RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13614
(118 letters)
>gnl|CDD|233194 TIGR00930, 2a30, K-Cl cotransporter. [Transport and binding
proteins, Other].
Length = 953
Score = 122 bits (307), Expect = 2e-33
Identities = 44/126 (34%), Positives = 59/126 (46%), Gaps = 21/126 (16%)
Query: 1 MAGSNRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDKFG------- 53
+AG+N SGDL D Q++IP GT+ AILTT+ VYL V+LF V DK
Sbjct: 297 LAGANISGDLKDPQKAIPKGTLLAILTTTVVYLGSVVLFGACVVRDATGDKNDTLVTNCT 356
Query: 54 --------------QSIGGRLVVANIAWPNEWVILIGSFLSTIGAGLQSLTGAPRLLQQG 99
+ L V ++ P +I G F +T+ + L SL APRL Q
Sbjct: 357 SAACFSECAHNTCSYGLMNNLQVMSLVSPFPPLITAGIFSATLSSALASLVSAPRLFQAL 416
Query: 100 PKSDII 105
K +I
Sbjct: 417 CKDNIY 422
>gnl|CDD|215858 pfam00324, AA_permease, Amino acid permease.
Length = 473
Score = 45.8 bits (109), Expect = 7e-07
Identities = 17/103 (16%), Positives = 34/103 (33%), Gaps = 8/103 (7%)
Query: 1 MAGSNRSGDLADAQRSIPTGTICAILTTSFVY-LSCVLLFAGTVDNLLLRDKFGQSIGGR 59
N +G++ + +++IP + A+ + Y LS + + N S
Sbjct: 212 ELVGNAAGEVKNPRKAIPKAILQAVWRITIFYILSLLAIGLLVPWNDPGLLADSASAASP 271
Query: 60 LVVA-----NIAWPNEWVILIGSFLSTIGAGLQSLTGAPRLLQ 97
V+ +I + + A SL R+L
Sbjct: 272 FVIFFKSLGISGLAP--LINAVILTAALSAANSSLYSGSRVLY 312
>gnl|CDD|223605 COG0531, PotE, Amino acid transporters [Amino acid transport and
metabolism].
Length = 466
Score = 35.5 bits (82), Expect = 0.003
Identities = 17/90 (18%), Positives = 36/90 (40%)
Query: 7 SGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDKFGQSIGGRLVVANIA 66
+ ++ + +R+IP I ++L +Y+ L+ G + L + +
Sbjct: 224 AEEVKNPKRTIPRAIILSLLIVLILYILGALVIVGVLPAGDLAASAPSAPLALAALFGGG 283
Query: 67 WPNEWVILIGSFLSTIGAGLQSLTGAPRLL 96
+I I + LS G+ L + R+L
Sbjct: 284 NWGAIIIAILALLSLFGSLLAWILAVSRVL 313
>gnl|CDD|203934 pfam08414, NADPH_Ox, Respiratory burst NADPH oxidase. This
domain is found in plant proteins such as respiratory
burst NADPH oxidase proteins which produce reactive
oxygen species as a defence mechanism. It tends to
occur to the N-terminus of an EF-hand (pfam00036),
which suggests a direct regulatory effect of Ca2+ on
the activity of the NADPH oxidase in plants.
Length = 96
Score = 29.2 bits (66), Expect = 0.20
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 42 TVDNLLLRDKFGQSIG 57
VD L R KFG+ IG
Sbjct: 36 AVDGYLPRSKFGECIG 51
>gnl|CDD|233156 TIGR00861, MIP, MIP family channel proteins. 1.A.8 The Major
Intrinsic Protein (MIP) FamilyThe MIP family is large
and diverse, possessing over 100 members that all form
transmembrane channels. These channel proteins function
in water, smallcarbohydrate (e.g., glycerol), urea, NH3,
CO2 and possibly ion transport by an energy independent
mechanism. They are found ubiquitously in bacteria,
archaeaand eukaryotes. The MIP family contains two major
groups of channels: aquaporins and glycerol
facilitators.The known aquaporins cluster loosely
together as do the known glycerol facilitators. MIP
family proteins are believed to form aqueous pores that
selectively allow passive transport of their solute(s)
across the membrane with minimal apparent recognition.
Aquaporins selectively transport water (but not
glycerol) while glycerol facilitators selectively
transport glycerol but not water. Some aquaporins can
transport NH3 and CO2. Glycerol facilitators function as
solute nonspecific channels, and may transport glycerol,
dihydroxyacetone, propanediol, urea and other small
neutral molecules in physiologically importantprocesses.
Some members of the family, including the yeast FPS
protein (TC #1.A.8.5.1) and tobacco NtTIPA may transport
both water and small solutes [Transport and binding
proteins, Unknown substrate].
Length = 216
Score = 27.3 bits (61), Expect = 1.6
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 55 SIGGRLVVANIAWPNEWVILIGSFLSTIGAGL 86
S+G L W N WV +G + I L
Sbjct: 183 SLGPALFAGLAGWGNHWVYWVGPIIGAILGAL 214
>gnl|CDD|222193 pfam13520, AA_permease_2, Amino acid permease.
