BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13615
(263 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QK4|A Chain A, Human Glycinamide Ribonucleotide Synthetase
pdb|2QK4|B Chain B, Human Glycinamide Ribonucleotide Synthetase
Length = 452
Score = 92.0 bits (227), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 48/72 (66%)
Query: 159 VLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVI 218
LCFTDGKTV MPP+QDHKR D GPNTGGMGAYCP ++ +I DT+L R +
Sbjct: 222 CLCFTDGKTVAPMPPAQDHKRLLEGDGGPNTGGMGAYCPAPQVSNDLLLKIKDTVLQRTV 281
Query: 219 KKMIAEGTPFVG 230
M EGTP+ G
Sbjct: 282 DGMQQEGTPYTG 293
>pdb|2V9Y|A Chain A, Human Aminoimidazole Ribonucleotide Synthetase
pdb|2V9Y|B Chain B, Human Aminoimidazole Ribonucleotide Synthetase
Length = 334
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 85/160 (53%), Gaps = 12/160 (7%)
Query: 19 GTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHT--LIL 76
G GT LK + N+ D + ++V + N +I P Y L L
Sbjct: 35 GVGTKLK--IAQLCNKHDTIGQDLVAMCVN-------DILAQGAEPLFFLDYFSCGKLDL 85
Query: 77 SNSLQVMQKVGAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKD 136
S + V+ + AK A + GGETAE+P +Y PG+YDLAGFAVGA+E+ LP ++
Sbjct: 86 SVTEAVVAGI-AKACGKAGCALLGGETAEMPDMYPPGEYDLAGFAVGAMERDQKLPHLER 144
Query: 137 VAAGDVVIALPSSGIHSNGFSLVLCFTDGKTVKVMPPSQD 176
+ GDVV+ + SSG+HSNGFSLV +++ P+ D
Sbjct: 145 ITEGDVVVGIASSGLHSNGFSLVRKIVAKSSLQYSSPAPD 184
>pdb|2Z01|A Chain A, Crystal Structure Of Phosphoribosylaminoimidazole
Synthetase From Geobacillus Kaustophilus
Length = 348
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/158 (37%), Positives = 83/158 (52%), Gaps = 26/158 (16%)
Query: 12 RVAVLISGT---GTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLN-------IARNA 61
R VLISGT GT LK L +R D + + V + N V+G IA
Sbjct: 55 RQPVLISGTDGVGTKLK--LAFLLDRHDTIGIDCVAMCVNDIIVQGAEPLFFLDYIACGK 112
Query: 62 GIPTKVSTYKHTLILSNSLQVMQKVGAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFA 121
+P K++ +++ V + A + GGETAE+PG+Y +YDLAGFA
Sbjct: 113 AVPEKIAA------------IVKGVADGCVE-AGCALIGGETAEMPGMYDEDEYDLAGFA 159
Query: 122 VGAVEKASLLPKVKDVAAGDVVIALPSSGIHSNGFSLV 159
VG EK L+ + + AGD ++ LPSSG+HSNG+SLV
Sbjct: 160 VGVAEKERLITG-ETIQAGDALVGLPSSGLHSNGYSLV 196
>pdb|1CLI|A Chain A, X-Ray Crystal Structure Of Aminoimidazole Ribonucleotide
Synthetase (Purm), From The E. Coli Purine Biosynthetic
Pathway, At 2.5 A Resolution
pdb|1CLI|B Chain B, X-Ray Crystal Structure Of Aminoimidazole Ribonucleotide
Synthetase (Purm), From The E. Coli Purine Biosynthetic
Pathway, At 2.5 A Resolution
pdb|1CLI|C Chain C, X-Ray Crystal Structure Of Aminoimidazole Ribonucleotide
Synthetase (Purm), From The E. Coli Purine Biosynthetic
Pathway, At 2.5 A Resolution
pdb|1CLI|D Chain D, X-Ray Crystal Structure Of Aminoimidazole Ribonucleotide
Synthetase (Purm), From The E. Coli Purine Biosynthetic
Pathway, At 2.5 A Resolution
Length = 345
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/154 (39%), Positives = 83/154 (53%), Gaps = 12/154 (7%)
Query: 9 QRKRVAVLISGT-GTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKV 67
Q+ R VL+SGT G K L R D + ++V + N V+G P
Sbjct: 53 QKYREPVLVSGTDGVGTKLRLAMDLKRHDTIGIDLVAMCVNDLVVQGAE-------PLFF 105
Query: 68 STYKHT--LILSNSLQVMQKVGAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAV 125
Y T L + + V+ + A+ + S GGETAE+PG+Y DYD+AGF VG V
Sbjct: 106 LDYYATGKLDVDTASAVISGI-AEGCLQSGCSLVGGETAEMPGMYHGEDYDVAGFCVGVV 164
Query: 126 EKASLLPKVKDVAAGDVVIALPSSGIHSNGFSLV 159
EK+ ++ K V+ GDV+IAL SSG HSNG+SLV
Sbjct: 165 EKSEIIDGSK-VSDGDVLIALGSSGPHSNGYSLV 197
>pdb|2BTU|A Chain A, Crystal Structure Of Phosphoribosylformylglycinamidine
Cyclo-Ligase From Bacillus Anthracis At 2.3a Resolution.
