Query psy13614
Match_columns 118
No_of_seqs 127 out of 1039
Neff 8.7
Searched_HMMs 29240
Date Fri Aug 16 15:42:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13614.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13614hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4djk_A Probable glutamate/gamm 99.8 1.8E-20 6.1E-25 142.7 9.0 113 2-118 219-336 (511)
2 3gia_A Uncharacterized protein 99.8 1.1E-19 3.6E-24 136.3 10.2 112 3-118 207-319 (444)
3 3l1l_A Arginine/agmatine antip 99.8 1.7E-19 5.7E-24 135.2 7.1 112 3-118 210-321 (445)
4 1v54_I STA, cytochrome C oxida 29.8 30 0.001 19.4 1.8 18 15-32 19-36 (73)
5 3mk7_C Cytochrome C oxidase, C 28.7 63 0.0022 22.7 3.8 29 10-38 47-75 (311)
6 4djc_B Sodium channel protein 26.6 16 0.00056 17.3 0.3 9 11-19 17-25 (35)
7 2xq2_A Sodium/glucose cotransp 21.3 1.8E+02 0.006 22.4 5.3 24 9-33 276-299 (593)
8 1nc8_A Nucleocapsid protein; H 21.1 37 0.0013 15.0 0.9 12 4-15 16-27 (29)
9 2jwa_A Receptor tyrosine-prote 15.3 1.3E+02 0.0046 15.0 4.5 26 15-40 7-32 (44)
10 1dsq_A Nucleic acid binding pr 13.3 65 0.0022 13.7 0.7 12 4-15 12-23 (26)
No 1
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=99.83 E-value=1.8e-20 Score=142.68 Aligned_cols=113 Identities=12% Similarity=0.119 Sum_probs=89.4
Q ss_pred CCCCccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhhhhcccchhhH--HHhhcc---hhhHHHHHHH
Q psy13614 2 AGSNRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDKFGQSIGGRL--VVANIA---WPNEWVILIG 76 (118)
Q Consensus 2 ~~~~~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~---~~~~~~~~~~ 76 (118)
+.+|++||+|||+|++|||++.++.++.++|++.++++..+++++++..++. ....+ ..+..+ .....++.+.
T Consensus 219 ~~~~~a~E~k~P~k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~ 296 (511)
T 4djk_A 219 ASATHVNEMSNPGRDYPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAG--VMQTFTVLMSHVAPEIEWTVRVISAL 296 (511)
T ss_dssp GGTGGGSSSSCCTTTHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSCCSSST--HHHHHHHHHSSSCSSCTTHHHHHHHH
T ss_pred HHHHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHeecCHhhccccch--HHHHHHHHHHHhCccchHHHHHHHHH
Confidence 4689999999999999999999999999999999999999998876543321 11111 222222 1123466777
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHhhcCCCccCCCCCCCCCCCC
Q psy13614 77 SFLSTIGAGLQSLTGAPRLLQQGPKSDIIRTEDNRLKPGSQG 118 (118)
Q Consensus 77 ~~~~~~~~~~~~~~~~sR~~~a~ardg~lP~~~~~~k~~~~~ 118 (118)
.+++.+++.++.+++.+|++|+|||||.+| ++|+|+|++|
T Consensus 297 ~~~~~~~~~~~~~~~~sR~l~a~ardg~lP--~~~~~~~~~~ 336 (511)
T 4djk_A 297 LLLGVLAEIASWIVGPSRGMYVTAQKNLLP--AAFAKMNKNG 336 (511)
T ss_dssp HHHHHHHHHHHHTTHHHHHTCHHHHGGGCS--SSCCCCCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCccc--HHHHhcCCCC
Confidence 788899999999999999999999999999 5699999874
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=99.81 E-value=1.1e-19 Score=136.32 Aligned_cols=112 Identities=15% Similarity=0.135 Sum_probs=89.4
Q ss_pred CCCccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhhhhcccchhhHHHhh-cchhhHHHHHHHHHHHH
Q psy13614 3 GSNRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDKFGQSIGGRLVVAN-IAWPNEWVILIGSFLST 81 (118)
Q Consensus 3 ~~~~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 81 (118)
.++++||+|||+|++||+++.++.+..++|++.+++.....+++++.++...+... .... .+..+..++.++.+++.
