Query psy13613
Match_columns 112
No_of_seqs 143 out of 1186
Neff 7.7
Searched_HMMs 46136
Date Fri Aug 16 15:41:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13613.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13613hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3619|consensus 99.7 1.1E-16 2.5E-21 132.8 5.5 62 1-62 779-841 (867)
2 KOG4171|consensus 99.6 1.1E-15 2.4E-20 123.6 6.2 67 1-67 555-623 (671)
3 PF00211 Guanylate_cyc: Adenyl 99.5 2.3E-14 4.9E-19 99.5 6.2 63 1-63 120-184 (184)
4 KOG3618|consensus 99.4 2.2E-13 4.8E-18 111.9 5.8 65 3-67 1210-1274(1318)
5 KOG1023|consensus 99.3 6E-12 1.3E-16 100.0 5.4 66 1-67 411-478 (484)
6 COG2114 CyaA Adenylate cyclase 99.3 7.1E-12 1.5E-16 90.8 5.2 62 4-65 154-217 (227)
7 cd07302 CHD cyclase homology d 99.1 1.3E-10 2.9E-15 78.7 6.4 59 2-60 116-176 (177)
8 smart00044 CYCc Adenylyl- / gu 98.5 7.6E-08 1.6E-12 67.4 3.1 37 2-38 151-187 (194)
9 KOG3618|consensus 98.3 1.1E-06 2.4E-11 73.3 4.8 66 2-67 453-530 (1318)
10 KOG3619|consensus 98.2 1.4E-06 3.1E-11 73.4 3.4 62 3-64 226-290 (867)
11 PF13174 TPR_6: Tetratricopept 41.5 36 0.00079 15.7 2.4 20 82-101 13-32 (33)
12 PF03106 WRKY: WRKY DNA -bindi 30.3 97 0.0021 17.7 3.2 28 36-63 1-28 (60)
13 PF07719 TPR_2: Tetratricopept 21.7 1E+02 0.0022 14.1 2.5 21 81-101 13-33 (34)
No 1
>KOG3619|consensus
Probab=99.65 E-value=1.1e-16 Score=132.80 Aligned_cols=62 Identities=45% Similarity=0.805 Sum_probs=60.3
Q ss_pred CCcccccCchHHHHHHHhccCCCCeEEECHHHHhhccC-cceEEEcceEEecCcCceEEEEEe
Q psy13613 1 MPRYCLFGDTVNTASRMESTSEPMKIHISENTKDLIPA-EYRVSQRGEILIKGKGSMKTYWLE 62 (112)
Q Consensus 1 ~~~y~v~Gd~VNiAsRLes~a~~~~I~vS~~t~~~l~~-~~~~~~~~~~~lkG~~~~~~~~l~ 62 (112)
+||||+||+|||+||||+|.+.+|+|+||++|+..|.. +|.|..+|.+.+|||+++.||++.
T Consensus 779 KPqYDIWGNTVNvASRMdSTGv~g~IQVTEEt~~iL~~~gy~~~~RG~i~VKGkGel~Tyfl~ 841 (867)
T KOG3619|consen 779 KPQYDIWGNTVNVASRMDSTGVPGRIQVTEETANILQGLGYRFECRGVINVKGKGELETYFLC 841 (867)
T ss_pred CCCccccccchhhhhcccccCCCCeEEecHHHHHHHhcCCeeEEecceEEEecccceeEEEec
Confidence 79999999999999999999999999999999999977 899999999999999999999998
No 2
>KOG4171|consensus
Probab=99.60 E-value=1.1e-15 Score=123.60 Aligned_cols=67 Identities=52% Similarity=0.839 Sum_probs=62.6
Q ss_pred CCcccccCchHHHHHHHhccCCCCeEEECHHHHhhccC--cceEEEcceEEecCcCceEEEEEeeeCCC
Q psy13613 1 MPRYCLFGDTVNTASRMESTSEPMKIHISENTKDLIPA--EYRVSQRGEILIKGKGSMKTYWLEQHDRR 67 (112)
Q Consensus 1 ~~~y~v~Gd~VNiAsRLes~a~~~~I~vS~~t~~~l~~--~~~~~~~~~~~lkG~~~~~~~~l~~~~~~ 67 (112)
||+|++|||+||+||||||.+.|+.|+||+.|++.+.. .|.|.++|.+.+||++...+|+|......
