RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy13614
         (118 letters)



>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell
           membrane, membrane, transmembrane, transport protein;
           HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB:
           3gi9_C* 3gi8_C
          Length = 444

 Score = 29.2 bits (66), Expect = 0.24
 Identities = 16/93 (17%), Positives = 34/93 (36%), Gaps = 1/93 (1%)

Query: 4   SNRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDKFGQSIGGRLVVA 63
           +N S  + + ++++P     +IL   FVY+   +   G +    L      ++       
Sbjct: 208 TNASEHIENPKKNVPRAIFISILIVMFVYVGVAISAIGNLPIDELIKASENALAVAAKPF 267

Query: 64  NIAWPNEWVILIGSFLSTIGAGLQSLTGAPRLL 96
                   +I IG+  S   A   ++ G   + 
Sbjct: 268 LGNLGF-LLISIGALFSISSAMNATIYGGANVA 299


>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound,
           amino-acid transport, cell inner membrane, cell
           membrane, membrane; HET: ARG BNG; 3.00A {Escherichia
           coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A
           3ncy_A
          Length = 445

 Score = 28.1 bits (63), Expect = 0.64
 Identities = 15/93 (16%), Positives = 32/93 (34%), Gaps = 2/93 (2%)

Query: 4   SNRSGDLADAQRSIPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDKFGQSIGGRLVVA 63
           S  +G + + +R++P  TI  +L  +  Y+       G + N  L        G    +A
Sbjct: 211 SVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAAL-RVSASPFGDAARMA 269

Query: 64  NIAWPNEWVILIGSFLSTIGAGLQSLTGAPRLL 96
                   ++   +    +G+       A +  
Sbjct: 270 LGDTA-GAIVSFCAAAGCLGSLGGWTLLAGQTA 301


>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine
           dinucleotide, isomerase; HET: FAD UDP; 2.25A
           {Trypanosoma cruzi} PDB: 4dsh_A*
          Length = 484

 Score = 27.1 bits (59), Expect = 1.6
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 82  IGAGLQSLTGAPRLLQQGPKSDII 105
           IGAG   L  A RL + G K+  +
Sbjct: 15  IGAGPTGLGAAVRLTELGYKNWHL 38


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 26.6 bits (58), Expect = 2.2
 Identities = 13/102 (12%), Positives = 34/102 (33%), Gaps = 23/102 (22%)

Query: 11  ADAQRS--IPTGTICAILTTSFVYLSCVLLFAGTVDNLLLRDKFGQSIGGRLVVANIAWP 68
           A + R   +  G++        + +     F  +     L+++F + +         A  
Sbjct: 3   AYSTRPLTLSHGSL----EHVLL-VPTASFFIASQ----LQEQFNKILPE--PTEGFAAD 51

Query: 69  NE---WVILIGSFLSTIGAGLQSLTGAPRLLQQGPKSDIIRT 107
           +E      L+G FL  + + ++         + G    ++  
Sbjct: 52  DEPTTPAELVGKFLGYVSSLVEP-------SKVGQFDQVLNL 86


>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4,
           X-RAY, structure, PSI, protein structure initiative;
           HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
          Length = 336

 Score = 25.8 bits (55), Expect = 4.1
 Identities = 7/24 (29%), Positives = 11/24 (45%)

Query: 82  IGAGLQSLTGAPRLLQQGPKSDII 105
           IG G+  L+ A  L   G +  + 
Sbjct: 8   IGTGIAGLSAAQALTAAGHQVHLF 31


>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate
           porphyria disease, VP oxidoreductase-oxidoreductase
           inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}
          Length = 477

 Score = 25.4 bits (55), Expect = 6.2
 Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 1/32 (3%)

Query: 82  IGAGLQSLTGAPRLLQQGPKSDIIRTE-DNRL 112
           +G G+  L  +  L +      ++  E   RL
Sbjct: 8   LGGGISGLAASYHLSRAPCPPKVVLVESSERL 39


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.320    0.138    0.409 

Gapped
Lambda     K      H
   0.267   0.0470    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,721,436
Number of extensions: 91595
Number of successful extensions: 174
Number of sequences better than 10.0: 1
Number of HSP's gapped: 173
Number of HSP's successfully gapped: 12
Length of query: 118
Length of database: 6,701,793
Length adjustment: 81
Effective length of query: 37
Effective length of database: 4,440,192
Effective search space: 164287104
Effective search space used: 164287104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.1 bits)