T Consensus 207 ~~~~~~e~k~P~r~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~g~~~~~~i~~~~~~~~ 284 (444)
T 3gia_A 207 ITNASEHIENPKKNVPRAIFISILIVMFVYVGVAISAIGNLPIDELIKASENALAV--AAKPFLGNLGFLLISIGALFSI 284 (444)
T ss_dssp HHTTGGGBSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTGGGHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCcccchhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhcccchhHHH--HHHHHhhHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999988776543333211 1111 11123346777888999
Q ss_pred HHHHHHHhhhHHHHHHHhhcCCCccCCCCCCCCCCCC
Q psy13614 82 IGAGLQSLTGAPRLLQQGPKSDIIRTEDNRLKPGSQG 118 (118)
Q Consensus 82 ~~~~~~~~~~~sR~~~a~ardg~lP~~~~~~k~~~~~ 118 (118)
+++.++.+++.+|++|+|||||.+|+ +|+|+|+++
T Consensus 285 ~~~~~~~~~~~sR~l~a~a~dg~lP~--~f~~~~~~~ 319 (444)
T 3gia_A 285 SSAMNATIYGGANVAYSLAKDGELPE--FFERKVWFK 319 (444)
T ss_dssp HHHHHHHHTTTHHHHHHHHHHSSCCS--SCCTTSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCH--HHhCCCCCC
Confidence 99999999999999999999999995 599998764
No 3
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=99.78 E-value=1.7e-19 Score=135.18 Aligned_cols=112 Identities=15% Similarity=0.144 Sum_probs=88.8
Q ss_pred CCCccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhhhhcccchhhHHHhhcchhhHHHHHHHHHHHHH
Q psy13614 3 GSNRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDKFGQSIGGRLVVANIAWPNEWVILIGSFLSTI 82 (118)
Q Consensus 3 ~~~~a~E~k~p~k~iP~aii~s~~~~~~ly~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (118)
.++++||+|||+|++||+++.++.+..++|++.+++.....|++++.+.. .|...........| ...++.++.+++.+
T Consensus 210 ~~~~~~e~k~p~r~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~~g~~-~~~~~~~~~~~~~~ 287 (445)
T 3l1l_A 210 ASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSA-SPFGDAARMALGDT-AGAIVSFCAAAGCL 287 (445)
T ss_dssp HHHGGGGBSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTSCSTT-CTHHHHHHHHHCTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhccC-cHHHHHHHHHhhHH-HHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999998887664332 22211111101122 34567778888999
Q ss_pred HHHHHHhhhHHHHHHHhhcCCCccCCCCCCCCCCCC
Q psy13614 83 GAGLQSLTGAPRLLQQGPKSDIIRTEDNRLKPGSQG 118 (118)
Q Consensus 83 ~~~~~~~~~~sR~~~a~ardg~lP~~~~~~k~~~~~ 118 (118)
++.++.+++.+|++|+|||||.+| ++|+|+|++|
T Consensus 288 ~~~~~~~~~~sR~~~~~a~dg~lP--~~~~~~~~~~ 321 (445)
T 3l1l_A 288 GSLGGWTLLAGQTAKAAADDGLFP--PIFARVNKAG 321 (445)
T ss_dssp TTHHHHHHHHHHHHHHHHHTTSSC--GGGGCCCTTC
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCc--HHHHhcCCCC
Confidence 999999999999999999999999 5599999874
No 4
>1v54_I STA, cytochrome C oxidase polypeptide VIC; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.3.1 PDB: 1oco_I* 1occ_I* 1ocz_I* 1ocr_I* 1v55_I* 2dyr_I* 2dys_I* 2eij_I* 2eik_I* 2eil_I* 2eim_I* 2ein_I* 2occ_I* 2ybb_T* 2zxw_I* 3abk_I* 3abl_I* 3abm_I* 3ag1_I* 3ag2_I* ...
Probab=29.79 E-value=30 Score=19.40 Aligned_cols=18 Identities=11% Similarity=0.034 Sum_probs=7.8
Q ss_pred cChhHHHHHHHHHHHHHH
Q psy13614 15 RSIPTGTICAILTTSFVY 32 (118)
Q Consensus 15 k~iP~aii~s~~~~~~ly 32 (118)
++++-+++.++...+.++
T Consensus 19 ~~i~~a~~lsl~~~~~~k 36 (73)
T 1v54_I 19 FHIVGAFMVSLGFATFYK 36 (73)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 5
>3mk7_C Cytochrome C oxidase, CBB3-type, subunit P; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}
Probab=28.70 E-value=63 Score=22.69 Aligned_cols=29 Identities=10% Similarity=0.151 Sum_probs=18.7
Q ss_pred ccccccChhHHHHHHHHHHHHHHHHHHHH
Q psy13614 10 LADAQRSIPTGTICAILTTSFVYLSCVLL 38 (118)
Q Consensus 10 ~k~p~k~iP~aii~s~~~~~~ly~~~~~~ 38 (118)
+++=.+.+||-.+..+.+.+++-+.+.+.