T Consensus 555 mPRYCLFGdTVn~AsrmES~s~p~KI~vS~~T~~~l~~~~~f~f~pRg~v~vk~kg~m~tyFL~~~~~~ 623 (671)
T KOG4171|consen 555 MPRYCLFGDTVNLASRMESSSVPGKINVSPTTYRKLKKQGSFEFEPRGRVEVKGKGPMETYFLERSLGP 623 (671)
T ss_pred ccceeecCCchhhhhhhhcCCCCceEEeCHHHHHHHHhCCCceeeecCccccCCCCceEEEEEEecCCC
Confidence 89999999999999999999999999999999999865 59999999999999999999999876554
No 3
>PF00211 Guanylate_cyc: Adenylate and Guanylate cyclase catalytic domain; InterPro: IPR001054 Guanylate cyclases (4.6.1.2 from EC) catalyse the formation of cyclic GMP (cGMP) from GTP. cGMP acts as an intracellular messenger, activating cGMP-dependent kinases and regulating cGMP-sensitive ion channels. The role of cGMP as a second messenger in vascular smooth muscle relaxation and retinal photo-transduction is well established. Guanylate cyclase is found both in the soluble and particulate fractions of eukaryotic cells. The soluble and plasma membrane-bound forms differ in structure, regulation and other properties [, , , ]. Most currently known plasma membrane-bound forms are receptors for small polypeptides. The soluble forms of guanylate cyclase are cytoplasmic heterodimers having alpha and beta subunits. In all characterised eukaryote guanylyl- and adenylyl cyclases, cyclic nucleotide synthesis is carried out by the conserved class III cyclase domain. ; GO: 0016849 phosphorus-oxygen lyase activity, 0009190 cyclic nucleotide biosynthetic process, 0035556 intracellular signal transduction; PDB: 3UVJ_A 1FX4_A 1WC4_B 2BW7_D 1WC1_A 1WC0_A 1WC3_A 1WC5_A 1WC6_A 3ET6_B ....
Probab=99.52 E-value=2.3e-14 Score=99.49 Aligned_cols=63 Identities=40% Similarity=0.692 Sum_probs=58.9
Q ss_pred CCcccccCchHHHHHHHhccCCCCeEEECHHHHhhcc--CcceEEEcceEEecCcCceEEEEEee
Q psy13613 1 MPRYCLFGDTVNTASRMESTSEPMKIHISENTKDLIP--AEYRVSQRGEILIKGKGSMKTYWLEQ 63 (112)
Q Consensus 1 ~~~y~v~Gd~VNiAsRLes~a~~~~I~vS~~t~~~l~--~~~~~~~~~~~~lkG~~~~~~~~l~~ 63 (112)
+++|++||++||+|+||++.+++++|+||+++++.+. ..|.++++|.+.+||++.+.+|+|.+
T Consensus 120 ~~~~~v~G~~vn~Aarl~~~a~~~~i~vs~~v~~~l~~~~~~~~~~~g~~~lkG~~~~~~y~~~~ 184 (184)
T PF00211_consen 120 RPEYDVFGDAVNIAARLESLAPPGQILVSEEVYDALNESDQFRFEELGRVELKGKGPVQTYQLNG 184 (184)
T ss_dssp SEEEEEESHHHHHHHHHHHTSSTTSEEEEHHHHHHHTTHTTEEEEEEEEEEETTSSEEEEEEEE-
T ss_pred ccceeeeehhhhhhHHHHHhhcccccccCHHHHHHhcccCceEEEEeeeEEEecCCCcEEEEEEC
Confidence 4789999999999999999999999999999999999 79999999999999988889998863
No 4
>KOG3618|consensus
Probab=99.42 E-value=2.2e-13 Score=111.88 Aligned_cols=65 Identities=38% Similarity=0.625 Sum_probs=60.7
Q ss_pred cccccCchHHHHHHHhccCCCCeEEECHHHHhhccCcceEEEcceEEecCcCceEEEEEeeeCCC
Q psy13613 3 RYCLFGDTVNTASRMESTSEPMKIHISENTKDLIPAEYRVSQRGEILIKGKGSMKTYWLEQHDRR 67 (112)
Q Consensus 3 ~y~v~Gd~VNiAsRLes~a~~~~I~vS~~t~~~l~~~~~~~~~~~~~lkG~~~~~~~~l~~~~~~ 67 (112)
.||+|||+||+||||-+.+-+.+|+||+.+++.|.+.|.|+++|.+.+||++.+.+|....+...