pdb|2BTU|B Chain B, Crystal Structure Of Phosphoribosylformylglycinamidine
Cyclo-Ligase From Bacillus Anthracis At 2.3a Resolution
Length = 346
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 82/153 (53%), Gaps = 22/153 (14%)
Query: 15 VLISGT-GTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLN-------IARNAGIPTK 66
VL+SGT G K +L +++ D + + V + N V+G IA P+K
Sbjct: 56 VLVSGTDGVGTKLMLAFMADKHDTIGIDAVAMCVNDIVVQGAEPLFFLDYIACGKAEPSK 115
Query: 67 VSTYKHTLILSNSLQVMQKVGAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAVE 126
+ N ++ + + G + + A GGETAE+PG+Y +YDLAGF VG V+
Sbjct: 116 IE---------NIVKGISE-GCRQAGCALI---GGETAEMPGMYSTEEYDLAGFTVGIVD 162
Query: 127 KASLLPKVKDVAAGDVVIALPSSGIHSNGFSLV 159
K ++ K + AG V+I L SSGIHSNG+SLV
Sbjct: 163 KKKIVTGEK-IEAGHVLIGLASSGIHSNGYSLV 194
>pdb|3P4E|A Chain A, Phosphoribosylformylglycinamidine Cyclo-Ligase From Vibrio
Cholerae
Length = 349
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 78/148 (52%), Gaps = 12/148 (8%)
Query: 15 VLISGT-GTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHT 73
VL+SGT G K L + D + ++V + N V+G P Y T
Sbjct: 63 VLVSGTDGVGTKLRLALDMKKHDTIGIDLVAMCVNDLIVQGAE-------PLFFLDYYAT 115
Query: 74 --LILSNSLQVMQKVGAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAVEKASLL 131
L + + +V+ + A A + GGETAE+PG+Y+ DYD+AGF VG VEK ++
Sbjct: 116 GKLDVDTAAEVISGI-ADGCLQAGCALIGGETAEMPGMYEGEDYDVAGFCVGVVEKEEII 174
Query: 132 PKVKDVAAGDVVIALPSSGIHSNGFSLV 159
K V GD +IA+ SSG HSNG+SLV
Sbjct: 175 DGSK-VQVGDALIAVGSSGPHSNGYSLV 201
>pdb|2XD4|A Chain A, Nucleotide-Bound Structures Of Bacillus Subtilis
Glycinamide Ribonucleotide Synthetase
Length = 422
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 156 FSLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILM 215
FSL + F G+ V M +QDHKR ++ DKGPNTGGMGAY P ++E + +TI+
Sbjct: 193 FSL-MAFVKGEKVYPMVIAQDHKRAFDGDKGPNTGGMGAYSPVPQISEETVRHAVETIVK 251
Query: 216 RVIKKMIAEGTPFVG 230
K M+ EG F G
Sbjct: 252 PAAKAMVQEGRSFTG 266
>pdb|2YRW|A Chain A, Crystal Structure Of Gar Synthetase From Geobacillus
Kaustophilus
pdb|2YRX|A Chain A, Crystal Structure Of Gar Synthetase From Geobacillus
Kaustophilus
pdb|2YS6|A Chain A, Crystal Structure Of Gar Synthetase From Geobacillus
Kaustophilus
pdb|2YS7|A Chain A, Crystal Structure Of Gar Synthetase From Geobacillus
Kaustophilus
Length = 451
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 156 FSLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILM 215
FS + F +G+ V + +QDHKR Y+ D+GPNTGGMGAY P +++ + IL
Sbjct: 214 FSF-MAFVNGEKVYPLAIAQDHKRAYDGDEGPNTGGMGAYSPVPQISDEMMDAALEAILR 272
Query: 216 RVIKKMIAEGTPFVG 230
K + AEG PF+G
Sbjct: 273 PAAKALAAEGRPFLG 287
>pdb|2YW2|A Chain A, Crystal Structure Of Gar Synthetase From Aquifex Aeolicus
In Complex With Atp
pdb|2YW2|B Chain B, Crystal Structure Of Gar Synthetase From Aquifex Aeolicus
In Complex With Atp
pdb|2YYA|A Chain A, Crystal Structure Of Gar Synthetase From Aquifex Aeolicus
pdb|2YYA|B Chain B, Crystal Structure Of Gar Synthetase From Aquifex Aeolicus
Length = 424
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 40/60 (66%)
Query: 171 MPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVG 230
+P SQDHKR + DKGPNTGGMGAY P ++ E +K I + I+ RVIK + EG + G
Sbjct: 207 LPTSQDHKRLLDEDKGPNTGGMGAYSPTPVINEEVEKRIREEIVERVIKGLKEEGIYYRG 266
>pdb|1GSO|A Chain A, Glycinamide Ribonucleotide Synthetase (Gar-Syn) From E.
