Query psy13615
Match_columns 263
No_of_seqs 211 out of 2534
Neff 6.8
Searched_HMMs 46136
Date Fri Aug 16 15:43:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13615.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13615hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0299 PurN Folate-dependent 100.0 1.7E-42 3.8E-47 294.8 11.9 176 11-228 1-191 (200)
2 KOG3076|consensus 100.0 1.2E-34 2.7E-39 244.0 9.4 175 10-226 6-197 (206)
3 PF01071 GARS_A: Phosphoribosy 100.0 2.1E-33 4.5E-38 241.8 6.4 112 140-263 81-192 (194)
4 COG0151 PurD Phosphoribosylami 100.0 5.2E-32 1.1E-36 253.3 13.3 210 39-263 63-292 (428)
5 PRK13010 purU formyltetrahydro 100.0 5.4E-32 1.2E-36 246.7 10.7 181 2-226 84-279 (289)
6 TIGR00655 PurU formyltetrahydr 100.0 1.1E-31 2.4E-36 243.8 11.6 173 10-226 84-270 (280)
7 PLN02331 phosphoribosylglycina 100.0 8.1E-32 1.8E-36 234.8 9.8 180 12-228 1-195 (207)
8 PRK06027 purU formyltetrahydro 100.0 2.2E-31 4.7E-36 242.7 10.8 173 10-226 89-275 (286)
9 PRK13011 formyltetrahydrofolat 100.0 1.3E-30 2.8E-35 237.5 11.2 180 3-226 81-275 (286)
10 KOG0237|consensus 100.0 5.9E-30 1.3E-34 245.1 10.7 114 139-263 185-298 (788)
11 PLN02828 formyltetrahydrofolat 100.0 2.3E-29 4.9E-34 226.6 12.3 171 9-225 69-256 (268)
12 TIGR00639 PurN phosphoribosylg 99.9 5.8E-28 1.3E-32 208.2 10.5 171 11-223 1-186 (190)
13 PRK05647 purN phosphoribosylgl 99.9 4.2E-27 9E-32 204.4 9.6 177 10-228 1-192 (200)
14 COG0150 PurM Phosphoribosylami 99.9 7.3E-26 1.6E-30 206.8 5.5 139 14-165 55-200 (345)
15 KOG0237|consensus 99.9 5.4E-24 1.2E-28 204.3 6.7 182 10-211 485-673 (788)
16 COG0788 PurU Formyltetrahydrof 99.9 2.4E-22 5.2E-27 178.0 8.1 172 10-225 90-275 (287)
17 PF00551 Formyl_trans_N: Formy 99.9 2.6E-22 5.7E-27 171.4 7.1 170 11-222 1-178 (181)
18 PRK13789 phosphoribosylamine-- 99.8 2.5E-20 5.5E-25 178.6 12.2 207 40-263 69-298 (426)
19 PRK06395 phosphoribosylamine-- 99.8 2.1E-19 4.6E-24 172.7 12.0 111 140-263 182-296 (435)
20 PLN02285 methionyl-tRNA formyl 99.8 1.3E-19 2.9E-24 168.6 8.4 169 10-223 6-200 (334)
21 PRK05784 phosphoribosylamine-- 99.8 1.4E-18 3.1E-23 168.9 11.4 111 141-263 198-313 (486)
22 PLN02257 phosphoribosylamine-- 99.7 2.5E-17 5.3E-22 158.4 12.2 209 40-263 63-293 (434)
23 PRK06988 putative formyltransf 99.6 6.5E-16 1.4E-20 142.7 8.2 159 11-223 3-184 (312)
24 PRK13790 phosphoribosylamine-- 99.6 4.7E-15 1E-19 140.2 12.5 220 22-263 14-253 (379)
25 COG0223 Fmt Methionyl-tRNA for 99.6 6.4E-15 1.4E-19 135.1 9.3 161 10-224 1-187 (307)
26 TIGR00460 fmt methionyl-tRNA f 99.5 1.3E-14 2.7E-19 134.2 7.4 159 11-223 1-185 (313)
27 PRK00005 fmt methionyl-tRNA fo 99.5 1.7E-14 3.7E-19 133.0 7.5 159 11-223 1-185 (309)
28 PRK00885 phosphoribosylamine-- 99.5 4.7E-13 1E-17 127.8 12.1 111 141-263 181-291 (420)
29 PRK08125 bifunctional UDP-gluc 99.4 2.1E-13 4.6E-18 137.3 8.4 159 11-223 1-182 (660)
30 PRK07579 hypothetical protein; 99.3 3.3E-12 7.2E-17 113.9 5.5 155 10-223 1-169 (245)
31 TIGR00877 purD phosphoribosyla 99.3 4.5E-11 9.8E-16 114.0 12.2 111 141-263 183-293 (423)
32 PLN02557 phosphoribosylformylg 99.1 1.5E-11 3.2E-16 116.2 1.5 138 13-163 99-240 (379)
33 KOG2452|consensus 97.5 0.00013 2.9E-09 70.2 5.8 133 39-214 23-168 (881)
34 KOG3082|consensus 97.0 0.00022 4.7E-09 65.3 1.2 84 110-211 80-170 (338)
35 PRK09288 purT phosphoribosylgl 96.6 0.012 2.6E-07 55.5 9.2 57 192-263 232-288 (395)
36 TIGR00878 purM phosphoribosyla 96.6 0.00029 6.2E-09 65.8 -2.1 107 40-157 79-189 (332)
37 cd02196 PurM PurM (Aminoimidaz 96.4 0.00093 2E-08 61.2 0.5 108 38-156 45-156 (297)
38 PRK05385 phosphoribosylaminoim 96.4 0.00069 1.5E-08 63.0 -0.8 108 39-157 78-189 (327)
39 cd06061 PurM-like1 AIR synthas 95.5 0.0093 2E-07 54.3 2.9 101 40-154 61-166 (298)
40 TIGR01161 purK phosphoribosyla 95.4 0.092 2E-06 49.0 8.9 55 195-263 214-268 (352)
41 PRK08300 acetaldehyde dehydrog 95.3 0.032 6.9E-07 51.7 5.4 55 7-67 1-56 (302)
42 PLN02735 carbamoyl-phosphate s 95.2 0.081 1.7E-06 57.0 8.8 92 153-262 787-878 (1102)
43 TIGR02124 hypE hydrogenase exp 94.7 0.01 2.2E-07 55.0 0.5 101 41-153 56-161 (320)
44 cd02197 HypE HypE (Hydrogenase 94.4 0.016 3.4E-07 53.0 0.9 100 42-153 62-166 (293)
45 cd02195 SelD Selenophosphate s 94.0 0.014 2.9E-07 53.4 -0.3 77 64-150 91-175 (287)
46 TIGR00476 selD selenium donor 93.3 0.14 3.1E-06 47.9 5.2 67 76-152 116-184 (347)
47 PRK12815 carB carbamoyl phosph 93.3 0.3 6.5E-06 52.6 8.2 88 155-262 754-841 (1068)
48 PRK00943 selenophosphate synth 93.0 0.047 1E-06 51.3 1.5 67 76-152 115-183 (347)
49 COG4569 MhpF Acetaldehyde dehy 93.0 0.2 4.3E-06 44.1 5.2 56 7-67 1-57 (310)
50 PRK07206 hypothetical protein; 92.6 0.54 1.2E-05 44.6 8.2 34 219-261 256-289 (416)
