A
Eukaryotic Guanylate Cyclase
Length = 190
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 47/68 (69%), Gaps = 2/68 (2%)
Query: 1 MPRYCLFGDTVNTASRMESTSEPMKIHISENTKDLIPAE--YRVSQRGEILIKGKGSMKT 58
MPR+ LFGDTVNTASRMES E +IHISE + ++ + + +RG I +KGKG+M+T
Sbjct: 122 MPRFXLFGDTVNTASRMESHGEAGQIHISEACYCCLRSKERFEIRERGNITVKGKGTMRT 181
Query: 59 YWLEQHDR 66
Y L +R
Sbjct: 182 YLLSPLER 189
>pdb|1YK9|A Chain A, Crystal Structure Of A Mutant Form Of The Mycobacterial
Adenylyl Cyclase Rv1625c
Length = 204
Score = 58.9 bits (141), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 40/59 (67%)
Query: 3 RYCLFGDTVNTASRMESTSEPMKIHISENTKDLIPAEYRVSQRGEILIKGKGSMKTYWL 61
RYC++GD VN ASRMEST +I + + + + ++ + +RG I +KGKG M+T++L
Sbjct: 124 RYCVWGDAVNVASRMESTDSVGQIQVPDEVYERLKDDFVLRERGHINVKGKGVMRTWYL 182
>pdb|1AB8|A Chain A, Rat Type Ii Adenylyl Cyclase C2 DomainFORSKOLIN COMPLEX
pdb|1AB8|B Chain B, Rat Type Ii Adenylyl Cyclase C2 DomainFORSKOLIN COMPLEX
Length = 220
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 2 PRYCLFGDTVNTASRMESTSEPMKIHISENTKDLIPA-EYRVSQRGEILIKGKGSMKTYW 60
P+Y ++G+TVN ASRM+ST KI ++E T ++ Y + RG I +KGKG +KTY+
Sbjct: 145 PQYDIWGNTVNVASRMDSTGVLDKIQVTEETSLILQTLGYTCTCRGIINVKGKGDLKTYF 204
Query: 61 LEQHDRRA 68
+ R+
Sbjct: 205 VNTEMSRS 212
>pdb|1CUL|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg
Length = 208
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Query: 2 PRYCLFGDTVNTASRMESTSEPMKIHISENTKDLIPA-EYRVSQRGEILIKGKGSMKTYW 60
P+Y ++G+TVN ASRM+ST KI ++E T ++ Y + RG I +KGKG +KTY+
Sbjct: 142 PQYDIWGNTVNVASRMDSTGVLDKIQVTEETSLILQTLGYTCTCRGIINVKGKGDLKTYF 201
Query: 61 L 61
+
Sbjct: 202 V 202
>pdb|1AZS|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase
pdb|1CJK|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn
pdb|1CJT|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mn, And Mg
pdb|1CJU|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp And Mg
pdb|1CJV|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mg, And Zn
pdb|1CS4|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And
Mg
pdb|1TL7|B Chain B, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With 2'(3')-O-(N-
Methylanthraniloyl)-Guanosine 5'-Triphosphate And Mn
pdb|1U0H|B Chain B, Structural Basis For The Inhibition Of Mammalian Adenylyl
Cyclase By Mant-gtp
pdb|2GVD|B Chain B, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With Tnp-Atp And Mn
pdb|2GVZ|B Chain B, Crystal Structure Of Complex Of Gs- With The Catalytic
Domains Of Mammalian Adenylyl Cyclase: Complex With
Mant- Atp And Mn
pdb|3C14|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Ca
pdb|3C15|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Mg
pdb|3C16|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Adenosine-5'-Triphosphate And Ca
pdb|3G82|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Mant-Itp And Mn
pdb|3MAA|B Chain B, Complex Of Gs-alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5-o-(l-thiophosphate) And Low Ca Concentration
Length = 212
Score = 53.5 bits (127), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Query: 2 PRYCLFGDTVNTASRMESTSEPMKIHISENTKDLIPA-EYRVSQRGEILIKGKGSMKTYW 60
P+Y ++G+TVN ASRM+ST KI ++E T ++ Y + RG I +KGKG +KTY+
Sbjct: 146 PQYDIWGNTVNVASRMDSTGVLDKIQVTEETSLILQTLGYTCTCRGIINVKGKGDLKTYF 205
Query: 61 L 61
+
Sbjct: 206 V 206
>pdb|2WZ1|A Chain A, Structure Of The Catalytic Domain Of Human Soluble
Guanylate Cyclase 1 Beta 3.
