Query psy13614
Match_columns 118
No_of_seqs 127 out of 1039
Neff 8.7
Searched_HMMs 46136
Date Fri Aug 16 15:42:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13614.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13614hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1289|consensus 99.8 1.9E-21 4.1E-26 149.2 7.3 115 2-117 270-387 (550)
2 TIGR00906 2A0303 cationic amin 99.8 1.2E-20 2.7E-25 147.6 8.8 109 3-117 250-359 (557)
3 TIGR03428 ureacarb_perm permea 99.8 3E-20 6.6E-25 142.8 10.0 113 2-117 231-345 (475)
4 TIGR00930 2a30 K-Cl cotranspor 99.8 1.7E-20 3.7E-25 153.6 7.9 116 2-117 298-434 (953)
5 TIGR00907 2A0304 amino acid pe 99.8 5.3E-20 1.2E-24 141.5 10.0 114 2-117 235-352 (482)
6 PRK11357 frlA putative fructos 99.8 2.4E-20 5.1E-25 142.2 7.9 112 3-117 214-326 (445)
7 PRK10655 potE putrescine trans 99.8 5.5E-20 1.2E-24 139.9 9.1 112 2-118 207-319 (438)
8 PRK10644 arginine:agmatin anti 99.8 4.7E-20 1E-24 140.7 8.6 111 3-118 210-321 (445)
9 PRK15049 L-asparagine permease 99.8 4.5E-20 9.7E-25 142.8 7.1 111 3-118 239-350 (499)
10 PRK10435 cadB lysine/cadaverin 99.8 1.1E-19 2.3E-24 138.5 9.0 112 3-118 206-317 (435)
11 PRK11021 putative transporter; 99.8 1E-19 2.2E-24 137.5 8.7 112 2-118 195-307 (410)
12 PRK11387 S-methylmethionine tr 99.8 3.8E-20 8.3E-25 142.1 5.9 111 3-118 225-336 (471)
13 PRK10836 lysine transporter; P 99.8 1.2E-19 2.5E-24 140.1 7.3 112 3-118 224-343 (489)
14 TIGR01773 GABAperm gamma-amino 99.8 1.1E-19 2.5E-24 138.7 7.2 112 3-118 220-332 (452)
15 TIGR00911 2A0308 L-type amino 99.8 2.4E-19 5.2E-24 138.6 8.5 110 3-117 254-363 (501)
16 KOG1286|consensus 99.8 1.2E-19 2.5E-24 141.6 6.6 111 4-118 252-367 (554)
17 TIGR00913 2A0310 amino acid pe 99.8 1.3E-19 2.7E-24 139.2 6.3 112 3-118 216-336 (478)
18 TIGR03813 put_Glu_GABA_T putat 99.8 3.9E-19 8.4E-24 136.6 9.0 113 3-118 213-327 (474)
19 PRK10197 gamma-aminobutyrate t 99.8 2.1E-19 4.6E-24 137.3 7.1 112 3-118 200-312 (446)
20 PRK10238 aromatic amino acid t 99.8 2.1E-19 4.6E-24 137.6 6.8 111 3-118 219-330 (456)
21 PRK10249 phenylalanine transpo 99.8 1.6E-19 3.5E-24 138.3 6.2 112 3-118 228-339 (458)
22 TIGR00908 2A0305 ethanolamine 99.8 4.9E-19 1.1E-23 134.8 8.4 112 3-118 210-323 (442)
23 KOG2082|consensus 99.8 1.1E-19 2.3E-24 143.2 4.5 118 1-118 427-544 (1075)
24 TIGR00909 2A0306 amino acid tr 99.8 9.3E-19 2E-23 132.6 8.6 110 3-117 214-324 (429)
25 TIGR00905 2A0302 transporter, 99.8 1.2E-18 2.5E-23 134.0 8.7 112 3-118 218-329 (473)
26 PRK10746 putative transport pr 99.8 3.6E-19 7.7E-24 136.6 5.7 111 3-118 219-330 (461)
27 KOG1287|consensus 99.8 8E-19 1.7E-23 133.9 7.4 108 5-117 225-332 (479)
28 PRK11049 D-alanine/D-serine/gl 99.8 5.2E-19 1.1E-23 135.8 6.3 112 3-118 230-341 (469)
29 PRK10580 proY putative proline 99.8 8.8E-19 1.9E-23 134.1 6.6 111 3-118 218-329 (457)
30 TIGR03810 arg_ornith_anti argi 99.8 2.9E-18 6.3E-23 131.6 9.3 111 3-118 214-325 (468)
31 TIGR00910 2A0307_GadC glutamat 99.8 2.5E-18 5.4E-23 133.4 7.5 113 3-118 213-329 (507)
32 COG0531 PotE Amino acid transp 99.7 5.3E-18 1.1E-22 128.9 8.5 113 3-118 220-333 (466)
33 PF00324 AA_permease: Amino ac 99.7 5.3E-19 1.1E-23 135.9 1.5 116 2-118 218-336 (478)
34 COG0833 LysP Amino acid transp 99.7 1.9E-17 4.2E-22 127.4 6.9 111 6-118 256-372 (541)
35 PF13520 AA_permease_2: Amino 99.7 5.6E-17 1.2E-21 122.6 9.1 112 3-118 207-319 (426)
36 KOG1288|consensus 99.6 4.7E-16 1E-20 122.1 8.0 107 1-116 311-418 (945)
37 PRK15238 inner membrane transp 99.6 1.5E-15 3.2E-20 117.5 8.2 114 3-118 230-363 (496)
38 COG1113 AnsP Gamma-aminobutyra 99.5 2.7E-15 5.9E-20 113.7 -0.5 108 6-118 225-333 (462)
39 KOG2083|consensus 98.6 9.4E-08 2E-12 75.0 5.5 115 1-116 240-362 (643)
40 TIGR00837 araaP aromatic amino 98.3 3.4E-06 7.3E-11 63.3 7.9 99 5-103 199-303 (381)
41 TIGR00796 livcs branched-chain 97.5 0.0013 2.7E-08 50.1 9.3 92 8-99 206-299 (378)
42 TIGR00912 2A0309 spore germina 96.9 0.012 2.7E-07 43.8 9.0 45 6-51 201-245 (359)
43 PHA02764 hypothetical protein; 94.4 0.069 1.5E-06 40.1 4.1 27 89-117 256-282 (399)
44 PF03222 Trp_Tyr_perm: Tryptop 93.9 0.66 1.4E-05 35.5 8.8 90 8-97 208-302 (394)
45 TIGR00814 stp serine transport 92.5 1.7 3.8E-05 33.3 9.2 43 8-50 214-259 (397)
46 PRK10483 tryptophan permease; 90.2 3.5 7.6E-05 32.0 8.8 87 12-99 221-312 (414)
47 PRK15132 tyrosine transporter 89.5 7.9 0.00017 29.9 10.2 89 11-100 208-302 (403)
48 PRK13629 threonine/serine tran 89.1 7.4 0.00016 30.5 9.8 38 13-50 248-285 (443)
49 COG0814 SdaC Amino acid permea 86.4 4.1 8.8E-05 31.5 7.0 41 6-46 215-256 (415)
50 COG3949 Uncharacterized membra 80.1 24 0.00052 26.9 8.5 87 5-97 200-286 (349)
51 PF01235 Na_Ala_symp: Sodium:a 78.6 4.3 9.3E-05 31.6 4.4 96 4-100 242-338 (416)
52 PRK09664 tryptophan permease T 72.4 44 0.00096 26.1 10.3 36 14-49 223-258 (415)
53 PRK00968 tetrahydromethanopter 72.3 6.8 0.00015 27.8 3.7 31 7-37 204-235 (240)
54 PF05525 Branch_AA_trans: Bran 68.4 30 0.00064 27.1 6.8 34 68-101 274-307 (427)
55 TIGR00835 agcS amino acid carr 66.0 50 0.0011 25.9 7.6 99 4-103 269-368 (425)
56 KOG1303|consensus 62.6 9.7 0.00021 29.8 3.2 33 8-41 252-284 (437)
57 COG1115 AlsT Na+/alanine sympo 62.1 54 0.0012 25.9 7.1 36 68-103 350-385 (452)
58 PRK15433 branched-chain amino 56.1 68 0.0015 25.3 6.8 33 68-100 278-310 (439)
59 PTZ00206 amino acid transporte 50.0 18 0.0004 28.3 3.0 36 6-41 278-314 (467)
60 PRK09442 panF sodium/panthothe 49.7 94 0.002 24.3 6.9 26 10-36 263-288 (483)
61 PF01490 Aa_trans: Transmembra 47.9 5.9 0.00013 29.7 -0.1 38 5-42 213-252 (409)
62 TIGR02119 panF sodium/pantothe 46.3 1.2E+02 0.0026 23.5 7.0 27 10-37 262-288 (471)
63 PHA02844 putative transmembran 45.1 47 0.001 19.5 3.4 26 6-31 31-56 (75)
64 PF11169 DUF2956: Protein of u 43.7 34 0.00073 21.4 2.8 22 14-35 82-103 (103)
65 KOG4753|consensus 42.2 28 0.00061 22.4 2.4 28 7-34 41-68 (124)
66 PF14715 FixP_N: N-terminal do 42.0 58 0.0012 17.6 3.6 26 8-36 14-39 (51)
67 PF11998 DUF3493: Protein of u 41.9 33 0.00072 20.2 2.5 33 6-38 9-41 (75)
68 PF00474 SSF: Sodium:solute sy 38.2 1.3E+02 0.0027 22.8 5.8 21 14-34 231-251 (406)
69 COG4060 MtrD Tetrahydromethano 38.2 60 0.0013 22.5 3.6 27 8-34 195-222 (230)
70 PLN03074 auxin influx permease 34.6 36 0.00079 26.8 2.4 31 7-38 256-286 (473)
71 PRK09510 tolA cell envelope in 34.1 68 0.0015 24.9 3.8 28 12-39 6-33 (387)
72 PF01566 Nramp: Natural resist 33.0 1.2E+02 0.0026 22.7 5.0 33 69-101 254-286 (358)
73 PF06939 DUF1286: Protein of u 32.7 65 0.0014 20.5 2.9 17 15-31 66-82 (114)
74 PF13150 DUF3989: Protein of u 32.2 1.2E+02 0.0025 18.2 4.8 27 88-114 42-69 (85)
75 PF03845 Spore_permease: Spore 30.4 2.2E+02 0.0047 20.8 9.9 41 9-50 200-240 (320)
76 COG3064 TolA Membrane protein 30.1 79 0.0017 24.0 3.4 29 12-40 6-34 (387)
77 KOG1304|consensus 30.1 62 0.0013 25.6 3.0 30 8-38 265-297 (449)
78 cd00927 Cyt_c_Oxidase_VIc Cyto 29.2 68 0.0015 18.6 2.4 20 14-33 16-35 (70)
79 PF12955 DUF3844: Domain of un 29.2 1.2E+02 0.0027 18.9 3.7 37 13-49 62-98 (103)
80 KOG4505|consensus 27.9 2.7E+02 0.0058 21.7 5.9 44 73-116 245-288 (467)
81 PHA03164 hypothetical protein; 26.6 78 0.0017 18.7 2.3 30 8-37 49-78 (88)
82 PF05399 EVI2A: Ectropic viral 26.6 1.2E+02 0.0027 21.6 3.7 28 16-43 125-152 (227)
83 PF14654 Epiglycanin_C: Mucin, 23.5 2E+02 0.0042 17.9 4.6 37 7-43 6-42 (106)
84 TIGR00782 ccoP cytochrome c ox 23.5 1.2E+02 0.0026 22.1 3.4 27 8-37 20-46 (285)
85 COG3197 FixS Uncharacterized p 23.5 1.2E+02 0.0025 17.0 2.5 14 17-30 8-21 (58)
86 PF03994 DUF350: Domain of Unk 23.1 1.2E+02 0.0026 16.0 2.6 24 4-29 22-45 (54)
87 KOG4152|consensus 22.1 39 0.00084 27.6 0.6 15 6-20 155-169 (830)
88 KOG1305|consensus 22.0 1.1E+02 0.0023 23.9 3.0 33 6-38 216-249 (411)
89 COG3695 Predicted methylated D 21.3 67 0.0015 20.1 1.5 25 91-118 41-65 (103)
90 PHA02819 hypothetical protein; 21.2 1.9E+02 0.004 16.8 3.3 20 11-30 34-53 (71)
91 PF15179 Myc_target_1: Myc tar 20.6 1.5E+02 0.0033 20.6 3.2 7 27-33 35-41 (197)
92 PF02937 COX6C: Cytochrome c o 20.5 90 0.002 18.2 1.8 12 17-28 17-28 (73)
93 PF13807 GNVR: G-rich domain o 20.1 1.9E+02 0.0042 16.6 3.8 8 6-13 43-50 (82)
No 1
>KOG1289|consensus
Probab=99.85 E-value=1.9e-21 Score=149.18 Aligned_cols=115 Identities=19% Similarity=0.182 Sum_probs=92.7
Q ss_pred CCCCccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcCh--H-HHhhhhcccchhhHHHhhcchhhHHHHHHHHH
Q psy13614 2 AGSNRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDN--L-LLRDKFGQSIGGRLVVANIAWPNEWVILIGSF 78 (118)
Q Consensus 2 ~~~~~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~--~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (118)
+.+|++||+|||+|+.||||+.++.++.++.+++++.+.+++++ + .++++.++|+.+.+... .+.-+...+....+
T Consensus 270 a~~H~aEE~~nAsk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~~~v~ns~~g~p~~~i~~~~-lg~k~~v~~~~l~i 348 (550)
T KOG1289|consen 270 AAAHMAEETKNASKAAPRGIISSIAIGFILGWIIIIGIAYTIPDDLDAVLNSSLGQPIVQIYYQA-LGKKGAVFLLSLII 348 (550)
T ss_pred chHHHHHHhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHhcCCCCChHHHHHHHh-cCCCceEehhHHHH
Confidence 57899999999999999999999999999999999999999973 2 33445567765433211 11112234555567
Q ss_pred HHHHHHHHHHhhhHHHHHHHhhcCCCccCCCCCCCCCCC
Q psy13614 79 LSTIGAGLQSLTGAPRLLQQGPKSDIIRTEDNRLKPGSQ 117 (118)
Q Consensus 79 ~~~~~~~~~~~~~~sR~~~a~ardg~lP~~~~~~k~~~~ 117 (118)
++.+.++.+++.+.||+.|+.||||.||++++++|+||+
T Consensus 349 i~~f~~gi~s~~a~SR~v~afaRDg~LP~S~~~~~v~~~ 387 (550)
T KOG1289|consen 349 IALFFMGISSLTASSRLVYAFARDGGLPFSKYLAKVNPQ 387 (550)
T ss_pred HHHHHhhHHHHHHHHHHHhhhhccCCCCCcceeeecCCC
Confidence 778888999999999999999999999999999999998
No 2
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=99.83 E-value=1.2e-20 Score=147.64 Aligned_cols=109 Identities=15% Similarity=0.299 Sum_probs=88.9
Q ss_pred CCCccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhhhhcccchhhHHHhhcch-hhHHHHHHHHHHHH
Q psy13614 3 GSNRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDKFGQSIGGRLVVANIAW-PNEWVILIGSFLST 81 (118)
Q Consensus 3 ~~~~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 81 (118)
.++++||+|||+||+|||++.++.+++++|+++++++.+++|+++++.+. +.. .++...++ ....++.++++++.
T Consensus 250 v~~~aeE~knP~r~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~--p~~--~a~~~~g~~~~~~ii~~~~~~~~ 325 (557)
T TIGR00906 250 IATTGEEVKNPQRAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDA--PFP--VAFEYVGWGPAKYIVAVGALCGM 325 (557)
T ss_pred HHHhHHhccCccccccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCc--HHH--HHHHHcCchHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999988765322 221 12222221 23456778888889
Q ss_pred HHHHHHHhhhHHHHHHHhhcCCCccCCCCCCCCCCC
Q psy13614 82 IGAGLQSLTGAPRLLQQGPKSDIIRTEDNRLKPGSQ 117 (118)
Q Consensus 82 ~~~~~~~~~~~sR~~~a~ardg~lP~~~~~~k~~~~ 117 (118)
+++.++.+++.+|++|+|||||.+|+ +|+|+|+|
T Consensus 326 ~~sl~~~~~~~sRil~amarDGlLP~--~fakv~~r 359 (557)
T TIGR00906 326 STSLLGGMFPLPRVIYAMARDGLLFK--WLAQINSK 359 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCccH--HHhccCCC
Confidence 99999999999999999999999995 59999976
No 3
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=99.83 E-value=3e-20 Score=142.80 Aligned_cols=113 Identities=12% Similarity=0.019 Sum_probs=83.9
Q ss_pred CCCCccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcCh-HH-HhhhhcccchhhHHHhhcchhhHHHHHHHHHH
Q psy13614 2 AGSNRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDN-LL-LRDKFGQSIGGRLVVANIAWPNEWVILIGSFL 79 (118)
Q Consensus 2 ~~~~~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~-~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (118)
+.+|++||+|||+|++|||++.++.+++++|+++.+....+.+. +. ..++.+.+.......+. ..+ ..+...+++
T Consensus 231 ~~~~~aeE~knP~r~iPrai~~s~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~--~~~-~~~~~~~~i 307 (475)
T TIGR03428 231 SAGELSEETKNPRRVAPRTILTALSVSALGGGLMILGALMAAPSLTDGRLAAEGLPYVLSAVLDS--PWG-TVLLVDVAI 307 (475)
T ss_pred hHHHHHHHhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHhhcCCCchHHHHHHHhCc--HhH-HHHHHHHHH
Confidence 45789999999999999999999999999999998888877654 21 11122222111111111 112 234455567
Q ss_pred HHHHHHHHHhhhHHHHHHHhhcCCCccCCCCCCCCCCC
Q psy13614 80 STIGAGLQSLTGAPRLLQQGPKSDIIRTEDNRLKPGSQ 117 (118)
Q Consensus 80 ~~~~~~~~~~~~~sR~~~a~ardg~lP~~~~~~k~~~~ 117 (118)
+.+++.++.+.+.+|++|+|||||.+|++++|+|+|+|
T Consensus 308 ~~~~~~~~~~~~~sR~~~a~Ardg~lP~s~~~~~v~~r 345 (475)
T TIGR03428 308 AILVCTLAIQTAGSRLMFSMARDGKLPASAQLSRVHPR 345 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcchHHhcccCCC
Confidence 88899999999999999999999999998899999976
No 4
>TIGR00930 2a30 K-Cl cotransporter.