51 PRK06111 acetyl-CoA carboxylas 92.5 0.36 7.8E-06 46.4 6.9 53 196-261 242-294 (450)
52 cd02691 PurM-like2 AIR synthas 92.2 0.054 1.2E-06 51.0 0.8 67 76-147 101-170 (346)
53 PRK05294 carB carbamoyl phosph 92.2 0.54 1.2E-05 50.6 8.4 87 155-261 756-842 (1066)
54 PF02655 ATP-grasp_3: ATP-gras 92.0 0.25 5.4E-06 41.1 4.5 37 216-261 122-159 (161)
55 cd00396 PurM-like AIR (aminoim 91.9 0.13 2.9E-06 44.6 2.9 78 64-146 39-121 (222)
56 TIGR01369 CPSaseII_lrg carbamo 91.7 0.57 1.2E-05 50.4 7.9 89 153-261 754-842 (1050)
57 PRK05731 thiamine monophosphat 91.4 0.083 1.8E-06 48.7 1.2 83 63-155 80-167 (318)
58 cd02192 PurM-like3 AIR synthas 91.3 0.16 3.5E-06 46.4 2.8 87 43-146 72-160 (283)
59 cd02194 ThiL ThiL (Thiamine-mo 91.2 0.45 9.7E-06 43.2 5.6 86 62-157 76-166 (291)
60 PRK06019 phosphoribosylaminoim 91.1 1.4 2.9E-05 41.7 9.0 57 191-262 210-269 (372)
61 PRK01372 ddl D-alanine--D-alan 90.8 1.1 2.4E-05 40.6 7.8 64 184-261 208-271 (304)
62 TIGR01379 thiL thiamine-monoph 90.4 0.2 4.2E-06 46.3 2.6 85 62-156 77-166 (317)
63 TIGR01205 D_ala_D_alaTIGR D-al 90.3 1.4 3.1E-05 40.0 8.1 66 182-261 221-286 (315)
64 TIGR03267 methan_mark_2 putati 89.8 0.18 3.9E-06 46.8 1.9 91 40-146 79-171 (323)
65 PRK02186 argininosuccinate lya 89.8 1.5 3.2E-05 46.3 8.8 99 140-261 180-278 (887)
66 PRK12815 carB carbamoyl phosph 89.3 1.9 4.1E-05 46.5 9.3 102 140-261 202-304 (1068)
67 PRK14105 selenophosphate synth 89.1 0.65 1.4E-05 43.5 5.0 67 76-152 112-180 (345)
68 TIGR03215 ac_ald_DH_ac acetald 88.8 1.2 2.6E-05 40.9 6.4 51 10-67 1-53 (285)
69 COG0309 HypE Hydrogenase matur 87.9 1.4 3E-05 41.4 6.2 99 41-153 73-177 (339)
70 PF02786 CPSase_L_D2: Carbamoy 87.8 1 2.2E-05 39.5 5.0 84 160-261 98-181 (211)
71 PRK14571 D-alanyl-alanine synt 86.9 3.6 7.8E-05 37.4 8.3 91 154-261 173-266 (299)
72 TIGR00514 accC acetyl-CoA carb 86.6 4.8 0.0001 38.9 9.5 57 192-261 238-294 (449)
73 PRK05294 carB carbamoyl phosph 85.5 3.2 7E-05 44.7 8.3 65 185-261 240-305 (1066)
74 cd02203 PurL_repeat1 PurL subu 85.5 1.2 2.6E-05 41.0 4.5 115 14-146 27-157 (313)
75 PLN02735 carbamoyl-phosphate s 85.2 3.7 8E-05 44.5 8.6 66 184-261 256-322 (1102)
76 TIGR01369 CPSaseII_lrg carbamo 84.8 4.5 9.7E-05 43.7 9.0 66 184-261 238-303 (1050)
77 TIGR01142 purT phosphoribosylg 84.6 1.3 2.8E-05 41.5 4.4 53 195-262 222-274 (380)
78 COG2144 Selenophosphate synthe 84.1 3.8 8.2E-05 37.9 6.9 92 40-146 77-169 (324)
79 TIGR02712 urea_carbox urea car 82.8 5.8 0.00013 43.5 8.9 58 192-261 236-293 (1201)
80 PRK01966 ddl D-alanyl-alanine 82.8 4.7 0.0001 37.4 7.2 67 181-261 236-302 (333)
81 PRK08591 acetyl-CoA carboxylas 80.7 10 0.00023 36.4 9.1 57 192-261 238-294 (451)
82 PRK12833 acetyl-CoA carboxylas 80.3 9.9 0.00021 37.1 8.8 59 191-261 239-297 (467)
83 PRK05586 biotin carboxylase; V 79.9 5.2 0.00011 38.7 6.7 58 191-261 237-294 (447)
84 COG0482 TrmU Predicted tRNA(5- 78.8 6.5 0.00014 37.3 6.7 58 9-72 2-73 (356)
85 TIGR01736 FGAM_synth_II phosph 77.3 6.7 0.00015 40.3 6.9 94 41-147 92-193 (715)
86 PF03054 tRNA_Me_trans: tRNA m 76.2 6 0.00013 37.6 5.7 66 11-86 1-82 (356)
87 PRK14572 D-alanyl-alanine synt 75.7 6.9 0.00015 36.5 6.0 63 185-262 255-317 (347)
88 cd01994 Alpha_ANH_like_IV This 74.2 21 0.00044 30.8 8.1 68 12-86 1-81 (194)
89 PRK05447 1-deoxy-D-xylulose 5- 73.7 22 0.00048 34.2 8.8 55 10-69 1-57 (385)
90 COG0528 PyrH Uridylate kinase 72.3 11 0.00025 33.7 6.1 63 7-74 121-221 (238)
91 PF13535 ATP-grasp_4: ATP-gras 71.9 6.7 0.00015 32.0 4.5 26 229-261 155-180 (184)
92 COG1778 Low specificity phosph 70.5 5.3 0.00011 33.8 3.4 46 43-90 54-99 (170)
93 PRK08462 biotin carboxylase; V 69.2 7.9 0.00017 37.2 4.9 54 195-261 243-296 (445)
94 COG2117 Predicted subunit of t 68.4 11 0.00023 32.2 4.8 53 12-70 2-59 (198)
95 PRK10696 tRNA 2-thiocytidine b 68.1 18 0.00039 32.3 6.7 65 5-70 23-95 (258)
96 TIGR03590 PseG pseudaminic aci 68.1 27 0.00059 31.5 7.9 85 12-121 1-90 (279)
97 PRK06524 biotin carboxylase-li 68.0 17 0.00037 36.1 6.9 58 195-262 268-325 (493)
98 COG0611 ThiL Thiamine monophos 67.9 16 0.00035 34.2 6.4 79 57-146 74-157 (317)
99 PRK12767 carbamoyl phosphate s 67.9 10 0.00023 34.4 5.2 28 227-262 245-272 (326)
100 PRK08463 acetyl-CoA carboxylas 67.7 9.9 0.00021 37.2 5.3 57 192-261 238-294 (478)
101 PLN02948 phosphoribosylaminoim 67.1 12 0.00027 37.7 5.9 53 196-262 240-292 (577)
102 PRK08654 pyruvate carboxylase 61.3 16 0.00036 36.0 5.5 56 192-261 238-293 (499)
103 PRK01213 phosphoribosylformylg 59.4 24 0.00051 36.5 6.5 93 42-147 105-205 (724)
104 cd05017 SIS_PGI_PMI_1 The memb 58.1 41 0.00088 26.1 6.3 61 10-75 43-103 (119)
105 PRK07178 pyruvate carboxylase 57.6 25 0.00055 34.3 6.1 57 192-261 237-293 (472)