pdb|2WZ1|B Chain B, Structure Of The Catalytic Domain Of Human Soluble
Guanylate Cyclase 1 Beta 3
Length = 219
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
Query: 1 MPRYCLFGDTVNTASRMESTSEPMKIHISENTKDLIPA------EYRVSQRGEILIKGKG 54
MPRYCLFG+TVN SR E+T E KI++SE T + + ++ + RG + +KGK
Sbjct: 130 MPRYCLFGNTVNLTSRTETTGEKGKINVSEYTYRCLMSPENSDPQFHLEHRGPVSMKGKK 189
Query: 55 SMKTYWL 61
W
Sbjct: 190 EPMQVWF 196
>pdb|3UVJ|B Chain B, Crystal Structure Of The Catalytic Domain Of The
Heterodimeric Human Soluble Guanylate Cyclase 1.
pdb|3UVJ|D Chain D, Crystal Structure Of The Catalytic Domain Of The
Heterodimeric Human Soluble Guanylate Cyclase 1
Length = 220
Score = 48.5 bits (114), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 6/67 (8%)
Query: 1 MPRYCLFGDTVNTASRMESTSEPMKIHISENTKDLIPA------EYRVSQRGEILIKGKG 54
MPRY LFG+TVN SR E+T E KI++SE T + + ++ + RG + +KGK
Sbjct: 131 MPRYSLFGNTVNLTSRTETTGEKGKINVSEYTYRCLMSPENSDPQFHLEHRGPVSMKGKK 190
Query: 55 SMKTYWL 61
W
Sbjct: 191 EPMQVWF 197
>pdb|3UVJ|A Chain A, Crystal Structure Of The Catalytic Domain Of The
Heterodimeric Human Soluble Guanylate Cyclase 1.
pdb|3UVJ|C Chain C, Crystal Structure Of The Catalytic Domain Of The
Heterodimeric Human Soluble Guanylate Cyclase 1
Length = 225
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 25/36 (69%)
Query: 1 MPRYCLFGDTVNTASRMESTSEPMKIHISENTKDLI 36
MPRYCLFG+ V A++ ES S P KI++S T L+
Sbjct: 126 MPRYCLFGNNVTLANKFESCSVPRKINVSPTTYRLL 161
>pdb|3R5G|A Chain A, Crystal Structure Of The Adenylyl Cyclase Cyab From P.
Aeruginosa
pdb|3R5G|B Chain B, Crystal Structure Of The Adenylyl Cyclase Cyab From P.
Aeruginosa
Length = 198
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 27/49 (55%)
Query: 4 YCLFGDTVNTASRMESTSEPMKIHISENTKDLIPAEYRVSQRGEILIKG 52
Y + G VN ASR+ES SE +I IS T LI +G+I +KG
Sbjct: 132 YTIIGREVNLASRLESASEAGEILISHETYSLIKDVIMCRDKGQIAVKG 180
>pdb|3MR7|A Chain A, Crystal Structure Of AdenylateGUANYLATE CYCLASEHYDROLASE
FROM Silicibacter Pomeroyi
pdb|3MR7|B Chain B, Crystal Structure Of AdenylateGUANYLATE CYCLASEHYDROLASE
FROM Silicibacter Pomeroyi
pdb|3MR7|C Chain C, Crystal Structure Of AdenylateGUANYLATE CYCLASEHYDROLASE
FROM Silicibacter Pomeroyi
Length = 189
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 6 LFGDTVNTASRMESTSEPMKIHISE 30
+FGD VN A+R+E+ SEP I +S+
Sbjct: 112 IFGDAVNVAARLEAISEPGAICVSD 136
>pdb|2GAN|A Chain A, Crystal Structure Of A Putative Acetyltransferase From
Pyrococcus Horikoshii, Northeast Structural Genomics
Target Jr32.