Probab=99.82 E-value=1.7e-20 Score=153.64 Aligned_cols=116 Identities=39% Similarity=0.449 Sum_probs=90.5
Q ss_pred CCCCccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhhhhcccch---------------------hhH
Q psy13614 2 AGSNRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDKFGQSIG---------------------GRL 60 (118)
Q Consensus 2 ~~~~~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~~~~~~~~---------------------~~~ 60 (118)
++++++||+|||+|++|||++.++.+++++|+++++++..+.+.+.+......... ..+
T Consensus 298 agan~sgElKnP~r~IPratl~ai~i~~vlYllv~~~~~~~~~~d~~~~~~~~l~~~~~g~~~f~~~~~~p~~~gL~~~~ 377 (953)
T TIGR00930 298 AGANISGDLKDPQKAIPKGTLLAILTTTVVYLGSVVLFGACVVRDATGDKNDTLVTNCTSAACFSECAHNTCSYGLMNNL 377 (953)
T ss_pred HHHHHHHhccChhhhhHHHHHHHHHHHHHHHHHHHHHHHccccHhhhcccchhhhcccccchhhhhhcccchhhhhcchH
Confidence 56889999999999999999999999999999999988888776543221100000 111
Q ss_pred HHhhcchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcCCCccCCCCCCCCCCC
Q psy13614 61 VVANIAWPNEWVILIGSFLSTIGAGLQSLTGAPRLLQQGPKSDIIRTEDNRLKPGSQ 117 (118)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~a~ardg~lP~~~~~~k~~~~ 117 (118)
......+...+++.++++++++++.++++++.+|++|+|||||.+|+.++|+|+|+|
T Consensus 378 ~~~~~~~~~~~lI~ig~~~stlss~la~l~~asRvl~AmArDg~lP~l~~fakv~~k 434 (953)
T TIGR00930 378 QVMSLVSPFPPLITAGIFSATLSSALASLVSAPRLFQALCKDNIYPFLQFFGKGYGK 434 (953)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhcccCCC
Confidence 111122223467888999999999999999999999999999999988899999976
No 5
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=99.82 E-value=5.3e-20 Score=141.48 Aligned_cols=114 Identities=10% Similarity=0.075 Sum_probs=84.0
Q ss_pred CCCCccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcC-hHHHhh-hhcccchhhH--HHhhcchhhHHHHHHHH
Q psy13614 2 AGSNRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVD-NLLLRD-KFGQSIGGRL--VVANIAWPNEWVILIGS 77 (118)
Q Consensus 2 ~~~~~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~-~~~l~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 77 (118)
..++++||+|||+|++|||++.++.+..++|+++.+......+ .+.+.+ +.+.|..... ..+. .+ +..++...+
T Consensus 235 ~~~~~a~E~knP~r~iP~Ai~~s~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~-~~-~~~~~~~~~ 312 (482)
T TIGR00907 235 GTAHMAEEIENPEVVGPRAIIGAVAIGIVTGFCFNIVLFFSMGDIDSLISSTTGQPIAQIFYNALGN-KA-GAIFLLCLI 312 (482)
T ss_pred hhhHHHHhcCChhhhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhcCCCCChHHHHHHHHhCC-ch-HHHHHHHHH
Confidence 4578999999999999999999999888877776666555553 343432 2223332211 1111 12 233556666
Q ss_pred HHHHHHHHHHHhhhHHHHHHHhhcCCCccCCCCCCCCCCC
Q psy13614 78 FLSTIGAGLQSLTGAPRLLQQGPKSDIIRTEDNRLKPGSQ 117 (118)
Q Consensus 78 ~~~~~~~~~~~~~~~sR~~~a~ardg~lP~~~~~~k~~~~ 117 (118)
+++.+++.++.+++.||++|+|||||.+|++++|+|+|+|
T Consensus 313 ~~~~~~~~~~~~~~~sR~l~a~ardg~lP~~~~f~~v~~~ 352 (482)
T TIGR00907 313 LVTSFFCAITCMTANSRMIYAFSRDGGLPFSPLWSRVNPR 352 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcCchHhhceeCCC
Confidence 7888899999999999999999999999988889999987
No 6
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=99.82 E-value=2.4e-20 Score=142.20 Aligned_cols=112 Identities=14% Similarity=0.164 Sum_probs=86.8
Q ss_pred CCCccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhhhhcccchhhH-HHhhcchhhHHHHHHHHHHHH
Q psy13614 3 GSNRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDKFGQSIGGRL-VVANIAWPNEWVILIGSFLST 81 (118)
Q Consensus 3 ~~~~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 81 (118)
.++++||+|||+||+|||++.++.+++++|++.+++.....+.+++.++.. +..... .....+.....++.+..+++.
T Consensus 214 ~~~~a~E~k~P~r~iP~Ai~~~~~i~~~~Y~l~~~~~~~~~~~~~l~~~~~-p~~~~~~~~~~~g~~~~~~~~~~~~~~~ 292 (445)
T PRK11357 214 ICYMTGEIKNPGKTMPRALIGSCLLVLVLYTLLALVISGLMPFDKLANSET-PISDALTWIPALGSTAGIFVAITAMIVI 292 (445)
T ss_pred HHhhHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcCCc-hHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999888888887765332 221111 111111112345666677788
Q ss_pred HHHHHHHhhhHHHHHHHhhcCCCccCCCCCCCCCCC
Q psy13614 82 IGAGLQSLTGAPRLLQQGPKSDIIRTEDNRLKPGSQ 117 (118)
Q Consensus 82 ~~~~~~~~~~~sR~~~a~ardg~lP~~~~~~k~~~~ 117 (118)
+++.++.+.+.+|++|+|+|||.+|+ +|+|+|+|
T Consensus 293 ~~~~~~~~~~~sR~~~a~ardg~lp~--~~~~v~~~ 326 (445)
T PRK11357 293 LGSLSSCVMYQPRLEYAMAKDNLFFK--CFGHVHPK 326 (445)
T ss_pred HHHHHHHHHhhhhHHHHHHhcCCchH--HHHHhCCC
Confidence 89999999999999999999999995 59999976
No 7
>PRK10655 potE putrescine transporter; Provisional
Probab=99.82 E-value=5.5e-20 Score=139.90 Aligned_cols=112 Identities=13% Similarity=0.188 Sum_probs=87.9
Q ss_pred CCCCccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhhhhcccchhhHHHhhc-chhhHHHHHHHHHHH
Q psy13614 2 AGSNRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDKFGQSIGGRLVVANI-AWPNEWVILIGSFLS 80 (118)
Q Consensus 2 ~~~~~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 80 (118)
+.++++||+|||+||+|||++.++.++.++|++.+.+..+..|++++.++.. +... ...+. +.....++.++.+++
T Consensus 207 ~~~~~a~E~k~P~r~iPrAi~~~~~~~~~~Y~l~~~~~~~~~~~~~l~~~~~-p~~~--~~~~~~g~~~~~~~~~~~~is 283 (438)
T PRK10655 207 SACANSDAVENPERNVPIAVLGGTLGAAVIYIVSTNVIAGIVPNMELANSTA-PFGL--AFAQMFNPTVGKIVMALMVMS 283 (438)
T ss_pred hhhhhHHHhhCccccccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhhccc-hHHH--HHHHHcChhHHHHHHHHHHHH
Confidence 4578999999999999999999999999999999998888888877754322 2211 11111 111234566677788
Q ss_pred HHHHHHHHhhhHHHHHHHhhcCCCccCCCCCCCCCCCC
Q psy13614 81 TIGAGLQSLTGAPRLLQQGPKSDIIRTEDNRLKPGSQG 118 (118)
Q Consensus 81 ~~~~~~~~~~~~sR~~~a~ardg~lP~~~~~~k~~~~~ 118 (118)
.+++.++.+++.+|++|+|+|||.+|+ +|+|+|++|
T Consensus 284 ~~~~~~~~~~~~sR~~~~~a~dg~lP~--~~~~v~~~~ 319 (438)
T PRK10655 284 CCGSLLGWQFTIAQVFKSSADEGYFPK--IFSRVTKVD 319 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCchhH--HHHhhCcCC
Confidence 999999999999999999999999995 599999764
No 8
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=99.82 E-value=4.7e-20 Score=140.66 Aligned_cols=111 Identities=14% Similarity=0.165 Sum_probs=87.4
Q ss_pred CCCccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhhhhcccchhhHHHhh-cchhhHHHHHHHHHHHH
Q psy13614 3 GSNRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDKFGQSIGGRLVVAN-IAWPNEWVILIGSFLST 81 (118)
Q Consensus 3 ~~~~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 81 (118)
.+|++||+|||+|++|||++.++.+++++|++.++++.++++++++..+. .|... +..+ .+..+..++.++.+++.
T Consensus 210 ~~~~aeE~k~P~r~iPrai~~s~~i~~v~Y~l~~~~~~~~~~~~~l~~~~-~p~~~--~~~~~~g~~~~~~v~~~~~~s~ 286 (445)
T PRK10644 210 ASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSSTAIMGMIPNAALRVSA-SPFGD--AARMALGDTAGAIVSFCAAAGC 286 (445)
T ss_pred HHHHHHHhhCcccchhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhcCC-ChHHH--HHHHHhhhHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999988775432 23211 1111 11112345666777888
Q ss_pred HHHHHHHhhhHHHHHHHhhcCCCccCCCCCCCCCCCC
Q psy13614 82 IGAGLQSLTGAPRLLQQGPKSDIIRTEDNRLKPGSQG 118 (118)
Q Consensus 82 ~~~~~~~~~~~sR~~~a~ardg~lP~~~~~~k~~~~~ 118 (118)
+++.++.+...+|+.|+|+|||.+|+ +|+|+|++|
T Consensus 287 ~~~~~~~~~~~sr~~~a~ardg~lP~--~~~~v~~~~ 321 (445)
T PRK10644 287 LGSLGGWTLLAGQTAKAAADDGLFPP--IFARVNKAG 321 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCccH--HHHhhCcCC
Confidence 88888899999999999999999994 599999764
No 9
>PRK15049 L-asparagine permease; Provisional
Probab=99.81 E-value=4.5e-20 Score=142.84 Aligned_cols=111 Identities=13% Similarity=0.087 Sum_probs=88.8
Q ss_pred CCCccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhhhhcccchhhHHHhhcch-hhHHHHHHHHHHHH
Q psy13614 3 GSNRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDKFGQSIGGRLVVANIAW-PNEWVILIGSFLST 81 (118)
Q Consensus 3 ~~~~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 81 (118)
.++++||+|||+|++|||++.++....++|++..++....+|++++... +.|... .+...+. ....++.+.++++.
T Consensus 239 i~~~aeE~knP~r~iPrAi~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~-~sP~~~--~~~~~g~~~~~~ii~~~ilia~ 315 (499)
T PRK15049 239 VGTAAGECKDPQTMVPKAINSVIWRIGLFYVGSVVLLVMLLPWSAYQAG-QSPFVT--FFSKLGVPYIGSIMNIVVLTAA 315 (499)
T ss_pred HHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecchhccCcC-CCHHHH--HHHHcCchhHHHHHHHHHHHHH
Confidence 4688999999999999999999999999999999999999988766432 223211 1222221 12346777788999
Q ss_pred HHHHHHHhhhHHHHHHHhhcCCCccCCCCCCCCCCCC
Q psy13614 82 IGAGLQSLTGAPRLLQQGPKSDIIRTEDNRLKPGSQG 118 (118)
Q Consensus 82 ~~~~~~~~~~~sR~~~a~ardg~lP~~~~~~k~~~~~ 118 (118)
+++.++.+++.+|++|+|||||.+| ++|+|+|++|
T Consensus 316 ~ss~ns~~~~~sR~l~a~Ardg~lP--~~f~kv~k~~ 350 (499)
T PRK15049 316 LSSLNSGLYCTGRILRSMAMGGSAP--SFMAKMSRQH 350 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcC--HHHHHhCCCC
Confidence 9999999999999999999999999 5599999765
No 10
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=99.81 E-value=1.1e-19 Score=138.48 Aligned_cols=112 Identities=7% Similarity=0.062 Sum_probs=88.6
Q ss_pred CCCccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhhhhcccchhhHHHhhcchhhHHHHHHHHHHHHH
Q psy13614 3 GSNRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDKFGQSIGGRLVVANIAWPNEWVILIGSFLSTI 82 (118)
Q Consensus 3 ~~~~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (118)
.++++||+|||+||+|||++.++.++.++|++.+++....+|++++.... .|...........| +..++.++++++.+
T Consensus 206 ~~~~a~E~knP~r~iPrAi~~~~~iv~ilYil~~~~~~~~~p~~~~~~~~-~p~~~~~~~~~g~~-~~~~i~~~~~i~~l 283 (435)
T PRK10435 206 AAVSTGMVKNPKRTVPLATMLGTGLAGIIYIAATQVISGMFPASVMAASG-APFAISASTILGNW-AAPLVSAFTAFACL 283 (435)
T ss_pred HHHHHHHhhCccccccHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcCC-CcHHHHHHHHhchh-HHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999998875432 23221111001112 33456666778889
Q ss_pred HHHHHHhhhHHHHHHHhhcCCCccCCCCCCCCCCCC
Q psy13614 83 GAGLQSLTGAPRLLQQGPKSDIIRTEDNRLKPGSQG 118 (118)
Q Consensus 83 ~~~~~~~~~~sR~~~a~ardg~lP~~~~~~k~~~~~ 118 (118)
++.++.++..+|..++|||||.+|+. |+|+||+|
T Consensus 284 ~~~~~~~~~~~r~~~~~ardG~lP~~--f~k~nk~g 317 (435)
T PRK10435 284 TSLGSWMMLVGQAGVRAANDGNFPKV--YGEVDKNG 317 (435)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCccHH--HHhhCcCC
Confidence 99999999999999999999999965 99999875
No 11
>PRK11021 putative transporter; Provisional
Probab=99.81 E-value=1e-19 Score=137.45 Aligned_cols=112 Identities=13% Similarity=0.190 Sum_probs=83.5
Q ss_pred CCCCccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhhhhcccchhhHHHhhc-chhhHHHHHHHHHHH
Q psy13614 2 AGSNRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDKFGQSIGGRLVVANI-AWPNEWVILIGSFLS 80 (118)
Q Consensus 2 ~~~~~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 80 (118)
..++++||+|||+||+|||++.++.++.++|++.+++.....++++... .+.+.. ....+. +..+.+++.+..+++
T Consensus 195 ~~~~~a~E~k~P~k~iPrAi~~~~~~~~~lYil~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~G~~~~~ii~i~~~~s 271 (410)
T PRK11021 195 AFAHLASEFKNPERDFPRALMIGLLLAGLVYWACTVVVLHFPAYGDKQA-AAASLP--GIFVQLFGGYALWVICVIGYLA 271 (410)
T ss_pred HHHhhHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhh-ccccHH--HHHHHHhCchhHHHHHHHHHHH
Confidence 3568999999999999999999999999999999988766655433321 112211 111111 111234566666788
Q ss_pred HHHHHHHHhhhHHHHHHHhhcCCCccCCCCCCCCCCCC
Q psy13614 81 TIGAGLQSLTGAPRLLQQGPKSDIIRTEDNRLKPGSQG 118 (118)
Q Consensus 81 ~~~~~~~~~~~~sR~~~a~ardg~lP~~~~~~k~~~~~ 118 (118)
.+++.++.+.+.+|++|+|+|||.+|+ +|+|+|++|
T Consensus 272 ~~~~~~~~~~~~sR~l~a~ardg~lP~--~~~k~~~~~ 307 (410)
T PRK11021 272 CFASVNIYTQSFARLVWSQAREGRPPS--YLARLSARG 307 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCccH--HHHhhccCC
Confidence 899999999999999999999999994 599999764
No 12
>PRK11387 S-methylmethionine transporter; Provisional
Probab=99.80 E-value=3.8e-20 Score=142.13 Aligned_cols=111 Identities=13% Similarity=0.109 Sum_probs=87.6
Q ss_pred CCCccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhhhhcccchhhHHHhhcc-hhhHHHHHHHHHHHH
Q psy13614 3 GSNRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDKFGQSIGGRLVVANIA-WPNEWVILIGSFLST 81 (118)
Q Consensus 3 ~~~~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 81 (118)
.++++||+|||+||+|||++.++.++.++|++.++++..+.|.+++..+. .|.. .+....+ ..+..++.++++++.