Coli
Length = 431
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 41/71 (57%)
Query: 160 LCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIK 219
+ DG+ V M SQDHKR + D GPNTGGMGAY P ++T+ + + I+ +K
Sbjct: 200 IVMVDGEHVLPMATSQDHKRVGDKDTGPNTGGMGAYSPAPVVTDDVHQRTMERIIWPTVK 259
Query: 220 KMIAEGTPFVG 230
M AEG + G
Sbjct: 260 GMAAEGNTYTG 270
>pdb|2IP4|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide Synthetase
From Thermus Thermophilus Hb8
pdb|2IP4|B Chain B, Crystal Structure Of Glycinamide Ribonucleotide Synthetase
From Thermus Thermophilus Hb8
Length = 417
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 159 VLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVI 218
VL TDG+T+ + PSQDHKR + D+GP TGG GA P EA + + + IL ++
Sbjct: 190 VLALTDGETILPLLPSQDHKRLLDGDQGPXTGGXGAVAPYPX-DEATLRRVEEEILGPLV 248
Query: 219 KKMIAEGTPFVG 230
+ + AEG + G
Sbjct: 249 RGLRAEGVVYRG 260
>pdb|2XCL|A Chain A, Nucleotide-Bound Structures Of Bacillus Subtilis
Glycinamide Ribonucleotide Synthetase
Length = 422
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 156 FSLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILM 215
FSL F G+ V +QDHKR ++ DKGPNTGG GAY P ++E + +TI+
Sbjct: 193 FSLX-AFVKGEKVYPXVIAQDHKRAFDGDKGPNTGGXGAYSPVPQISEETVRHAVETIVK 251
Query: 216 RVIKKMIAEGTPFVG 230
K + EG F G
Sbjct: 252 PAAKAXVQEGRSFTG 266
>pdb|3MJF|A Chain A, Phosphoribosylamine-Glycine Ligase From Yersinia Pestis
Length = 431
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 39/71 (54%)
Query: 160 LCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIK 219
+ DG+ V SQDHKR + D GPNTGG GAY P ++T+ + + D ++ ++
Sbjct: 201 IVXVDGENVLPXATSQDHKRVGDGDTGPNTGGXGAYSPAPVVTDDVHQRVXDQVIWPTVR 260
Query: 220 KMIAEGTPFVG 230
AEG + G
Sbjct: 261 GXAAEGNIYTG 271
>pdb|3M84|A Chain A, Crystal Structure Of Phosphoribosylaminoimidazole
Synthetase From Francisella Tularensis
pdb|3M84|B Chain B, Crystal Structure Of Phosphoribosylaminoimidazole
Synthetase From Francisella Tularensis
pdb|3QTY|A Chain A, Crystal Structure Of Phosphoribosylaminoimidazole
Synthetase From Francisella Tularensis Complexed With
Pyrophosphate
pdb|3QTY|B Chain B, Crystal Structure Of Phosphoribosylaminoimidazole
Synthetase From Francisella Tularensis Complexed With
Pyrophosphate
Length = 350
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Query: 100 GGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKDVAAGDVVIALPSSGIHSNGFSL 158
GGETAE PG+YQ G+ D G G V++ ++ +++ GD+V L SSG+H+NG+S
Sbjct: 142 GGETAEXPGVYQAGEIDXVGVITGIVDRKRIING-ENIKEGDIVFGLSSSGLHTNGYSF 199
>pdb|1ZLX|A Chain A, The Apo Structure Of Human Glycinamide Ribonucleotide
Transformylase
Length = 203
Score = 57.0 bits (136), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 44/60 (73%), Gaps = 2/60 (3%)
Query: 12 RVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYK 71
RVAVLISGTG+NL++L+++T R A+I +V+SNK V GL+ A AGIPT+V +K
Sbjct: 2 RVAVLISGTGSNLQALIDST--REPNSSAQIDIVISNKAAVAGLDKAERAGIPTRVINHK 59
>pdb|1ZLY|A Chain A, The Structure Of Human Glycinamide Ribonucleotide
Transformylase In Complex With Alpha,beta-n-
(hydroxyacetyl)-d-ribofuranosylamine And 10-formyl-5,8,
Dideazafolate
Length = 203
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 44/60 (73%), Gaps = 2/60 (3%)
Query: 12 RVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYK 71
RVAVLISGTG+NL++L+++T R A+I +V+SNK V GL+ A AGIPT+V +K
Sbjct: 2 RVAVLISGTGSNLQALIDST--REPNSSAQIDIVISNKAAVAGLDKAERAGIPTRVINHK 59
>pdb|1MEO|A Chain A, Human Glycinamide Ribonucleotide Transformylase At Ph
4.2
pdb|1NJS|A Chain A, Human Gar Tfase In Complex With Hydrolyzed Form Of 10-
