BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy13614
         (118 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3MZV|A Chain A, Crystal Structure Of A Decaprenyl Diphosphate Synthase
           From Rhodobacter Capsulatus
 pdb|3MZV|B Chain B, Crystal Structure Of A Decaprenyl Diphosphate Synthase
           From Rhodobacter Capsulatus
          Length = 341

 Score = 27.7 bits (60), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 2/69 (2%)

Query: 30  FVYLSCVLLFAGTVDNLLLRDKFGQSIGGR-LVVANIAWPNEWVILIGSFLSTIGAGLQS 88
            V+L+  + F  T   LL  D   +S   R    AN+ W N+  +L+G +L      L +
Sbjct: 75  HVHLAATVEFIHTA-TLLHDDVVDESRQRRGRPTANLLWDNKSSVLVGDYLFARSFQLMT 133

Query: 89  LTGAPRLLQ 97
            TG  R+++
Sbjct: 134 DTGNMRVME 142


>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4
           (Aqp4m23) At 3.2 A Resolution By Electron
           Crystallography
          Length = 301

 Score = 25.8 bits (55), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 33/84 (39%), Gaps = 24/84 (28%)

Query: 54  QSIGGRLVVANIAWPNEWVILIGSFLSTIGAG-LQSLTGAP------RLLQ------QGP 100
           +S G  +++ N  W N W+  +G  +  + AG L      P      RL +      Q  
Sbjct: 194 RSFGPAVIMGN--WENHWIYWVGPIIGAVLAGALYEYVFCPDVELKRRLKEAFSKAAQQT 251

Query: 101 KSDIIRTEDNR---------LKPG 115
           K   +  EDNR         LKPG
Sbjct: 252 KGSYMEVEDNRSQVETEDLILKPG 275


>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution
           By Electron Crystallography
          Length = 301

 Score = 25.8 bits (55), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 33/84 (39%), Gaps = 24/84 (28%)

Query: 54  QSIGGRLVVANIAWPNEWVILIGSFLSTIGAG-LQSLTGAP------RLLQ------QGP 100
           +S G  +++ N  W N W+  +G  +  + AG L      P      RL +      Q  
Sbjct: 194 RSFGPAVIMGN--WENHWIYWVGPIIGAVLAGALYEYVFCPDVELKRRLKEAFSKAAQQT 251

Query: 101 KSDIIRTEDNR---------LKPG 115
           K   +  EDNR         LKPG
Sbjct: 252 KGSYMEVEDNRSQVETEDLILKPG 275


>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution
           From Electron Micrograph
          Length = 340

 Score = 25.4 bits (54), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 33/84 (39%), Gaps = 24/84 (28%)

Query: 54  QSIGGRLVVANIAWPNEWVILIGSFLSTIGAG-LQSLTGAP------RLLQ------QGP 100
           +S G  +++ N  W N W+  +G  +  + AG L      P      RL +      Q  
Sbjct: 233 RSFGPAVIMGN--WENHWIYWVGPIIGAVLAGALYEYVFCPDVELKRRLKEAFSKAAQQT 290

Query: 101 KSDIIRTEDNR---------LKPG 115
           K   +  EDNR         LKPG
Sbjct: 291 KGSYMEVEDNRSQVETEDLILKPG 314


>pdb|3OCE|A Chain A, Crystal Structure Of Fumarate Lyase:delta Crystallin From
           Brucella Melitensis Bound To Cobalt
 pdb|3OCE|B Chain B, Crystal Structure Of Fumarate Lyase:delta Crystallin From
           Brucella Melitensis Bound To Cobalt
 pdb|3OCE|C Chain C, Crystal Structure Of Fumarate Lyase:delta Crystallin From
           Brucella Melitensis Bound To Cobalt
 pdb|3OCE|D Chain D, Crystal Structure Of Fumarate Lyase:delta Crystallin From
           Brucella Melitensis Bound To Cobalt
          Length = 474

 Score = 25.0 bits (53), Expect = 9.7,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 2/59 (3%)

Query: 58  GRLVVANIAWPNEWVILIGSFLSTIGAGLQSLTGAPRLLQQGPKSDIIRTEDNRLKPGS 116
           G LV A  +W     +     L  I   L  +    RLL  GP+S +       ++PGS
Sbjct: 265 GNLVEA--SWDTGAFVTFSGILRRIAVKLSKIANDLRLLSSGPRSGLGEIRLPAVQPGS 321


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.138    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,409,207
Number of Sequences: 62578
Number of extensions: 119818
Number of successful extensions: 219
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 215
Number of HSP's gapped (non-prelim): 12
length of query: 118
length of database: 14,973,337
effective HSP length: 81
effective length of query: 37
effective length of database: 9,904,519
effective search space: 366467203
effective search space used: 366467203
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)