106 PRK00143 mnmA tRNA-specific 2- 57.2 42 0.00092 31.5 7.3 54 11-71 1-72 (346)
107 PRK14664 tRNA-specific 2-thiou 56.7 55 0.0012 31.1 8.0 54 11-71 6-64 (362)
108 PLN02696 1-deoxy-D-xylulose-5- 55.7 25 0.00054 34.5 5.5 54 10-68 57-112 (454)
109 PRK07634 pyrroline-5-carboxyla 54.9 21 0.00046 31.0 4.6 20 7-26 1-21 (245)
110 PF02670 DXP_reductoisom: 1-de 54.2 61 0.0013 26.2 6.8 52 13-69 1-54 (129)
111 TIGR02432 lysidine_TilS_N tRNA 54.1 41 0.00089 28.0 6.1 56 12-70 1-66 (189)
112 PRK14569 D-alanyl-alanine synt 53.7 20 0.00043 32.6 4.4 58 190-261 209-266 (296)
113 TIGR00289 conserved hypothetic 53.0 1.1E+02 0.0023 27.1 8.7 67 12-86 2-81 (222)
114 KOG2862|consensus 52.5 59 0.0013 30.7 7.1 68 13-86 69-138 (385)
115 PRK06849 hypothetical protein; 51.5 21 0.00045 33.6 4.3 29 226-261 249-277 (389)
116 PLN00200 argininosuccinate syn 51.4 60 0.0013 31.4 7.3 58 5-70 2-67 (404)
117 PRK14665 mnmA tRNA-specific 2- 50.0 50 0.0011 31.3 6.6 55 10-71 5-69 (360)
118 PRK13820 argininosuccinate syn 48.7 70 0.0015 30.9 7.3 55 11-71 3-65 (394)
119 cd01998 tRNA_Me_trans tRNA met 48.5 78 0.0017 29.7 7.6 53 12-71 1-69 (349)
120 PRK00994 F420-dependent methyl 47.6 35 0.00075 30.9 4.7 63 10-72 29-97 (277)
121 TIGR00243 Dxr 1-deoxy-D-xylulo 46.4 52 0.0011 31.7 6.0 54 11-69 2-57 (389)
122 COG2185 Sbm Methylmalonyl-CoA 45.9 63 0.0014 26.8 5.7 79 8-90 10-89 (143)
123 COG0458 CarB Carbamoylphosphat 44.7 46 0.001 32.1 5.4 66 184-261 226-291 (400)
124 cd02204 PurL_repeat2 PurL subu 44.3 49 0.0011 29.2 5.3 74 77-153 72-148 (264)
125 TIGR01761 thiaz-red thiazoliny 43.9 31 0.00067 32.5 4.1 51 9-65 2-52 (343)
126 COG1821 Predicted ATP-utilizin 43.0 92 0.002 28.6 6.7 45 208-263 214-259 (307)
127 cd02071 MM_CoA_mut_B12_BD meth 42.5 1.6E+02 0.0035 22.9 7.7 48 39-86 27-74 (122)
128 TIGR00420 trmU tRNA (5-methyla 42.5 55 0.0012 30.9 5.5 54 11-71 1-72 (352)
129 TIGR00268 conserved hypothetic 41.9 98 0.0021 27.5 6.8 55 9-70 11-73 (252)
130 COG2179 Predicted hydrolase of 40.3 49 0.0011 28.3 4.3 34 42-75 64-97 (175)
131 TIGR00768 rimK_fam alpha-L-glu 39.9 56 0.0012 28.6 4.9 27 225-261 231-257 (277)
132 cd02193 PurL Formylglycinamide 39.8 75 0.0016 28.5 5.8 79 64-146 42-136 (272)
133 TIGR01235 pyruv_carbox pyruvat 39.6 66 0.0014 35.3 6.2 56 193-261 239-294 (1143)
134 PF14398 ATPgrasp_YheCD: YheC/ 39.3 80 0.0017 28.4 5.9 40 214-261 194-234 (262)
135 cd00319 Ribosomal_S12_like Rib 39.0 21 0.00045 27.5 1.7 24 2-25 37-60 (95)
136 PF00586 AIRS: AIR synthase re 38.9 12 0.00026 27.9 0.4 47 47-103 45-96 (96)
137 PRK12446 undecaprenyldiphospho 38.4 1.1E+02 0.0023 28.6 6.8 60 10-73 1-61 (352)
138 TIGR00640 acid_CoA_mut_C methy 38.1 2.1E+02 0.0046 22.9 7.7 60 21-86 18-77 (132)
139 PRK14568 vanB D-alanine--D-lac 38.0 49 0.0011 30.7 4.5 52 196-261 260-311 (343)
140 cd06167 LabA_like LabA_like pr 37.8 84 0.0018 24.9 5.3 34 39-72 99-133 (149)
141 PRK12999 pyruvate carboxylase; 37.8 68 0.0015 35.3 6.0 56 193-261 243-298 (1146)
142 PRK10660 tilS tRNA(Ile)-lysidi 37.7 77 0.0017 30.8 5.9 63 6-70 11-83 (436)
143 cd01993 Alpha_ANH_like_II This 37.3 1.3E+02 0.0028 24.5 6.6 59 12-71 1-69 (185)
144 PF01171 ATP_bind_3: PP-loop f 37.2 1.3E+02 0.0028 25.0 6.6 57 12-71 1-67 (182)
145 KOG2741|consensus 37.1 1.3E+02 0.0027 28.7 6.9 61 7-76 3-64 (351)
146 PF01993 MTD: methylene-5,6,7, 37.0 34 0.00075 30.9 3.0 63 10-72 28-96 (276)
147 cd03368 Ribosomal_S12 S12-like 36.6 24 0.00051 27.8 1.7 24 2-25 50-73 (108)
148 PRK14090 phosphoribosylformylg 34.6 70 0.0015 32.6 5.2 82 64-153 100-187 (601)
149 COG0743 Dxr 1-deoxy-D-xylulose 34.5 95 0.0021 29.8 5.6 54 10-68 1-56 (385)
150 PRK02261 methylaspartate mutas 34.4 2.5E+02 0.0054 22.7 8.6 48 39-86 31-78 (137)
151 PRK10446 ribosomal protein S6 33.7 78 0.0017 28.7 5.0 27 224-261 240-266 (300)
152 PRK03868 glucose-6-phosphate i 33.6 86 0.0019 30.3 5.4 59 12-71 113-175 (410)
153 PF02222 ATP-grasp: ATP-grasp 33.4 1.6E+02 0.0034 24.8 6.5 85 153-260 75-161 (172)
154 PRK00973 glucose-6-phosphate i 32.2 1.1E+02 0.0023 30.1 5.8 58 13-71 135-198 (446)
155 cd01991 Asn_Synthase_B_C The C 31.8 98 0.0021 27.1 5.2 65 3-70 8-77 (269)
156 COG1927 Mtd Coenzyme F420-depe 31.6 95 0.002 27.7 4.8 60 10-72 29-97 (277)
157 TIGR00853 pts-lac PTS system, 31.5 1.1E+02 0.0023 23.2 4.6 22 54-75 67-88 (95)
158 PRK00509 argininosuccinate syn 31.3 1.9E+02 0.0041 28.0 7.3 55 11-71 3-64 (399)
159 TIGR01133 murG undecaprenyldip 30.6 2.9E+02 0.0063 24.7 8.2 55 12-72 2-59 (348)
160 PRK04527 argininosuccinate syn 30.4 1.2E+02 0.0026 29.4 5.7 56 10-72 2-66 (400)
161 cd00860 ThrRS_anticodon ThrRS 30.3 1.2E+02 0.0027 21.5 4.7 30 40-69 29-58 (91)
162 KOG0753|consensus 30.2 15 0.00033 34.0 -0.3 11 2-12 248-258 (317)