T Consensus 225 ~~~~a~E~knP~r~iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~~~~~~-~p~~--~~~~~~g~~~~~~ii~~~~~~s~ 301 (471)
T PRK11387 225 IGIAAGETENPAKVIPVAIRTTIARLVIFFVGTVLVLAALIPMQQAGVEK-SPFV--LVFEKVGIPYAADIFNFVILTAI 301 (471)
T ss_pred HHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecCccccCccC-ChHH--HHHHHcCCchHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999998888876554222 2221 1122222 123346777788899
Q ss_pred HHHHHHHhhhHHHHHHHhhcCCCccCCCCCCCCCCCC
Q psy13614 82 IGAGLQSLTGAPRLLQQGPKSDIIRTEDNRLKPGSQG 118 (118)
Q Consensus 82 ~~~~~~~~~~~sR~~~a~ardg~lP~~~~~~k~~~~~ 118 (118)
+++.++++++.+|++|+|||||.+|+ +|+|+|++|
T Consensus 302 ~~~~~~~~~~~sR~l~a~ardg~lP~--~f~~~~~~~ 336 (471)
T PRK11387 302 LSAANSGLYASGRMLWSLSNEGTLPA--CFARLTKRG 336 (471)
T ss_pred HHHHHHHHHHhhHHHHHHHhcCCcCH--HHHHhCCCC
Confidence 99999999999999999999999994 599999764
No 13
>PRK10836 lysine transporter; Provisional
Probab=99.80 E-value=1.2e-19 Score=140.08 Aligned_cols=112 Identities=13% Similarity=0.117 Sum_probs=86.3
Q ss_pred CCCccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHh---hhh----cccchhhHHHhhcch-hhHHHHH
Q psy13614 3 GSNRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLR---DKF----GQSIGGRLVVANIAW-PNEWVIL 74 (118)
Q Consensus 3 ~~~~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~---~~~----~~~~~~~~~~~~~~~-~~~~~~~ 74 (118)
.++++||+|||+||+|||++.++.++.++|++..+++...+|.++.. ++. ..|. ...++..+. ....++.
T Consensus 224 ~~~~a~E~knP~r~iPrAi~~~~~~v~~~Yvl~~~~~~~~vp~~~~~~~~~~~~~~~~sp~--~~~~~~~g~~~~~~ii~ 301 (489)
T PRK10836 224 IGIAAGESEDPAKNIPRAVRQVFWRILLFYVFAILIISLIIPYTDPSLLRNDVKDISVSPF--TLVFQHAGLLSAAAVMN 301 (489)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHheecCCCChhhhccccccccCCcH--HHHHHHcCChhHHHHHH
Confidence 46789999999999999999999999999999999988888764322 111 1111 112222221 2234667
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhhcCCCccCCCCCCCCCCCC
Q psy13614 75 IGSFLSTIGAGLQSLTGAPRLLQQGPKSDIIRTEDNRLKPGSQG 118 (118)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~sR~~~a~ardg~lP~~~~~~k~~~~~ 118 (118)
+.++++.+++.++.+++.+|++|+|||||.+|+ +|+|+|++|
T Consensus 302 ~~il~a~~~~~n~~~~~~sR~l~a~Ardg~lP~--~~~kv~~~~ 343 (489)
T PRK10836 302 AVILTAVLSAGNSGMYASTRMLYTLACDGKAPR--IFAKLSRGG 343 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCH--HHHhhCCCC
Confidence 777889999999999999999999999999994 599999765
No 14
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=99.80 E-value=1.1e-19 Score=138.68 Aligned_cols=112 Identities=12% Similarity=0.034 Sum_probs=84.6
Q ss_pred CCCccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhhhhcccchhhHHHhhcc-hhhHHHHHHHHHHHH
Q psy13614 3 GSNRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDKFGQSIGGRLVVANIA-WPNEWVILIGSFLST 81 (118)
Q Consensus 3 ~~~~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 81 (118)
.+|++||+|||+|++|||+..++....++|++..+.....+|++.....+..+... .....+ ..+..++.+.++++.
T Consensus 220 ~~~~a~E~k~P~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~p~~~~~~~~~~p~~~--~~~~~g~~~~~~ii~~~~~~~~ 297 (452)
T TIGR01773 220 VTIAAAESSNPIKSITRATNSVIWRIIVFYLGSIFIVVALLPWNSPNLLEVGSYVA--VLELLGIPHAKLIMDFVVLTAV 297 (452)
T ss_pred HhHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHeeEeCCCCcccccCCcHHH--HHHHcCChhHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999888777776654332211112211 112221 123456667778889
Q ss_pred HHHHHHHhhhHHHHHHHhhcCCCccCCCCCCCCCCCC
Q psy13614 82 IGAGLQSLTGAPRLLQQGPKSDIIRTEDNRLKPGSQG 118 (118)
Q Consensus 82 ~~~~~~~~~~~sR~~~a~ardg~lP~~~~~~k~~~~~ 118 (118)
+++.++.+++.+|++|+|||||.+| ++|+|+|++|
T Consensus 298 ~~~~~~~~~~~sR~~~a~ardg~lP--~~~~~v~~~~ 332 (452)
T TIGR01773 298 LSCLNSALYTTSRMLYSLAERGDAP--RVFMKLNKKG 332 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcC--HHHHhhCCCC
Confidence 9999999999999999999999999 5599999764
No 15
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=99.79 E-value=2.4e-19 Score=138.58 Aligned_cols=110 Identities=14% Similarity=0.133 Sum_probs=87.1
Q ss_pred CCCccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhhhhcccchhhHHHhhcchhhHHHHHHHHHHHHH
Q psy13614 3 GSNRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDKFGQSIGGRLVVANIAWPNEWVILIGSFLSTI 82 (118)
Q Consensus 3 ~~~~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (118)
.++++||+|||+|++|||++.++.+++++|++.++++...++.+++..+... .........++ ..+++.+.+.++.+
T Consensus 254 ~~~~a~E~knP~r~iPrAi~~s~~~v~~~Y~l~~~a~~~~~~~~~l~~~~~~--~~~~~~~~~g~-~~~~i~~~~~is~~ 330 (501)
T TIGR00911 254 LNFVTEEVKNPYRTLPIAIIISMPIVTFIYVLTNIAYFTVLSPEELLASLAV--AVDFGERLLGV-MSWAMPALVGLSCF 330 (501)
T ss_pred HhhhHHHhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcChHH--HHHHHHHHhhh-HHHHHHHHHHHHHH
Confidence 5689999999999999999999999999999999999988888777543211 11111111112 23456667778899
Q ss_pred HHHHHHhhhHHHHHHHhhcCCCccCCCCCCCCCCC
Q psy13614 83 GAGLQSLTGAPRLLQQGPKSDIIRTEDNRLKPGSQ 117 (118)
Q Consensus 83 ~~~~~~~~~~sR~~~a~ardg~lP~~~~~~k~~~~ 117 (118)
++.++.+++.+|++|+|||||.+|+. |+|+|+|
T Consensus 331 ~~~~~~~~~~sR~l~a~ardg~lP~~--~~~v~~~ 363 (501)
T TIGR00911 331 GSVNGSLFSSSRLFFVGGREGHLPSL--LSMIHVK 363 (501)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCccHH--HHHhcCC
Confidence 99999999999999999999999975 9999976
No 16
>KOG1286|consensus
Probab=99.79 E-value=1.2e-19 Score=141.61 Aligned_cols=111 Identities=14% Similarity=0.178 Sum_probs=91.5
Q ss_pred CCccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHH--HhhhhcccchhhHHHh-hcchh--hHHHHHHHHH
Q psy13614 4 SNRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLL--LRDKFGQSIGGRLVVA-NIAWP--NEWVILIGSF 78 (118)
Q Consensus 4 ~~~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~ 78 (118)
+..+||+|||+|++|+|+..++.++.++|++..+.++.++|+++ |..+. +...++..+ +..+. ...++.++++
T Consensus 252 a~~a~E~kNP~k~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~--~~~spF~iai~~~~~k~~~~ivna~iL 329 (554)
T KOG1286|consen 252 ATTAEEAKNPRKAIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGA--ALASPFVIAIGNAGAKYLPHIVNAGIL 329 (554)
T ss_pred HHHHHhccCCcccccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCC--ccccHHHHHHhccCccccchhhhHHHH
Confidence 45689999999999999999999999999999999999999976 55433 333444322 11121 1238899999
Q ss_pred HHHHHHHHHHhhhHHHHHHHhhcCCCccCCCCCCCCCCCC
Q psy13614 79 LSTIGAGLQSLTGAPRLLQQGPKSDIIRTEDNRLKPGSQG 118 (118)
Q Consensus 79 ~~~~~~~~~~~~~~sR~~~a~ardg~lP~~~~~~k~~~~~ 118 (118)
++..+++|++++..||.+|+||+||++|++ |+++|++|
T Consensus 330 ~~~~s~~n~~~y~~sR~l~amA~~G~~Pk~--f~~v~~~g 367 (554)
T KOG1286|consen 330 IGLLSSLNSSLYAGSRVLYALAKDGLAPKF--FARVDRRG 367 (554)
T ss_pred HHHHHHHHHHhHHhHHHHHHHHhcCCcchH--HhhcCCCC
Confidence 999999999999999999999999999987 99999985
No 17
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=99.79 E-value=1.3e-19 Score=139.21 Aligned_cols=112 Identities=15% Similarity=0.108 Sum_probs=85.7
Q ss_pred CCCccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHH--Hhhhh------cccchhhHHHhhcc-hhhHHHH
Q psy13614 3 GSNRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLL--LRDKF------GQSIGGRLVVANIA-WPNEWVI 73 (118)
Q Consensus 3 ~~~~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~--l~~~~------~~~~~~~~~~~~~~-~~~~~~~ 73 (118)
.++++||+|||+||+|||++.++.++.++|++..+++..++|+++ +.++. +.|.. ......+ .....++
T Consensus 216 ~~~~a~E~knP~r~iPrai~~~~~~~~~~Y~l~~~~~~~~~p~~~~~l~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~~ 293 (478)
T TIGR00913 216 VALTAGEAANPRKSIPRAAKRTFWRILVFYILTLFLIGFLVPYNDPRLLSSSSSSDSAASPFV--IAIQNHGIKVLPHIF 293 (478)
T ss_pred HHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHheeeccCCChhhcccccCCCcCCCcHH--HHHHHcCCchHhHHH
Confidence 468899999999999999999999999999999888888877543 32211 12221 1112111 1233467
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHhhcCCCccCCCCCCCCCCCC
Q psy13614 74 LIGSFLSTIGAGLQSLTGAPRLLQQGPKSDIIRTEDNRLKPGSQG 118 (118)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~sR~~~a~ardg~lP~~~~~~k~~~~~ 118 (118)
.+.++++.+++.++.+++.+|++|+|||||.+|+ +|+|+|++|
T Consensus 294 ~~~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~--~f~k~~~~~ 336 (478)
T TIGR00913 294 NAVILISVLSAANSSLYASSRTLYALAHQGLAPK--IFAYVDRRG 336 (478)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhCCcccH--HHHhhCCCC
Confidence 7777889999999999999999999999999994 599999765
No 18
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=99.79 E-value=3.9e-19 Score=136.61 Aligned_cols=113 Identities=11% Similarity=0.106 Sum_probs=84.2
Q ss_pred CCCccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhhhhcccchhhHHHhhc--chhhHHHHHHHHHHH
Q psy13614 3 GSNRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDKFGQSIGGRLVVANI--AWPNEWVILIGSFLS 80 (118)
Q Consensus 3 ~~~~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 80 (118)
.+..+||+|||+|++|||++.++.++.++|++.++++.+++|++++..++..........+.. .+. ..++.+...++
T Consensus 213 ~~~~a~E~knP~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~i~~~~~~~~ 291 (474)
T TIGR03813 213 NAVHVKDVDNPDKNYPIAILIAALGTVLIFVLGTLAIAFIIPREDISLTQSLLVAFDNAFHWAGLSWL-GPILAFALAIG 291 (474)
T ss_pred hHHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhccCHhhccccccHHHHHHHHHHHcCchHH-HHHHHHHHHHH
Confidence 456789999999999999999999999999999999999998876543221100001111111 122 23455556677
Q ss_pred HHHHHHHHhhhHHHHHHHhhcCCCccCCCCCCCCCCCC
Q psy13614 81 TIGAGLQSLTGAPRLLQQGPKSDIIRTEDNRLKPGSQG 118 (118)
Q Consensus 81 ~~~~~~~~~~~~sR~~~a~ardg~lP~~~~~~k~~~~~ 118 (118)
.+++.++.+.+.+|++|+++|||.+| ++|+|+|++|
T Consensus 292 ~l~~~~~~~~~~sR~~~a~ardg~lP--~~~~kv~k~~ 327 (474)
T TIGR03813 292 VLAGVVTWVAGPSSGMLAVAKAGYLP--TFFQKTNKNG 327 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCC--HHHhccCCCC
Confidence 88888888999999999999999999 4599999765
No 19
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=99.79 E-value=2.1e-19 Score=137.32 Aligned_cols=112 Identities=14% Similarity=0.031 Sum_probs=86.1
Q ss_pred CCCccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhhhhcccchhhHHHhhcc-hhhHHHHHHHHHHHH
Q psy13614 3 GSNRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDKFGQSIGGRLVVANIA-WPNEWVILIGSFLST 81 (118)
Q Consensus 3 ~~~~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 81 (118)
.++.+||+|||+||+|||++.++....++|++..++....+|+++.+.+...+.. ......+ ..+..++.+.++++.
T Consensus 200 ~~~~a~E~knP~r~iPrai~~~~~~i~i~Yil~~~~~~~~~p~~~~~~~~~~~~~--~~~~~~g~~~~~~ii~~~i~~~~ 277 (446)
T PRK10197 200 VTIAAAESDTPEKHIVRATNSVIWRISIFYLCSIFVVVALIPWNMPGLKAVGSYR--SVLELLNIPHAKLIMDCVILLSV 277 (446)
T ss_pred HHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHheecCcCcccccccCcHH--HHHHHcCchHHHHHHHHHHHHHH
Confidence 3578999999999999999999999999999999998888887643221111111 1112211 123456677778889
Q ss_pred HHHHHHHhhhHHHHHHHhhcCCCccCCCCCCCCCCCC
Q psy13614 82 IGAGLQSLTGAPRLLQQGPKSDIIRTEDNRLKPGSQG 118 (118)
Q Consensus 82 ~~~~~~~~~~~sR~~~a~ardg~lP~~~~~~k~~~~~ 118 (118)
+++.++.+++.+|++|+|||||.+|+ +|+|+|++|
T Consensus 278 ~~~~n~~~~~~sR~l~a~ardg~lP~--~~~~~~~~~ 312 (446)
T PRK10197 278 TSCLNSALYTASRMLYSLSRRGDAPA--VMGKINRSK 312 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCH--HHHhhCcCC
Confidence 99999999999999999999999995 599999765
No 20
>PRK10238 aromatic amino acid transporter; Provisional
Probab=99.79 E-value=2.1e-19 Score=137.63 Aligned_cols=111 Identities=9% Similarity=0.042 Sum_probs=86.0
Q ss_pred CCCccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhhhhcccchhhHHHhhcc-hhhHHHHHHHHHHHH
Q psy13614 3 GSNRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDKFGQSIGGRLVVANIA-WPNEWVILIGSFLST 81 (118)
Q Consensus 3 ~~~~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 81 (118)
.++++||+|||+|++|||++.++....++|+..........|++++..+ +.|... ...+.+ .....++...++++.
