RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13613
(112 letters)
>1yk9_A Adenylate cyclase; beta-alpha-beta sandwich, structural genomics,
PSI, protein structure initiative; 2.70A {Mycobacterium
tuberculosis}
Length = 204
Score = 132 bits (334), Expect = 2e-40
Identities = 27/83 (32%), Positives = 44/83 (53%)
Query: 1 MPRYCLFGDTVNTASRMESTSEPMKIHISENTKDLIPAEYRVSQRGEILIKGKGSMKTYW 60
RYC++GD VN ASRMEST +I + + + + ++ + +RG I +KGKG M+T++
Sbjct: 122 RFRYCVWGDAVNVASRMESTDSVGQIQVPDEVYERLKDDFVLRERGHINVKGKGVMRTWY 181
Query: 61 LEQHDRRAPLSRLCTVPPSYPEL 83
L A + P +
Sbjct: 182 LIGRKVAADPGEVRGAEPRTAGV 204
>1ab8_A Adenylyl cyclase; lyase, complex (transferase-inhibitor); HET: FOK;
2.20A {Rattus norvegicus} SCOP: d.58.29.1 PDB: 1azs_B*
1cjk_B* 1cjt_B* 1cju_B* 1cjv_B* 1cs4_B* 1tl7_B* 1u0h_B*
2gvd_B* 2gvz_B* 3c14_B* 3c15_B* 3c16_B* 3e8a_B* 3g82_B*
3maa_B* 1cul_B*
Length = 220
Score = 126 bits (319), Expect = 3e-38
Identities = 28/63 (44%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 1 MPRYCLFGDTVNTASRMESTSEPMKIHISENTKD-LIPAEYRVSQRGEILIKGKGSMKTY 59
P+Y ++G+TVN ASRM+ST KI ++E T L Y + RG I +KGKG +KTY
Sbjct: 144 KPQYDIWGNTVNVASRMDSTGVLDKIQVTEETSLILQTLGYTCTCRGIINVKGKGDLKTY 203
Query: 60 WLE 62
++
Sbjct: 204 FVN 206
>2wz1_A Guanylate cyclase soluble subunit beta-1; lyase, GUCY1,
metal-binding, CGMP biosynthesis, nucleotide-B cyclase,
GUCY1B3, GTP-binding; 1.63A {Homo sapiens} PDB: 3uvj_B
Length = 219
Score = 126 bits (318), Expect = 5e-38
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 1 MPRYCLFGDTVNTASRMESTSEPMKIHISENTKDLIPA------EYRVSQRGEILIKGKG 54
MPRYCLFG+TVN SR E+T E KI++SE T + + ++ + RG + +KGK
Sbjct: 130 MPRYCLFGNTVNLTSRTETTGEKGKINVSEYTYRCLMSPENSDPQFHLEHRGPVSMKGKK 189
Query: 55 SMKTYWLEQHDRRAP 69
W
Sbjct: 190 EPMQVWFLSRKNTGT 204
>3uvj_A Guanylate cyclase soluble subunit alpha-3; nitric oxide, structural
genomics, structural genomics conso SGC, CGMP
biosynthesis; 2.08A {Homo sapiens}
Length = 225
Score = 115 bits (290), Expect = 1e-33
Identities = 24/104 (23%), Positives = 41/104 (39%), Gaps = 12/104 (11%)
Query: 1 MPRYCLFGDTVNTASRMESTSEPMKIHISENTKDLIPA--EYRVSQRGEILIKGKGS--- 55
MPRYCLFG+ V A++ ES S P KI++S T L+ + + R +
Sbjct: 126 MPRYCLFGNNVTLANKFESCSVPRKINVSPTTYRLLKDCPGFVFTPRSREELPPNFPSEI 185
Query: 56 -MKTYWLEQHDRRAPLSRLCTVPPSYPELEWEKYADNMKDLVEE 98
++L+ + + P + + + E N
Sbjct: 186 PGICHFLDAYQQGTN------SKPCFQKKDVEDGNANFLGKASG 223
>3et6_A Soluble guanylyl cyclase beta; guanylate cyclase, dimethylarsenic,
lyase, membrane, transmembrane; 2.55A {Chlamydomonas
reinhardtii} PDB: 3et6_B
Length = 190
Score = 109 bits (275), Expect = 8e-32
Identities = 35/68 (51%), Positives = 46/68 (67%), Gaps = 2/68 (2%)
Query: 1 MPRYCLFGDTVNTASRMESTSEPMKIHISENTKDLIPA--EYRVSQRGEILIKGKGSMKT 58
MPR+ LFGDTVNTASRMES E +IHISE + + + + +RG I +KGKG+M+T
Sbjct: 122 MPRFXLFGDTVNTASRMESHGEAGQIHISEACYCCLRSKERFEIRERGNITVKGKGTMRT 181
Query: 59 YWLEQHDR 66
Y L +R
Sbjct: 182 YLLSPLER 189
>1azs_A VC1; complex (lyase/hydrolase), hydrolase, signal transducing
protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A
{Canis lupus familiaris} SCOP: d.58.29.1 PDB: 1cs4_A*