163 cd01992 PP-ATPase N-terminal d 30.0 1.6E+02 0.0036 24.1 6.0 54 12-68 1-64 (185)
164 PRK14561 hypothetical protein; 29.8 1.4E+02 0.003 25.5 5.6 53 11-71 1-59 (194)
165 COG0794 GutQ Predicted sugar p 29.7 53 0.0011 28.8 3.0 42 4-49 80-123 (202)
166 PF14397 ATPgrasp_ST: Sugar-tr 29.2 1.2E+02 0.0026 27.6 5.4 26 226-259 232-257 (285)
167 PF10087 DUF2325: Uncharacteri 29.0 95 0.0021 23.2 4.0 33 39-71 48-84 (97)
168 PRK12767 carbamoyl phosphate s 29.0 2E+02 0.0044 25.9 6.9 44 10-59 1-44 (326)
169 PF13344 Hydrolase_6: Haloacid 28.2 97 0.0021 23.5 3.9 23 53-75 21-43 (101)
170 CHL00051 rps12 ribosomal prote 28.2 40 0.00087 27.2 1.8 24 2-25 52-75 (123)
171 COG0673 MviM Predicted dehydro 27.4 1.9E+02 0.0041 26.1 6.4 50 9-64 2-53 (342)
172 PRK06849 hypothetical protein; 27.2 2.1E+02 0.0046 26.8 6.9 38 7-49 1-38 (389)
173 TIGR01670 YrbI-phosphatas 3-de 26.8 1.6E+02 0.0035 23.8 5.3 43 42-86 46-88 (154)
174 PRK09536 btuD corrinoid ABC tr 26.3 3.6E+02 0.0078 25.9 8.3 32 40-72 291-322 (402)
175 PRK13978 ribose-5-phosphate is 26.2 1.1E+02 0.0024 27.3 4.4 51 15-70 24-76 (228)
176 COG3453 Uncharacterized protei 26.2 1.8E+02 0.0039 23.6 5.1 45 42-86 29-83 (130)
177 PRK09590 celB cellobiose phosp 26.2 1.7E+02 0.0037 22.6 5.0 22 54-75 67-88 (104)
178 PF01380 SIS: SIS domain SIS d 26.2 2.9E+02 0.0063 20.8 7.8 33 40-72 54-90 (131)
179 PF09419 PGP_phosphatase: Mito 26.2 2.3E+02 0.0049 24.0 6.1 30 41-70 78-114 (168)
180 PRK05163 rpsL 30S ribosomal pr 26.2 47 0.001 26.8 1.8 24 2-25 52-75 (124)
181 cd01715 ETF_alpha The electron 26.1 2.9E+02 0.0064 22.6 6.8 34 38-71 27-61 (168)
182 PRK03379 vitamin B12-transport 25.9 1.1E+02 0.0024 27.0 4.5 50 15-72 56-105 (260)
183 PF13580 SIS_2: SIS domain; PD 25.8 1.1E+02 0.0024 24.4 4.1 30 39-68 103-136 (138)
184 PRK09484 3-deoxy-D-manno-octul 25.6 1.4E+02 0.0031 24.9 4.9 42 43-86 67-108 (183)
185 COG0394 Wzb Protein-tyrosine-p 25.4 1.2E+02 0.0026 24.6 4.2 56 10-67 2-63 (139)
186 COG3033 TnaA Tryptophanase [Am 25.4 1.7E+02 0.0036 28.4 5.6 43 22-67 172-224 (471)
187 COG2102 Predicted ATPases of P 25.4 4.9E+02 0.011 23.2 8.8 55 12-72 2-69 (223)
188 TIGR03025 EPS_sugtrans exopoly 25.3 5.2E+02 0.011 24.7 9.3 72 11-86 126-211 (445)
189 COG0603 Predicted PP-loop supe 24.9 1.9E+02 0.0041 25.7 5.6 53 10-69 2-62 (222)
190 cd01997 GMP_synthase_C The C-t 24.6 2.5E+02 0.0054 25.9 6.6 54 12-71 1-63 (295)
191 COG1606 ATP-utilizing enzymes 24.6 1.3E+02 0.0029 27.4 4.6 59 7-70 14-79 (269)
192 PRK11106 queuosine biosynthesi 24.6 2.5E+02 0.0053 24.9 6.4 54 11-71 2-64 (231)
193 TIGR00981 rpsL_bact ribosomal 24.3 50 0.0011 26.6 1.7 24 2-25 52-75 (124)
194 COG0120 RpiA Ribose 5-phosphat 24.2 1.4E+02 0.003 26.7 4.6 53 15-72 23-76 (227)
195 PRK14573 bifunctional D-alanyl 24.0 1.1E+02 0.0024 32.0 4.6 48 201-261 710-757 (809)
196 TIGR00032 argG argininosuccina 23.9 2.4E+02 0.0052 27.2 6.6 53 12-71 1-61 (394)
197 PF00164 Ribosom_S12_S23: Ribo 23.9 34 0.00075 27.5 0.7 24 2-25 51-74 (122)
198 PRK15408 autoinducer 2-binding 23.8 1E+02 0.0022 28.6 3.9 32 40-71 81-114 (336)
199 TIGR03759 conj_TIGR03759 integ 23.7 1E+02 0.0022 27.0 3.5 58 11-71 110-168 (200)
200 PF01408 GFO_IDH_MocA: Oxidore 23.4 1E+02 0.0022 23.2 3.3 47 12-64 2-49 (120)
201 cd05015 SIS_PGI_1 Phosphogluco 23.2 1.3E+02 0.0028 24.7 4.0 59 11-71 74-139 (158)
202 PRK13530 arsenate reductase; P 23.1 1.1E+02 0.0023 24.5 3.5 54 10-65 3-59 (133)
203 TIGR00884 guaA_Cterm GMP synth 23.0 2.9E+02 0.0062 25.6 6.7 56 10-71 16-80 (311)
204 PRK00726 murG undecaprenyldiph 22.6 4.8E+02 0.01 23.6 8.2 55 11-71 2-59 (357)
205 TIGR01736 FGAM_synth_II phosph 22.4 1.1E+02 0.0024 31.5 4.2 68 79-153 491-565 (715)
206 TIGR02726 phenyl_P_delta pheny 22.4 2.3E+02 0.005 23.7 5.5 43 42-86 52-94 (169)
207 PF13407 Peripla_BP_4: Peripla 22.4 1.4E+02 0.003 25.5 4.3 32 40-71 56-89 (257)
208 COG0300 DltE Short-chain dehyd 22.1 3.6E+02 0.0079 24.5 7.0 84 15-122 9-96 (265)
209 PRK01213 phosphoribosylformylg 22.0 81 0.0018 32.6 3.2 69 79-151 500-572 (724)
210 PF00733 Asn_synthase: Asparag 22.0 1.8E+02 0.004 24.7 5.0 63 3-70 10-79 (255)
211 COG0027 PurT Formate-dependent 21.1 4.1E+02 0.009 25.3 7.2 63 9-86 11-74 (394)
212 TIGR02128 G6PI_arch bifunction 21.1 1.6E+02 0.0034 27.3 4.6 59 9-72 65-123 (308)
213 COG1181 DdlA D-alanine-D-alani 21.0 2.7E+02 0.0059 25.9 6.2 70 179-261 217-287 (317)
214 PF03807 F420_oxidored: NADP o 20.6 1.3E+02 0.0028 21.8 3.3 50 12-66 1-51 (96)
215 PF13727 CoA_binding_3: CoA-bi 20.4 4.3E+02 0.0094 20.8 7.3 50 36-86 100-164 (175)
216 PF02441 Flavoprotein: Flavopr 20.3 74 0.0016 25.1 2.0 35 11-49 1-37 (129)
217 PF07492 Trehalase_Ca-bi: Neut 20.2 60 0.0013 19.7 1.0 15 235-249 15-29 (30)