T Consensus 219 ~~~~aeE~knP~r~iPrAi~~~~~~i~~~y~~~~~~~~~~~p~~~l~~~-~sP~~~--~~~~~g~~~~~~i~~~~i~~~~ 295 (456)
T PRK10238 219 VGITAAEADNPEQSIPKATNQVIYRILIFYIGSLAVLLSLMPWTRVTAD-TSPFVL--IFHELGDTFVANALNIVVLTAA 295 (456)
T ss_pred HHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecChhccCCC-CCcHHH--HHHHcCChHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999988887777787766432 233321 122221 122345666777888
Q ss_pred HHHHHHHhhhHHHHHHHhhcCCCccCCCCCCCCCCCC
Q psy13614 82 IGAGLQSLTGAPRLLQQGPKSDIIRTEDNRLKPGSQG 118 (118)
Q Consensus 82 ~~~~~~~~~~~sR~~~a~ardg~lP~~~~~~k~~~~~ 118 (118)
+++.++.+++.||++|+|||||.+| ++|+|+|++|
T Consensus 296 ~s~~~~~~~~~sR~l~a~ardg~lP--~~f~kv~~~~ 330 (456)
T PRK10238 296 LSVYNSCVYCNSRMLFGLAQQGNAP--KALASVDKRG 330 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcc--HHHHhhCcCC
Confidence 9999999999999999999999999 5599999875
No 21
>PRK10249 phenylalanine transporter; Provisional
Probab=99.79 E-value=1.6e-19 Score=138.34 Aligned_cols=112 Identities=7% Similarity=0.035 Sum_probs=86.0
Q ss_pred CCCccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhhhhcccchhhHHHhhcchhhHHHHHHHHHHHHH
Q psy13614 3 GSNRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDKFGQSIGGRLVVANIAWPNEWVILIGSFLSTI 82 (118)
Q Consensus 3 ~~~~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (118)
.+|++||+|||+|++|||++.++....++|++..++...++|++++..+. .|...........+ ...++.+.++++.+
T Consensus 228 ~~~~a~E~~~P~k~iPrai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~~~~~-~~~~~~~~~~~a~~ 305 (458)
T PRK10249 228 IGITAAEARDPEKSIPKAVNQVVYRILLFYIGSLVVLLALYPWVEVKSNS-SPFVMIFHNLDSNV-VASALNFVILVASL 305 (458)
T ss_pred HHHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHHHHHheeccccccCccC-CcHHHHHHHcCchh-HHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999888888776554322 23211111111112 23455666778899
Q ss_pred HHHHHHhhhHHHHHHHhhcCCCccCCCCCCCCCCCC
Q psy13614 83 GAGLQSLTGAPRLLQQGPKSDIIRTEDNRLKPGSQG 118 (118)
Q Consensus 83 ~~~~~~~~~~sR~~~a~ardg~lP~~~~~~k~~~~~ 118 (118)
++.++.+++.+|++|+|||||.+| ++|+|+|++|
T Consensus 306 ~~~~~~~~~~sR~l~a~ardg~lP--~~~~kv~~~~ 339 (458)
T PRK10249 306 SVYNSGVYSNSRMLFGLSVQGNAP--KFLTRVSRRG 339 (458)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcC--HHHHHhCCCC
Confidence 999999999999999999999999 4599999765
No 22
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=99.78 E-value=4.9e-19 Score=134.83 Aligned_cols=112 Identities=15% Similarity=0.162 Sum_probs=83.4
Q ss_pred CCCccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhhhhcccchh--hHHHhhcchhhHHHHHHHHHHH
Q psy13614 3 GSNRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDKFGQSIGG--RLVVANIAWPNEWVILIGSFLS 80 (118)
Q Consensus 3 ~~~~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 80 (118)
.++++||+|||+||+|||++.++.++.++|+.+..+..+..+.+++.+.. .+... ....+...+. ..++.+..+++
T Consensus 210 ~~~~aeE~k~P~r~iprai~~s~~~~~~~~~~~~~~~~g~~~~~~l~~~~-~p~~~~~~~~~g~~~~~-~~~i~~~~~~~ 287 (442)
T TIGR00908 210 VAMAAEETKNPKRDIPRGLIGAILTLLALAAGILVVGPGAADAKELMGSN-NPLPEALESIYGGSTWM-SQFVNLVGLFG 287 (442)
T ss_pred HHHHHHHhcCcccccCHHHHHHHHHHHHHHHHHHHHHhcCCCHHHhCCCc-chHHHHHHHHhCCchHH-HHHHHHHHHHH
Confidence 46889999999999999999999999999999888777677777664322 22211 1111221222 23455555677
Q ss_pred HHHHHHHHhhhHHHHHHHhhcCCCccCCCCCCCCCCCC
Q psy13614 81 TIGAGLQSLTGAPRLLQQGPKSDIIRTEDNRLKPGSQG 118 (118)
Q Consensus 81 ~~~~~~~~~~~~sR~~~a~ardg~lP~~~~~~k~~~~~ 118 (118)
.+++.++.+++.+|++|+|||||.+|+ +|+|+|++|
T Consensus 288 ~~~s~~~~~~~~sR~l~a~ardg~lP~--~~~~~~~~~ 323 (442)
T TIGR00908 288 LIASFHGIIYGYSRQIFALSRAGYLPE--SLSKVNRKK 323 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccH--HHHHhCCCC
Confidence 888999999999999999999999994 599999654
No 23
>KOG2082|consensus
Probab=99.78 E-value=1.1e-19 Score=143.18 Aligned_cols=118 Identities=68% Similarity=1.015 Sum_probs=108.7
Q ss_pred CCCCCccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhhhhcccchhhHHHhhcchhhHHHHHHHHHHH
Q psy13614 1 MAGSNRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDKFGQSIGGRLVVANIAWPNEWVILIGSFLS 80 (118)
Q Consensus 1 ~~~~~~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (118)
++|+|+++++|||+|+||.+++.++++...+|+...+.+++++....|++..|.......+.+...|+..|++.+|.+++
T Consensus 427 maGSNrSGDLkDaQkSIPvGTI~AilTTS~vYlssv~lFGa~i~~~vLRDKfG~sv~g~lVva~laWPsPwVi~IGsFlS 506 (1075)
T KOG2082|consen 427 MAGSNRSGDLKDAQKSIPVGTIAAILTTSFVYLSSVVLFGACIEGVVLRDKFGQSVGGNLVVATLAWPSPWVIVIGSFLS 506 (1075)
T ss_pred eecCCCCccccchhhcCchhhhHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhhccCcEEEEEecCCCceeeehhHHHH
Confidence 58999999999999999999999999999999999999999998888888777666555667788898889999999999
Q ss_pred HHHHHHHHhhhHHHHHHHhhcCCCccCCCCCCCCCCCC
Q psy13614 81 TIGAGLQSLTGAPRLLQQGPKSDIIRTEDNRLKPGSQG 118 (118)
Q Consensus 81 ~~~~~~~~~~~~sR~~~a~ardg~lP~~~~~~k~~~~~ 118 (118)
++++++.++.+++|+++|+|||+.+|+.+.|+|.+++|
T Consensus 507 T~GAgLQsLtgAPRLLQAIAkD~IiPfL~~F~~~~~ng 544 (1075)
T KOG2082|consen 507 TCGAGLQSLTGAPRLLQAIAKDDIIPFLAPFGHGKANG 544 (1075)
T ss_pred HhHHHHhhhcCcHHHHHHHhhcCccchhhhhccccCCC
Confidence 99999999999999999999999999999999998875
No 24
>TIGR00909 2A0306 amino acid transporter.
Probab=99.78 E-value=9.3e-19 Score=132.61 Aligned_cols=110 Identities=16% Similarity=0.264 Sum_probs=88.3
Q ss_pred CCCccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhhhhcccchhhHHHhhc-chhhHHHHHHHHHHHH
Q psy13614 3 GSNRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDKFGQSIGGRLVVANI-AWPNEWVILIGSFLST 81 (118)
Q Consensus 3 ~~~~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 81 (118)
.++++||+|||+|++||+++.++.+..++|++.++......|.+++.+++. +.. .+..+. +.....++.++.+++.
T Consensus 214 ~~~~~~E~~~p~r~ip~ai~~~~~~~~v~Yil~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~i~~~~~~ 290 (429)
T TIGR00909 214 ISTAAEEVKNPERDIPKAIILSLIVVTLLYVLVAAVILGAVPWRQLAGSTA-PLS--LVGYDLGQGIGGLILTAGAVFSI 290 (429)
T ss_pred HHhhHHhccCccccccHHHHHHHHHHHHHHHHHHHHHhcCcCHHHhCCCCc-HHH--HHHHHhCchHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999998888888877754332 221 111111 1123456778888999
Q ss_pred HHHHHHHhhhHHHHHHHhhcCCCccCCCCCCCCCCC
Q psy13614 82 IGAGLQSLTGAPRLLQQGPKSDIIRTEDNRLKPGSQ 117 (118)
Q Consensus 82 ~~~~~~~~~~~sR~~~a~ardg~lP~~~~~~k~~~~ 117 (118)
+++.++.+.+.+|++|+++|||.+|+ +|+|+|+|
T Consensus 291 ~~~~~~~~~~~sR~~~~~a~dg~lP~--~~~~~~~~ 324 (429)
T TIGR00909 291 ASVMLAGIYGTSRVLFAMSRDGLLPG--SLSKVHPK 324 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcH--HHHHcCCC
Confidence 99999999999999999999999996 59999976
No 25
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=99.77 E-value=1.2e-18 Score=133.98 Aligned_cols=112 Identities=16% Similarity=0.164 Sum_probs=88.2
Q ss_pred CCCccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhhhhcccchhhHHHhhcchhhHHHHHHHHHHHHH
Q psy13614 3 GSNRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDKFGQSIGGRLVVANIAWPNEWVILIGSFLSTI 82 (118)
Q Consensus 3 ~~~~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (118)
.++++||+|| +|++||+++.++.+++++|++.+.+.....+.+++.+...+.... ......+..+..++.++.+++.+
T Consensus 218 ~~~~a~E~k~-~r~iPrai~~~~~i~~~~Yil~~~~~~~~~~~~~l~~~~~p~~~~-~~~~~~g~~~~~~i~i~~~is~~ 295 (473)
T TIGR00905 218 AVVSSGRAKN-KSDVGKATVLGTLGALVIYILITLLSLGVLPQQELANLPNPSMAA-VLEMIVGKWGAVLISLGLIISVL 295 (473)
T ss_pred HHHHHHHHhc-cccchHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhhCCCchHHH-HHHHHhChHHHHHHHHHHHHHHH
Confidence 4578999999 999999999999999999999999988888888876543221211 11111111233467777889999
Q ss_pred HHHHHHhhhHHHHHHHhhcCCCccCCCCCCCCCCCC
Q psy13614 83 GAGLQSLTGAPRLLQQGPKSDIIRTEDNRLKPGSQG 118 (118)
Q Consensus 83 ~~~~~~~~~~sR~~~a~ardg~lP~~~~~~k~~~~~ 118 (118)
++.++.+.+.+|++|+|||||.+|+ +|+|+|++|
T Consensus 296 ~~~~~~~~~~sR~~~amardg~lP~--~~~~v~~~~ 329 (473)
T TIGR00905 296 GSLLSWTMLAAEVPFSAAKDGLFPK--IFGRVNKNG 329 (473)
T ss_pred HHHHHHHHHHHHHHHHHHhCCChhH--HHHhhCccC
Confidence 9999999999999999999999994 599999874
No 26
>PRK10746 putative transport protein YifK; Provisional
Probab=99.77 E-value=3.6e-19 Score=136.64 Aligned_cols=111 Identities=11% Similarity=0.107 Sum_probs=87.6
Q ss_pred CCCccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhhhhcccchhhHHHhhcch-hhHHHHHHHHHHHH
Q psy13614 3 GSNRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDKFGQSIGGRLVVANIAW-PNEWVILIGSFLST 81 (118)
Q Consensus 3 ~~~~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 81 (118)
.++.+||+|||+|++|||+..++....++|++..+++..++|++++..+ +.|... .+...+. ....++...++++.
T Consensus 219 v~~~a~E~knP~k~iP~Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~-~sp~v~--~~~~~g~~~~~~i~~~~il~a~ 295 (461)
T PRK10746 219 IGITAGEAKNPQVTLRSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSN-GSPFVL--TFAKIGITAAAGIINFVVLTAA 295 (461)
T ss_pred HHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCC-CCcHHH--HHHHhCchhHHHHHHHHHHHHH
Confidence 3578999999999999999999999999999999998888888766532 223221 1222221 12345666777889
Q ss_pred HHHHHHHhhhHHHHHHHhhcCCCccCCCCCCCCCCCC
Q psy13614 82 IGAGLQSLTGAPRLLQQGPKSDIIRTEDNRLKPGSQG 118 (118)
Q Consensus 82 ~~~~~~~~~~~sR~~~a~ardg~lP~~~~~~k~~~~~ 118 (118)
+++.++.+++.||++|+|||||.+|++ |+|+|++|
T Consensus 296 ~s~~n~~~~~~sR~l~~~a~~g~lP~~--~~~~~~~g 330 (461)
T PRK10746 296 LSGCNSGMYSCGRMLYALAKNRQLPAA--MAKVSRHG 330 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcCHH--HHHhCCCC
Confidence 999999999999999999999999976 99999875
No 27
>KOG1287|consensus
Probab=99.77 E-value=8e-19 Score=133.94 Aligned_cols=108 Identities=12% Similarity=0.156 Sum_probs=88.7
Q ss_pred CccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhhhhcccchhhHHHhhcchhhHHHHHHHHHHHHHHH
Q psy13614 5 NRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDKFGQSIGGRLVVANIAWPNEWVILIGSFLSTIGA 84 (118)
Q Consensus 5 ~~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (118)
..+||+|||+||+|||+.+++.++++.|++++++....+++|++..+++. +..+.-...+.. .+.+.+.+.++.+++
T Consensus 225 ~vteEiknP~ktLP~Ai~isi~lvt~iYil~NvAy~~vls~~e~l~S~aV--av~Fa~~~~G~~-~~~ip~~ValS~~G~ 301 (479)
T KOG1287|consen 225 YVTEEIKNPRRTLPRAILISIPLVTVIYVLVNVAYFTVLSPDEILSSDAV--AVTFADRILGVF-AWAIPFSVALSLIGS 301 (479)
T ss_pred cchHhhcCccccchHHHHHhhHHHHHHHHHhHhheeEecCHHHhcccchH--HHHHHHHhccch-HHHHHHHHHHHhhhh
Confidence 57899999999999999999999999999999999999998888655432 222221122222 367888888999999
Q ss_pred HHHHhhhHHHHHHHhhcCCCccCCCCCCCCCCC
Q psy13614 85 GLQSLTGAPRLLQQGPKSDIIRTEDNRLKPGSQ 117 (118)
Q Consensus 85 ~~~~~~~~sR~~~a~ardg~lP~~~~~~k~~~~ 117 (118)
.++.+++.||.+|++||+|+||.. |++.|++
T Consensus 302 ~n~~ifs~SR~~~~~areG~LP~~--~s~i~~~ 332 (479)
T KOG1287|consen 302 LNSVIFSSSRLFYAGAREGHLPAF--FSMISVR 332 (479)
T ss_pred hhhHHHHHHHHHHHHHHccCccHH--HHhhcCC
Confidence 999999999999999999999976 7777765
No 28
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=99.77 E-value=5.2e-19 Score=135.84 Aligned_cols=112 Identities=10% Similarity=0.088 Sum_probs=86.0
Q ss_pred CCCccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhhhhcccchhhHHHhhcchhhHHHHHHHHHHHHH
Q psy13614 3 GSNRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDKFGQSIGGRLVVANIAWPNEWVILIGSFLSTI 82 (118)
Q Consensus 3 ~~~~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (118)
.++++||+|||+||+||+++.+++...++|++.........|++++.... .|...........+ ...++.+.++++.+
T Consensus 230 ~~~~a~E~knP~r~iPrai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~-~p~~~~~~~~g~~~-~~~~~~~~~~~s~~ 307 (469)
T PRK11049 230 VGTTAAETKDPEKSLPRAINSIPIRIIMFYVFALIVIMSVTPWSSVVPDK-SPFVELFVLVGLPA-AASVINFVVLTSAA 307 (469)
T ss_pred HHHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHHHHHeeecCccccCccC-CcHHHHHHHcCChh-HHHHHHHHHHHHHH
Confidence 45789999999999999999888889999999999887777777664332 23211111111112 23466667788899
Q ss_pred HHHHHHhhhHHHHHHHhhcCCCccCCCCCCCCCCCC
Q psy13614 83 GAGLQSLTGAPRLLQQGPKSDIIRTEDNRLKPGSQG 118 (118)
Q Consensus 83 ~~~~~~~~~~sR~~~a~ardg~lP~~~~~~k~~~~~ 118 (118)
++.++.+++.+|++|+|||||.+|+ +|+|+|++|
T Consensus 308 ~~~~~~~~~~sR~l~a~ardg~lP~--~~~kv~~~~ 341 (469)
T PRK11049 308 SSANSGVFSTSRMLFGLAQEGVAPK--AFAKLSKRA 341 (469)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCH--HHHhhCCCC
Confidence 9999999999999999999999994 599999875
No 29
>PRK10580 proY putative proline-specific permease; Provisional
Probab=99.76 E-value=8.8e-19 Score=134.12 Aligned_cols=111 Identities=13% Similarity=0.132 Sum_probs=85.1
Q ss_pred CCCccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhhhhcccchhhHHHhhcch-hhHHHHHHHHHHHH
Q psy13614 3 GSNRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDKFGQSIGGRLVVANIAW-PNEWVILIGSFLST 81 (118)
Q Consensus 3 ~~~~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 81 (118)
.++++||+|||+|++|||++.++.++.++|+...+......|.+++.. .+.|.. ......+. ....++.+..+++.
T Consensus 218 ~~~~a~E~knP~k~iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~i~~-~~~p~~--~~~~~~g~~~~~~~~~~~~~~~~ 294 (457)
T PRK10580 218 IGITAGEAKDPEKSIPRAINSVPMRILVFYVGTLFVIMSIYPWNQVGT-NGSPFV--LTFQHMGITFAASILNFVVLTAS 294 (457)
T ss_pred HHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecccCCCCc-cCChHH--HHHHHcCChhHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999988887777766543 222321 11111221 22345566667788
Q ss_pred HHHHHHHhhhHHHHHHHhhcCCCccCCCCCCCCCCCC
Q psy13614 82 IGAGLQSLTGAPRLLQQGPKSDIIRTEDNRLKPGSQG 118 (118)
Q Consensus 82 ~~~~~~~~~~~sR~~~a~ardg~lP~~~~~~k~~~~~ 118 (118)
+++.++.+++.+|++|+|||||.+| ++|+|+|++|
T Consensus 295 ~~~~~~~~~~~sR~~~~~ardg~lP--~~~~kv~~~~ 329 (457)
T PRK10580 295 LSAINSDVFGVGRMLHGMAEQGSAP--KIFSKTSRRG 329 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcC--HHHHhhCCCC
Confidence 8999999999999999999999999 4599999865
No 30
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=99.76 E-value=2.9e-18 Score=131.64 Aligned_cols=111 Identities=17% Similarity=0.159 Sum_probs=88.7
Q ss_pred CCCccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhhhhcccchhhHHHhh-cchhhHHHHHHHHHHHH
Q psy13614 3 GSNRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDKFGQSIGGRLVVAN-IAWPNEWVILIGSFLST 81 (118)
Q Consensus 3 ~~~~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 81 (118)
.++++||.|| +||+||+++.++.+..++|++.+++..+.++++++.+...++.. .+... .+..+..++.++++++.