Length = 425
Score = 27.3 bits (61), Expect = 1.9
Identities = 17/88 (19%), Positives = 35/88 (39%), Gaps = 3/88 (3%)
Query: 13 AQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDKFGQSIGGRLVVANIAWPN--E 70
+R +P +L +YL +LF G V + + K ++
Sbjct: 215 KKRDVPKALFIGLLIVGVLYLLVNILFLGVVPDDEI-AKLSNLPSVAALLFEAVGGPWGA 273
Query: 71 WVILIGSFLSTIGAGLQSLTGAPRLLQQ 98
+++I LS +GA ++ + R+L+
Sbjct: 274 IIVVILLALSLLGAVNTAIVASSRVLEA 301
>gnl|CDD|218796 pfam05889, SLA_LP_auto_ag, Soluble liver antigen/liver pancreas
antigen (SLA/LP autoantigen). This family consists of
several eukaryotic and archaeal proteins which are
related to the human soluble liver antigen/liver
pancreas antigen (SLA/LP autoantigen). Autoantibodies
are a hallmark of autoimmune hepatitis, but most are not
disease specific. Autoantibodies to soluble liver
antigen (SLA) and to liver and pancreas antigen (LP)
have been described as disease specific, occurring in
about 30% of all patients with autoimmune hepatitis. The
function of SLA/LP is unknown, however, it has been
suggested that the protein may function as a serine
hydroxymethyltransferase and may be an important enzyme
in the thus far poorly understood selenocysteine
pathway. The archaeal sequences Methanopyrus kandleri
spcS and MK0229 are annotated as being pyridoxal
phosphate-dependent enzymes.
Length = 386
Score = 26.4 bits (58), Expect = 4.7
Identities = 30/114 (26%), Positives = 46/114 (40%), Gaps = 11/114 (9%)
Query: 3 GSNRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDN-LLLRDKFGQSIGGRLV 61
G RSG+L+D Q ++ A LT S V LL V N ++ G S+ L
Sbjct: 34 GIGRSGNLSDPQPKALGSSVLAKLTNSLVLDFLKLLGLREVKNCFVVPMATGMSLALCLS 93
Query: 62 VANIAWPNEWVILI-----GSFLSTIGAGLQSLTGAPRLLQQGPKSDIIRTEDN 110
++VI S + AG + PRL++ + D + T+ N
Sbjct: 94 ALRKRPKAKYVIWPRIDQKSSIKAAERAGFE-----PRLVETVLEGDYLITDVN 142
>gnl|CDD|213807 TIGR03378, glycerol3P_GlpB, glycerol-3-phosphate dehydrogenase,
anaerobic, B subunit. Members of this protein family
are the B subunit, product of the glpB gene, of a
three-subunit, membrane-anchored, FAD-dependent
anaerobic glycerol-3-phosphate dehydrogenase [Energy
metabolism, Anaerobic].
Length = 419
Score = 26.1 bits (58), Expect = 5.8
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 82 IGAGLQSLTGAPRLLQQGPKSDII 105
IG GL L+ A RL + G K II
Sbjct: 6 IGGGLAGLSCALRLAEAGKKCAII 29
>gnl|CDD|215268 PLN02487, PLN02487, zeta-carotene desaturase.
Length = 569
Score = 25.9 bits (57), Expect = 6.5
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 82 IGAGLQSLTGAPRLLQQGPKSDI 104
IGAGL ++ A LL QG + DI
Sbjct: 81 IGAGLAGMSTAVELLDQGHEVDI 103
>gnl|CDD|237009 PRK11883, PRK11883, protoporphyrinogen oxidase; Reviewed.
Length = 451
Score = 25.6 bits (57), Expect = 7.2
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 82 IGAGLQSLTGAPRLLQQGPKSDII 105
IG G+ L+ A RL ++GP +DI
Sbjct: 6 IGGGITGLSAAYRLHKKGPDADIT 29
>gnl|CDD|129987 TIGR00909, 2A0306, amino acid transporter. [Transport and binding
proteins, Amino acids, peptides and amines].
Length = 429
Score = 25.5 bits (56), Expect = 9.3
Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 22/95 (23%)
Query: 12 DAQRSIPTGTICAILTTSFVYL--SCVLL-------FAGTVDNL-LLRDKFGQSIGGRLV 61
+ +R IP I +++ + +Y+ + V+L AG+ L L+ GQ IGG
Sbjct: 223 NPERDIPKAIILSLIVVTLLYVLVAAVILGAVPWRQLAGSTAPLSLVGYDLGQGIGG--- 279
Query: 62 VANIAWPNEWVILIGSFLSTIGAGLQSLTGAPRLL 96
++ G+ S L + G R+L
Sbjct: 280 ---------LILTAGAVFSIASVMLAGIYGTSRVL 305
>gnl|CDD|223977 COG1048, AcnA, Aconitase A [Energy production and conversion].
Length = 861
Score = 25.4 bits (56), Expect = 9.3
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 39 FAGTVDNLLLRDKFGQSIGGRLVVANIAWPNE 70
AGT++ L D G G+ V WP+
Sbjct: 540 LAGTINFDLTTDPLGTDNDGKPVYLKDIWPST 571
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.138 0.409
Gapped
Lambda K H
0.267 0.0729 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,958,585
Number of extensions: 520076
Number of successful extensions: 509
Number of sequences better than 10.0: 1
Number of HSP's gapped: 505
Number of HSP's successfully gapped: 43
Length of query: 118
Length of database: 10,937,602
Length adjustment: 81
Effective length of query: 37
Effective length of database: 7,344,928
Effective search space: 271762336
Effective search space used: 271762336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.2 bits)