RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13613
(112 letters)
>gnl|CDD|201086 pfam00211, Guanylate_cyc, Adenylate and Guanylate cyclase catalytic
domain.
Length = 184
Score = 95.4 bits (238), Expect = 4e-26
Identities = 34/64 (53%), Positives = 46/64 (71%), Gaps = 2/64 (3%)
Query: 1 MPRYCLFGDTVNTASRMESTSEPMKIHISENTKDLI--PAEYRVSQRGEILIKGKGSMKT 58
PRY ++GDTVN ASRMEST P KIH+SE T L+ ++ ++RGE+ +KGKG M+T
Sbjct: 120 RPRYDVWGDTVNLASRMESTGVPGKIHVSEETYRLLKTREQFEFTERGEVEVKGKGKMET 179
Query: 59 YWLE 62
Y+L
Sbjct: 180 YFLN 183
>gnl|CDD|143636 cd07302, CHD, cyclase homology domain. Catalytic domains of the
mononucleotidyl cyclases (MNC's), also called cyclase
homology domains (CHDs), are part of the class III
nucleotidyl cyclases. This class includes eukaryotic and
prokaryotic adenylate cyclases (AC's) and guanylate
cyclases (GC's). They seem to share a common catalytic
mechanism in their requirement for two magnesium ions to
bind the polyphosphate moiety of the nucleotide.
Length = 177
Score = 88.4 bits (220), Expect = 1e-23
Identities = 26/63 (41%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 1 MPRYCLFGDTVNTASRMESTSEPMKIHISENTKDLIP-AEYRVSQRGEILIKGK-GSMKT 58
P Y + GDTVN A+R+ES ++P +I +SE T +L+ A + + GE+ +KGK G ++
Sbjct: 115 RPEYTVIGDTVNLAARLESLAKPGQILVSEATYELLGDAGFEFEELGEVELKGKSGPVRV 174
Query: 59 YWL 61
Y L
Sbjct: 175 YRL 177
>gnl|CDD|214485 smart00044, CYCc, Adenylyl- / guanylyl cyclase, catalytic domain.
Present in two copies in mammalian adenylyl cyclases.
Eubacterial homologues are known. Two residues (Asn,
Arg) are thought to be involved in catalysis. These
cyclases have important roles in a diverse range of
cellular processes.
Length = 194
Score = 75.0 bits (185), Expect = 4e-18
Identities = 24/40 (60%), Positives = 28/40 (70%)
Query: 1 MPRYCLFGDTVNTASRMESTSEPMKIHISENTKDLIPAEY 40
MPRYCLFGDTVN ASRMES +P +I +SE T L+
Sbjct: 150 MPRYCLFGDTVNLASRMESAGDPGQIQVSEETYSLLARRG 189
>gnl|CDD|225025 COG2114, CyaA, Adenylate cyclase, family 3 (some proteins contain
HAMP domain) [Signal transduction mechanisms].
Length = 227
Score = 51.8 bits (124), Expect = 4e-09
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 3 RYCLFGDTVNTASRMESTSEPMKIHISENTKDLIPAE-YRVSQRGEILIKGK-GSMKTYW 60
Y + G VN A+R+ES ++P ++ +SE T DL+ S G +KG ++ Y
Sbjct: 153 GYTVVGSAVNQAARLESLAKPGQVLLSEATYDLVRDLVDLFSGLGSHRLKGLARPVRVYQ 212
Query: 61 LEQHDRRAPLSR 72
L R L
Sbjct: 213 LCHRSLRRNLEL 224
>gnl|CDD|143637 cd07556, Nucleotidyl_cyc_III, Class III nucleotidyl cyclases.
Class III nucleotidyl cyclases are the largest, most
diverse group of nucleotidyl cyclases (NC's) containing
prokaryotic and eukaryotic proteins. They can be divided
into two major groups; the mononucleotidyl cyclases
(MNC's) and the diguanylate cyclases (DGC's). The
MNC's, which include the adenylate cyclases (AC's) and
the guanylate cyclases (GC's), have a conserved cyclase
homology domain (CHD), while the DGC's have a conserved
GGDEF domain, named after a conserved motif within this
subgroup. Their products, cyclic guanylyl and adenylyl
nucleotides, are second messengers that play important
roles in eukaryotic signal transduction and prokaryotic
sensory pathways.