Trifluoroacetyl-5,10-Dideaza-Acyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1NJS|B Chain B, Human Gar Tfase In Complex With Hydrolyzed Form Of 10-
Trifluoroacetyl-5,10-Dideaza-Acyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RBM|A Chain A, Human Gar Tfase Complex Structure With Polyglutamated
10- (Trifluoroacetyl)-5,10-Dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RBM|B Chain B, Human Gar Tfase Complex Structure With Polyglutamated
10- (Trifluoroacetyl)-5,10-Dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RBQ|A Chain A, Human Gar Tfase Complex Structure With
10-(Trifluoroacetyl)-
5,10-Dideazaacyclic-5,6,7,8-Tetrahydrofolic Acid
pdb|1RBQ|B Chain B, Human Gar Tfase Complex Structure With
10-(Trifluoroacetyl)-
5,10-Dideazaacyclic-5,6,7,8-Tetrahydrofolic Acid
pdb|1RBQ|C Chain C, Human Gar Tfase Complex Structure With
10-(Trifluoroacetyl)-
5,10-Dideazaacyclic-5,6,7,8-Tetrahydrofolic Acid
pdb|1RBQ|D Chain D, Human Gar Tfase Complex Structure With
10-(Trifluoroacetyl)-
5,10-Dideazaacyclic-5,6,7,8-Tetrahydrofolic Acid
pdb|1RBY|A Chain A, Human Gar Tfase Complex Structure With
10-(trifluoroacetyl)-
5,10-dideazaacyclic-5,6,7,8-tetrahydrofolic Acid And
Substrate Beta-gar
pdb|1RBY|B Chain B, Human Gar Tfase Complex Structure With
10-(trifluoroacetyl)-
5,10-dideazaacyclic-5,6,7,8-tetrahydrofolic Acid And
Substrate Beta-gar
pdb|1RBY|C Chain C, Human Gar Tfase Complex Structure With
10-(trifluoroacetyl)-
5,10-dideazaacyclic-5,6,7,8-tetrahydrofolic Acid And
Substrate Beta-gar
pdb|1RBY|D Chain D, Human Gar Tfase Complex Structure With
10-(trifluoroacetyl)-
5,10-dideazaacyclic-5,6,7,8-tetrahydrofolic Acid And
Substrate Beta-gar
pdb|1RBZ|A Chain A, Human Gar Tfase Complex Structure With Polyglutamated
10- (Trifluoroacetyl)-5,10-Dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RBZ|B Chain B, Human Gar Tfase Complex Structure With Polyglutamated
10- (Trifluoroacetyl)-5,10-Dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RC0|A Chain A, Human Gar Tfase Complex Structure With Polyglutamated
10- (trifluoroacetyl)-5,10-dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RC0|B Chain B, Human Gar Tfase Complex Structure With Polyglutamated
10- (trifluoroacetyl)-5,10-dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RC1|A Chain A, Human Gar Tfase Complex Structure With Polyglutamated
10- (Trifluoroacetyl)-5,10-Dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RC1|B Chain B, Human Gar Tfase Complex Structure With Polyglutamated
10- (Trifluoroacetyl)-5,10-Dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
Length = 209
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 44/60 (73%), Gaps = 2/60 (3%)
Query: 12 RVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYK 71
RVAVLISGTG+NL++L+++T R A+I +V+SNK V GL+ A AGIPT+V +K
Sbjct: 2 RVAVLISGTGSNLQALIDST--REPNSSAQIDIVISNKAAVAGLDKAERAGIPTRVINHK 59
>pdb|1MEJ|B Chain B, Human Glycinamide Ribonucleotide Transformylase Domain
At Ph 8.5
pdb|1MEJ|A Chain A, Human Glycinamide Ribonucleotide Transformylase Domain
At Ph 8.5
pdb|1MEJ|C Chain C, Human Glycinamide Ribonucleotide Transformylase Domain
At Ph 8.5
pdb|1MEN|A Chain A, Complex Structure Of Human Gar Tfase And Substrate
Beta-Gar
pdb|1MEN|B Chain B, Complex Structure Of Human Gar Tfase And Substrate
Beta-Gar
pdb|1MEN|C Chain C, Complex Structure Of Human Gar Tfase And Substrate
Beta-Gar
Length = 223
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 44/62 (70%), Gaps = 2/62 (3%)
Query: 10 RKRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVST 69
