Query psy13614
Match_columns 118
No_of_seqs 127 out of 1039
Neff 8.7
Searched_HMMs 13730
Date Fri Aug 16 15:42:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13614.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/13614hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v54l_ f.23.6.1 (L:) Mitochon 14.9 56 0.0041 15.3 2.0 31 13-43 6-38 (46)
2 d1nc8a_ g.40.1.1 (A:) HIV nucl 13.4 35 0.0026 14.3 0.9 13 4-16 16-28 (29)
3 d1v54i_ f.23.3.1 (I:) Mitochon 13.4 52 0.0038 17.0 1.8 12 15-26 19-30 (73)
4 d1sfua_ a.4.5.19 (A:) 34L {Yab 12.2 41 0.003 17.3 1.2 14 92-105 41-54 (70)
5 d1xmka1 a.4.5.19 (A:294-366) Z 11.9 42 0.0031 17.4 1.2 15 92-106 37-51 (73)
6 d1rqga3 g.41.1.1 (A:139-173) M 11.4 51 0.0037 14.5 1.2 10 5-14 25-34 (35)
7 d2gxba1 a.4.5.19 (A:140-198) Z 10.4 53 0.0038 16.3 1.2 13 93-105 34-46 (59)
8 d2ahme1 d.302.1.1 (E:43-197) N 9.1 1.7E+02 0.012 17.2 3.3 16 93-108 66-81 (155)
9 d1rh5a_ f.41.1.1 (A:) Preprote 9.0 1.3E+02 0.0096 20.5 3.3 23 8-30 11-35 (422)
10 d2h8pc1 f.14.1.1 (C:22-78) Pot 8.3 91 0.0067 15.1 1.6 16 14-29 38-53 (57)
No 1
>d1v54l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]}
Probab=14.93 E-value=56 Score=15.25 Aligned_cols=31 Identities=10% Similarity=0.139 Sum_probs=18.9
Q ss_pred cccChhHHH--HHHHHHHHHHHHHHHHHHHHhc
Q psy13614 13 AQRSIPTGT--ICAILTTSFVYLSCVLLFAGTV 43 (118)
Q Consensus 13 p~k~iP~ai--i~s~~~~~~ly~~~~~~~~~~~ 43 (118)
|.+|+|-.+ -+.+....++|+...++.-+.+
T Consensus 6 PG~NLPFsv~Nk~rLla~m~~~fGsgfa~PF~i 38 (46)
T d1v54l_ 6 PGKNIPFSVENKWRLLAMMTLFFGSGFAAPFFI 38 (46)
T ss_dssp TTTSSSSCCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCccchhHHHHHHHHHHHHhccccchHHH
Confidence 777777543 3455556666766666655554
No 2
>d1nc8a_ g.40.1.1 (A:) HIV nucleocapsid {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=13.40 E-value=35 Score=14.30 Aligned_cols=13 Identities=8% Similarity=0.174 Sum_probs=9.8
Q ss_pred CCccccccccccC
Q psy13614 4 SNRSGDLADAQRS 16 (118)
Q Consensus 4 ~~~a~E~k~p~k~ 16 (118)
-|++..++-|+|.
T Consensus 16 GH~ar~CrAPRkk 28 (29)
T d1nc8a_ 16 GHSARQCRAPRRQ 28 (29)
T ss_dssp SSCGGGCCSSSSC
T ss_pred chhhhhccCcccC
Confidence 3778888888774
No 3
>d1v54i_ f.23.3.1 (I:) Mitochondrial cytochrome c oxidase subunit VIc {Cow (Bos taurus) [TaxId: 9913]}
Probab=13.37 E-value=52 Score=17.03 Aligned_cols=12 Identities=8% Similarity=-0.053 Sum_probs=5.0
Q ss_pred cChhHHHHHHHH
Q psy13614 15 RSIPTGTICAIL 26 (118)
Q Consensus 15 k~iP~aii~s~~ 26 (118)
+++|-+.+.++.