Length = 133
Score = 42.3 bits (100), Expect = 4e-06
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 1 MPRYCLFGDTVNTASRMESTSEPMKIH 27
P+Y ++G VN ASRMES ++ ++
Sbjct: 107 RPQYDVWGALVNLASRMESQAKAGQVL 133
>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid
metabolism].
Length = 613
Score = 34.6 bits (80), Expect = 0.006
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 34 DLIP-AEYRVSQRGEILIKGKGSMKTYW 60
+P E +++ GEIL++G MK Y+
Sbjct: 408 KPLPGIEVKIADDGEILVRGPNVMKGYY 435
>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and
Bubblegum-like very long-chain fatty acid CoA
synthetases. This family includes long-chain fatty acid
(C12-C20) CoA synthetases and Bubblegum-like very
long-chain (>C20) fatty acid CoA synthetases. FACS
catalyzes the formation of fatty acyl-CoA in a two-step
reaction: the formation of a fatty acyl-AMP molecule as
an intermediate, and the formation of a fatty acyl-CoA.
Eukaryotes generally have multiple isoforms of LC-FACS
genes with multiple splice variants. For example, nine
genes are found in Arabidopsis and six genes are
expressed in mammalian cells. Drosophila melanogaster
mutant bubblegum (BGM) have elevated levels of
very-long-chain fatty acids (VLCFA) caused by a
defective gene later named bubblegum. The human homolog
(hsBG) of bubblegum has been characterized as a very
long chain fatty acid CoA synthetase that functions
specifically in the brain; hsBG may play a central role
in brain VLCFA metabolism and myelinogenesis. Free fatty
acids must be "activated" to their CoA thioesters before
participating in most catabolic and anabolic reactions.
Length = 456
Score = 31.7 bits (73), Expect = 0.058
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 38 AEYRVSQRGEILIKGKGSMKTYW 60
E R+++ GEIL++G MK Y+
Sbjct: 275 VEVRIAEDGEILVRGPNVMKGYY 297
>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated.
Length = 496
Score = 31.8 bits (72), Expect = 0.059
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 5/33 (15%)
Query: 28 ISENTKDLIPAEYRVSQRGEILIKGKGSMKTYW 60
I EN + E GE+LI+G MK YW
Sbjct: 331 IDENKNKVEVGEV-----GELLIRGPNVMKEYW 358
>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting
insects and 4-Coumarate-CoA Ligase (4CL). This family
contains two functionally unique groups of proteins; one
group is insect firefly luciferases and the other is
plant 4-coumarate:coenzyme A ligases. However, they
share significant sequence similarity in spite of their
functional diversity. Luciferase catalyzes the
production of light in the presence of MgATP, molecular
oxygen, and luciferin. In the first step, luciferin is
activated by acylation of its carboxylate group with
ATP, resulting in an enzyme-bound luciferyl adenylate.
In the second step, luciferyl adenylate reacts with
molecular oxygen, producing an enzyme-bound excited
state product (Luc=O*) and releasing AMP. This
excited-state product then decays to the ground state
(Luc=O), emitting a quantum of visible light.
4-coumarate:coenzyme A ligase is a key enzyme in the
phenylpropanoid metabolic pathway for monolignol and
flavonoid biosynthesis. It catalyzes the synthesis of
hydroxycinnamate-CoA thioesters in a two-step reaction,
involving the formation of hydroxycinnamate-AMP
anhydride and then the nucleophilic substitution of AMP
by CoA. The phenylpropanoid pathway is one of the most
important secondary metabolism pathways in plants and
hydroxycinnamate-CoA thioesters are the precursors of
lignin and other important phenylpropanoids.
Length = 487
Score = 31.4 bits (72), Expect = 0.076
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 5/37 (13%)
Query: 24 MKIHISENTKDLIPAEYRVSQRGEILIKGKGSMKTYW 60
KI + E+ + ++RGE+ +KG MK Y
Sbjct: 327 AKI-VDEDGGKSLG----PNERGELCVKGPQIMKGYL 358
>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as
O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or
MenE). O-succinylbenzoic acid-CoA synthase catalyzes
the coenzyme A (CoA)- and ATP-dependent conversion of
o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The
reaction is the fourth step of the biosynthesis pathway
of menaquinone (vitamin K2). In certain bacteria,
menaquinone is used during fumarate reduction in
anaerobic respiration. In cyanobacteria, the product of
the menaquinone pathway is phylloquinone
(2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used
exclusively as an electron transfer cofactor in
Photosystem 1. In green sulfur bacteria and
heliobacteria, menaquinones are used as loosely bound
secondary electron acceptors in the photosynthetic
reaction center.