pdb|2GAN|B Chain B, Crystal Structure Of A Putative Acetyltransferase From
Pyrococcus Horikoshii, Northeast Structural Genomics
Target Jr32
Length = 190
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 17/33 (51%)
Query: 80 YPELEWEKYADNMKDLVEERRVYSPNLKLKLKQ 112
YP LEW K N D R VY P LK +L Q
Sbjct: 32 YPALEWVKRKPNPNDFNGFREVYEPFLKFRLSQ 64
>pdb|3ZGB|A Chain A, Greater Efficiency Of Photosynthetic Carbon Fixation Due
To Single Amino Acid Substitution
pdb|3ZGB|B Chain B, Greater Efficiency Of Photosynthetic Carbon Fixation Due
To Single Amino Acid Substitution
Length = 972
Score = 28.5 bits (62), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 31/83 (37%), Gaps = 14/83 (16%)
Query: 23 PMKIHISENTKDLIPAEYRVSQRGEILIKGKGSMKTYWLEQHDRRAPLSRLCTV------ 76
P + I D I RV+ +GE++ + G E+H L R C
Sbjct: 651 PTHLAILSQPPDTIHGSLRVTVQGEVIEQSFG-------EEHLCFRTLQRFCAATLEHGM 703
Query: 77 -PPSYPELEWEKYADNMKDLVEE 98
PP P EW + D M + E
Sbjct: 704 NPPISPRPEWRELMDQMAVVATE 726
>pdb|1AZS|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase
Length = 220
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Query: 6 LFGDTVNTASRMESTSEPMKIHISENTKDLIPAEYRVSQRGEILIKGKGSMKTYWLEQHD 65
++ + V A+ ME+ + +IHI++ T + +Y V G G + +L++H
Sbjct: 151 VWSNDVTLANHMEAGGKAGRIHITKATLSYLNGDYEVE-------PGCGGERNAYLKEHS 203
Query: 66 RRAPLSRLCT 75
L CT
Sbjct: 204 IETFLILRCT 213
>pdb|1CJK|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn
pdb|1CJT|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mn, And Mg
pdb|1CJU|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp And Mg
pdb|1CJV|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mg, And Zn
pdb|1CUL|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg
pdb|1TL7|A Chain A, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With 2'(3')-O-(N-
Methylanthraniloyl)-Guanosine 5'-Triphosphate And Mn
Length = 217
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Query: 6 LFGDTVNTASRMESTSEPMKIHISENTKDLIPAEYRVSQRGEILIKGKGSMKTYWLEQHD 65
++ + V A+ ME+ + +IHI++ T + +Y V G G + +L++H
Sbjct: 143 VWSNDVTLANHMEAGGKAGRIHITKATLSYLNGDYEVE-------PGCGGERNAYLKEHS 195
Query: 66 RRAPLSRLCT 75
L CT
Sbjct: 196 IETFLILRCT 205
>pdb|1CS4|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And
Mg
pdb|1U0H|A Chain A, Structural Basis For The Inhibition Of Mammalian Adenylyl
Cyclase By Mant-gtp
pdb|2GVD|A Chain A, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With Tnp-Atp And Mn
pdb|2GVZ|A Chain A, Crystal Structure Of Complex Of Gs- With The Catalytic
Domains Of Mammalian Adenylyl Cyclase: Complex With
Mant- Atp And Mn
pdb|3C14|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Ca
pdb|3C15|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Mg