R VAVLISGTG+NL++L+++T R A+I +V+SNK V GL+ A AGIPT+V
Sbjct: 11 RILVAVLISGTGSNLQALIDST--REPNSSAQIDIVISNKAAVAGLDKAERAGIPTRVIN 68
Query: 70 YK 71
+K
Sbjct: 69 HK 70
>pdb|3LP8|A Chain A, Crystal Structure Of Phosphoribosylamine-Glycine Ligase
From Ehrlichia Chaffeensis
Length = 442
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 14/109 (12%)
Query: 156 FSLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILM 215
F+LV DG ++ +QD+K +N+KGPNTGGMG+Y +I+T+ + I I+
Sbjct: 217 FTLV----DGSNPVILGVAQDYKTIGDNNKGPNTGGMGSYSKPNIITQEMEHIIIQKIIY 272
Query: 216 RVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNR-REKEDNPEEGDP 263
IK M F G + A + +N + E N GDP
Sbjct: 273 PTIKAMFNMNIQF---------RGLLFAGIIIKKNEPKLLEYNVRFGDP 312
>pdb|1VKZ|A Chain A, Crystal Structure Of Phosphoribosylamine--Glycine Ligase
(Tm1250) From Thermotoga Maritima At 2.30 A Resolution
pdb|1VKZ|B Chain B, Crystal Structure Of Phosphoribosylamine--Glycine Ligase
(Tm1250) From Thermotoga Maritima At 2.30 A Resolution
Length = 412
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 163 TDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKK--EIHDTILMRVIKK 220
+G+ ++P +D+KR + D+GPNTGG G++ P +I ++ KK E+ D L V K+
Sbjct: 203 VNGRNFVILPFVRDYKRLXDGDRGPNTGGXGSWGPVEIPSDTIKKIEELFDKTLWGVEKE 262
Query: 221 MIA 223
A
Sbjct: 263 GYA 265
>pdb|3KCQ|A Chain A, Crystal Structure Of Phosphoribosylglycinamide
Formyltransferase From Anaplasma Phagocytophilum
pdb|3KCQ|B Chain B, Crystal Structure Of Phosphoribosylglycinamide
Formyltransferase From Anaplasma Phagocytophilum
pdb|3KCQ|C Chain C, Crystal Structure Of Phosphoribosylglycinamide
Formyltransferase From Anaplasma Phagocytophilum
pdb|3KCQ|D Chain D, Crystal Structure Of Phosphoribosylglycinamide
Formyltransferase From Anaplasma Phagocytophilum
Length = 215
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 7 MVQRKRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTK 66
M + RV VLISG G+NL++L +A S I V+SN GL IA++ GIPT
Sbjct: 5 MKKELRVGVLISGRGSNLEALAKAFSTEES--SVVISCVISNNAEARGLLIAQSYGIPTF 62
Query: 67 V 67
V
Sbjct: 63 V 63
>pdb|4DS3|A Chain A, Crystal Structure Of Phosphoribosylglycinamide
Formyltransferase From Brucella Melitensis
Length = 209
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 8 VQRKRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKV 67
++R RV + ISG G+N+++L+ A ++ AEIV V S+K GL A AGI T+V
Sbjct: 5 MKRNRVVIFISGGGSNMEALIRAA--QAPGFPAEIVAVFSDKAEAGGLAKAEAAGIATQV 62
Query: 68 STYK 71
K
Sbjct: 63 FKRK 66
>pdb|1GRC|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase From Escherichia Coli At 3.0 Angstroms
Resolution: A Target Enzyme For Chemotherapy
pdb|1GRC|B Chain B, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase From Escherichia Coli At 3.0 Angstroms
Resolution: A Target Enzyme For Chemotherapy
pdb|1GAR|A Chain A, Towards Structure-Based Drug Design: Crystal Structure
Of A Multisubstrate Adduct Complex Of Glycinamide
Ribonucleotide Transformylase At 1.96 Angstroms
Resolution
pdb|1GAR|B Chain B, Towards Structure-Based Drug Design: Crystal Structure
Of A Multisubstrate Adduct Complex Of Glycinamide
Ribonucleotide Transformylase At 1.96 Angstroms
Resolution
pdb|1C2T|A Chain A, New Insights Into Inhibitor Design From The Crystal
Structure And Nmr Studies Of E. Coli Gar Transformylase
In Complex With Beta-Gar And
10-Formyl-5,8,10-Trideazafolic Acid.
pdb|1C2T|B Chain B, New Insights Into Inhibitor Design From The Crystal
Structure And Nmr Studies Of E. Coli Gar Transformylase
In Complex With Beta-Gar And
10-Formyl-5,8,10-Trideazafolic Acid.