218 KOG1145|consensus 20.0 4E+02 0.0086 27.4 7.2 94 4-106 194-294 (683)
No 1
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.7e-42 Score=294.75 Aligned_cols=176 Identities=27% Similarity=0.362 Sum_probs=155.4
Q ss_pred ccEEEEEcCcchhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCH-HHHHHHHHHhccc
Q psy13615 11 KRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLIL-SNSLQVMQKVGAK 89 (263)
Q Consensus 11 ~riavl~SG~Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~-~~~~~i~~~l~~~ 89 (263)
+||+||+||+|||||+|+++ ++.+.++++|++|+||+++|++++||+++|||++++++++|+++ +++.++++.+ +
T Consensus 1 ~ki~VlaSG~GSNlqaiida--~~~~~~~a~i~~Visd~~~A~~lerA~~~gIpt~~~~~k~~~~r~~~d~~l~~~l--~ 76 (200)
T COG0299 1 KKIAVLASGNGSNLQAIIDA--IKGGKLDAEIVAVISDKADAYALERAAKAGIPTVVLDRKEFPSREAFDRALVEAL--D 76 (200)
T ss_pred CeEEEEEeCCcccHHHHHHH--HhcCCCCcEEEEEEeCCCCCHHHHHHHHcCCCEEEeccccCCCHHHHHHHHHHHH--H
Confidence 58999999999999999987 45567789999999999999999999999999999999999877 8999999988 7
Q ss_pred cCCCCceeeeccccccCCCCcCCCcEEEeeeeeEE----ee--cCCcCCccccccCCcEEEEecC-CCCCccccceeEEE
Q psy13615 90 YSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGA----VE--KASLLPKVKDVAAGDVVIALPS-SGIHSNGFSLVLCF 162 (263)
Q Consensus 90 ~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~----~~--~~~~in~hpsl~~g~~ii~Lp~-~G~~~~g~Sl~~ai 162 (263)
. +++|+++|||||+.+ ++ +++++|+|||| ||+ +|+|+++.++
T Consensus 77 ~-------------------~~~dlvvLAGyMrIL~~~fl~~~~grIlNIHPSL--------LP~f~G~h~~~~A~---- 125 (200)
T COG0299 77 E-------------------YGPDLVVLAGYMRILGPEFLSRFEGRILNIHPSL--------LPAFPGLHAHEQAL---- 125 (200)
T ss_pred h-------------------cCCCEEEEcchHHHcCHHHHHHhhcceEecCccc--------ccCCCCchHHHHHH----
Confidence 7 999999999999942 22 47899999999 998 8999887554
Q ss_pred ecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHH-------HHHHHHHHHHhcCCCe
Q psy13615 163 TDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDT-------ILMRVIKKMIAEGTPF 228 (263)
Q Consensus 163 ~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~-------il~~~i~~~~~eg~~~ 228 (263)
+ .+++.+||| +| ++|+|+||||+++|..||+.++|+.+++++| +|+.+++++.+....-
T Consensus 126 -~-aG~k~sG~T-VH----~V~e~vD~GpII~Q~~Vpv~~~Dt~etl~~RV~~~Eh~lyp~~v~~~~~g~~~~ 191 (200)
T COG0299 126 -E-AGVKVSGCT-VH----FVTEGVDTGPIIAQAAVPVLPGDTAETLEARVLEQEHRLYPLAVKLLAEGRLKI 191 (200)
T ss_pred -H-cCCCccCcE-EE----EEccCCCCCCeEEEEeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCccee
Confidence 2 567889999 58 9999999999999999999999999988775 6999999998765443
No 2
>KOG3076|consensus
Probab=100.00 E-value=1.2e-34 Score=244.03 Aligned_cols=175 Identities=29% Similarity=0.354 Sum_probs=148.6
Q ss_pred CccEEEEEcCcchhHHHHHHHhccccCCC--CceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCH-HHHHHHHHHh
Q psy13615 10 RKRVAVLISGTGTNLKSLLEATSNRSDIM--RAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLIL-SNSLQVMQKV 86 (263)
Q Consensus 10 ~~riavl~SG~Gsnl~al~~~~~~~~~~l--~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~-~~~~~i~~~l 86 (263)
++|+++|+||+|||||+|+++ .+.+.+ .++|++|+||+.+|+|++||+++|||+.+++++.|.++ .++.++.+.+
T Consensus 6 r~rvavliSGtGsNlqaLid~--~r~~~l~~~a~VvlviSnk~~~~GL~rA~~~gIPt~vip~k~~a~R~~~d~eL~~~l 83 (206)
T KOG3076|consen 6 RARVAVLISGTGSNLQALIDA--TRDGSLGPNADVVLVISNKKGVYGLERAADAGIPTLVIPHKRFASREKYDNELAEVL 83 (206)
T ss_pred ceeEEEEEecCchhHHHHHHh--hcCCCcCCCceEEEEEeccccchhhhHHHHCCCCEEEeccccccccccCcHHHHHHH
Confidence 348999999999999999976 566666 78999999999999999999999999999999887665 5556666666
Q ss_pred ccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeE----Eee--cCCcCCccccccCCcEEEEecC-CCCCcccccee
Q psy13615 87 GAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVG----AVE--KASLLPKVKDVAAGDVVIALPS-SGIHSNGFSLV 159 (263)
Q Consensus 87 ~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~----~~~--~~~~in~hpsl~~g~~ii~Lp~-~G~~~~g~Sl~ 159 (263)
.+ +++|+++|||||+. +++ +++++|+||+| ||+ .|.|+.+.++
T Consensus 84 --~e-------------------~~~d~v~lAG~M~iLs~~fl~~~~~~iiNIHPaL--------lpaFkG~~a~k~Al- 133 (206)
T KOG3076|consen 84 --LE-------------------LGTDLVCLAGYMRILSGEFLSQLPKRIINIHPAL--------LPAFKGLHAIKQAL- 133 (206)
T ss_pred --HH-------------------hCCCEEEehhhHHHcCHHHHhhcccceEeccccc--------ccccCCchHHHHHH-
Confidence 56 89999999999983 222 46799999999 998 8988766443
Q ss_pred EEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHH-------HHHHHHHHHHhcCC
Q psy13615 160 LCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDT-------ILMRVIKKMIAEGT 226 (263)
Q Consensus 160 ~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~-------il~~~i~~~~~eg~ 226 (263)
+ .+++.+||| .| |++++.|||.+++|.++|+.+.|+.+++++| ++++++.+..++..