T Consensus 214 ~~~~a~e~k~-~k~ip~ai~~~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~--~~~~~~~g~~~~~~i~~~~~is~ 290 (468)
T TIGR03810 214 ASMLSARAEK-RSDVGKATVIGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMA--YVLEHMVGTWGAVLINIGLIISI 290 (468)
T ss_pred HhhhHhhccC-cccchHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHH--HHHHHHcchHHHHHHHHHHHHHH
Confidence 4678999998 79999999999999999999999999988888877643222111 11111 11123457788889999
Q ss_pred HHHHHHHhhhHHHHHHHhhcCCCccCCCCCCCCCCCC
Q psy13614 82 IGAGLQSLTGAPRLLQQGPKSDIIRTEDNRLKPGSQG 118 (118)
Q Consensus 82 ~~~~~~~~~~~sR~~~a~ardg~lP~~~~~~k~~~~~ 118 (118)
+++.++.+++.+|++|+|||||.+|+ +|+|+|++|
T Consensus 291 ~~~~~~~~~~~sR~~~a~ardg~lP~--~f~k~~~~~ 325 (468)
T TIGR03810 291 LGAWLSWTLLPAEIPLLMAKDKLMPK--YFGKENANG 325 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCccH--HHHhhCCCC
Confidence 99999999999999999999999995 499999875
No 31
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=99.75 E-value=2.5e-18 Score=133.40 Aligned_cols=113 Identities=12% Similarity=0.102 Sum_probs=83.5
Q ss_pred CCCccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhhhhcccchhhHHHhh----cchhhHHHHHHHHH
Q psy13614 3 GSNRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDKFGQSIGGRLVVAN----IAWPNEWVILIGSF 78 (118)
Q Consensus 3 ~~~~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 78 (118)
.++++||+|||+|++|||++.+++++.++|.+.++.+...+|++++....+........... ..|. ..++.+..+
T Consensus 213 ~a~~a~E~knP~r~~PrAi~~~~i~~~~l~~l~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ii~~~~~ 291 (507)
T TIGR00910 213 SASHINELENPGRDYPLAMILLMIAAICLDAIGGFSIAAVIPGKEINLSAGVIQTFQTLILHFAHEIEWL-VKVIAALIA 291 (507)
T ss_pred HHHHHHHccCCcccccHHHHHHHHHHHHHHHHHHHHHheecChhhcccchHHHHHHHHHHHhhccchhHH-HHHHHHHHH
Confidence 46789999999999999999999999999999888877777876654322211000111111 1122 224555667
Q ss_pred HHHHHHHHHHhhhHHHHHHHhhcCCCccCCCCCCCCCCCC
Q psy13614 79 LSTIGAGLQSLTGAPRLLQQGPKSDIIRTEDNRLKPGSQG 118 (118)
Q Consensus 79 ~~~~~~~~~~~~~~sR~~~a~ardg~lP~~~~~~k~~~~~ 118 (118)
++.+++.++++++.+|++|++||||.+| ++|+|+|++|
T Consensus 292 ~~~l~~~~~~i~~~sR~l~~~ardg~lP--~~~~k~nk~~ 329 (507)
T TIGR00910 292 FGVLAEIASWIVGPSRGMFAAAQKGLLP--AAFAKMNKHE 329 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCcC--HHHHhhCcCC
Confidence 7788888999999999999999999999 4599999765
No 32
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=99.75 E-value=5.3e-18 Score=128.87 Aligned_cols=113 Identities=17% Similarity=0.196 Sum_probs=88.5
Q ss_pred CCCccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhhhhc-ccchhhHHHhhcchhhHHHHHHHHHHHH
Q psy13614 3 GSNRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDKFG-QSIGGRLVVANIAWPNEWVILIGSFLST 81 (118)
Q Consensus 3 ~~~~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (118)
.++++||+|||+|++||+++.++.+..++|++.+++.....+.+++..... .|....... ..+..+..++.+..+++.
T Consensus 220 ~~~~a~E~knp~r~ip~aii~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~g~~~~~~i~~~~~~~~ 298 (466)
T COG0531 220 IATLAEEVKNPKRTIPRAIILSLLIVLILYILGALVIVGVLPAGDLAASAPSAPLALAALF-GGGNWGAIIIAILALLSL 298 (466)
T ss_pred HHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHhCccHHHHhccCCCccHHHHHHH-cCccHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999998864543211 121111111 111123456777888999
Q ss_pred HHHHHHHhhhHHHHHHHhhcCCCccCCCCCCCCCCCC
Q psy13614 82 IGAGLQSLTGAPRLLQQGPKSDIIRTEDNRLKPGSQG 118 (118)
Q Consensus 82 ~~~~~~~~~~~sR~~~a~ardg~lP~~~~~~k~~~~~ 118 (118)
+++.++...+.+|.+|+|+|||.+|+ +++|+|+++
T Consensus 299 ~~~~~~~~~~~sR~~~~~ardg~lP~--~~~~~~~~~ 333 (466)
T COG0531 299 FGSLLAWILAVSRVLYAMARDGLLPK--FFAKVNPKG 333 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCccH--HHHHhCCCC
Confidence 99999999999999999999999998 599999874
No 33
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=99.73 E-value=5.3e-19 Score=135.86 Aligned_cols=116 Identities=15% Similarity=0.172 Sum_probs=86.5
Q ss_pred CCCCccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhhhhcccchhhH--HHhhcc-hhhHHHHHHHHH
Q psy13614 2 AGSNRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDKFGQSIGGRL--VVANIA-WPNEWVILIGSF 78 (118)
Q Consensus 2 ~~~~~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~ 78 (118)
+.+.++||+|||+|++|||+..++++.+++|++..++.....+++.+..........++ ...... .....++.++.+
T Consensus 218 ~~a~~a~E~k~P~k~IPra~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~i~~~~~l 297 (478)
T PF00324_consen 218 SIAILAEEAKNPRKTIPRATLLSVLRIGVFYVLTSYALTLAVPYDNLGLTAASNSASPFVIAAQYSGGPWLAWIVNAGIL 297 (478)
T ss_pred ccccccccCCCchhhhhhHhhhhhhhhhhhhhhhhhhcccccCccchhhccccccccchhhhhhhcccccccceecccch
Confidence 56789999999999999999999999999999999999999988765432211100111 111111 123456778889
Q ss_pred HHHHHHHHHHhhhHHHHHHHhhcCCCccCCCCCCCCCCCC
Q psy13614 79 LSTIGAGLQSLTGAPRLLQQGPKSDIIRTEDNRLKPGSQG 118 (118)
Q Consensus 79 ~~~~~~~~~~~~~~sR~~~a~ardg~lP~~~~~~k~~~~~ 118 (118)
++.+++.++.+++.||++|+|+|||.+|. +++++.+++|
T Consensus 298 ~s~~s~~~~~~~~~sR~l~ama~dg~lP~-~~~~~~~k~~ 336 (478)
T PF00324_consen 298 ISAFSSANASLYAASRLLYAMARDGLLPK-KFFARHPKNG 336 (478)
T ss_pred hhhhhhhhhhhcccceeehhhhhhhhhhh-hhhhhhhcCC
Confidence 99999999999999999999999999993 2355545444
No 34
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=99.71 E-value=1.9e-17 Score=127.35 Aligned_cols=111 Identities=15% Similarity=0.146 Sum_probs=89.3
Q ss_pred ccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChH--HHhhhh-cccchhhHH--Hhhcch-hhHHHHHHHHHH
Q psy13614 6 RSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNL--LLRDKF-GQSIGGRLV--VANIAW-PNEWVILIGSFL 79 (118)
Q Consensus 6 ~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~--~l~~~~-~~~~~~~~~--~~~~~~-~~~~~~~~~~~~ 79 (118)
.|+|.+||+|++|||+-..+..+.++|++..++++.++|++ .|..+. ......+++ +...++ ..+.++...+++
T Consensus 256 aAgEs~nP~K~iPkAik~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~~~~Gi~~~~~imNaVIL~ 335 (541)
T COG0833 256 AAGESENPRKSIPKAIKQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIKNAGIPVAASIMNAVILT 335 (541)
T ss_pred eecccCCchhhhHHHHHHHHHHHHHHHHHHHHHheEEccCCCcccccCCcCCccCCChhHhHHhcCCccchHHHHHHHHH
Confidence 48999999999999999999999999999999999999874 232221 111223332 333332 234678888999
Q ss_pred HHHHHHHHHhhhHHHHHHHhhcCCCccCCCCCCCCCCCC
Q psy13614 80 STIGAGLQSLTGAPRLLQQGPKSDIIRTEDNRLKPGSQG 118 (118)
Q Consensus 80 ~~~~~~~~~~~~~sR~~~a~ardg~lP~~~~~~k~~~~~ 118 (118)
+.++++|+.++++||++|+||+||..|+. |+|+|++|
T Consensus 336 svlSa~NS~lYasSR~L~sLA~~g~APk~--f~~~~r~G 372 (541)
T COG0833 336 SVLSAANSGLYASSRMLYSLAKQGKAPKI--FAKVDRRG 372 (541)
T ss_pred HHHHHhhccchHHHHHHHHHHhcCCCchH--HHhhCCCC
Confidence 99999999999999999999999999977 99999987
No 35
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=99.71 E-value=5.6e-17 Score=122.56 Aligned_cols=112 Identities=16% Similarity=0.206 Sum_probs=86.7
Q ss_pred CCCccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhhhhcccchhhHHHhhcc-hhhHHHHHHHHHHHH
Q psy13614 3 GSNRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDKFGQSIGGRLVVANIA-WPNEWVILIGSFLST 81 (118)
Q Consensus 3 ~~~~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 81 (118)
.++++||.|| |++||+++.++.++.++|++.++......|++++...+..+........... .....++.+..+++.
T Consensus 207 ~~~~~~E~k~--k~ip~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 284 (426)
T PF13520_consen 207 IASLAEENKN--KTIPRAIIISIIIVAIIYILFSIALLGALPDDELANSSNSPSPFAVLASAVGGSWLAIIVSIAAILSL 284 (426)
T ss_dssp HHHGGGGSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHHHHHHHHCCTHHHHHHHHHHHHH
T ss_pred cccccccccc--hhheeecccchhHHHHHHhhhhheeeecccchhhhcccccccccchhhcccccccccccccccccccc
Confidence 4678999777 8999999999999999999999999999998776543221100111111111 123456778888899
Q ss_pred HHHHHHHhhhHHHHHHHhhcCCCccCCCCCCCCCCCC
Q psy13614 82 IGAGLQSLTGAPRLLQQGPKSDIIRTEDNRLKPGSQG 118 (118)
Q Consensus 82 ~~~~~~~~~~~sR~~~a~ardg~lP~~~~~~k~~~~~ 118 (118)
+++.++.+.+.+|++|+|+|||.+| ++|+|+|++|
T Consensus 285 ~~~~~~~~~~~sR~l~~~a~d~~lP--~~~~~~~k~~ 319 (426)
T PF13520_consen 285 FGSINAFIFGASRLLYAMARDGVLP--KWFAKVNKFG 319 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSS--GGGGTTSSSS
T ss_pred ccccchhhcchhhcccccccccchh--hhhhhccccC
Confidence 9999999999999999999999999 5699999654
No 36
>KOG1288|consensus
Probab=99.65 E-value=4.7e-16 Score=122.11 Aligned_cols=107 Identities=35% Similarity=0.482 Sum_probs=92.5
Q ss_pred CCCCCccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhhhhcccchhhHHHhhcc-hhhHHHHHHHHHH
Q psy13614 1 MAGSNRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDKFGQSIGGRLVVANIA-WPNEWVILIGSFL 79 (118)
Q Consensus 1 ~~~~~~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 79 (118)
+||++|++|+|+|.|+|||+++.++...+++|+++.+.+....++..|.+++.. +...+ | .+++.+|++-
T Consensus 311 mAGAnMSgELk~PSkSIP~GTl~ava~Tf~~Yvl~~flm~~t~~r~~Lq~dy~v-------~~~isl~--p~fi~iGi~s 381 (945)
T KOG1288|consen 311 MAGANMSGELKAPSKSIPKGTLSAVAFTFFVYVLVIFLMGCTVPRTLLQNDYDV-------MMHISLH--PPFILIGILS 381 (945)
T ss_pred hcCCCcCccccCccccCCccchHHHHHHHHHHHHHHHHhccCcchHHhhhchhh-------eeecccc--chHHHHHHHH
Confidence 589999999999999999999999999999999999998888898888766532 22222 3 3578899999
Q ss_pred HHHHHHHHHhhhHHHHHHHhhcCCCccCCCCCCCCCC
Q psy13614 80 STIGAGLQSLTGAPRLLQQGPKSDIIRTEDNRLKPGS 116 (118)
Q Consensus 80 ~~~~~~~~~~~~~sR~~~a~ardg~lP~~~~~~k~~~ 116 (118)
+.+++.++.+++++|++.++|||+.+|..-.++|..+
T Consensus 382 ttlfss~s~liGasrvL~alakD~lfg~ll~fak~~s 418 (945)
T KOG1288|consen 382 TTLFSSMSGLIGASRVLEALAKDDLFGGLLFFAKGSS 418 (945)
T ss_pred HHHHHHHHHHhhHHHHHHHHhhcccchhhheeeeccc
Confidence 9999999999999999999999999998877887644
No 37
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=99.62 E-value=1.5e-15 Score=117.54 Aligned_cols=114 Identities=13% Similarity=0.133 Sum_probs=82.2
Q ss_pred CCCccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhhhhcccc-hhhH----HHhh-------------
Q psy13614 3 GSNRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDKFGQSI-GGRL----VVAN------------- 64 (118)
Q Consensus 3 ~~~~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~~~~~~~-~~~~----~~~~------------- 64 (118)
.++++||+|||+|++|||++.++.++.++|++..+.+....|+++.......+. ...+ ..+.
T Consensus 230 ~~~~a~E~~~p~~~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~ 309 (496)
T PRK15238 230 VGGLVDKTENPEKNFPKGIIIAAIVISIGYSLAIFLWGVSTNWQQVLSNKSVNLGNITYVLMNNLGYTLGHALGLSPAAS 309 (496)
T ss_pred HHHHHHhccCCCccccHHHHHHHHHHHHHHHHHHHHHHhcCchhhcCCccccchhccHHHHHHHHHHHHHHHhccchhhh
Confidence 468899999999999999999999999999999887777777665432211111 1011 0110
Q ss_pred c--chhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcCCCccCCCCCCCCCCCC
Q psy13614 65 I--AWPNEWVILIGSFLSTIGAGLQSLTGAPRLLQQGPKSDIIRTEDNRLKPGSQG 118 (118)
Q Consensus 65 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~a~ardg~lP~~~~~~k~~~~~ 118 (118)
. +.....++.+..+++.+++.++.+++.+|.+++++|||.+|+. |+|+|++|
T Consensus 310 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~g~~P~~--f~k~nk~g 363 (496)
T PRK15238 310 LTLGVWFARITGLSMFLAYTGAFFTLSYSPLKQLIEGTPKALWPKK--MTKLNKNG 363 (496)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCccCcccHH--HHhhCcCC
Confidence 0 0001113455667888899999999999999999999999965 99999775
No 38
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=99.49 E-value=2.7e-15 Score=113.68 Aligned_cols=108 Identities=13% Similarity=0.108 Sum_probs=87.6
Q ss_pred ccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhhhhcccchhhHHHhhcch-hhHHHHHHHHHHHHHHH
Q psy13614 6 RSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDKFGQSIGGRLVVANIAW-PNEWVILIGSFLSTIGA 84 (118)
Q Consensus 6 ~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 84 (118)
.+.|.|||+|.+|||+-.-.....++|+.-.+++....|++++.++. .|+.. .+...+- ..+.++...++.+.+++
T Consensus 225 tA~Et~dP~k~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~-SPFV~--~f~~iGi~~Aa~i~N~VVLtAa~S~ 301 (462)
T COG1113 225 TAAEAKDPEKAIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDG-SPFVT--VFSLIGIPFAAGIMNFVVLTAALSA 301 (462)
T ss_pred HHHhhcChhhHHHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCC-CcHHH--HHHHcCCcccccceeEEEeechhhc
Confidence 47899999999999999999999999999999999999998876533 33321 2222221 12335666667889999
Q ss_pred HHHHhhhHHHHHHHhhcCCCccCCCCCCCCCCCC
Q psy13614 85 GLQSLTGAPRLLQQGPKSDIIRTEDNRLKPGSQG 118 (118)
Q Consensus 85 ~~~~~~~~sR~~~a~ardg~lP~~~~~~k~~~~~ 118 (118)
.|+.+++.+|++|.+|+||..|+. ++|+|++|
T Consensus 302 ~NSglystsRmL~~la~~g~APk~--~~klsk~g 333 (462)
T COG1113 302 LNSGLYSTSRMLYSLAKQGDAPKA--FAKLSKRG 333 (462)
T ss_pred ccccccccchHHHHHhhcCcccHh--HhhccccC
Confidence 999999999999999999999977 99999986
No 39
>KOG2083|consensus
Probab=98.58 E-value=9.4e-08 Score=74.95 Aligned_cols=115 Identities=26% Similarity=0.289 Sum_probs=84.6
Q ss_pred CCCCCccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhhhhc--c-----cchhh-HHHhhcchhhHHH
Q psy13614 1 MAGSNRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDKFG--Q-----SIGGR-LVVANIAWPNEWV 72 (118)
Q Consensus 1 ~~~~~~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~~~~--~-----~~~~~-~~~~~~~~~~~~~ 72 (118)
+||++++++.|+|++++|++.++++.+...+|+....-.+.+..++.+..... . -.... .........+ -.