pdb|3C16|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Adenosine-5'-Triphosphate And Ca
pdb|3G82|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Mant-Itp And Mn
pdb|3MAA|A Chain A, Complex Of Gs-alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5-o-(l-thiophosphate) And Low Ca Concentration
Length = 225
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Query: 6 LFGDTVNTASRMESTSEPMKIHISENTKDLIPAEYRVSQRGEILIKGKGSMKTYWLEQHD 65
++ + V A+ ME+ + +IHI++ T + +Y V G G + +L++H
Sbjct: 151 VWSNDVTLANHMEAGGKAGRIHITKATLSYLNGDYEVE-------PGCGGERNAYLKEHS 203
Query: 66 RRAPLSRLCT 75
L CT
Sbjct: 204 IETFLILRCT 213
>pdb|3ZGE|A Chain A, Greater Efficiency Of Photosynthetic Carbon Fixation Due
To Single Amino Acid Substitution
pdb|3ZGE|B Chain B, Greater Efficiency Of Photosynthetic Carbon Fixation Due
To Single Amino Acid Substitution
Length = 990
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 31/83 (37%), Gaps = 14/83 (16%)
Query: 23 PMKIHISENTKDLIPAEYRVSQRGEILIKGKGSMKTYWLEQHDRRAPLSRLCTV------ 76
P + + D I RV+ +GE++ + G E+H L R C
Sbjct: 669 PTHLALLSQPPDTINGSLRVTVQGEVIEQSFG-------EEHLCFRTLQRFCAATLEHGM 721
Query: 77 -PPSYPELEWEKYADNMKDLVEE 98
PP P EW + D M + E
Sbjct: 722 NPPISPRPEWRELMDQMAVVATE 744
>pdb|1QL6|A Chain A, The Catalytic Mechanism Of Phosphorylase Kinase Probed By
Mutational Studies
Length = 298
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 84 EWEKYADNMKDLVEERRVYSPN 105
EW+ Y+D +KDLV V P
Sbjct: 252 EWDDYSDTVKDLVSRFLVVQPQ 273
>pdb|1PHK|A Chain A, Two Structures Of The Catalytic Domain Of Phosphorylase,
Kinase: An Active Protein Kinase Complexed With
Nucleotide, Substrate-Analogue And Product
Length = 298
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 84 EWEKYADNMKDLVEERRVYSPN 105
EW+ Y+D +KDLV V P
Sbjct: 252 EWDDYSDTVKDLVSRFLVVQPQ 273
>pdb|2PHK|A Chain A, The Crystal Structure Of A Phosphorylase Kinase Peptide
Substrate Complex: Kinase Substrate Recognition
Length = 277
Score = 25.8 bits (55), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 84 EWEKYADNMKDLVEERRVYSP 104
EW+ Y+D +KDLV V P
Sbjct: 239 EWDDYSDTVKDLVSRFLVVQP 259
>pdb|3Q7V|B Chain B, Beta-Lactam-Sensor Domain Of Blar1 (Apo) From
Staphylococcus Aureus With Carboxylated Lys392
Length = 252
Score = 25.4 bits (54), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 30 ENTKDLIPAEYRVSQRGEILIKGK--GSMKTYWLEQHDRRAPLSRLCTV 76
E D IP Y +Q ++ K GS K+YW+E + + L ++
Sbjct: 112 ERISDQIPKNYTATQLKQLNYGNKNLGSYKSYWMEDSLKISNLEQVIVF 160
>pdb|3Q7Z|A Chain A, Cbap-Acylated Blar1 Sensor Domain From Staphylococcus
Aureus
pdb|3Q7Z|B Chain B, Cbap-Acylated Blar1 Sensor Domain From Staphylococcus
Aureus
pdb|3Q81|A Chain A, Imipenem Acylated Blar1 Sensor Domain From Staphylococcus
Aureus