T Consensus 1210 yYDIWGDtVNiASRMdsTGv~nRIQVs~~~~~~L~~rYeFe~Rg~v~VKGkd~M~tyLy~~r~d~ 1274 (1318)
T KOG3618|consen 1210 YYDIWGDTVNIASRMDSTGVENRIQVSEESYRVLSKRYEFEYRGTVNVKGKDQMKTYLYPKRTDH 1274 (1318)
T ss_pred eehhhcchhhhhhhccccCCcceeEecHHHHHHHHhhccccccceEEEeccCcceeEEeccccCC
Confidence 69999999999999999999999999999999999999999999999999999999988765444
No 5
>KOG1023|consensus
Probab=99.27 E-value=6e-12 Score=99.97 Aligned_cols=66 Identities=55% Similarity=0.997 Sum_probs=60.6
Q ss_pred CCcccccCchHHHHHHHhccCCCCeEEECHHHHhhccC--cceEEEcceEEecCcCceEEEEEeeeCCC
Q psy13613 1 MPRYCLFGDTVNTASRMESTSEPMKIHISENTKDLIPA--EYRVSQRGEILIKGKGSMKTYWLEQHDRR 67 (112)
Q Consensus 1 ~~~y~v~Gd~VNiAsRLes~a~~~~I~vS~~t~~~l~~--~~~~~~~~~~~lkG~~~~~~~~l~~~~~~ 67 (112)
||+|++|||+||+|+|||+.++ +.|++|+++...+.. .|.++.+|.+.+||++...+||+.+....
T Consensus 411 mPRYclFgDtvn~AsrMes~G~-~~i~~s~~~~~~l~~~~~~~~e~rG~v~~kgkg~~~t~wl~g~~~~ 478 (484)
T KOG1023|consen 411 MPRYCLFGDTVNTASRMESNGK-LMIHLSEEAKNLLTERPQFETEERGLVELKGKGVMSTYWLLGESSK 478 (484)
T ss_pred CCcccchhhHHHHHhhhhhcCC-eEEEecHHHHHHHHhcCceeeeccCcEEeecCceeeeEEeccCccc
Confidence 8999999999999999999999 999999999988742 78899999999999999999999886554
No 6
>COG2114 CyaA Adenylate cyclase, family 3 (some proteins contain HAMP domain) [Signal transduction mechanisms]
Probab=99.26 E-value=7.1e-12 Score=90.80 Aligned_cols=62 Identities=32% Similarity=0.438 Sum_probs=56.4
Q ss_pred ccccCchHHHHHHHhccCCCCeEEECHHHHhhcc-CcceEEEcceEEecCcCce-EEEEEeeeC
Q psy13613 4 YCLFGDTVNTASRMESTSEPMKIHISENTKDLIP-AEYRVSQRGEILIKGKGSM-KTYWLEQHD 65 (112)
Q Consensus 4 y~v~Gd~VNiAsRLes~a~~~~I~vS~~t~~~l~-~~~~~~~~~~~~lkG~~~~-~~~~l~~~~ 65 (112)
||+||++||+|+|||+++++++|++|+.|++.+. ..+.+...|...+||+..+ ..|.+....