T Consensus 240 laG~nisGdL~~Pq~~IP~GaL~Ai~vst~~yl~~i~~~Ga~~~r~~~~~~~~~~~~~c~~gl~~~~qv~smvS~~~-Pl 318 (643)
T KOG2083|consen 240 LAGANISGDLKDPQKAIPLGALLAIGVSTLLYLIFIADLGATPVRDALENWNDTSTKSCPIGLTNYLQVMSMVSTFG-PL 318 (643)
T ss_pred hccccccCCCCCchhhcccchhhhhhhhhhhhhhhhhhcccHHHHHHhccchhhccCCCccchHHHHHHHHhHhhcc-cc
Confidence 58999999999999999999999999999999998888777765554332110 0 01111 1222121111 25
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhhcCCCccCCCCCCCCCC
Q psy13614 73 ILIGSFLSTIGAGLQSLTGAPRLLQQGPKSDIIRTEDNRLKPGS 116 (118)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~sR~~~a~ardg~lP~~~~~~k~~~ 116 (118)
...|.+.+..++..+++.+++++++++.+|...|...++.|-..
T Consensus 319 ~~AGi~~a~LSsalsslVsap~V~QaL~kd~~yp~i~~f~KgyG 362 (643)
T KOG2083|consen 319 ITAGILAAELSSALSSLVSAPKVLQALCKDSLYPSILFFAKGYG 362 (643)
T ss_pred hhhHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCccHHHHHccCC
Confidence 66777888888899999999999999999999998877775443
No 40
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=98.31 E-value=3.4e-06 Score=63.33 Aligned_cols=99 Identities=10% Similarity=0.007 Sum_probs=68.3
Q ss_pred CccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhhhhc--ccchh-hHHHhh--cchhhHHHHHHHHHH
Q psy13614 5 NRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDKFG--QSIGG-RLVVAN--IAWPNEWVILIGSFL 79 (118)
Q Consensus 5 ~~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~~~~--~~~~~-~~~~~~--~~~~~~~~~~~~~~~ 79 (118)
.+.+|.+|++|++||+++.+..+..++|++...+..+.++++++.+... ..... ...... ..+....++..+.++
T Consensus 199 ~~~~~~~~~~k~i~raii~g~~i~~~lY~l~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~ 278 (381)
T TIGR00837 199 SLYKYYDGNVKKVKKSILIGSAIALVLYILWQLATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNF 278 (381)
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 3467888779999999999999999999999999999999988764221 11111 011111 112234567777788
Q ss_pred HHHHHHHHHhhhHHHHHHH-hhcCC
Q psy13614 80 STIGAGLQSLTGAPRLLQQ-GPKSD 103 (118)
Q Consensus 80 ~~~~~~~~~~~~~sR~~~a-~ardg 103 (118)
+..++.++...+.++-+.. +.+|+
T Consensus 279 al~tS~~g~~l~~~d~l~~~~~~~~ 303 (381)
T TIGR00837 279 ALASSFLGVTLGLFDYLADLFKFDD 303 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 8888888888888777654 34443
No 41
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=97.49 E-value=0.0013 Score=50.09 Aligned_cols=92 Identities=8% Similarity=0.082 Sum_probs=63.7
Q ss_pred ccccccccChhHHHHHHH-HHHHHHHHHHHHHHHHhcChHHHhhh-hcccchhhHHHhhcchhhHHHHHHHHHHHHHHHH
Q psy13614 8 GDLADAQRSIPTGTICAI-LTTSFVYLSCVLLFAGTVDNLLLRDK-FGQSIGGRLVVANIAWPNEWVILIGSFLSTIGAG 85 (118)
Q Consensus 8 ~E~k~p~k~iP~aii~s~-~~~~~ly~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (118)
.|.|||+|..|+.+..++ ....+.|+-..+...+..+.+.+.+. ++............+..+..++.+..+++++++.
T Consensus 206 ~g~~~~~~~~~~~i~~G~ia~i~l~~vY~~L~~lGa~~~~~~~~~~~~~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~ 285 (378)
T TIGR00796 206 RGVTKPKKITKYTIKAGLIAAVLLAFIYLSLFYLGATSAAAAGDAVNGAQILSAYSQHLFGSLGSFLLGLIITLACLTTA 285 (378)
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccCCcHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHH
Confidence 399999999999999999 66667778788888887776655421 1211111111111222355678888889999999
Q ss_pred HHHhhhHHHHHHHh
Q psy13614 86 LQSLTGAPRLLQQG 99 (118)
Q Consensus 86 ~~~~~~~sR~~~a~ 99 (118)
++-+.+.++.....
T Consensus 286 iGli~~~a~~f~~~ 299 (378)
T TIGR00796 286 VGLTTACSEYFHKL 299 (378)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999988887776
No 42
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=96.87 E-value=0.012 Score=43.78 Aligned_cols=45 Identities=13% Similarity=0.163 Sum_probs=39.1
Q ss_pred ccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhhh
Q psy13614 6 RSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDK 51 (118)
Q Consensus 6 ~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~~ 51 (118)
..+|.||| |++||+++.++.++.++|+...++..+..++++.+..
T Consensus 201 ~~~~~~~~-~~~~k~~~~~~~~~~~ly~~~~~~~i~~lg~~~~~~~ 245 (359)
T TIGR00912 201 LFPLLSKK-KKIKKSIIKAIIIGVLLYILTTFVSISVFGGNVTKNL 245 (359)
T ss_pred HHHHhCCh-hhhHHHHHHHHHHHHHHHHHHHHHHHheecHHHhhhh
Confidence 45788986 5699999999999999999999999999998877653
No 43
>PHA02764 hypothetical protein; Provisional
Probab=94.38 E-value=0.069 Score=40.07 Aligned_cols=27 Identities=15% Similarity=0.053 Sum_probs=23.3
Q ss_pred hhhHHHHHHHhhcCCCccCCCCCCCCCCC
Q psy13614 89 LTGAPRLLQQGPKSDIIRTEDNRLKPGSQ 117 (118)
Q Consensus 89 ~~~~sR~~~a~ardg~lP~~~~~~k~~~~ 117 (118)
.--.||.+++|+-|+.+|. +|+|.||+
T Consensus 256 ~~~~srli~~~~fd~~lpe--~f~k~~~n 282 (399)
T PHA02764 256 NKIQSRLIQTMSFDKVLPE--KFSKINPN 282 (399)
T ss_pred cchHHHHHHHHHhhhhchH--HHhccCCC
Confidence 5568999999999999995 49999875
No 44
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=93.95 E-value=0.66 Score=35.53 Aligned_cols=90 Identities=18% Similarity=0.084 Sum_probs=53.0
Q ss_pred ccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhhh--hc-ccchhhHHHhh--cchhhHHHHHHHHHHHHH
Q psy13614 8 GDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDK--FG-QSIGGRLVVAN--IAWPNEWVILIGSFLSTI 82 (118)
Q Consensus 8 ~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~~--~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 82 (118)
+..++-+|.+.|+++.+..+..++|++..+++.+.+|++++.+- .+ +........++ .++....+..+..+++..
T Consensus 208 ~~~~~d~~k~~~ai~~Gs~i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~ 287 (394)
T PF03222_consen 208 KYLGGDPKKIRKAIIIGSLIPLVMYLLWVFSILGSLPREQFAEAIAQGGNVSALVSALANVSGSPWISILGSIFAFFAIA 287 (394)
T ss_pred HHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHH
Confidence 34454467899999999999999999999999999988765431 11 11110111111 112222334444555566
Q ss_pred HHHHHHhhhHHHHHH
Q psy13614 83 GAGLQSLTGAPRLLQ 97 (118)
Q Consensus 83 ~~~~~~~~~~sR~~~ 97 (118)
++.++...+....+.
T Consensus 288 TSFlGv~lgl~d~l~ 302 (394)
T PF03222_consen 288 TSFLGVYLGLFDFLA 302 (394)
T ss_pred HHHHHHHHHHHHHHH
Confidence 665555555555543
No 45
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=92.51 E-value=1.7 Score=33.32 Aligned_cols=43 Identities=12% Similarity=-0.063 Sum_probs=35.9
Q ss_pred cccccc---ccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhh
Q psy13614 8 GDLADA---QRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRD 50 (118)
Q Consensus 8 ~E~k~p---~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~ 50 (118)
||-+|| +|..-|++..+..+..++|+...++..+.++++++.+
T Consensus 214 ~~~~~~~~~~~k~~k~i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~ 259 (397)
T TIGR00814 214 EEYGDKEFAERKCLRIMKGASLILVATVMFFVFSCVLSLSPAEAVA 259 (397)
T ss_pred HHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHH
Confidence 455544 5778899999999999999999999999998887654
No 46
>PRK10483 tryptophan permease; Provisional
Probab=90.24 E-value=3.5 Score=31.98 Aligned_cols=87 Identities=14% Similarity=0.104 Sum_probs=51.7
Q ss_pred ccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhhh--hcccchhh-HHHhh-cc-hhhHHHHHHHHHHHHHHHHH
Q psy13614 12 DAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDK--FGQSIGGR-LVVAN-IA-WPNEWVILIGSFLSTIGAGL 86 (118)
Q Consensus 12 ~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~~--~~~~~~~~-~~~~~-~~-~~~~~~~~~~~~~~~~~~~~ 86 (118)
|+ |.+.|+++.+..+-.++|++...+..+.+|++++.+. .+...... ...++ .. +....+..+...++..++-+
T Consensus 221 d~-~kir~~I~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFl 299 (414)
T PRK10483 221 DP-KTIVKCLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFL 299 (414)
T ss_pred CH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Confidence 44 4899999999999999999999999999998766432 22221111 11111 11 11122334444455555555
Q ss_pred HHhhhHHHHHHHh
Q psy13614 87 QSLTGAPRLLQQG 99 (118)
Q Consensus 87 ~~~~~~sR~~~a~ 99 (118)
+.-.+...-+..+
T Consensus 300 Gv~LGL~d~l~D~ 312 (414)
T PRK10483 300 GVTLGLFDYLADL 312 (414)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555544
No 47
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=89.50 E-value=7.9 Score=29.90 Aligned_cols=89 Identities=13% Similarity=0.014 Sum_probs=54.2
Q ss_pred cccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhhh--hcccchhh-HHHh---hcchhhHHHHHHHHHHHHHHH
Q psy13614 11 ADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDK--FGQSIGGR-LVVA---NIAWPNEWVILIGSFLSTIGA 84 (118)
Q Consensus 11 k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~~--~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~ 84 (118)
++-+|.+.|+++.+..+..++|++..+++.+.+|++++.+. ++...... .... +..| ...+......++..++
T Consensus 208 ~~~~~~~~k~i~~Gs~i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~-~~~~~~~fa~~Ai~TS 286 (403)
T PRK15132 208 GGNIRKLRWVFIIGSAIPLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREVVASPH-VELAVHLFADLALATS 286 (403)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHHccChH-HHHHHHHHHHHHHHHH
Confidence 44557899999999999999999999999999998765431 11111111 1111 1112 1223444445555666
Q ss_pred HHHHhhhHHHHHHHhh
Q psy13614 85 GLQSLTGAPRLLQQGP 100 (118)
Q Consensus 85 ~~~~~~~~sR~~~a~a 100 (118)
-++.-.+...-+..+=
T Consensus 287 FlGv~lgl~d~l~d~~ 302 (403)
T PRK15132 287 FLGVALGLFDYLADLF 302 (403)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666666665544
No 48
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=89.09 E-value=7.4 Score=30.54 Aligned_cols=38 Identities=11% Similarity=-0.050 Sum_probs=34.2
Q ss_pred cccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhh
Q psy13614 13 AQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRD 50 (118)
Q Consensus 13 p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~ 50 (118)
.+|..-|++..+..+..++|+...+.+.+.++++++.+
T Consensus 248 a~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~ 285 (443)
T PRK13629 248 TERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAE 285 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 36889999999999999999999999999999987753
No 49
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=86.38 E-value=4.1 Score=31.46 Aligned_cols=41 Identities=10% Similarity=0.200 Sum_probs=36.0
Q ss_pred ccccccccccC-hhHHHHHHHHHHHHHHHHHHHHHHHhcChH
Q psy13614 6 RSGDLADAQRS-IPTGTICAILTTSFVYLSCVLLFAGTVDNL 46 (118)
Q Consensus 6 ~a~E~k~p~k~-iP~aii~s~~~~~~ly~~~~~~~~~~~~~~ 46 (118)
+..|.|+++++ ++|++..+..+..++|..+.+....+.+.+
T Consensus 215 i~~~~~~~~~~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~~~ 256 (415)
T COG0814 215 LVNYMRKNSKKAVRKAILIGSLIALVLYILVGFFVFGCFGSL 256 (415)
T ss_pred HHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 45788888777 999999999999999999999988888764
No 50
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=80.12 E-value=24 Score=26.85 Aligned_cols=87 Identities=11% Similarity=0.095 Sum_probs=48.6
Q ss_pred CccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhhhhcccchhhHHHhhcchhhHHHHHHHHHHHHHHH
Q psy13614 5 NRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDKFGQSIGGRLVVANIAWPNEWVILIGSFLSTIGA 84 (118)
Q Consensus 5 ~~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (118)
.+++|++++ |+.-+|-+.+-++.+++..+.+..+....+ .+.. +..|.. ..+...++.-..++.+...+..+.+
T Consensus 200 ~lg~~~~~~-~~~~~g~l~gglIlgvl~~l~nlsLi~~~~--~v~~-~dIP~l--~i~~~~~~~i~lvm~vIi~~~IytT 273 (349)
T COG3949 200 PLGGRMESR-KVSGIGGLIGGLILGVLLFLINLSLIALYD--KVVN-YDIPLL--TIAKNFSPLIGLVMSVIIWLEIYTT 273 (349)
T ss_pred hhccccccc-chhhhhhhhhhHHHHHHHHHHHHHHHhhcc--hhhc-cCCcHH--HHHHhccHHHHHHHHHHHHHHHHHH
Confidence 467899986 566677666767777777777776665544 2222 222321 1222333433334555555666777
Q ss_pred HHHHhhhHHHHHH
Q psy13614 85 GLQSLTGAPRLLQ 97 (118)
Q Consensus 85 ~~~~~~~~sR~~~ 97 (118)
..+.+++-++-+.
T Consensus 274 ~vg~iy~l~~r~~ 286 (349)
T COG3949 274 TVGLIYGLASRLT 286 (349)
T ss_pred HHHHHHHHHHhhc
Confidence 6666666544443
No 51
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=78.57 E-value=4.3 Score=31.57 Aligned_cols=96 Identities=10% Similarity=-0.032 Sum_probs=51.5
Q ss_pred CCccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhhhhcccchhhHHHhh-cchhhHHHHHHHHHHHHH
Q psy13614 4 SNRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDKFGQSIGGRLVVAN-IAWPNEWVILIGSFLSTI 82 (118)
Q Consensus 4 ~~~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 82 (118)
+|-+.|.++|.|.-=.+++.-.+-..++=.+..+++.....++.-.+..+.... ..++.+ .+..+.+++.+..++..+
T Consensus 242 a~a~a~~~hP~~QGl~~~~~vFiDTiiVCt~TalvIl~tG~~~~~~~~~g~~l~-~~Af~~~~g~~g~~~v~i~l~lFaf 320 (416)
T PF01235_consen 242 AHAAAETDHPVRQGLVQMFEVFIDTIIVCTITALVILVTGVWSWGSGLEGAALT-QAAFSTVLGSWGPYFVAIALFLFAF 320 (416)
T ss_pred HHHHhcCCCcHHHeeeeeehHhHHHHHHHHHHHHHhhccCCCCCCCcchHHHHH-HHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 345668899988877777644443333222333322222212111111111110 112222 222355678888888889
Q ss_pred HHHHHHhhhHHHHHHHhh
Q psy13614 83 GAGLQSLTGAPRLLQQGP 100 (118)
Q Consensus 83 ~~~~~~~~~~sR~~~a~a 100 (118)
++.+++.+...+.+.-+-
T Consensus 321 TTilg~~~yge~~~~yl~ 338 (416)
T PF01235_consen 321 TTILGWYYYGEKCAEYLF 338 (416)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 999999888888877766
No 52
>PRK09664 tryptophan permease TnaB; Provisional
Probab=72.37 E-value=44 Score=26.05 Aligned_cols=36 Identities=11% Similarity=0.209 Sum_probs=32.0
Q ss_pred ccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHh
Q psy13614 14 QRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLR 49 (118)
Q Consensus 14 ~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~ 49 (118)
.|.+.|+++.+..+-.++|++...++.+.+|++.+.