pdb|1JKX|A Chain A, Unexpected Formation Of An Epoxide-Derived
Multisubstrate Adduct Inhibitor On The Active Site Of
Gar Transformylase
pdb|1JKX|B Chain B, Unexpected Formation Of An Epoxide-Derived
Multisubstrate Adduct Inhibitor On The Active Site Of
Gar Transformylase
pdb|1JKX|C Chain C, Unexpected Formation Of An Epoxide-Derived
Multisubstrate Adduct Inhibitor On The Active Site Of
Gar Transformylase
pdb|1JKX|D Chain D, Unexpected Formation Of An Epoxide-Derived
Multisubstrate Adduct Inhibitor On The Active Site Of
Gar Transformylase
pdb|1CDE|A Chain A, Structures Of Apo And Complexed Escherichia Coli
Glycinamide Ribonucleotide Transformylase
pdb|1CDE|B Chain B, Structures Of Apo And Complexed Escherichia Coli
Glycinamide Ribonucleotide Transformylase
pdb|1CDE|C Chain C, Structures Of Apo And Complexed Escherichia Coli
Glycinamide Ribonucleotide Transformylase
pdb|1CDE|D Chain D, Structures Of Apo And Complexed Escherichia Coli
Glycinamide Ribonucleotide Transformylase
Length = 212
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 8/65 (12%)
Query: 13 VAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKH 72
+ VLISG G+NL+++++A +++ ++ + V SNK + GL AR AGI T H
Sbjct: 3 IVVLISGNGSNLQAIIDAC--KTNKIKGTVRAVFSNKADAFGLERARQAGIAT------H 54
Query: 73 TLILS 77
TLI S
Sbjct: 55 TLIAS 59
>pdb|2GAR|A Chain A, A Ph-dependent Stablization Of An Active Site Loop
Observed From Low And High Ph Crystal Structures Of
Mutant Monomeric Glycinamide Ribonucleotide
Transformylase
pdb|3GAR|A Chain A, A Ph-dependent Stablization Of An Active Site Loop
Observed From Low And High Ph Crystal Structures Of
Mutant Monomeric Glycinamide Ribonucleotide
Transformylase
Length = 212
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 8/65 (12%)
Query: 13 VAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKH 72
+ VLISG G+NL+++++A +++ ++ + V SNK + GL AR AGI T H
Sbjct: 3 IVVLISGNGSNLQAIIDAC--KTNKIKGTVRAVFSNKADAFGLERARQAGIAT------H 54
Query: 73 TLILS 77
TLI S
Sbjct: 55 TLIAS 59
>pdb|1CDD|A Chain A, Structures Of Apo And Complexed Escherichia Coli
Glycinamide Ribonucleotide Transformylase
pdb|1CDD|B Chain B, Structures Of Apo And Complexed Escherichia Coli
Glycinamide Ribonucleotide Transformylase
Length = 212
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 8/65 (12%)
Query: 13 VAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKH 72
+ VLISG G+NL+++++A +++ ++ + V SNK + GL AR AGI T H
Sbjct: 3 IVVLISGNGSNLQAIIDAC--KTNKIKGTVRAVFSNKADAFGLERARQAGIAT------H 54
Query: 73 TLILS 77
TLI S
Sbjct: 55 TLIAS 59
>pdb|1C3E|A Chain A, New Insights Into Inhibitor Design From The Crystal
Structure And Nmr Studies Of E. Coli Gar Transformylate
In Complex With Beta-Gar And
10-Formyl-5,8,10-Trideazafolic Acid.
pdb|1C3E|B Chain B, New Insights Into Inhibitor Design From The Crystal
Structure And Nmr Studies Of E. Coli Gar Transformylate
In Complex With Beta-Gar And
10-Formyl-5,8,10-Trideazafolic Acid
Length = 209
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 8/65 (12%)
Query: 13 VAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKH 72
+ VLISG G+NL+++++A +++ ++ + V SNK + GL AR AGI T H
Sbjct: 3 IVVLISGNGSNLQAIIDAC--KTNKIKGTVRAVFSNKADAFGLERARQAGIAT------H 54
Query: 73 TLILS 77
TLI S
Sbjct: 55 TLIAS 59
>pdb|3AUF|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase 1 From Symbiobacterium Toebii
Length = 229
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 34/52 (65%), Gaps = 2/52 (3%)
Query: 12 RVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGI 63
R+ VLISG+GTNL+++L+ R + + +V+S++ + GL AR AG+
Sbjct: 24 RIGVLISGSGTNLQAILDGC--REGRIPGRVAVVISDRADAYGLERARRAGV 73
>pdb|3TQR|A Chain A, Structure Of The Phosphoribosylglycinamide
Formyltransferase (Purn) In Complex With Ches From
Coxiella Burnetii
Length = 215
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 13 VAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKV 67
+ VLISG GTNL++++ A I EI V+SN+ + GL A+ A IPT +
Sbjct: 8 IVVLISGNGTNLQAIIGAIQKGLAI---EIRAVISNRADAYGLKRAQQADIPTHI 59