T Consensus 154 ~~~~G~~VN~AaRLe~~a~~g~i~iS~~~~~~~~~~~~~~~~~g~~~lkg~~~~~~v~~~~~~~ 217 (227)
T COG2114 154 YTVVGSAVNQAARLESLAKPGQVLLSEATYDLVRDLVDLFSGLGSHRLKGLARPVRVYQLCHRS 217 (227)
T ss_pred eeEechHhHHHHHHHHhcCCCeEEEcHHHHHHHhhhhhhhhcCCceecCCCCCceEEEEecccc
Confidence 7999999999999999999999999999999999 6888889999999999887 778776543
No 7
>cd07302 CHD cyclase homology domain. Catalytic domains of the mononucleotidyl cyclases (MNC's), also called cyclase homology domains (CHDs), are part of the class III nucleotidyl cyclases. This class includes eukaryotic and prokaryotic adenylate cyclases (AC's) and guanylate cyclases (GC's). They seem to share a common catalytic mechanism in their requirement for two magnesium ions to bind the polyphosphate moiety of the nucleotide.
Probab=99.14 E-value=1.3e-10 Score=78.74 Aligned_cols=59 Identities=39% Similarity=0.667 Sum_probs=54.2
Q ss_pred CcccccCchHHHHHHHhccCCCCeEEECHHHHhhccC-cceEEEcceEEecCcCce-EEEE
Q psy13613 2 PRYCLFGDTVNTASRMESTSEPMKIHISENTKDLIPA-EYRVSQRGEILIKGKGSM-KTYW 60 (112)
Q Consensus 2 ~~y~v~Gd~VNiAsRLes~a~~~~I~vS~~t~~~l~~-~~~~~~~~~~~lkG~~~~-~~~~ 60 (112)
++|++||++||+|+||++.+++++|++|+++++.+.. .|.+.+.+.+.+||...+ .+|.
T Consensus 116 ~~~~~~G~~v~~A~rl~~~a~~~~i~vs~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~y~ 176 (177)
T cd07302 116 PEYTVIGDTVNLAARLESLAKPGQILVSEATYELLGDAGFEFEELGEVELKGKSGPVRVYR 176 (177)
T ss_pred cceeEecchHhHHHHHHhcCCCCEEEECHHHHHhhccCceEEEEeCCEEecCCCCceEEEE
Confidence 6799999999999999999999999999999999998 899999999999998655 5564
No 8
>smart00044 CYCc Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes.
Probab=98.51 E-value=7.6e-08 Score=67.37 Aligned_cols=37 Identities=62% Similarity=0.977 Sum_probs=35.0
Q ss_pred CcccccCchHHHHHHHhccCCCCeEEECHHHHhhccC
Q psy13613 2 PRYCLFGDTVNTASRMESTSEPMKIHISENTKDLIPA 38 (112)
Q Consensus 2 ~~y~v~Gd~VNiAsRLes~a~~~~I~vS~~t~~~l~~ 38 (112)
++||+||++||+|+||++.+++++|++|+++++.+..
T Consensus 151 ~~~~~~G~~vn~AarL~~~a~~g~i~vs~~~~~~l~~ 187 (194)
T smart00044 151 PRYCLFGDTVNLASRMESVGDPGQILVSEETYSLLRR 187 (194)
T ss_pred ceeEEeChHHHHHHHHHhcCCCCeEEECHHHHHHHHh
Confidence 6899999999999999999999999999999999853
No 9
>KOG3618|consensus
Probab=98.27 E-value=1.1e-06 Score=73.29 Aligned_cols=66 Identities=27% Similarity=0.471 Sum_probs=52.6
Q ss_pred CcccccCchHHHHHHHhccCCCCeEEECHHHHhhccCcceEEEc------ceEEecCcC------ceEEEEEeeeCCC
Q psy13613 2 PRYCLFGDTVNTASRMESTSEPMKIHISENTKDLIPAEYRVSQR------GEILIKGKG------SMKTYWLEQHDRR 67 (112)
Q Consensus 2 ~~y~v~Gd~VNiAsRLes~a~~~~I~vS~~t~~~l~~~~~~~~~------~~~~lkG~~------~~~~~~l~~~~~~ 67 (112)
..||||+++||+|+.||+.+.+|+++||++|...|++.|..++- +...+.|.. ...+|++.+..+.