T Consensus 223 ~~~~~kaIl~Gs~IpLviY~~W~~~ilG~lp~~~~~ 258 (415)
T PRK09664 223 KDKLIKSVVFGSLLALVIYLFWLYCTMGNIPRESFK 258 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 467999999999999999999999999989887654
No 53
>PRK00968 tetrahydromethanopterin S-methyltransferase subunit D; Provisional
Probab=72.28 E-value=6.8 Score=27.79 Aligned_cols=31 Identities=16% Similarity=0.303 Sum_probs=23.6
Q ss_pred cccccccc-cChhHHHHHHHHHHHHHHHHHHH
Q psy13614 7 SGDLADAQ-RSIPTGTICAILTTSFVYLSCVL 37 (118)
Q Consensus 7 a~E~k~p~-k~iP~aii~s~~~~~~ly~~~~~ 37 (118)
-|-.+||| |.+||+++.+.+.+.+..+...+
T Consensus 204 IEGfHDPKFKr~p~~vias~vaS~~~gii~v~ 235 (240)
T PRK00968 204 IEGFHDPKFKRWPRAVIASFVASLVCGIVAVL 235 (240)
T ss_pred eecCCCcccccchHHHHHHHHHHHHHHHHHHH
Confidence 36678884 77999999999888776665444
No 54
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=68.44 E-value=30 Score=27.11 Aligned_cols=34 Identities=9% Similarity=0.144 Sum_probs=26.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhc
Q psy13614 68 PNEWVILIGSFLSTIGAGLQSLTGAPRLLQQGPK 101 (118)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~a~ar 101 (118)
.+..++.+...++++.++.+-+.+++.-...+.+
T Consensus 274 ~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~ 307 (427)
T PF05525_consen 274 AGQILLGIIVFLACLTTAIGLISACAEYFSELFP 307 (427)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3555667777888899999989999888887655
No 55
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=66.04 E-value=50 Score=25.86 Aligned_cols=99 Identities=7% Similarity=-0.039 Sum_probs=51.0
Q ss_pred CCccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhhhhcccchhhHHHhh-cchhhHHHHHHHHHHHHH
Q psy13614 4 SNRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDKFGQSIGGRLVVAN-IAWPNEWVILIGSFLSTI 82 (118)
Q Consensus 4 ~~~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 82 (118)
+|-+.|.++|.|..=.+++.-.+=..++=.+..+++.....++.-.+.++.... ..++.+ .+.++.+++.+..++..+
T Consensus 269 a~a~a~~~hP~~QGl~~~~~vfiDTivvCt~Talvil~tg~~~~~~~~~g~~lt-~~af~~~~g~~g~~~v~i~~~lFaf 347 (425)
T TIGR00835 269 AAAAAQVSHPVRQGLVQMLGVFIDTMIVCTATALVILLSGVWNNGEGLSGAQLT-QQALSYGLGSFGAVFVAVALFLFAF 347 (425)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCCCCCCcHHHHH-HHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 345677889988776666544332222222222222222112100010111111 112222 221245678888888899
Q ss_pred HHHHHHhhhHHHHHHHhhcCC
Q psy13614 83 GAGLQSLTGAPRLLQQGPKSD 103 (118)
Q Consensus 83 ~~~~~~~~~~sR~~~a~ardg 103 (118)
++.+++.+.+.+.+.-+-+++
T Consensus 348 tTii~~~yyge~~~~yl~~~~ 368 (425)
T TIGR00835 348 STIIGWYYYGEKNAEFLKGNK 368 (425)
T ss_pred HHHHHHHHHHHHHHHHhcCCC
Confidence 999999888888887775444
No 56
>KOG1303|consensus
Probab=62.58 E-value=9.7 Score=29.80 Aligned_cols=33 Identities=6% Similarity=0.235 Sum_probs=28.3
Q ss_pred ccccccccChhHHHHHHHHHHHHHHHHHHHHHHH
Q psy13614 8 GDLADAQRSIPTGTICAILTTSFVYLSCVLLFAG 41 (118)
Q Consensus 8 ~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~ 41 (118)
..+|+|+| .+|+.+.+..+++++|+.+++.--.
T Consensus 252 ~tMk~p~~-f~~~~lis~~~~~~~y~~vai~GY~ 284 (437)
T KOG1303|consen 252 HTMKSPPK-FKKALLISYIIVTFLYFPVAIIGYW 284 (437)
T ss_pred hhcCCchh-hhhHHHHHHHHHHHHHHHHHHhhhh
Confidence 46899987 9999999999999999998886333
No 57
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=62.11 E-value=54 Score=25.94 Aligned_cols=36 Identities=14% Similarity=-0.019 Sum_probs=28.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcCC
Q psy13614 68 PNEWVILIGSFLSTIGAGLQSLTGAPRLLQQGPKSD 103 (118)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~a~ardg 103 (118)
++..++.+.+++..+++.+++.+...|.+.-+-+++
T Consensus 350 ~G~~fv~i~l~lFafTTIlg~yyyge~~~~fl~~~k 385 (452)
T COG1115 350 WGSYFVAIALFLFAFTTILGWYYYGEKNIEFLFGSK 385 (452)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 356688888888899999999988888877776554
No 58
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=56.06 E-value=68 Score=25.27 Aligned_cols=33 Identities=6% Similarity=0.096 Sum_probs=25.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhh
Q psy13614 68 PNEWVILIGSFLSTIGAGLQSLTGAPRLLQQGP 100 (118)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~a~a 100 (118)
.+.++..+..++++++++.+.+.+.++-....-
T Consensus 278 ~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~ 310 (439)
T PRK15433 278 GGSFLLAALIFIACLVTAVGLTCACAEFFAQYV 310 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 355667777788899999999999988877653
No 59
>PTZ00206 amino acid transporter; Provisional
Probab=50.02 E-value=18 Score=28.25 Aligned_cols=36 Identities=8% Similarity=-0.050 Sum_probs=28.0
Q ss_pred cccccccc-ccChhHHHHHHHHHHHHHHHHHHHHHHH
Q psy13614 6 RSGDLADA-QRSIPTGTICAILTTSFVYLSCVLLFAG 41 (118)
Q Consensus 6 ~a~E~k~p-~k~iP~aii~s~~~~~~ly~~~~~~~~~ 41 (118)
+-+|+||| .|+..+.+..++.++.++|..+.+.--.
T Consensus 278 i~~~M~~~t~~~~~~v~~~s~~i~~~lY~~~G~~GYl 314 (467)
T PTZ00206 278 VYMDMTNRSVGKFVLASTIAMGMCFTMYVLTAFFGYM 314 (467)
T ss_pred HHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34688886 4678899999999999999988876333
No 60
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=49.71 E-value=94 Score=24.30 Aligned_cols=26 Identities=15% Similarity=0.396 Sum_probs=15.7
Q ss_pred ccccccChhHHHHHHHHHHHHHHHHHH
Q psy13614 10 LADAQRSIPTGTICAILTTSFVYLSCV 36 (118)
Q Consensus 10 ~k~p~k~iP~aii~s~~~~~~ly~~~~ 36 (118)
.||+ |+.-|+.+++.....++++...
T Consensus 263 aks~-~~a~~~~~~~~~~~~~~~~~~~ 288 (483)
T PRK09442 263 YKDS-KALHRGIIIGTIVVGFLMFGMH 288 (483)
T ss_pred cCCH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 4554 5677777777666555554443
No 61
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=47.87 E-value=5.9 Score=29.68 Aligned_cols=38 Identities=8% Similarity=0.096 Sum_probs=30.1
Q ss_pred Ccccccccccc--ChhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13614 5 NRSGDLADAQR--SIPTGTICAILTTSFVYLSCVLLFAGT 42 (118)
Q Consensus 5 ~~a~E~k~p~k--~iP~aii~s~~~~~~ly~~~~~~~~~~ 42 (118)
.+.+|+|+|+| ++-|....++.+.+++|..+.+.--..
T Consensus 213 ~i~~~m~~~~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~ 252 (409)
T PF01490_consen 213 PIQSEMKDPSKFKKMKKVLSISMIICFIIYLLFGIFGYLA 252 (409)
T ss_pred eeeeeccCCccccccceeeeehhhhhhHHhhhhhhcccce
Confidence 45689999875 466999999999999999888764433
No 62
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=46.33 E-value=1.2e+02 Score=23.54 Aligned_cols=27 Identities=15% Similarity=0.319 Sum_probs=17.5
Q ss_pred ccccccChhHHHHHHHHHHHHHHHHHHH
Q psy13614 10 LADAQRSIPTGTICAILTTSFVYLSCVL 37 (118)
Q Consensus 10 ~k~p~k~iP~aii~s~~~~~~ly~~~~~ 37 (118)
+||+ |+..|+.+.+..+..++++...+
T Consensus 262 ak~~-~~a~~~~~~~~~~~~~~~~~~~~ 288 (471)
T TIGR02119 262 YKDS-KAMHRAMIIGTIVVGIIMLGMHL 288 (471)
T ss_pred cCCH-HHHhhhHhHHHHHHHHHHHHHHH
Confidence 4554 67888888887666665554443
No 63
>PHA02844 putative transmembrane protein; Provisional
Probab=45.08 E-value=47 Score=19.49 Aligned_cols=26 Identities=12% Similarity=0.132 Sum_probs=13.5
Q ss_pred ccccccccccChhHHHHHHHHHHHHH
Q psy13614 6 RSGDLADAQRSIPTGTICAILTTSFV 31 (118)
Q Consensus 6 ~a~E~k~p~k~iP~aii~s~~~~~~l 31 (118)
+++|-++|.++.-++.-+..++..++
T Consensus 31 Ltd~~~s~~~~~~~~~~~~~~ii~i~ 56 (75)
T PHA02844 31 LSDDYDGVNKNNVCSSSTKIWILTII 56 (75)
T ss_pred HcCCCCCccccccCChhHHHHHHHHH
Confidence 34555666665555555555554433
No 64
>PF11169 DUF2956: Protein of unknown function (DUF2956); InterPro: IPR021339 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=43.68 E-value=34 Score=21.37 Aligned_cols=22 Identities=14% Similarity=0.176 Sum_probs=18.3
Q ss_pred ccChhHHHHHHHHHHHHHHHHH
Q psy13614 14 QRSIPTGTICAILTTSFVYLSC 35 (118)
Q Consensus 14 ~k~iP~aii~s~~~~~~ly~~~ 35 (118)
..-+|++++.-.+++++.|+++
T Consensus 82 ~~~LPW~LL~lSW~gF~~Y~~~ 103 (103)
T PF11169_consen 82 SSWLPWGLLVLSWIGFIAYIFM 103 (103)
T ss_pred ccchhHHHHHHHHHHHHHHHHC
Confidence 4569999999999999998863
No 65
>KOG4753|consensus
Probab=42.16 E-value=28 Score=22.35 Aligned_cols=28 Identities=7% Similarity=0.143 Sum_probs=18.1
Q ss_pred cccccccccChhHHHHHHHHHHHHHHHH
Q psy13614 7 SGDLADAQRSIPTGTICAILTTSFVYLS 34 (118)
Q Consensus 7 a~E~k~p~k~iP~aii~s~~~~~~ly~~ 34 (118)
.+|.|.|.|.+-++..+......++.+.
T Consensus 41 ~s~tr~P~k~i~lavvL~~fg~Lli~lg 68 (124)
T KOG4753|consen 41 VSNTRHPVKEIALAVVLLVFGLLLIGLG 68 (124)
T ss_pred cCCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888887777665555444433
No 66
>PF14715 FixP_N: N-terminal domain of cytochrome oxidase-cbb3, FixP
Probab=41.99 E-value=58 Score=17.58 Aligned_cols=26 Identities=12% Similarity=0.172 Sum_probs=15.3
Q ss_pred ccccccccChhHHHHHHHHHHHHHHHHHH
Q psy13614 8 GDLADAQRSIPTGTICAILTTSFVYLSCV 36 (118)
Q Consensus 8 ~E~k~p~k~iP~aii~s~~~~~~ly~~~~ 36 (118)
+|..|| +||--+....+..+.-+...
T Consensus 14 ~E~dnp---lP~ww~~~f~~tivfa~~Y~ 39 (51)
T PF14715_consen 14 RELDNP---LPRWWLWLFYGTIVFAVGYL 39 (51)
T ss_pred hhhcCC---CCHHHHHHHHHHHHHHHHHH
Confidence 455555 88887766665555444333
No 67
>PF11998 DUF3493: Protein of unknown function (DUF3493); InterPro: IPR021883 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 79 to 331 amino acids in length.
Probab=41.89 E-value=33 Score=20.16 Aligned_cols=33 Identities=12% Similarity=-0.040 Sum_probs=26.8
Q ss_pred ccccccccccChhHHHHHHHHHHHHHHHHHHHH
Q psy13614 6 RSGDLADAQRSIPTGTICAILTTSFVYLSCVLL 38 (118)
Q Consensus 6 ~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~ 38 (118)
+=+|++.|=|.+-+-+..+...+..+...+.+.
T Consensus 9 LraE~~aPfR~lR~f~y~a~~aSa~iG~~i~~~ 41 (75)
T PF11998_consen 9 LRAEAQAPFRGLRRFFYGAFGASAGIGLFIFLF 41 (75)
T ss_pred HHHHHHCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346999999999999999988888877766554
No 68
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=38.22 E-value=1.3e+02 Score=22.80 Aligned_cols=21 Identities=19% Similarity=0.363 Sum_probs=13.2
Q ss_pred ccChhHHHHHHHHHHHHHHHH
Q psy13614 14 QRSIPTGTICAILTTSFVYLS 34 (118)
Q Consensus 14 ~k~iP~aii~s~~~~~~ly~~ 34 (118)
+|+..|+.+.+.....+++..
T Consensus 231 ~~~ar~~~~~~~~~~~~~~~~ 251 (406)
T PF00474_consen 231 PKTARKGMLIAIIFLIIFYFL 251 (406)
T ss_dssp HHHHHHHHHHHHGGGTTHHHH
T ss_pred HHHHHHHHhHHhhhheeeehH
Confidence 357888887776555544444
No 69
>COG4060 MtrD Tetrahydromethanopterin S-methyltransferase, subunit D [Coenzyme metabolism]
Probab=38.18 E-value=60 Score=22.49 Aligned_cols=27 Identities=11% Similarity=0.377 Sum_probs=20.6
Q ss_pred ccccccc-cChhHHHHHHHHHHHHHHHH
Q psy13614 8 GDLADAQ-RSIPTGTICAILTTSFVYLS 34 (118)
Q Consensus 8 ~E~k~p~-k~iP~aii~s~~~~~~ly~~ 34 (118)
|..+||+ |.+||+.+.+.+...+..++
T Consensus 195 EGfHDPKfkk~pk~vias~vasil~~ii 222 (230)
T COG4060 195 EGFHDPKFKKLPKAVIASLVASILAGII 222 (230)
T ss_pred ecccChhhhccchHHHHHHHHHHHHHHH
Confidence 6678995 77999999888777665443
No 70
>PLN03074 auxin influx permease; Provisional
Probab=34.57 E-value=36 Score=26.81 Aligned_cols=31 Identities=13% Similarity=-0.032 Sum_probs=23.9
Q ss_pred cccccccccChhHHHHHHHHHHHHHHHHHHHH
Q psy13614 7 SGDLADAQRSIPTGTICAILTTSFVYLSCVLL 38 (118)
Q Consensus 7 a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~ 38 (118)
=.|+|||+ +-|+....+......+|+...+.
T Consensus 256 ~~~M~~P~-~F~~~~~l~~~~v~~~y~~~~~~ 286 (473)
T PLN03074 256 MHAMWKPQ-KFKYIYLAATLYVLTLTLPSAAA 286 (473)
T ss_pred HHhccChh-cccchHHHHHHHHHHHHHHHHHe
Confidence 35899996 48888888888888888876553
No 71
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=34.13 E-value=68 Score=24.86 Aligned_cols=28 Identities=4% Similarity=0.133 Sum_probs=21.8
Q ss_pred ccccChhHHHHHHHHHHHHHHHHHHHHH
Q psy13614 12 DAQRSIPTGTICAILTTSFVYLSCVLLF 39 (118)
Q Consensus 12 ~p~k~iP~aii~s~~~~~~ly~~~~~~~ 39 (118)
...++..+++++|+++.++|..++.+..
T Consensus 6 ~~~~~~~~aiiiSv~LHvlLi~lLi~gs 33 (387)
T PRK09510 6 EQNDKLKRAIIISVVLHIILFALLIWSS 33 (387)
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHh
Confidence 3467888999999999988877776543
No 72
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=33.00 E-value=1.2e+02 Score=22.65 Aligned_cols=33 Identities=12% Similarity=0.221 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhc
Q psy13614 69 NEWVILIGSFLSTIGAGLQSLTGAPRLLQQGPK 101 (118)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~sR~~~a~ar 101 (118)
+.++..++.+.+.+++......+.++.+..+-+
T Consensus 254 a~~lF~igl~~a~fss~i~~~~~~~~~~~~~~~ 286 (358)
T PF01566_consen 254 ARYLFAIGLFAAGFSSSITATLAGAYVLADFLG 286 (358)
T ss_pred HHHhHHHHHHHHHHhhHHHhccccceehHhhhc
Confidence 456788888999999999888888888877654
No 73
>PF06939 DUF1286: Protein of unknown function (DUF1286); InterPro: IPR009705 This entry is represented by Sulfolobus virus STSV1, Orf8. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical archaeal proteins of around 120 residues in length. All members of this family seem to be Sulfolobus species specific. The function of this family is unknown.