>pdb|3AV3|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase 1 From Geobacillus Kaustophilus
Length = 212
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 11 KRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTY 70
KR+AV SG+GTN +++++A + R D + A + L+V ++ + + A +P V +
Sbjct: 4 KRLAVFASGSGTNFQAIVDA-AKRGD-LPARVALLVCDRPGAKVIERAARENVPAFVFSP 61
Query: 71 K 71
K
Sbjct: 62 K 62
>pdb|2YWR|A Chain A, Crystal Structure Of Gar Transformylase From Aquifex
Aeolicus
Length = 216
Score = 30.8 bits (68), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 14/66 (21%)
Query: 12 RVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSN-----------KHNVEGLNIARN 60
++ VL+SG G+NL+++++A S + A I LV+S+ KHNVE I R
Sbjct: 3 KIGVLVSGRGSNLQAIIDAIE--SGKVNASIELVISDNPKAYAIERCKKHNVECKVIQRK 60
Query: 61 AGIPTK 66
P+K
Sbjct: 61 E-FPSK 65
>pdb|3P9X|A Chain A, Crystal Structure Of Phosphoribosylglycinamide
Formyltransferase From Bacillus Halodurans
pdb|3P9X|B Chain B, Crystal Structure Of Phosphoribosylglycinamide
Formyltransferase From Bacillus Halodurans
Length = 211
Score = 30.8 bits (68), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 28/39 (71%), Gaps = 2/39 (5%)
Query: 11 KRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNK 49
KRVA+ SG+GTN +++++ S ++ + E+ L++++K
Sbjct: 3 KRVAIFASGSGTNAEAIIQ--SQKAGQLPCEVALLITDK 39
>pdb|1SQJ|A Chain A, Crystal Structure Analysis Of Oligoxyloglucan
Reducing-End- Specific Cellobiohydrolase (Oxg-Rcbh)
pdb|1SQJ|B Chain B, Crystal Structure Analysis Of Oligoxyloglucan
Reducing-End- Specific Cellobiohydrolase (Oxg-Rcbh)
Length = 789
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 122 VGAVEKASLLPKVKDVAAGDVVIALPSSGI-HSNGF 156
G V SL+P V AGDV + +P G+ HS F
Sbjct: 628 AGLVTGTSLMPAVNPWVAGDVWVPVPEGGLFHSTDF 663
>pdb|2EBS|A Chain A, Crystal Structure Anaalysis Of Oligoxyloglucan
Reducing-End- Specific Cellobiohydrolase (Oxg-Rcbh)
D465n Mutant Complexed With A Xyloglucan Heptasaccharide
pdb|2EBS|B Chain B, Crystal Structure Anaalysis Of Oligoxyloglucan
Reducing-End- Specific Cellobiohydrolase (Oxg-Rcbh)
D465n Mutant Complexed With A Xyloglucan Heptasaccharide
Length = 789
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 122 VGAVEKASLLPKVKDVAAGDVVIALPSSGI-HSNGF 156
G V SL+P V AGDV + +P G+ HS F
Sbjct: 628 AGLVTGTSLMPAVNPWVAGDVWVPVPEGGLFHSTDF 663
>pdb|3B2A|A Chain A, Crystal Structure Of The Archaeal Heat-Like Repeats
Protein Ton_1937 From Thermococcus Onnurineus Na1
pdb|3B2A|B Chain B, Crystal Structure Of The Archaeal Heat-Like Repeats
Protein Ton_1937 From Thermococcus Onnurineus Na1
Length = 265
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 13/117 (11%)
Query: 25 KSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLILSNSLQVMQ 84
K+L+ + D+MR E + V+S +E + R TY + L++S L
Sbjct: 118 KTLVSLLESPDDMMRIETIDVLSKLQPLEDSKLVR---------TYINELVVSPDLYTKV 168
Query: 85 KVGAKYSDIAPFSQDGGETA----ELPGLYQPGDYDLAGFAVGAVEKASLLPKVKDV 137
+ ++ S D G E+P L Q + + A+ +EKA P +++V
Sbjct: 169 AGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENV 225
>pdb|1K6I|A Chain A, Crystal Structure Of Nmra, A Negative Transcriptional
Regulator (Trigonal Form)
pdb|1K6J|A Chain A, Crystal Structure Of Nmra, A Negative Transcriptional
Regulator (Monoclinic Form)
pdb|1K6J|B Chain B, Crystal Structure Of Nmra, A Negative Transcriptional
Regulator (Monoclinic Form)
pdb|1K6X|A Chain A, Crystal Structure Of Nmra, A Negative Transcriptional
Regulator In Complex With Nad At 1.5 A Resolution
(Trigonal Form)
pdb|1TI7|A Chain A, Crystal Structure Of Nmra, A Negative Transcriptional
Regulator, In Complex With Nadp At 1.7a Resolution
pdb|2VUS|A Chain A, Crystal Structure Of Unliganded Nmra-Area Zinc Finger
Complex
pdb|2VUS|B Chain B, Crystal Structure Of Unliganded Nmra-Area Zinc Finger
Complex
pdb|2VUS|C Chain C, Crystal Structure Of Unliganded Nmra-Area Zinc Finger
Complex
pdb|2VUS|D Chain D, Crystal Structure Of Unliganded Nmra-Area Zinc Finger
Complex
pdb|2VUS|E Chain E, Crystal Structure Of Unliganded Nmra-Area Zinc Finger