T Consensus 453 fKFDVwSNDV~LAN~MEssGvag~VHiSeaTak~L~d~Ye~EeG~~~~g~~~~~V~g~~rRtnP~t~kt~li~G~~ga 530 (1318)
T KOG3618|consen 453 FKFDVWSNDVNLANLMESSGVAGKVHISEATAKYLDDRYEMEEGKVIEGLGQSVVAGQLRRTNPGTLKTYLISGQRGA 530 (1318)
T ss_pred EeeeeccCcchHHHHHHhcCCCcceEeeHHHHHHhcccceeccCccccccceeEEeceeeecCCcccceEEecCcccc
Confidence 36999999999999999999999999999999999998888753 344455532 2477877765533
No 10
>KOG3619|consensus
Probab=98.16 E-value=1.4e-06 Score=73.39 Aligned_cols=62 Identities=26% Similarity=0.366 Sum_probs=50.0
Q ss_pred cccccCchHHHHHHHhccCCCCeEEECHHHHhhccCcceEEEcceE--E-ecCcCceEEEEEeee
Q psy13613 3 RYCLFGDTVNTASRMESTSEPMKIHISENTKDLIPAEYRVSQRGEI--L-IKGKGSMKTYWLEQH 64 (112)
Q Consensus 3 ~y~v~Gd~VNiAsRLes~a~~~~I~vS~~t~~~l~~~~~~~~~~~~--~-lkG~~~~~~~~l~~~ 64 (112)
||||||++|.+|++||+.+.||+++||++|.+-|.++|.+++-... . .--+..+.+|.+...
T Consensus 226 q~DVws~dv~lAn~mEs~G~pgrVhis~~Tl~~L~g~yeve~g~g~~r~~~l~~~~~~ty~i~~~ 290 (867)
T KOG3619|consen 226 QYDVWSNDVTLANHMEAGGVPGRVHISKATLDCLNGEYEVEPGHGGERDPYLKEHGIETYLIIPP 290 (867)
T ss_pred eeeeccchhhhhhhhhhcCCCceeEechhHHHHhCCCceeecCCCcccchHHHhcCCceEEeccc
Confidence 8999999999999999999999999999999999999988875221 1 111234578888653
No 11
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=41.51 E-value=36 Score=15.70 Aligned_cols=20 Identities=5% Similarity=0.130 Sum_probs=16.6
Q ss_pred cccHHHHHHHHHHHHHHccC
Q psy13613 82 ELEWEKYADNMKDLVEERRV 101 (112)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~ 101 (112)
.+++.++...|..+++..|-
T Consensus 13 ~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 13 LGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HCHHHHHHHHHHHHHHHSTT
T ss_pred ccCHHHHHHHHHHHHHHCcC
Confidence 45788999999999998873
No 12
>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif. The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.
Probab=30.30 E-value=97 Score=17.75 Aligned_cols=28 Identities=25% Similarity=0.388 Sum_probs=20.8
Q ss_pred ccCcceEEEcceEEecCcCceEEEEEee
Q psy13613 36 IPAEYRVSQRGEILIKGKGSMKTYWLEQ 63 (112)
Q Consensus 36 l~~~~~~~~~~~~~lkG~~~~~~~~l~~ 63 (112)
|.++|.++--|.=.|+|..-|+.|+=..
T Consensus 1 ~~Dgy~WRKYGqK~i~g~~~pRsYYrCt 28 (60)
T PF03106_consen 1 LDDGYRWRKYGQKNIKGSPYPRSYYRCT 28 (60)
T ss_dssp --SSS-EEEEEEEEETTTTCEEEEEEEE
T ss_pred CCCCCchhhccCcccCCCceeeEeeecc
Confidence 4568999999999999988888876543
No 13
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=21.72 E-value=1e+02 Score=14.12 Aligned_cols=21 Identities=10% Similarity=0.034 Sum_probs=16.2
Q ss_pred ccccHHHHHHHHHHHHHHccC
Q psy13613 81 PELEWEKYADNMKDLVEERRV 101 (112)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~ 101 (112)
..+++.++...|.+.++.+|-
T Consensus 13 ~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 13 QLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HTT-HHHHHHHHHHHHHHSTT
T ss_pred HhCCHHHHHHHHHHHHHHCcC
Confidence 356789999999999888763
Done!