T Consensus 134 ----e-agv~~~Gct-vH----fV~EevD~G~iI~q~~v~V~~~Dt~esl~qrv~~aEH~~~~~Ai~~v~~~~~ 197 (206)
T KOG3076|consen 134 ----E-AGVKLSGCT-VH----FVIEEVDTGPIIAQMAVPVIPGDTLESLEQRVHDAEHKAFVEAIKAVCEGRV 197 (206)
T ss_pred ----H-hccccccce-EE----EehhhccCCCceEEEeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2 568899999 58 9999999999999999999999999998876 48888888876544
No 3
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=99.98 E-value=2.1e-33 Score=241.82 Aligned_cols=112 Identities=40% Similarity=0.622 Sum_probs=95.3
Q ss_pred CcEEEEecCCCCCccccceeEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHH
Q psy13615 140 GDVVIALPSSGIHSNGFSLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIK 219 (263)
Q Consensus 140 g~~ii~Lp~~G~~~~g~Sl~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~ 219 (263)
..+||+....| .++|+. +++||.++.++|++|||||++++|.||||||||+++|+|++++++.+++.++|+.|+++
T Consensus 81 ~~vvIEE~l~G---~E~S~~-a~~dG~~~~~lp~aqD~Kr~~dgd~GpnTGGMGa~sp~p~~~~~~~~~i~~~I~~pt~~ 156 (194)
T PF01071_consen 81 SKVVIEEFLEG---EEVSLF-ALTDGKNFVPLPPAQDHKRLFDGDTGPNTGGMGAYSPVPFITDELLEEIIEEILEPTLK 156 (194)
T ss_dssp SSEEEEE---S---EEEEEE-EEEESSEEEEEEEBEEEEEEETTTEEEEESESEEEESTTTS-HHHHHHHHHHTHHHHHH
T ss_pred CcEEEEeccCC---eEEEEE-EEEcCCeEEECcchhccccccCCCCCCCCCCccceeecccCCHHHHHHHHHHHHHHHHH
Confidence 35556655554 558876 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCCCC
Q psy13615 220 KMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGDP 263 (263)
Q Consensus 220 ~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~gdp 263 (263)
+|++||++|+|+||+|||.+. .|++|+|||+|||||
T Consensus 157 ~l~~eg~~y~GvLy~glMlt~--------~Gp~vlEfN~RfGDP 192 (194)
T PF01071_consen 157 GLKKEGIPYRGVLYAGLMLTE--------DGPKVLEFNVRFGDP 192 (194)
T ss_dssp HHHHTT---EEEEEEEEEEET--------TEEEEEEEESSGSTT
T ss_pred HHHhcCCCcceeeeeeeEEeC--------CCcEEEEEeCCCCCC
Confidence 999999999999999999554 445677999999999
No 4
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=99.97 E-value=5.2e-32 Score=253.31 Aligned_cols=210 Identities=32% Similarity=0.401 Sum_probs=148.6
Q ss_pred CceEEEEEecCCCChh-hHHHHHcCCCEEEeeCCCC---CCHHHHHHHHHHhccccCCCCceee-eccccccCCCCcC--
Q psy13615 39 RAEIVLVVSNKHNVEG-LNIARNAGIPTKVSTYKHT---LILSNSLQVMQKVGAKYSDIAPFSQ-DGGETAELPGLYQ-- 111 (263)
Q Consensus 39 ~~~iv~Visn~~~a~g-l~~A~~~gIP~~~v~~~~~---~~~~~~~~i~~~l~~~~~~~~~~~~-~gge~~~l~~~~~-- 111 (263)
..+++.|-...|...| .+.-++.|||+|-.+..+- .+++|.+++++..+... ..+..-. .....+.+...-.
T Consensus 63 ~idl~vVGPE~pL~~GvvD~l~~~Gi~vFGPsk~AA~lE~SK~faK~fm~k~~IPt-a~y~~f~~~e~a~ayi~~~g~pi 141 (428)
T COG0151 63 NVDLVVVGPEAPLVAGVVDALRAAGIPVFGPTKAAAQLEGSKAFAKDFMKKYGIPT-AEYEVFTDPEEAKAYIDEKGAPI 141 (428)
T ss_pred CCCEEEECCcHHHhhhhHHHHHHCCCceeCcCHHHHHHHhhHHHHHHHHHHcCCCc-ccccccCCHHHHHHHHHHcCCCE
Confidence 4688888888776655 7788999999998865431 45588888887665443 2221111 1111111222211
Q ss_pred -CCcEEEeeeeeEEeec----------CCcCCccccc-cC-CcEEEEecCCCCCccccceeEEEecCcceeecCCccccc
Q psy13615 112 -PGDYDLAGFAVGAVEK----------ASLLPKVKDV-AA-GDVVIALPSSGIHSNGFSLVLCFTDGKTVKVMPPSQDHK 178 (263)
Q Consensus 112 -~d~i~LAG~m~~~~~~----------~~~in~hpsl-~~-g~~ii~Lp~~G~~~~g~Sl~~ai~dg~~~~~~~~t~dhk 178 (263)
+.-.-||+ .+|+.-. ..++.. ..+ .. ..|||+.... +.++|++ +++||..+.+||++||||
T Consensus 142 VVKadGLaa-GKGV~V~~~~eeA~~a~~~~l~~-~~fg~~g~~VVIEEfL~---GeE~S~~-a~~DG~~v~p~p~aQDhK 215 (428)
T COG0151 142 VVKADGLAA-GKGVIVAMTLEEAEAAVDEMLEG-NAFGSAGARVVIEEFLD---GEEFSLQ-AFVDGKTVIPMPTAQDHK 215 (428)
T ss_pred EEecccccC-CCCeEEcCCHHHHHHHHHHHHhh-ccccCCCCcEEEEeccc---ceEEEEE-EEEcCCeEEECccccccc
Confidence 11112443 3443210 112211 111 12 2355655554 4569986 999999999999999999
Q ss_pred cccCCCCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCC
Q psy13615 179 RKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNP 258 (263)
Q Consensus 179 r~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~ 258 (263)
|+|++|.||||||||+|||.|+++++..+++.++|+.||+++|++||.+|+|+||+|||++..+||| +|||+
T Consensus 216 ra~dgD~GPNTGGMGaysp~P~~t~e~~~~~~~~Iv~ptv~gm~~EG~~f~GvLy~glMlt~~GPkV--------iEfN~ 287 (428)
T COG0151 216 RAYDGDTGPNTGGMGAYSPAPFITDEVVERAVEEIVEPTVEGMAKEGYPFRGVLYAGLMLTADGPKV--------IEFNA 287 (428)
T ss_pred cccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEeEEEEcCCCcEE--------EEEec
Confidence 9999999999999999999999999999999999999999999999999999999999988888766 59999
Q ss_pred CCCCC
Q psy13615 259 EEGDP 263 (263)
Q Consensus 259 ~~gdp 263 (263)
|||||
T Consensus 288 RFGDP 292 (428)
T COG0151 288 RFGDP 292 (428)
T ss_pred ccCCh
Confidence 99999
No 5
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=99.97 E-value=5.4e-32 Score=246.71 Aligned_cols=181 Identities=16% Similarity=0.156 Sum_probs=148.7
Q ss_pred eeeeecc-CCccEEEEEcCcchhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCHHHHH
Q psy13615 2 VVKTRMV-QRKRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLILSNSL 80 (263)
Q Consensus 2 ~~~~~m~-~~~riavl~SG~Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~~~~~ 80 (263)
.++.|.. .++||+||+||+||||++|+++ ++.+.++++|++|+||++++. ++|+++|||+++++++...+.+++.
