RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13613
         (112 letters)



>d1azsb_ d.58.29.1 (B:) Adenylyl cyclase IIC1, domain C2a {Rat
           (Rattus norvegicus) [TaxId: 10116]}
          Length = 199

 Score = 82.3 bits (202), Expect = 2e-21
 Identities = 27/62 (43%), Positives = 41/62 (66%), Gaps = 1/62 (1%)

Query: 1   MPRYCLFGDTVNTASRMESTSEPMKIHISENTKDLIP-AEYRVSQRGEILIKGKGSMKTY 59
            P+Y ++G+TVN ASRM+ST    KI ++E T  ++    Y  + RG I +KGKG +KTY
Sbjct: 136 KPQYDIWGNTVNVASRMDSTGVLDKIQVTEETSLILQTLGYTCTCRGIINVKGKGDLKTY 195

Query: 60  WL 61
           ++
Sbjct: 196 FV 197


>d1azsa_ d.58.29.1 (A:) Adenylyl cyclase VC1, domain C1a {Dog (Canis
           familiaris) [TaxId: 9615]}
          Length = 190

 Score = 65.3 bits (158), Expect = 5e-15
 Identities = 15/64 (23%), Positives = 32/64 (50%), Gaps = 3/64 (4%)

Query: 1   MPRYCLFGDTVNTASRMESTSEPMKIHISENTKDLIPAEYRVS--QRGEILIKGK-GSMK 57
             ++ ++ + V  A+ ME+  +  +IHI++ T   +  +Y V     GE     K  S++
Sbjct: 126 KWQFDVWSNDVTLANHMEAGGKAGRIHITKATLSYLNGDYEVEPGCGGERNAYLKEHSIE 185

Query: 58  TYWL 61
           T+ +
Sbjct: 186 TFLI 189


>d1fx2a_ d.58.29.1 (A:) Receptor-type monomeric adenylyl cyclase
           {Trypanosome (Trypanosoma brucei), different isoform
           [TaxId: 5691]}
          Length = 235

 Score = 58.8 bits (141), Expect = 2e-12
 Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 6/79 (7%)

Query: 1   MPRYCLFGDTVNTASRMESTSEPMKIHISENTKDLI----PAEYRVSQRGEILIKGKG-S 55
              Y  +G T N A+R ES +   ++ ++      +      +  V+  G++ ++G    
Sbjct: 151 TKGYDYYGRTPNMAARTESVANGGQVLMTHAAYMSLSAEDRKQIDVTALGDVALRGVSDP 210

Query: 56  MKTYWLEQ-HDRRAPLSRL 73
           +K Y L     R     RL
Sbjct: 211 VKMYQLNTVPSRNFAALRL 229


>d1wc1a_ d.58.29.1 (A:) Adenylate cyclase CyaC {Spirulina platensis
           [TaxId: 118562]}
          Length = 197

 Score = 56.5 bits (135), Expect = 1e-11
 Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 1   MPRYCLFGDTVNTASRMESTSEPMKIHISENTKDLIPAEYRVSQRGEILIKGKG-SMKTY 59
              +   G +VN A+R++  + P  I +S      +P +  + +R  + +KG    + T 
Sbjct: 132 RSDFTAIGPSVNIAARLQEATAPNSIMVSAMVAQYVP-DEEIIKREFLELKGIDEPVMTC 190

Query: 60  WL 61
            +
Sbjct: 191 VI 192


>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin
           synthetase 1 {Bacillus brevis [TaxId: 1393]}
          Length = 514

 Score = 26.8 bits (58), Expect = 0.63
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 42  VSQRGEILIKGKGSMKTYW 60
           V + GE+ I G+G  + YW
Sbjct: 353 VGEAGELCIGGEGLARGYW 371


>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis)
           [TaxId: 7054]}
          Length = 541

 Score = 26.4 bits (57), Expect = 0.88
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 42  VSQRGEILIKGKGSMKTYW 60
           V+QRGE+ ++G   M  Y 
Sbjct: 381 VNQRGELCVRGPMIMSGYV 399


>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168
           {Thermus thermophilus [TaxId: 274]}
          Length = 534

 Score = 26.4 bits (57), Expect = 0.94
 Identities = 6/37 (16%), Positives = 18/37 (48%), Gaps = 2/37 (5%)

Query: 24  MKIHISENTKDLIPAEYRVSQRGEILIKGKGSMKTYW 60
           +++ +++     +P + +    GE+ +KG      Y+
Sbjct: 357 VRLRVADEEGRPVPKDGKA--LGEVQLKGPWITGGYY 391


>d2d0ta1 a.266.1.2 (A:12-403) Indoleamine 2,3-dioxygenase {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 392

 Score = 23.8 bits (51), Expect = 6.3
 Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 5/33 (15%)

Query: 69  PLSRLCTVPPSYPELEWEKYADNMKDLVEERRV 101
           P   L   P  Y +  W   A ++ DL+E  ++
Sbjct: 17  PQENL---PDFYND--WMFIAKHLPDLIESGQL 44


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.132    0.393 

Gapped
Lambda     K      H
   0.267   0.0653    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 416,655
Number of extensions: 17365
Number of successful extensions: 38
Number of sequences better than 10.0: 1
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 15
Length of query: 112
Length of database: 2,407,596
Length adjustment: 71
Effective length of query: 41
Effective length of database: 1,432,766
Effective search space: 58743406
Effective search space used: 58743406
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.0 bits)