1u0h_A* 2gvd_A* 2gvz_A* 3c14_A* 3c15_A* 3c16_A* 3e8a_A*
3g82_A* 3maa_A* 1cul_A* 1cjk_A* 1cju_A* 1cjv_A* 1cjt_A*
1tl7_A*
Length = 220
Score = 104 bits (261), Expect = 2e-29
Identities = 15/75 (20%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 1 MPRYCLFGDTVNTASRMESTSEPMKIHISENTKDLIPAEYRV--SQRGEILIKGKG-SMK 57
++ ++ + V A+ ME+ + +IHI++ T + +Y V GE K S++
Sbjct: 146 KWQFDVWSNDVTLANHMEAGGKAGRIHITKATLSYLNGDYEVEPGCGGERNAYLKEHSIE 205
Query: 58 TYWLEQHDRRAPLSR 72
T+ + + ++ +
Sbjct: 206 TFLILRCTQKRKEEK 220
>1y10_A Hypothetical protein RV1264/MT1302; adenylyl cyclase fold, lyase;
HET: 1PE; 2.30A {Mycobacterium tuberculosis} PDB:
1y11_A*
Length = 407
Score = 86.6 bits (214), Expect = 1e-21
Identities = 13/86 (15%), Positives = 33/86 (38%), Gaps = 6/86 (6%)
Query: 3 RYCLFGDTVNTASRMESTSEPMKIHISENTKDLI-----PAEYRVSQRGEILIKG-KGSM 56
FG VN ASR+ + P + ++++ ++ + ++ S G ++G +G +
Sbjct: 310 AGDWFGSPVNVASRVTGVARPGAVLVADSVREALGDAPEADGFQWSFAGPRRLRGIRGDV 369
Query: 57 KTYWLEQHDRRAPLSRLCTVPPSYPE 82
+ + + + R
Sbjct: 370 RLFRVRRGATRTGSGGAAQDDDLAGS 395
>1fx2_A Receptor-type adenylate cyclase gresag 4.1; CAMP, trypanosomes,
adenylyl cyclases, monomer-dimer, catalysis, lyase;
1.46A {Trypanosoma brucei} SCOP: d.58.29.1 PDB: 1fx4_A
Length = 235
Score = 76.8 bits (189), Expect = 1e-18
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 6/79 (7%)
Query: 1 MPRYCLFGDTVNTASRMESTSEPMKIHISENTKDLIPAEYR----VSQRGEILIKGK-GS 55
Y +G T N A+R ES + ++ ++ + AE R V+ G++ ++G
Sbjct: 151 TKGYDYYGRTPNMAARTESVANGGQVLMTHAAYMSLSAEDRKQIDVTALGDVALRGVSDP 210
Query: 56 MKTYWLEQ-HDRRAPLSRL 73
+K Y L R RL
Sbjct: 211 VKMYQLNTVPSRNFAALRL 229
>1ybt_A Hydrolase, alpha/beta hydrolase fold family; cyclase homology
domain, CHD, RV1900C; 2.31A {Mycobacterium tuberculosis}
PDB: 1ybu_A*
Length = 184
Score = 60.8 bits (148), Expect = 6e-13
Identities = 17/69 (24%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 6 LFGDTVNTASRMESTSEPMKIHISENTKDLIP-AEYRVSQRGEILIKGK-GSMKTYWLEQ 63
+ G V+ +R+ + + P ++ +S +D++ + +R ++RGE +KG G + L +
Sbjct: 118 VAGVAVHIGARVCALAGPSEVLVSSTVRDIVAGSRHRFAERGEQELKGVPGRWRLCVLMR 177
Query: 64 HDRRAPLSR 72
D A +R
Sbjct: 178 DD--ATRTR 184
>2w01_A Adenylate cyclase; guanylyl cyclase, class III nucleotidyl cyclase,
lyase; 2.31A {Synechocystis SP}
Length = 208
Score = 60.3 bits (147), Expect = 1e-12
Identities = 13/46 (28%), Positives = 19/46 (41%)
Query: 8 GDTVNTASRMESTSEPMKIHISENTKDLIPAEYRVSQRGEILIKGK 53
G VN R+ES + +I IS T + V+ + KG
Sbjct: 138 GAQVNLTYRIESYTTGGQIFISSTTLEAAGDRVHVNGNRTVQPKGV 183
>3r5g_A CYAB; adenylyl cyclase, lyase; 1.50A {Pseudomonas aeruginosa}
Length = 198
Score = 59.9 bits (146), Expect = 1e-12
Identities = 20/46 (43%), Positives = 25/46 (54%)
Query: 8 GDTVNTASRMESTSEPMKIHISENTKDLIPAEYRVSQRGEILIKGK 53
G VN ASR+ES SE +I IS T LI +G+I +KG
Sbjct: 136 GREVNLASRLESASEAGEILISHETYSLIKDVIMCRDKGQIAVKGF 181
>3mr7_A Adenylate/guanylate cyclase/hydrolase, alpha/beta family;
alpha-beta fold, structural genomics, PSI-2, protein
structu initiative; 2.60A {Ruegeria pomeroyi}
Length = 189
Score = 55.0 bits (133), Expect = 8e-11
Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 6/72 (8%)