Length = 407
Score = 29.5 bits (67), Expect = 0.35
Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 35 LIPAEYRV--SQRGEILIKGKGSMKTYWLEQHDRRAPL 70
L E R+ Q GEIL++G Y Q PL
Sbjct: 248 LPGRELRIVNPQDGEILVRGPSLFLGYL-PQGGLTPPL 284
>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA
synthetases similar to Escherichia coli FadD. This
subfamily of the AMP-forming adenylation family contains
Escherichia coli FadD and similar prokaryotic fatty acid
CoA synthetases. FadD was characterized as a long-chain
fatty acid CoA synthetase. The gene fadD is regulated by
the fatty acid regulatory protein FadR. Fatty acid CoA
synthetase catalyzes the formation of fatty acyl-CoA in
a two-step reaction: the formation of a fatty acyl-AMP
molecule as an intermediate, followed by the formation
of a fatty acyl-CoA. This is a required step before free
fatty acids can participate in most catabolic and
anabolic reactions.
Length = 468
Score = 28.6 bits (65), Expect = 0.61
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 6/37 (16%)
Query: 24 MKIHISENTKDLIPAEYRVSQRGEILIKGKGSMKTYW 60
+KI + + +L P E GE++++G MK YW
Sbjct: 306 VKI-VDDEGNELPPGE-----VGELVVRGPQVMKGYW 336
>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional.
Length = 562
Score = 28.6 bits (64), Expect = 0.62
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 39 EYRVSQRGEILIKGKGSMKTYW 60
E + +RGE+ IKG MK YW
Sbjct: 406 ELPLGERGELCIKGPQVMKGYW 427
>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme.
Length = 412
Score = 28.5 bits (64), Expect = 0.74
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 44 QRGEILIKGKGSMKTYW 60
+ GE+ I+G G + Y
Sbjct: 327 EVGELCIRGPGVARGYL 343
>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase. This model
represents an enzyme, O-succinylbenzoate-CoA ligase,
which is involved in the fourth step of the menaquinone
biosynthesis pathway. O-succinylbenzoate-CoA ligase,
together with menB - naphtoate synthase, take
2-succinylbenzoate and convert it into 1,4-di-hydroxy-2-
naphtoate [Biosynthesis of cofactors, prosthetic groups,
and carriers, Menaquinone and ubiquinone].
Length = 436
Score = 28.2 bits (63), Expect = 0.86
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Query: 1 MPRYCLFGDTVNTASRMESTSEPMKIHISENTKDLIPAEYRVSQ-----RGEILIKGKGS 55
+P Y +G T T S++ + + M + + L E ++ GEI++KG
Sbjct: 244 LPIYLSYGMT-ETCSQVTTATPEMLHARPDVGRPLAGREIKIKVDNKEGHGEIMVKGANL 302
Query: 56 MKTYW 60
MK Y
Sbjct: 303 MKGYL 307
>gnl|CDD|184910 PRK14946, PRK14946, DNA polymerase III subunit beta; Provisional.
Length = 366
Score = 28.3 bits (63), Expect = 0.90
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 9 DTVNTASRMESTSEPMKIHIS---ENTKDLIPAE 39
DT+ AS S P +I IS +N KD IP E
Sbjct: 173 DTIRFASEKIEISNPSRIDISISAKNLKDFIPPE 206
>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase;
Provisional.
Length = 483
Score = 28.0 bits (63), Expect = 1.2
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 5/38 (13%)
Query: 23 PMKIHISENTKDLIPAEYRVSQRGEILIKGKGSMKTYW 60
P ++ I ++ + P E GEI++KG K Y
Sbjct: 315 PCELKIEKDGVVVPPFE-----EGEIVVKGPNVTKGYL 347
>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA
synthetase (LC-FACS), including Marinobacter
hydrocarbonoclasticus isoprenoid Coenzyme A synthetase.