T Consensus 19 ~hl~~a~~lsl~ 30 (73)
T d1v54i_ 19 FHIVGAFMVSLG 30 (73)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444433
No 4
>d1sfua_ a.4.5.19 (A:) 34L {Yaba-like disease virus, YLDV [TaxId: 132475]}
Probab=12.15 E-value=41 Score=17.33 Aligned_cols=14 Identities=21% Similarity=0.192 Sum_probs=11.5
Q ss_pred HHHHHHHhhcCCCc
Q psy13614 92 APRLLQQGPKSDII 105 (118)
Q Consensus 92 ~sR~~~a~ardg~l 105 (118)
.-|.+|.|.|+|.+
T Consensus 41 VNr~LY~L~~~G~v 54 (70)
T d1sfua_ 41 INQQLYKLQKEDTV 54 (70)
T ss_dssp HHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHCCCe
Confidence 45889999998876
No 5
>d1xmka1 a.4.5.19 (A:294-366) Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.86 E-value=42 Score=17.41 Aligned_cols=15 Identities=7% Similarity=-0.020 Sum_probs=12.1
Q ss_pred HHHHHHHhhcCCCcc
Q psy13614 92 APRLLQQGPKSDIIR 106 (118)
Q Consensus 92 ~sR~~~a~ardg~lP 106 (118)
.-|.+|+|.|+|.+-
T Consensus 37 VN~~LY~L~k~g~v~ 51 (73)
T d1xmka1 37 INAVLIDMERQGDVY 51 (73)
T ss_dssp HHHHHHHHHHTTSEE
T ss_pred HhHHHHHHHHCCCee
Confidence 568999999988763
No 6
>d1rqga3 g.41.1.1 (A:139-173) Methionyl-tRNA synthetase (MetRS), Zn-domain {Pyrococcus abyssi [TaxId: 29292]}
Probab=11.42 E-value=51 Score=14.50 Aligned_cols=10 Identities=10% Similarity=-0.004 Sum_probs=7.2
Q ss_pred Cccccccccc
Q psy13614 5 NRSGDLADAQ 14 (118)
Q Consensus 5 ~~a~E~k~p~ 14 (118)
+-+.|++||+
T Consensus 25 ~~p~eLinP~ 34 (35)
T d1rqga3 25 LTPEILINPR 34 (35)
T ss_dssp CCTTSSBSCB
T ss_pred cCHHHhcCCC
Confidence 4467888885
No 7
>d2gxba1 a.4.5.19 (A:140-198) Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.41 E-value=53 Score=16.29 Aligned_cols=13 Identities=23% Similarity=0.209 Sum_probs=9.6
Q ss_pred HHHHHHhhcCCCc
Q psy13614 93 PRLLQQGPKSDII 105 (118)
Q Consensus 93 sR~~~a~ardg~l 105 (118)
-|++|++.+.|.+
T Consensus 34 Nr~LYsL~~kgkl 46 (59)
T d2gxba1 34 NRVLYSLAKKGKL 46 (59)
T ss_dssp HHHHHHHHHTTSE
T ss_pred HHHHHHHHHccch
Confidence 4778888887755
No 8
>d2ahme1 d.302.1.1 (E:43-197) Nonstructural protein 8, NSP8 {SARS coronavirus [TaxId: 227859]}
Probab=9.06 E-value=1.7e+02 Score=17.17 Aligned_cols=16 Identities=0% Similarity=0.030 Sum_probs=12.6
Q ss_pred HHHHHHhhcCCCccCC
Q psy13614 93 PRLLQQGPKSDIIRTE 108 (118)
Q Consensus 93 sR~~~a~ardg~lP~~ 108 (118)
-..++..||||.+|.+
T Consensus 66 vn~i~~~Ar~GvVPL~ 81 (155)
T d2ahme1 66 LNNIINNARDGCVPLN 81 (155)
T ss_dssp HHHHHHHHHTTCEESS
T ss_pred HHHHHHHHhcCeeeee
Confidence 3457888999999964
No 9
>d1rh5a_ f.41.1.1 (A:) Preprotein translocase SecY subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=9.02 E-value=1.3e+02 Score=20.47 Aligned_cols=23 Identities=4% Similarity=-0.031 Sum_probs=15.1
Q ss_pred ccccccccChh--HHHHHHHHHHHH
Q psy13614 8 GDLADAQRSIP--TGTICAILTTSF 30 (118)
Q Consensus 8 ~E~k~p~k~iP--~aii~s~~~~~~ 30 (118)
-|+++|.|+++ +=++.+..+..+
T Consensus 11 p~v~~p~~~~~lr~kil~T~~~l~i 35 (422)
T d1rh5a_ 11 PEVELPVKEITFKEKLKWTGIVLVL 35 (422)
T ss_dssp CCCCCCSSCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 58999988887 555555444433
No 10
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=8.31 E-value=91 Score=15.06 Aligned_cols=16 Identities=19% Similarity=0.079 Sum_probs=12.5
Q ss_pred ccChhHHHHHHHHHHH
Q psy13614 14 QRSIPTGTICAILTTS 29 (118)
Q Consensus 14 ~k~iP~aii~s~~~~~ 29 (118)
=+++|.++.++++..+
T Consensus 38 f~sip~a~WWaivT~T 53 (57)
T d2h8pc1 38 LITYPRALWWACETAT 53 (57)
T ss_dssp CCSHHHHHHHHHHHHT
T ss_pred ccccchhhhhheeeee
Confidence 3589999999887653
Done!