Query: 4 YCLFGDTVNTASRMESTSEPMKIHISENTKDLIP--AEYRVSQRGEILIKGK-GSMKTY- 59
+FGD VN A+R+E+ SEP I +S+ + + G +K ++ +
Sbjct: 110 GDIFGDAVNVAARLEAISEPGAICVSDIVHQITQDRVSEPFTDLGLQKVKNITRPIRVWQ 169
Query: 60 --WLEQHDRRAP 69
D+
Sbjct: 170 WVPDADRDQSHD 181
>1wc3_A Adenylate cyclase; soluble adenylyl cyclase, CAMP signaling, lyase;
HET: APC; 1.9A {Spirulina platensis} SCOP: d.58.29.1
PDB: 1wc0_A* 1wc4_A* 1wc5_A* 2bw7_A* 1wc1_A* 1wc6_A*
Length = 219
Score = 54.1 bits (131), Expect = 2e-10
Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 8 GDTVNTASRMESTSEPMKIHISENTKDLIPAEYRVSQRGEILIKGK 53
G +VN A+R++ + P I +S +P + + +R + +KG
Sbjct: 159 GPSVNIAARLQEATAPNSIMVSAMVAQYVP-DEEIIKREFLELKGI 203
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.9 bits (77), Expect = 0.008
Identities = 7/22 (31%), Positives = 9/22 (40%)
Query: 60 WLEQHDRRAPLSRLCTVPPSYP 81
WLE L ++P S P
Sbjct: 218 WLENPSNTPDKDYLLSIPISCP 239
Score = 27.3 bits (60), Expect = 1.2
Identities = 15/89 (16%), Positives = 28/89 (31%), Gaps = 30/89 (33%)
Query: 14 ASRMESTSEPMKIHISENTKDLIPAEYRVSQRGEILIK----GKGSMKTYWLEQHDRRAP 69
+R+ + K S A +R G + G+G+ Y+ E
Sbjct: 128 TARIMAKRPFDKKSNS--------ALFRAVGEGNAQLVAIFGGQGNTDDYFEE------- 172
Query: 70 LSRLCTVPPSYPELEWEKYADNMKDLVEE 98
L L ++ Y + DL++
Sbjct: 173 LRDL-----------YQTYHVLVGDLIKF 190
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase;
transferase; 3.10A {Arabidospis thaliana}
Length = 979
Score = 30.4 bits (69), Expect = 0.10
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
Query: 24 MKIHISENTKDLIPAEYRVSQRGEILIKGKGSMKTYW 60
MKI + +T D + +Q GEI I+G MK Y
Sbjct: 413 MKI-VDPDTGDSLS----RNQPGEICIRGHQIMKGYL 444
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel,
alpha+beta, riken structural genomics/proteomics
initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata}
PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Length = 548
Score = 29.1 bits (66), Expect = 0.23
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
Query: 24 MKIHISENTKDLIPAEYRVSQRGEILIKGKGSMKTYW 60
K+ I +TK + ++RGE+ +KG MK Y
Sbjct: 373 AKV-IDLDTKKSLG----PNRRGEVCVKGPMLMKGYV 404
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase,
photoprotein, luminescence, aspulvinone, natural product
extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A
1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A
Length = 550
Score = 29.1 bits (66), Expect = 0.26
Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 5/37 (13%)
Query: 24 MKIHISENTKDLIPAEYRVSQRGEILIKGKGSMKTYW 60
K+ + +T + V+QRGE+ ++G M Y
Sbjct: 371 AKV-VDLDTGKTLG----VNQRGELCVRGPMIMSGYV 402
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL
EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Length = 536
Score = 28.7 bits (65), Expect = 0.34
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 5/37 (13%)
Query: 24 MKIHISENTKDLIPAEYRVSQRGEILIKGKGSMKTYW 60
MKI + T +P +Q GEI I+G MK Y
Sbjct: 366 MKI-VDPETGASLP----RNQPGEICIRGDQIMKGYL 397
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure
initiative, PSI-II, NYSGXRC, 11193J, structural
genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Length = 549