Probab=32.73 E-value=65 Score=20.49 Aligned_cols=17 Identities=6% Similarity=0.356 Sum_probs=12.7
Q ss_pred cChhHHHHHHHHHHHHH
Q psy13614 15 RSIPTGTICAILTTSFV 31 (118)
Q Consensus 15 k~iP~aii~s~~~~~~l 31 (118)
.++||++.++++.+.-+
T Consensus 66 HT~pRSv~WGli~slp~ 82 (114)
T PF06939_consen 66 HTLPRSVLWGLIPSLPL 82 (114)
T ss_pred cCcchhhHHHHHHHHHH
Confidence 57888888888777653
No 74
>PF13150 DUF3989: Protein of unknown function (DUF3989)
Probab=32.15 E-value=1.2e+02 Score=18.22 Aligned_cols=27 Identities=7% Similarity=-0.212 Sum_probs=19.1
Q ss_pred HhhhHHHHHHHhhc-CCCccCCCCCCCC
Q psy13614 88 SLTGAPRLLQQGPK-SDIIRTEDNRLKP 114 (118)
Q Consensus 88 ~~~~~sR~~~a~ar-dg~lP~~~~~~k~ 114 (118)
+++...+.+|.+++ ||.-|...++.++
T Consensus 42 ~ly~~~~ai~~~Gk~~g~~~~IeHI~~l 69 (85)
T PF13150_consen 42 CLYMTVSAIYDIGKEDGERMEIEHIRPL 69 (85)
T ss_pred HHHHHHHHHHHhccCcccCccceecccc
Confidence 58888899999994 6666665555443
No 75
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=30.43 E-value=2.2e+02 Score=20.79 Aligned_cols=41 Identities=17% Similarity=0.286 Sum_probs=34.1
Q ss_pred cccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhh
Q psy13614 9 DLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRD 50 (118)
Q Consensus 9 E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~ 50 (118)
.+||+ |+..|....+..++.++|....+...+..+++..+.
T Consensus 200 ~~~~~-~~~~k~~~~~~~~~~~~~~~~~~~~i~vfG~~~~~~ 240 (320)
T PF03845_consen 200 FVKDK-KKLKKSLLIAILISGLFLLFIIFITIGVFGPELAKK 240 (320)
T ss_pred HcCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHhc
Confidence 46776 457899999999999999999999899888876554
No 76
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=30.14 E-value=79 Score=24.00 Aligned_cols=29 Identities=3% Similarity=0.044 Sum_probs=22.4
Q ss_pred ccccChhHHHHHHHHHHHHHHHHHHHHHH
Q psy13614 12 DAQRSIPTGTICAILTTSFVYLSCVLLFA 40 (118)
Q Consensus 12 ~p~k~iP~aii~s~~~~~~ly~~~~~~~~ 40 (118)
+-..+.-|++++|+++.++||-++.+.-.
T Consensus 6 ~qn~k~~~AiiiS~vLH~iLfalLIwgS~ 34 (387)
T COG3064 6 EQNDKLKRAIIISAVLHIILFALLIWGSL 34 (387)
T ss_pred hccccchhHHhHHHHHHHHHHHHHHHhhh
Confidence 34557889999999999998887766533
No 77
>KOG1304|consensus
Probab=30.05 E-value=62 Score=25.60 Aligned_cols=30 Identities=10% Similarity=0.177 Sum_probs=24.9
Q ss_pred ccccccccChh---HHHHHHHHHHHHHHHHHHHH
Q psy13614 8 GDLADAQRSIP---TGTICAILTTSFVYLSCVLL 38 (118)
Q Consensus 8 ~E~k~p~k~iP---~aii~s~~~~~~ly~~~~~~ 38 (118)
+++|+|+ +.| ..+-.++.++.++|...-+.
T Consensus 265 n~Mk~P~-~F~g~~gVLn~~M~~V~~ly~~~Gf~ 297 (449)
T KOG1304|consen 265 NSMKKPQ-KFPGPFGVLNLGMGIVTLLYIFLGFF 297 (449)
T ss_pred hcccChh-hcCCccchHHHHHHHHHHHHHHHHHH
Confidence 6899996 477 89999999999999977664
No 78
>cd00927 Cyt_c_Oxidase_VIc Cytochrome c oxidase subunit VIc. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. The VIc subunit is found only in eukaryotes and its specific function remains unclear. It has been reported that the relative concentrations of some nuclear encoded CcO subunits, including subunit VIc, compared to those of the mitochondrial encoded subunits, are altered significantly during the progression of prostate cancer.
Probab=29.25 E-value=68 Score=18.62 Aligned_cols=20 Identities=5% Similarity=0.075 Sum_probs=11.8
Q ss_pred ccChhHHHHHHHHHHHHHHH
Q psy13614 14 QRSIPTGTICAILTTSFVYL 33 (118)
Q Consensus 14 ~k~iP~aii~s~~~~~~ly~ 33 (118)
+++++-+..+++.....+++
T Consensus 16 ~~~l~~a~~lsl~~~~~~k~ 35 (70)
T cd00927 16 KRHLIVAFVLSLGAAAAYKF 35 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666555554
No 79
>PF12955 DUF3844: Domain of unknown function (DUF3844); InterPro: IPR024382 This presumed domain is found in fungal species. It contains 8 largely conserved cysteine residues. This domain is found in proteins thought to be located in the endoplasmic reticulum.
Probab=29.20 E-value=1.2e+02 Score=18.91 Aligned_cols=37 Identities=14% Similarity=0.051 Sum_probs=26.8
Q ss_pred cccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHh
Q psy13614 13 AQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLR 49 (118)
Q Consensus 13 p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~ 49 (118)
-..+.|--++....+..++-+...+.+.+.++.+.|.
T Consensus 62 kDvS~~F~L~~~~ti~lv~~~~~~I~lL~svG~e~LP 98 (103)
T PF12955_consen 62 KDVSVPFWLFAGFTIALVVLVAGAIGLLFSVGSEELP 98 (103)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 3456777777777777777777777788887776654
No 80
>KOG4505|consensus
Probab=27.91 E-value=2.7e+02 Score=21.72 Aligned_cols=44 Identities=14% Similarity=0.108 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhhcCCCccCCCCCCCCCC
Q psy13614 73 ILIGSFLSTIGAGLQSLTGAPRLLQQGPKSDIIRTEDNRLKPGS 116 (118)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~sR~~~a~ardg~lP~~~~~~k~~~ 116 (118)
......++.++.+++.+++..-++..+..--.+...+||+|.++
T Consensus 245 l~~~vvl~lfc~gigtiiGvddLl~sFfAGi~Fswd~wFsk~t~ 288 (467)
T KOG4505|consen 245 LIFYVVLALFCMGIGTIIGVDDLLVSFFAGIVFSWDEWFSKKTK 288 (467)
T ss_pred HHHHHHHHHHHhhhhheechhHHHHHHHhhhhcchhHHhhhhhh
Confidence 44445566677777788888888888776555566666766554
No 81
>PHA03164 hypothetical protein; Provisional
Probab=26.64 E-value=78 Score=18.74 Aligned_cols=30 Identities=7% Similarity=0.176 Sum_probs=19.6
Q ss_pred ccccccccChhHHHHHHHHHHHHHHHHHHH
Q psy13614 8 GDLADAQRSIPTGTICAILTTSFVYLSCVL 37 (118)
Q Consensus 8 ~E~k~p~k~iP~aii~s~~~~~~ly~~~~~ 37 (118)
.|.+|-+|..---++.++.+..++++++.+
T Consensus 49 nlwnnrRktftFlvLtgLaIamILfiifvl 78 (88)
T PHA03164 49 NLWNNRRKTFTFLVLTGLAIAMILFIIFVL 78 (88)
T ss_pred HHHHhhhheeehHHHHHHHHHHHHHHHHHH
Confidence 456677777666666677777766665544
No 82
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=26.56 E-value=1.2e+02 Score=21.57 Aligned_cols=28 Identities=25% Similarity=0.540 Sum_probs=21.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy13614 16 SIPTGTICAILTTSFVYLSCVLLFAGTV 43 (118)
Q Consensus 16 ~iP~aii~s~~~~~~ly~~~~~~~~~~~ 43 (118)
+=-.+|+++++++.+++++..+.+...+
T Consensus 125 ~~K~amLIClIIIAVLfLICT~LfLSTV 152 (227)
T PF05399_consen 125 NNKMAMLICLIIIAVLFLICTLLFLSTV 152 (227)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467899999999988888777655544
No 83
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=23.51 E-value=2e+02 Score=17.95 Aligned_cols=37 Identities=11% Similarity=-0.013 Sum_probs=31.0
Q ss_pred cccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy13614 7 SGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTV 43 (118)
Q Consensus 7 a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~ 43 (118)
..|+|-...--|+.|++-.+..++.-+.+...+.+|+
T Consensus 6 vs~~KPsGsL~PWeIfLItLasVvvavGl~aGLfFcv 42 (106)
T PF14654_consen 6 VSEVKPSGSLKPWEIFLITLASVVVAVGLFAGLFFCV 42 (106)
T ss_pred ccccccCCCccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4577766777899999998888888888888888888
No 84
>TIGR00782 ccoP cytochrome c oxidase, cbb3-type, subunit III. This model describes a di-heme subunit of approximately 26 kDa of the cbb3 type copper and heme-containing cytochrome oxidase.
Probab=23.47 E-value=1.2e+02 Score=22.07 Aligned_cols=27 Identities=7% Similarity=0.132 Sum_probs=18.7
Q ss_pred ccccccccChhHHHHHHHHHHHHHHHHHHH
Q psy13614 8 GDLADAQRSIPTGTICAILTTSFVYLSCVL 37 (118)
Q Consensus 8 ~E~k~p~k~iP~aii~s~~~~~~ly~~~~~ 37 (118)
+|..|| +||.-++.+..++++-+.+.+
T Consensus 20 ~E~~n~---~P~ww~~~f~~~i~~~~~y~~ 46 (285)
T TIGR00782 20 EEYDNP---LPRWWLWTFYATIVWGFGYLV 46 (285)
T ss_pred hhhcCC---CCHHHHHHHHHHHHHHHHHHH
Confidence 456665 999988888777766555533
No 85
>COG3197 FixS Uncharacterized protein, possibly involved in nitrogen fixation [Inorganic ion transport and metabolism]
Probab=23.46 E-value=1.2e+02 Score=16.97 Aligned_cols=14 Identities=14% Similarity=0.237 Sum_probs=6.2
Q ss_pred hhHHHHHHHHHHHH
Q psy13614 17 IPTGTICAILTTSF 30 (118)
Q Consensus 17 iP~aii~s~~~~~~ 30 (118)
+|.+++...+....
T Consensus 8 ipvsi~l~~v~l~~ 21 (58)
T COG3197 8 IPVSILLGAVGLGA 21 (58)
T ss_pred HHHHHHHHHHHHHH
Confidence 45454444444333
No 86
>PF03994 DUF350: Domain of Unknown Function (DUF350) ; InterPro: IPR007140 This motif occurs in a small set of bacterial proteins. It has two transmembrane regions, and often occurs as tandem repeats. The are no conserved catalytic residues.
Probab=23.13 E-value=1.2e+02 Score=16.04 Aligned_cols=24 Identities=4% Similarity=0.122 Sum_probs=15.7
Q ss_pred CCccccccccccChhHHHHHHHHHHH
Q psy13614 4 SNRSGDLADAQRSIPTGTICAILTTS 29 (118)
Q Consensus 4 ~~~a~E~k~p~k~iP~aii~s~~~~~ 29 (118)
.+..||+++. |++-|+..+.....
T Consensus 22 ~~~~~eI~~~--N~a~ai~~~~~~ia 45 (54)
T PF03994_consen 22 YDLREEIKKG--NVAAAIVLAGIFIA 45 (54)
T ss_pred CChHHHHhCC--CcCHHHHHHHHHHH
Confidence 3567888875 88877765554443
No 87
>KOG4152|consensus
Probab=22.13 E-value=39 Score=27.56 Aligned_cols=15 Identities=20% Similarity=0.359 Sum_probs=10.0
Q ss_pred ccccccccccChhHH
Q psy13614 6 RSGDLADAQRSIPTG 20 (118)
Q Consensus 6 ~a~E~k~p~k~iP~a 20 (118)
++.|..||++|+||=
T Consensus 155 LaNdseDpknNvPrY 169 (830)
T KOG4152|consen 155 LANDSEDPKNNVPRY 169 (830)
T ss_pred ccccccCcccccchh
Confidence 466777777777763
No 88
>KOG1305|consensus
Probab=21.99 E-value=1.1e+02 Score=23.92 Aligned_cols=33 Identities=24% Similarity=0.332 Sum_probs=26.9
Q ss_pred cccccccc-ccChhHHHHHHHHHHHHHHHHHHHH
Q psy13614 6 RSGDLADA-QRSIPTGTICAILTTSFVYLSCVLL 38 (118)
Q Consensus 6 ~a~E~k~p-~k~iP~aii~s~~~~~~ly~~~~~~ 38 (118)
+-.|.||| .|++-+....+...+.++|....+.
T Consensus 216 i~~El~~~s~~~i~~v~~~~~~~~~~iy~~~g~~ 249 (411)
T KOG1305|consen 216 IYNELKDRSVKKIQRVSNIAIILATLIYLLTGLF 249 (411)
T ss_pred eeeeeeCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45789998 5678888888999999999887775
No 89
>COG3695 Predicted methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair]
Probab=21.31 E-value=67 Score=20.07 Aligned_cols=25 Identities=20% Similarity=0.223 Sum_probs=17.3
Q ss_pred hHHHHHHHhhcCCCccCCCCCCCCCCCC
Q psy13614 91 GAPRLLQQGPKSDIIRTEDNRLKPGSQG 118 (118)
Q Consensus 91 ~~sR~~~a~ardg~lP~~~~~~k~~~~~ 118 (118)
-.+|++..+.+|..+|. ++-+|++|
T Consensus 41 qVG~il~~l~~~s~lPW---hRVvns~G 65 (103)
T COG3695 41 QVGRILKHLPEGSDLPW---HRVVNSDG 65 (103)
T ss_pred HHHHHHhhCCCCCCCCh---hheecCCC
Confidence 35678888888999995 44455544
No 90
>PHA02819 hypothetical protein; Provisional
Probab=21.21 E-value=1.9e+02 Score=16.84 Aligned_cols=20 Identities=5% Similarity=0.061 Sum_probs=9.6
Q ss_pred cccccChhHHHHHHHHHHHH
Q psy13614 11 ADAQRSIPTGTICAILTTSF 30 (118)
Q Consensus 11 k~p~k~iP~aii~s~~~~~~ 30 (118)
++|.++..++..+..++..+
T Consensus 34 ~s~~~~~~~~~~~~~~ii~l 53 (71)
T PHA02819 34 ENYNKKTKKSFLRYYLIIGL 53 (71)
T ss_pred CCCcccccCChhHHHHHHHH
Confidence 55555444444444444443
No 91
>PF15179 Myc_target_1: Myc target protein 1
Probab=20.55 E-value=1.5e+02 Score=20.59 Aligned_cols=7 Identities=0% Similarity=0.354 Sum_probs=2.6
Q ss_pred HHHHHHH
Q psy13614 27 TTSFVYL 33 (118)
Q Consensus 27 ~~~~ly~ 33 (118)
+++++|+
T Consensus 35 iG~li~~ 41 (197)
T PF15179_consen 35 IGALIWA 41 (197)
T ss_pred HHHHHHH
Confidence 3333333
No 92
>PF02937 COX6C: Cytochrome c oxidase subunit VIc; InterPro: IPR004204 Cytochrome c oxidase, a 13 subunit complex, 1.9.3.1 from EC is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of cytochrome c oxidase subunit VIc.; GO: 0004129 cytochrome-c oxidase activity; PDB: 3AG4_I 2DYS_V 3ASO_I 2EIK_V 2EIM_I 1OCC_V 1V54_V 1OCO_V 3ASN_V 2EIL_I ....
Probab=20.49 E-value=90 Score=18.16 Aligned_cols=12 Identities=8% Similarity=0.238 Sum_probs=4.7
Q ss_pred hhHHHHHHHHHH
Q psy13614 17 IPTGTICAILTT 28 (118)
Q Consensus 17 iP~aii~s~~~~ 28 (118)
+.+.++.++.++
T Consensus 17 l~~~i~~a~~ls 28 (73)
T PF02937_consen 17 LKRHIVVAFVLS 28 (73)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333444443333
No 93
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=20.10 E-value=1.9e+02 Score=16.62 Aligned_cols=8 Identities=0% Similarity=-0.355 Sum_probs=3.7
Q ss_pred cccccccc
Q psy13614 6 RSGDLADA 13 (118)
Q Consensus 6 ~a~E~k~p 13 (118)
+-++...|
T Consensus 43 ivd~A~~P 50 (82)
T PF13807_consen 43 IVDPAIVP 50 (82)
T ss_pred eccccccC
Confidence 34444445
Done!