The members of this family are bacterial long-chain
fatty acid CoA synthetase. Marinobacter
hydrocarbonoclasticus isoprenoid Coenzyme A synthetase
in this family is involved in the synthesis of
isoprenoid wax ester storage compounds when grown on
phytol as the sole carbon source. LC-FACS catalyzes the
formation of fatty acyl-CoA in a two-step reaction: the
formation of a fatty acyl-AMP molecule as an
intermediate, and the formation of a fatty acyl-CoA.
Free fatty acids must be "activated" to their CoA
thioesters before participating in most catabolic and
anabolic reactions.
Length = 504
Score = 27.2 bits (61), Expect = 2.0
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 39 EYRVSQRGEILIKGKGSMKTYWLE 62
E ++S+ GEILI+ G M Y+ +
Sbjct: 336 ELKISEDGEILIRSPGLMSGYYKD 359
>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL). 4-Coumarate:coenzyme A
ligase is a key enzyme in the phenylpropanoid metabolic
pathway for monolignol and flavonoid biosynthesis. It
catalyzes the synthesis of hydroxycinnamate-CoA
thioesters in a two-step reaction, involving the
formation of hydroxycinnamate-AMP anhydride and the
nucleophilic substitution of AMP by CoA. The
phenylpropanoid pathway is one of the most important
secondary metabolism pathways in plants and
hydroxycinnamate-CoA thioesters are the precursors of
lignin and other important phenylpropanoids.
Length = 504
Score = 27.2 bits (61), Expect = 2.2
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 10/46 (21%)
Query: 14 ASRMESTSEPMKIHISENTKDLIPAEYRVSQRGEILIKGKGSMKTY 59
+E KI + T + +P +Q GE+ ++G MK Y
Sbjct: 336 VPNVE-----AKI-VDPETGESLP----PNQPGELWVRGPQVMKGY 371
>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 347
Score = 27.1 bits (61), Expect = 2.3
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 44 QRGEILIKGKGSMKTYW 60
+ GEI ++G MK Y+
Sbjct: 198 EVGEICVRGYSVMKGYY 214
>gnl|CDD|239088 cd02395, SF1_like-KH, Splicing factor 1 (SF1) K homology
RNA-binding domain (KH). Splicing factor 1 (SF1)
specifically recognizes the intron branch point
sequence (BPS) UACUAAC in the pre-mRNA transcripts
during spliceosome assembly. We show that the KH-QUA2
region of SF1 defines an enlarged KH (hnRNP K) fold
which is necessary and sufficient for BPS binding. KH
binds single-stranded RNA or DNA. It is found in a wide
variety of proteins including ribosomal proteins,
transcription factors and post-transcriptional
modifiers of mRNA.
Length = 120
Score = 26.1 bits (58), Expect = 3.0
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 48 ILIKGKGSMKTYWLEQHDR 66
I I+GKGSMK E+ R
Sbjct: 39 ISIRGKGSMKDGKKEEELR 57
>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated.
Length = 562
Score = 26.6 bits (59), Expect = 3.2
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 39 EYRVSQRGEILIKGKGSMKTYWLEQHD 65
E + + GE+ +KG MK YW
Sbjct: 398 ELPLGEVGELCVKGPQVMKGYWQRPEA 424
>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I. This
family includes acyl- and aryl-CoA ligases, as well as
the adenylation domain of nonribosomal peptide
synthetases and firefly luciferases. The
adenylate-forming enzymes catalyze an ATP-dependent
two-step reaction to first activate a carboxylate
substrate as an adenylate and then transfer the
carboxylate to the pantetheine group of either coenzyme
A or an acyl-carrier protein. The active site of the
domain is located at the interface of a large N-terminal
subdomain and a smaller C-terminal subdomain.
Length = 338
Score = 26.1 bits (58), Expect = 4.1
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Query: 28 ISENTKDLIPAEYRVSQRGEILIKGKGSMKTYWLEQHDRRAPLSR 72
+ E K L P E GE++++G MK YW + A +
Sbjct: 183 VDEEGKPLPPGE-----VGELVVRGPWVMKGYWNNPPETTAAATE 222
>gnl|CDD|188658 cd09826, peroxidasin_like, Animal heme peroxidase domain of
peroxidasin and related proteins. Peroxidasin is a
secreted heme peroxidase which is involved in hydrogen
peroxide metabolism and peroxidative reactions in the
cardiovascular system. The domain co-occurs with
extracellular matrix domains and may play a role in the
formation of the extracellular matrix.