Score = 27.6 bits (62), Expect = 0.93
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 42 VSQRGEILIKGKGSMKTYW 60
V + GEI+I+G K YW
Sbjct: 380 VGESGEIVIRGPNIFKGYW 398
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 27.5 bits (61), Expect = 0.98
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 4/30 (13%)
Query: 74 CTVPPSYPELE--WEKYADNMKDLVEERRV 101
C PP P W +M+ + +++RV
Sbjct: 138 CNPPPGLPSPVIFWMS--SSMEPITQDKRV 165
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA
ligase; 1.84A {Burkholderia xenovorans}
Length = 529
Score = 27.1 bits (61), Expect = 1.1
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 44 QRGEILIKGKGSMKTYW 60
+ G++ IKG + YW
Sbjct: 377 EVGDLYIKGPSAAVMYW 393
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase);
ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis}
PDB: 3t5c_A 3t5b_A
Length = 517
Score = 27.1 bits (61), Expect = 1.4
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 46 GEILIKGKGSMKTYW 60
GE++IK +K YW
Sbjct: 363 GEVVIKSDILLKEYW 377
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase;
HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB:
4fut_A*
Length = 503
Score = 26.8 bits (60), Expect = 1.6
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 44 QRGEILIKGKGSMKTYW 60
G I +KG K YW
Sbjct: 346 DIGMIEVKGPNVFKGYW 362
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.5 bits (57), Expect = 2.0
Identities = 7/28 (25%), Positives = 13/28 (46%), Gaps = 6/28 (21%)
Query: 86 EKYADNMKDLVEERRVYSPN----LKLK 109
EK +K L ++Y+ + L +K
Sbjct: 18 EK--QALKKLQASLKLYADDSAPALAIK 43
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics,
PSI-2, protein S initiative, fatty acid synthesis; HET:
GOL; 2.00A {Rhodopseudomonas palustris}
Length = 509
Score = 26.4 bits (59), Expect = 2.3
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 44 QRGEILIKGKGSMKTYW 60
+ GEI+++G K YW
Sbjct: 346 EVGEIVLRGPTVFKGYW 362
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein
synthetase, PSI-2, protein structure initiative; 2.30A
{Staphylococcus aureus subsp}
Length = 501
Score = 26.4 bits (59), Expect = 2.3
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 46 GEILIKGKGSMKTYW 60
GE++IKG M Y
Sbjct: 349 GELMIKGANVMNGYL 363
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.4 bits (57), Expect = 3.0
Identities = 19/103 (18%), Positives = 34/103 (33%), Gaps = 13/103 (12%)
Query: 22 EPMKIHISENTKDLIPAEYRVSQR----GEILIKGKGSMKTYWLEQHDRRAP--LSRLCT 75
P I E +I ++ VS +L K + ++ + E +S + T
Sbjct: 41 MPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT 100
Query: 76 VPPSYPELEWEKYAD------NMKDLVEERRVYSPNLKLKLKQ 112
P + Y + N + + V LKL+Q
Sbjct: 101 EQRQ-PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ 142
>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase;
oxidoreductase, structural genomics, NPPSFA; 2.40A
{Sulfolobus tokodaii}
Length = 350
Score = 25.2 bits (56), Expect = 4.9
Identities = 5/25 (20%), Positives = 9/25 (36%)
Query: 19 STSEPMKIHISENTKDLIPAEYRVS 43
E K++ +IPA +
Sbjct: 208 IAKELTKLNGKLENNQIIPANLDST 232
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel
adenylate-forming EN fold; HET: MCA AMP; 1.43A