pdb|3Q81|B Chain B, Imipenem Acylated Blar1 Sensor Domain From Staphylococcus
Aureus
pdb|3Q82|A Chain A, Meropenem Acylated Blar1 Sensor Domain From Staphylococcus
Aureus
pdb|3Q82|B Chain B, Meropenem Acylated Blar1 Sensor Domain From Staphylococcus
Aureus
pdb|3Q7V|A Chain A, Beta-Lactam-Sensor Domain Of Blar1 (Apo) From
Staphylococcus Aureus With Carboxylated Lys392
Length = 252
Score = 25.4 bits (54), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 30 ENTKDLIPAEYRVSQRGEILIKGK--GSMKTYWLEQHDRRAPLSRLCTV 76
E D IP Y +Q ++ K GS K+YW+E + + L ++
Sbjct: 112 ERISDQIPKNYTATQLKQLNYGNKNLGSYKSYWMEDSLKISNLEQVIVF 160
>pdb|3HX4|A Chain A, Crystal Structure Of Cdpk1 Of Toxoplasma Gondii,
Tgme49_101440, In Presence Of Calcium
Length = 508
Score = 25.4 bits (54), Expect = 7.7, Method: Composition-based stats.
Identities = 7/28 (25%), Positives = 19/28 (67%)
Query: 84 EWEKYADNMKDLVEERRVYSPNLKLKLK 111
+W+K +++ KDL+ + Y P++++ +
Sbjct: 274 QWKKVSESAKDLIRKMLTYVPSMRISAR 301
>pdb|3KU2|A Chain A, Crystal Structure Of Inactivated Form Of Cdpk1 From
Toxoplasma Gondii, Tgme49.101440
Length = 507
Score = 25.4 bits (54), Expect = 7.8, Method: Composition-based stats.
Identities = 7/28 (25%), Positives = 19/28 (67%)
Query: 84 EWEKYADNMKDLVEERRVYSPNLKLKLK 111
+W+K +++ KDL+ + Y P++++ +
Sbjct: 273 QWKKVSESAKDLIRKMLTYVPSMRISAR 300
>pdb|3UY6|A Chain A, Blar1 Sensor Domain From Staphylococcus Aureus With N439v
Mutation
pdb|3UY6|B Chain B, Blar1 Sensor Domain From Staphylococcus Aureus With N439v
Mutation
Length = 252
Score = 25.4 bits (54), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 30 ENTKDLIPAEYRVSQRGEILIKGK--GSMKTYWLEQHDRRAPLSRLCTV 76
E D IP Y +Q ++ K GS K+YW+E + + L ++
Sbjct: 112 ERISDQIPKNYTATQLKQLNYGNKNLGSYKSYWMEDSLKISNLEQVIVF 160
>pdb|1XA1|A Chain A, Crystal Structure Of The Sensor Domain Of Blar1 From
Staphylococcus Aureus In Its Apo Form
pdb|1XA1|B Chain B, Crystal Structure Of The Sensor Domain Of Blar1 From
Staphylococcus Aureus In Its Apo Form
pdb|1XA1|C Chain C, Crystal Structure Of The Sensor Domain Of Blar1 From
Staphylococcus Aureus In Its Apo Form
pdb|1XA1|D Chain D, Crystal Structure Of The Sensor Domain Of Blar1 From
Staphylococcus Aureus In Its Apo Form
pdb|1XKZ|A Chain A, Crystal Structure Of The Acylated Beta-Lactam Sensor
Domain Of Blar1 From S. Aureus
pdb|1XKZ|B Chain B, Crystal Structure Of The Acylated Beta-Lactam Sensor
Domain Of Blar1 From S. Aureus
pdb|1XKZ|C Chain C, Crystal Structure Of The Acylated Beta-Lactam Sensor
Domain Of Blar1 From S. Aureus
pdb|1XKZ|D Chain D, Crystal Structure Of The Acylated Beta-Lactam Sensor
Domain Of Blar1 From S. Aureus
Length = 255
Score = 25.4 bits (54), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 30 ENTKDLIPAEYRVSQRGEILIKGK--GSMKTYWLEQHDRRAPLSRLCTV 76