T Consensus 84 ~~~i~~~~~~~kiavl~Sg~g~nl~al~~~--~~~~~l~~~i~~visn~~~~~--~~A~~~gIp~~~~~~~~~~~~~~~~ 159 (289)
T PRK13010 84 QWAIHPDGQRPKVVIMVSKFDHCLNDLLYR--WRMGELDMDIVGIISNHPDLQ--PLAVQHDIPFHHLPVTPDTKAQQEA 159 (289)
T ss_pred eEEEecCCCCeEEEEEEeCCCccHHHHHHH--HHCCCCCcEEEEEEECChhHH--HHHHHcCCCEEEeCCCcccccchHH
Confidence 3455555 4679999999999999999966 567788999999999999884 8999999999999887633336677
Q ss_pred HHHHHhccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEE----ee--cCCcCCccccccCCcEEEEecC-CCCCc
Q psy13615 81 QVMQKVGAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGA----VE--KASLLPKVKDVAAGDVVIALPS-SGIHS 153 (263)
Q Consensus 81 ~i~~~l~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~----~~--~~~~in~hpsl~~g~~ii~Lp~-~G~~~ 153 (263)
++++.+ ++ +++|+++|||||+.+ ++ +.++||+|||+ ||+ .|.+.
T Consensus 160 ~~~~~l--~~-------------------~~~Dlivlagym~il~~~~l~~~~~~iiNiHpSl--------LP~f~G~~~ 210 (289)
T PRK13010 160 QILDLI--ET-------------------SGAELVVLARYMQVLSDDLSRKLSGRAINIHHSF--------LPGFKGARP 210 (289)
T ss_pred HHHHHH--HH-------------------hCCCEEEEehhhhhCCHHHHhhccCCceeeCccc--------CCCCCCCCH
Confidence 778877 77 999999999999943 22 46899999999 998 56554
Q ss_pred cccceeEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHH-------HHHHHHHHHHhcCC
Q psy13615 154 NGFSLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDT-------ILMRVIKKMIAEGT 226 (263)
Q Consensus 154 ~g~Sl~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~-------il~~~i~~~~~eg~ 226 (263)
.. |++. +|++.+|+| .| ++++++|+|++++|.++|+.++|+.++++++ +|+++++++.++..
T Consensus 211 ~~----~ai~--~G~k~tG~T-vH----~v~~~lD~GpII~Q~~v~V~~~dt~e~L~~r~~~~E~~~l~~ai~~~~~~~~ 279 (289)
T PRK13010 211 YH----QAHA--RGVKLIGAT-AH----FVTDDLDEGPIIEQDVERVDHSYSPEDLVAKGRDVECLTLARAVKAFIEHRV 279 (289)
T ss_pred HH----HHHH--cCCCeEEEE-EE----EEcCCCCCCCceEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCE
Confidence 43 3444 457779999 48 9999999999999999999999998887765 69999999986654
No 6
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=99.97 E-value=1.1e-31 Score=243.77 Aligned_cols=173 Identities=21% Similarity=0.255 Sum_probs=145.0
Q ss_pred CccEEEEEcCcchhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCHHHHHHHHHHhccc
Q psy13615 10 RKRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLILSNSLQVMQKVGAK 89 (263)
Q Consensus 10 ~~riavl~SG~Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~~~~~~i~~~l~~~ 89 (263)
++||+||+||+||||++|+++ ++.+.++++|++|+||+++|++ +|+++|||+++++.+..++.+++.++++.+ +
T Consensus 84 ~~ki~vl~Sg~g~nl~~l~~~--~~~g~l~~~i~~visn~~~~~~--~A~~~gIp~~~~~~~~~~~~~~e~~~~~~l--~ 157 (280)
T TIGR00655 84 LKRVAILVSKEDHCLGDLLWR--WYSGELDAEIALVISNHEDLRS--LVERFGIPFHYIPATKDNRVEHEKRQLELL--K 157 (280)
T ss_pred CcEEEEEEcCCChhHHHHHHH--HHcCCCCcEEEEEEEcChhHHH--HHHHhCCCEEEcCCCCcchhhhHHHHHHHH--H
Confidence 579999999999999999976 6778889999999999999987 499999999999876533346777888877 6
Q ss_pred cCCCCceeeeccccccCCCCcCCCcEEEeeeeeEE----ee--cCCcCCccccccCCcEEEEecC-CCCCccccceeEEE
Q psy13615 90 YSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGA----VE--KASLLPKVKDVAAGDVVIALPS-SGIHSNGFSLVLCF 162 (263)
Q Consensus 90 ~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~----~~--~~~~in~hpsl~~g~~ii~Lp~-~G~~~~g~Sl~~ai 162 (263)
+ +++|+++|||||+.+ ++ +.+++|+|||+ ||+ .|.+.... ++
T Consensus 158 ~-------------------~~~Dlivlagym~il~~~~l~~~~~~iINiHpSL--------LP~f~G~~p~~~----ai 206 (280)
T TIGR00655 158 Q-------------------YQVDLVVLAKYMQILSPDFVKRYPNKIINIHHSF--------LPAFIGANPYQR----AY 206 (280)
T ss_pred H-------------------hCCCEEEEeCchhhCCHHHHhhccCCEEEecCCc--------CCCCCCcCHHHH----HH
Confidence 7 999999999999843 22 46899999999 998 66665433 33
Q ss_pred ecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHH-------HHHHHHHHHHhcCC
Q psy13615 163 TDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDT-------ILMRVIKKMIAEGT 226 (263)
Q Consensus 163 ~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~-------il~~~i~~~~~eg~ 226 (263)
. +|++.+|+| .| ++|++.|+|+++.|.++|+.++|+.+++.+| +|+++++.+.++..
T Consensus 207 ~--~G~k~tG~T-vH----~V~e~lD~GpII~Q~~v~I~~~dt~~~L~~ri~~~E~~~~~~ai~~~~~~~~ 270 (280)
T TIGR00655 207 E--RGVKIIGAT-AH----YVTEELDEGPIIEQDVVRVDHTDNVEDLIRAGRDIEKVVLARAVKLHLEDRV 270 (280)
T ss_pred H--cCCCeEEEE-EE----EEcCCCcCCCeEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCe
Confidence 3 457779999 58 9999999999999999999999999987765 58999999976543
No 7
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=99.97 E-value=8.1e-32 Score=234.79 Aligned_cols=180 Identities=22% Similarity=0.278 Sum_probs=146.2
Q ss_pred cEEEEEcCcchhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCH-HHHHHHHHHhcccc
Q psy13615 12 RVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLIL-SNSLQVMQKVGAKY 90 (263)
Q Consensus 12 riavl~SG~Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~-~~~~~i~~~l~~~~ 90 (263)
||+||+||+||||++|+++ ++.+.+++++++||||+++|+++++|+++|||++.+++.++..+ .+.+++++.+ ++
T Consensus 1 ki~vl~Sg~Gsn~~al~~~--~~~~~l~~~i~~visn~~~~~~~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~~l--~~ 76 (207)
T PLN02331 1 KLAVFVSGGGSNFRAIHDA--CLDGRVNGDVVVVVTNKPGCGGAEYARENGIPVLVYPKTKGEPDGLSPDELVDAL--RG 76 (207)
T ss_pred CEEEEEeCCChhHHHHHHH--HHcCCCCeEEEEEEEeCCCChHHHHHHHhCCCEEEeccccCCCcccchHHHHHHH--Hh
Confidence 6999999999999999976 56678899999999999999999999999999999988765333 4556677777 67
Q ss_pred CCCCceeeeccccccCCCCcCCCcEEEeeeeeEE----ee--cCCcCCccccccCCcEEEEecC-CCCCccccceeEEEe
Q psy13615 91 SDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGA----VE--KASLLPKVKDVAAGDVVIALPS-SGIHSNGFSLVLCFT 163 (263)
Q Consensus 91 ~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~----~~--~~~~in~hpsl~~g~~ii~Lp~-~G~~~~g~Sl~~ai~ 163 (263)
+++|++++||||+.+ ++ +.+++|+|||+ ||. .|...++..+++++.