T Consensus 47 i~e~~nplp~ww~~~f~~~iv~~~~y~~~ 75 (311)
T 3mk7_C 47 IEEYDNPLPRWWFLLFIGTLVFGILYLVL 75 (311)
T ss_dssp BCBCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccCCCChHHHHHHHHHHHHHHHHHHH
Confidence 33334459999888877777665555554
No 6
>4djc_B Sodium channel protein type 5 subunit alpha; EF-hand, calcium-binding protein; 1.35A {Homo sapiens}
Probab=26.56 E-value=16 Score=17.34 Aligned_cols=9 Identities=33% Similarity=0.652 Sum_probs=7.0
Q ss_pred cccccChhH
Q psy13614 11 ADAQRSIPT 19 (118)
Q Consensus 11 k~p~k~iP~ 19 (118)
++|.|.+||
T Consensus 17 kkp~K~ipr 25 (35)
T 4djc_B 17 KKPQKPIPR 25 (35)
T ss_pred cCCCCCcCC
Confidence 568888886
No 7
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=21.32 E-value=1.8e+02 Score=22.40 Aligned_cols=24 Identities=13% Similarity=0.144 Sum_probs=14.5
Q ss_pred cccccccChhHHHHHHHHHHHHHHH
Q psy13614 9 DLADAQRSIPTGTICAILTTSFVYL 33 (118)
Q Consensus 9 E~k~p~k~iP~aii~s~~~~~~ly~ 33 (118)
+.||+ |+..|+.+.+.....++.+
T Consensus 276 aaks~-k~ar~~~~~~~~~~~~~~~ 299 (593)
T 2xq2_A 276 AAKSV-SEAQKGIVFAAFLALIVPF 299 (593)
T ss_dssp TTSCH-HHHHHHHHHHHHHTTTHHH
T ss_pred eeCCH-HHHHHHHHHHHHHHHHHHH
Confidence 35665 6777887777665444433
No 8
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=21.09 E-value=37 Score=15.01 Aligned_cols=12 Identities=8% Similarity=0.183 Sum_probs=9.3
Q ss_pred CCcccccccccc
Q psy13614 4 SNRSGDLADAQR 15 (118)
Q Consensus 4 ~~~a~E~k~p~k 15 (118)
-|++.|.+.|+|
T Consensus 16 GH~ar~C~~prk 27 (29)
T 1nc8_A 16 GHSARQCRAPRR 27 (29)
T ss_dssp SSCGGGCCSSSS
T ss_pred ccCHhHCccccc
Confidence 378888888865
No 9
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=15.29 E-value=1.3e+02 Score=14.96 Aligned_cols=26 Identities=15% Similarity=0.291 Sum_probs=12.6
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHHHH
Q psy13614 15 RSIPTGTICAILTTSFVYLSCVLLFA 40 (118)
Q Consensus 15 k~iP~aii~s~~~~~~ly~~~~~~~~ 40 (118)
++-|-..+.+.+++.++.++..+++.
T Consensus 7 ~~~~~~~Ia~~vVGvll~vi~~l~~~ 32 (44)
T 2jwa_A 7 RASPLTSIISAVVGILLVVVLGVVFG 32 (44)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccchHHHHHHHHHHHHHHHHHH
Confidence 44555555555555444444444333
No 10
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=13.35 E-value=65 Score=13.74 Aligned_cols=12 Identities=8% Similarity=0.100 Sum_probs=7.3
Q ss_pred CCcccccccccc
Q psy13614 4 SNRSGDLADAQR 15 (118)
Q Consensus 4 ~~~a~E~k~p~k 15 (118)
-|++.|..+|++
T Consensus 12 GH~ardC~~~~~ 23 (26)
T 1dsq_A 12 GHIKRDCKEEXX 23 (26)
T ss_dssp SSCTTTTTCC--
T ss_pred CcccccCCCccc
Confidence 377788877754
Done!