E D IP Y +Q ++ K GS K+YW+E + + L ++
Sbjct: 113 ERISDQIPKNYTATQLKQLNYGNKNLGSYKSYWMEDSLKISNLEQVIVF 161
>pdb|3DFA|A Chain A, Crystal Structure Of Kinase Domain Of Calcium-dependent
Protein Kinase Cgd3_920 From Cryptosporidium Parvum
Length = 286
Score = 25.4 bits (54), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 11/43 (25%), Positives = 23/43 (53%)
Query: 70 LSRLCTVPPSYPELEWEKYADNMKDLVEERRVYSPNLKLKLKQ 112
L R+ T ++ +W +D+ KDL+ + + P+L++ Q
Sbjct: 231 LKRVETGKYAFDLPQWRTISDDAKDLIRKMLTFHPSLRITATQ 273
>pdb|3IGO|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cdpk1,
Cgd3_920
pdb|3MWU|A Chain A, Activated Calcium-Dependent Protein Kinase 1 From
Cryptosporidium Parvum (Cpcdpk1) In Complex With Bumped
Kinase Inhibitor Rm-1-95
pdb|3NCG|A Chain A, Activated Calcium-Dependent Protein Kinase 1 From
Cryptosporidium Parvum (Cpcdpk1) In Complex With Bumped
Kinase Inhibitor Nm-Pp1
Length = 486
Score = 25.4 bits (54), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 11/43 (25%), Positives = 23/43 (53%)
Query: 70 LSRLCTVPPSYPELEWEKYADNMKDLVEERRVYSPNLKLKLKQ 112
L R+ T ++ +W +D+ KDL+ + + P+L++ Q
Sbjct: 231 LKRVETGKYAFDLPQWRTISDDAKDLIRKMLTFHPSLRITATQ 273
>pdb|2WEI|A Chain A, Crystal Structure Of The Kinase Domain Of Cryptosporidium
Parvum Calcium Dependent Protein Kinase In Complex With
3- Mb-Pp1
Length = 287
Score = 25.4 bits (54), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 11/43 (25%), Positives = 23/43 (53%)
Query: 70 LSRLCTVPPSYPELEWEKYADNMKDLVEERRVYSPNLKLKLKQ 112
L R+ T ++ +W +D+ KDL+ + + P+L++ Q
Sbjct: 231 LKRVETGKYAFDLPQWRTISDDAKDLIRKMLTFHPSLRITATQ 273
>pdb|3AHR|A Chain A, Inactive Human Ero1
Length = 465
Score = 25.4 bits (54), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 23/105 (21%), Positives = 43/105 (40%), Gaps = 12/105 (11%)
Query: 1 MPRYCLFGDTVNTASRMESTSEPMKIHISENTKDLI-PAEYRVSQRGEILIKGKGSMKTY 59
+ R C F + ++ R ++ +P + S+ D I A Y+ S+ LI+
Sbjct: 78 LKRPCPFWNDISQCGRRDAAVKPAQ---SDEVPDGIKSASYKYSEEANNLIEE------- 127
Query: 60 WLEQHDRRAPLSRLCTVPPSYPELEWEKYADNMKDLVEERRVYSP 104
EQ +R + + L+W K+ D+ + E + SP
Sbjct: 128 -CEQAERLGAVDESLSEETQKAVLQWTKHDDSSDNFAEADDIQSP 171
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,441,054
Number of Sequences: 62578
Number of extensions: 129338
Number of successful extensions: 407
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 378
Number of HSP's gapped (non-prelim): 37
length of query: 112
length of database: 14,973,337
effective HSP length: 76
effective length of query: 36
effective length of database: 10,217,409
effective search space: 367826724
effective search space used: 367826724
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)