Length = 440
Score = 26.1 bits (58), Expect = 5.1
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Query: 55 SMKTYWLEQHDRRAPLSRLCTVPP 78
SM T WL +H+R A S L + P
Sbjct: 123 SMHTLWLREHNRIA--SELLELNP 144
>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA
synthetase (LC-FACS). The members of this family are
eukaryotic fatty acid CoA synthetases that activate
fatty acids with chain lengths of 12 to 20. LC-FACS
catalyzes the formation of fatty acyl-CoA in a two-step
reaction: the formation of a fatty acyl-AMP molecule as
an intermediate, and the formation of a fatty acyl-CoA.
This is a required step before free fatty acids can
participate in most catabolic and anabolic reactions.
Organisms tend to have multiple isoforms of LC-FACS
genes with multiple splice variants. For example, nine
genes are found in Arabidopsis and six genes are
expressed in mammalian cells.
Length = 539
Score = 26.0 bits (58), Expect = 5.1
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 3/31 (9%)
Query: 33 KDLIPAEYRVS---QRGEILIKGKGSMKTYW 60
D+ Y RGEI I+G K Y+
Sbjct: 335 VDVPEMGYFAKDDPPRGEICIRGPNVFKGYY 365
>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar
proteins. Bile acid-Coenzyme A ligase catalyzes the
formation of bile acid-CoA conjugates in a two-step
reaction: the formation of a bile acid-AMP molecule as
an intermediate, followed by the formation of a bile
acid-CoA. This ligase requires a bile acid with a free
carboxyl group, ATP, Mg2+, and CoA for synthesis of the
final bile acid-CoA conjugate. The bile acid-CoA
ligation is believed to be the initial step in the bile
acid 7alpha-dehydroxylation pathway in the intestinal
bacterium Eubacterium sp.
Length = 342
Score = 25.5 bits (57), Expect = 6.3
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 44 QRGEILIKGKGSMKTYW 60
+ GEI+++G M YW
Sbjct: 194 EVGEIVVRGPAVMAGYW 210
>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS). MCS catalyzes the
formation of malonyl-CoA in a two-step reaction
consisting of the adenylation of malonate with ATP,
followed by malonyl transfer from malonyl-AMP to CoA.
Malonic acid and its derivatives are the building blocks
of polyketides and malonyl-CoA serves as the substrate
of polyketide synthases. Malonyl-CoA synthetase has
broad substrate tolerance and can activate a variety of
malonyl acid derivatives. MCS may play an important role
in biosynthesis of polyketides, the important secondary
metabolites with therapeutic and agrochemical utility.
Length = 430
Score = 25.7 bits (57), Expect = 6.7
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 46 GEILIKGKGSMKTYW 60
GEI ++G YW
Sbjct: 286 GEIQVRGPNVFSEYW 300
>gnl|CDD|234389 TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclase fusion protein.
This model represents proteins of 1350 in length, in
multiple species of Burkholderia, in Acidovorax avenae
subsp. citrulli AAC00-1 and Delftia acidovorans SPH-1,
and in multiple copies in Sorangium cellulosum, in
genomic neighborhoods that include a
cyclodehydratase/docking scaffold fusion protein
(TIGR03882) and a member of the thiazole/oxazole
modified metabolite (TOMM) precursor family TIGR03795.
It has a kinase domain in the N-terminal 300 amino
acids, followed by a cyclase homology domain, followed
by regions without named domain definitions. It is a
probable bacteriocin-like metabolite biosynthesis
protein [Cellular processes, Toxin production and
resistance].
Length = 1266
Score = 25.6 bits (56), Expect = 8.6
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 8 GDTVNTASRMESTSEPMKIHISENTKDLI 36
G T N A RM++ +EP +I +SE + L+
Sbjct: 407 GTTPNAAVRMQAQAEPGQILVSEAARKLL 435
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.132 0.393
Gapped
Lambda K H
0.267 0.0756 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,597,617
Number of extensions: 464001
Number of successful extensions: 457
Number of sequences better than 10.0: 1
Number of HSP's gapped: 455
Number of HSP's successfully gapped: 38
Length of query: 112
Length of database: 10,937,602
Length adjustment: 76
Effective length of query: 36
Effective length of database: 7,566,698
Effective search space: 272401128
Effective search space used: 272401128
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.1 bits)