{Streptomyces coelicolor} PDB: 3nyr_A*
Length = 505
Score = 25.3 bits (56), Expect = 5.1
Identities = 5/17 (29%), Positives = 7/17 (41%)
Query: 44 QRGEILIKGKGSMKTYW 60
GEI ++G Y
Sbjct: 352 SVGEIQVRGPNLFTEYL 368
>3fxb_A Trap dicarboxylate transporter, DCTP subunit; periplasmic substrate
binding protein, selectivity helix, TR membrane; HET:
4CS; 2.90A {Silicibacter pomeroyi dss-3}
Length = 326
Score = 25.0 bits (55), Expect = 6.9
Identities = 5/36 (13%), Positives = 11/36 (30%), Gaps = 9/36 (25%)
Query: 75 TVPPSYPELEWEKYADNMKDLVEER-----RVYSPN 105
+ YA K+ +E +++ P
Sbjct: 22 EEAMTDV---QGVYAQKFKEEIEANSDHEIQLF-PY 53
>2vpn_A Periplasmic substrate binding protein; ectoine, hydroxyectoine,
trap-transporter, periplasmic binding protein,
transport; HET: 4CS; 1.55A {Halomonas elongata} PDB:
2vpo_A* 3gyy_A
Length = 316
Score = 24.9 bits (55), Expect = 7.0
Identities = 6/36 (16%), Positives = 10/36 (27%), Gaps = 9/36 (25%)
Query: 75 TVPPSYPELEWEKYADNMKDLVEER-----RVYSPN 105
+ +A K VE+ +VY
Sbjct: 8 EEYEGDV---QDVFAQAFKGYVEDNSDHTVQVY-RF 39
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate
synthetase, isochroismatase...; adenylate-forming
enzymes, ANL superfamily; HET: SVS PNS; 3.10A
{Escherichia coli}
Length = 617
Score = 24.9 bits (55), Expect = 8.0
Identities = 6/26 (23%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 44 QRGEILIKGKGSMKTYW-LEQHDRRA 68
+ G ++ +G + + Y+ QH+ A
Sbjct: 381 EVGRLMTRGPYTFRGYYKSPQHNASA 406
>3o83_A Peptide arylation enzyme; ligase, adenylation of
2,3-dihydroxybenzoate and transfer to pantetheine
cofactor of BASF; HET: IXN; 1.90A {Acinetobacter
baumannii} PDB: 3o82_A* 3o84_A*
Length = 544
Score = 24.8 bits (55), Expect = 8.2
Identities = 4/26 (15%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 44 QRGEILIKGKGSMKTYW-LEQHDRRA 68
+ G + +G + Y+ +H+ +
Sbjct: 386 EIGMLATRGPYTFCGYYQSPEHNSQV 411
>3u65_B TP33 protein; tetratrico peptide repeat, protein-prote
interaction, syphilis, lipoprotein, transport protein;
HET: EDO; 1.40A {Treponema pallidum subsp} PDB: 4di4_B*
4di3_D*
Length = 328
Score = 24.7 bits (54), Expect = 9.0
Identities = 4/25 (16%), Positives = 5/25 (20%), Gaps = 3/25 (12%)
Query: 75 TVPPSYPELEWEKYADNMKDLVEER 99
P WE + E
Sbjct: 17 IAPARSI---WETELKKLSAEWSEI 38
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 24.4 bits (53), Expect = 9.8
Identities = 9/32 (28%), Positives = 11/32 (34%), Gaps = 4/32 (12%)
Query: 74 CTVPPSYPELE--WEKYADNMKDLVEERRVYS 103
C PP EL W + + RR S
Sbjct: 124 CGPPPHSGELSYAWIF--NEYPSYQDNRRFVS 153
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.132 0.393
Gapped
Lambda K H
0.267 0.0789 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,679,595
Number of extensions: 85981
Number of successful extensions: 222
Number of sequences better than 10.0: 1
Number of HSP's gapped: 215
Number of HSP's successfully gapped: 47
Length of query: 112
Length of database: 6,701,793
Length adjustment: 76
Effective length of query: 36
Effective length of database: 4,579,797
Effective search space: 164872692
Effective search space used: 164872692
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.3 bits)