Complex
pdb|2VUS|F Chain F, Crystal Structure Of Unliganded Nmra-Area Zinc Finger
Complex
pdb|2VUS|G Chain G, Crystal Structure Of Unliganded Nmra-Area Zinc Finger
Complex
pdb|2VUS|H Chain H, Crystal Structure Of Unliganded Nmra-Area Zinc Finger
Complex
pdb|2VUT|A Chain A, Crystal Structure Of Nad-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUT|B Chain B, Crystal Structure Of Nad-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUT|C Chain C, Crystal Structure Of Nad-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUT|D Chain D, Crystal Structure Of Nad-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUT|E Chain E, Crystal Structure Of Nad-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUT|F Chain F, Crystal Structure Of Nad-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUT|G Chain G, Crystal Structure Of Nad-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUT|H Chain H, Crystal Structure Of Nad-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUU|A Chain A, Crystal Structure Of Nadp-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUU|B Chain B, Crystal Structure Of Nadp-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUU|C Chain C, Crystal Structure Of Nadp-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUU|D Chain D, Crystal Structure Of Nadp-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUU|E Chain E, Crystal Structure Of Nadp-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUU|F Chain F, Crystal Structure Of Nadp-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUU|G Chain G, Crystal Structure Of Nadp-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUU|H Chain H, Crystal Structure Of Nadp-Bound Nmra-Area Zinc Finger
Complex
Length = 352
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 12/100 (12%)
Query: 7 MVQRKRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTK 66
M Q+K+ +++ TG SL+ + +RA++ H+++GL IP
Sbjct: 1 MAQQKKTIAVVNATGRQAASLIRVAAAVGHHVRAQV-------HSLKGLIAEELQAIPN- 52
Query: 67 VSTYKHTLILSNSLQVMQKV--GAKYSDIAPFSQDGGETA 104
V+ ++ L+ N++ +M + GA + I SQ G E A
Sbjct: 53 VTLFQGPLL--NNVPLMDTLFEGAHLAFINTTSQAGDEIA 90
>pdb|6CGT|A Chain A, Hoxa Complex Of Cyclodextrin Glycosyltransferase Mutant
Length = 684
Score = 27.3 bits (59), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 117 LAGFAVGAVEKASLLPKVKDVAAGDVVIALPSSGIHSNGFSLVLCFT-DGKTVKVM 171
+ G A+ + E + + VAAG+ + + +SG++SN ++ T D TV+ +
Sbjct: 535 VTGAAITSWEDTQIKVTIPSVAAGNYAVKVAASGVNSNAYNNFTILTGDQVTVRFV 590
>pdb|1XGK|A Chain A, Crystal Structure Of N12g And A18g Mutant Nmra
Length = 352
Score = 27.3 bits (59), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 12/100 (12%)
Query: 7 MVQRKRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTK 66
M Q+K+ ++ TG SL+ + +RA++ H+++GL IP
Sbjct: 1 MAQQKKTIAVVGATGRQGASLIRVAAAVGHHVRAQV-------HSLKGLIAEELQAIPN- 52
Query: 67 VSTYKHTLILSNSLQVMQKV--GAKYSDIAPFSQDGGETA 104
V+ ++ L+ N++ +M + GA + I SQ G E A
Sbjct: 53 VTLFQGPLL--NNVPLMDTLFEGAHLAFINTTSQAGDEIA 90
>pdb|1CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Refined At
2.0 Angstroms Resolution
Length = 684
Score = 27.3 bits (59), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 117 LAGFAVGAVEKASLLPKVKDVAAGDVVIALPSSGIHSNGFSLVLCFT-DGKTVKVM 171
+ G A+ + E + + VAAG+ + + +SG++SN ++ T D TV+ +
Sbjct: 535 VTGAAITSWEDTQIKVTIPSVAAGNYAVKVAASGVNSNAYNNFTILTGDQVTVRFV 590
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.132 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,811,095
Number of Sequences: 62578
Number of extensions: 323830
Number of successful extensions: 645
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 599
Number of HSP's gapped (non-prelim): 41
length of query: 263
length of database: 14,973,337
effective HSP length: 97
effective length of query: 166
effective length of database: 8,903,271
effective search space: 1477942986
effective search space used: 1477942986
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.9 bits)