T Consensus 77 -------------------~~~Dliv~agy~~il~~~~l~~~~~~~iNiHpSL--------LP~yrG~g~~~~~v~~a~i 129 (207)
T PLN02331 77 -------------------AGVDFVLLAGYLKLIPVELVRAYPRSILNIHPAL--------LPAFGGKGYYGIKVHKAVI 129 (207)
T ss_pred -------------------cCCCEEEEeCcchhCCHHHHhhCCCCEEEEeCcc--------ccCCCCCCcccchHHHHHH
Confidence 899999999999843 22 35789999999 998 454444444555545
Q ss_pred cCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHH-------HHHHHHHHHHhcCCCe
Q psy13615 164 DGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDT-------ILMRVIKKMIAEGTPF 228 (263)
Q Consensus 164 dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~-------il~~~i~~~~~eg~~~ 228 (263)
. ++.+.+|+| .| ++|++.|||++++|.++|+.++|+.+++.+| +|+++++.+.+..+.+
T Consensus 130 ~-~g~~~tG~T-vh----~v~~~~D~G~Ii~Q~~~~I~~~dt~~~L~~r~~~~e~~ll~~al~~l~~~~~~~ 195 (207)
T PLN02331 130 A-SGARYSGPT-VH----FVDEHYDTGRILAQRVVPVLATDTPEELAARVLHEEHQLYVEVVAALCEERIVW 195 (207)
T ss_pred H-cCCCeEEEE-EE----EECCCCCCCCeEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEe
Confidence 3 456679999 47 9999999999999999999999999988765 5888888886554433
No 8
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=99.97 E-value=2.2e-31 Score=242.66 Aligned_cols=173 Identities=20% Similarity=0.279 Sum_probs=144.3
Q ss_pred CccEEEEEcCcchhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCHHHHHHHHHHhccc
Q psy13615 10 RKRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLILSNSLQVMQKVGAK 89 (263)
Q Consensus 10 ~~riavl~SG~Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~~~~~~i~~~l~~~ 89 (263)
++||+||+||+||||++|+++ ++.+.++++|++|+||+++++++ |+++|||++.++++...+.++..++.+.+ +
T Consensus 89 ~~ri~vl~Sg~gsnl~al~~~--~~~~~~~~~i~~visn~~~~~~l--A~~~gIp~~~~~~~~~~~~~~~~~~~~~l--~ 162 (286)
T PRK06027 89 RKRVVILVSKEDHCLGDLLWR--WRSGELPVEIAAVISNHDDLRSL--VERFGIPFHHVPVTKETKAEAEARLLELI--D 162 (286)
T ss_pred CcEEEEEEcCCCCCHHHHHHH--HHcCCCCcEEEEEEEcChhHHHH--HHHhCCCEEEeccCccccchhHHHHHHHH--H
Confidence 679999999999999999976 56678899999999999999887 99999999999877543446777777877 6
Q ss_pred cCCCCceeeeccccccCCCCcCCCcEEEeeeeeEE----ee--cCCcCCccccccCCcEEEEecC-CCCCccccceeEEE
Q psy13615 90 YSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGA----VE--KASLLPKVKDVAAGDVVIALPS-SGIHSNGFSLVLCF 162 (263)
Q Consensus 90 ~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~----~~--~~~~in~hpsl~~g~~ii~Lp~-~G~~~~g~Sl~~ai 162 (263)
+ +++|+++|||||+.+ ++ +.+++|+|||+ ||+ .|.+... |++
T Consensus 163 ~-------------------~~~Dlivlagy~~il~~~~l~~~~~~iiNiHpSL--------LP~yrG~~~~~----~ai 211 (286)
T PRK06027 163 E-------------------YQPDLVVLARYMQILSPDFVARFPGRIINIHHSF--------LPAFKGAKPYH----QAY 211 (286)
T ss_pred H-------------------hCCCEEEEecchhhcCHHHHhhccCCceecCccc--------CCCCCCCCHHH----HHH
Confidence 7 899999999999943 22 46899999999 998 6655443 344
Q ss_pred ecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHH-------HHHHHHHHHHhcCC
Q psy13615 163 TDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDT-------ILMRVIKKMIAEGT 226 (263)
Q Consensus 163 ~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~-------il~~~i~~~~~eg~ 226 (263)
. +|++.+|+| .| ++|+++|||+|++|.++|+.++|+.+++.+| +|+++++.+.++..
T Consensus 212 ~--~G~~~tG~T-iH----~v~~~~D~G~Ii~Q~~v~i~~~dt~~~L~~ri~~~E~~~~~~ai~~~~~~~~ 275 (286)
T PRK06027 212 E--RGVKLIGAT-AH----YVTADLDEGPIIEQDVIRVDHRDTAEDLVRAGRDVEKQVLARAVRWHLEDRV 275 (286)
T ss_pred H--CCCCeEEEE-EE----EEcCCCcCCCcEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCE
Confidence 4 457779999 58 9999999999999999999999999887765 58999999976543
No 9
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=99.97 E-value=1.3e-30 Score=237.49 Aligned_cols=180 Identities=19% Similarity=0.169 Sum_probs=146.6
Q ss_pred eeeecc-CCccEEEEEcCcchhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCHHHHHH
Q psy13615 3 VKTRMV-QRKRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLILSNSLQ 81 (263)
Q Consensus 3 ~~~~m~-~~~riavl~SG~Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~~~~~~ 81 (263)
+..+.. .++||+||+||+||||++|+++ ++.+.++++|++|+||+++++++ |+++|||++++++....+.+++.+
T Consensus 81 i~i~~~~~~~ri~vl~Sg~g~nl~al~~~--~~~~~~~~~i~~visn~~~~~~l--A~~~gIp~~~~~~~~~~~~~~~~~ 156 (286)
T PRK13011 81 WELHDPAARPKVLIMVSKFDHCLNDLLYR--WRIGELPMDIVGVVSNHPDLEPL--AAWHGIPFHHFPITPDTKPQQEAQ 156 (286)
T ss_pred EEEeecccCceEEEEEcCCcccHHHHHHH--HHcCCCCcEEEEEEECCccHHHH--HHHhCCCEEEeCCCcCchhhhHHH
Confidence 444544 4679999999999999999976 56678889999999999999887 999999999998755222356677
Q ss_pred HHHHhccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEE----ee--cCCcCCccccccCCcEEEEecC-CCCCcc
Q psy13615 82 VMQKVGAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGA----VE--KASLLPKVKDVAAGDVVIALPS-SGIHSN 154 (263)
Q Consensus 82 i~~~l~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~----~~--~~~~in~hpsl~~g~~ii~Lp~-~G~~~~ 154 (263)
+++.+ +. +++|+++|||||+.+ ++ +.+++|+|||| ||+ .|.+..
T Consensus 157 ~~~~l--~~-------------------~~~Dlivlagy~~il~~~~l~~~~~~iiNiHpSL--------LP~~rG~~~~ 207 (286)
T PRK13011 157 VLDVV--EE-------------------SGAELVVLARYMQVLSPELCRKLAGRAINIHHSF--------LPGFKGAKPY 207 (286)
T ss_pred HHHHH--HH-------------------hCcCEEEEeChhhhCCHHHHhhccCCeEEecccc--------CCCCCCCcHH
Confidence 77777 67 899999999999943 22 46899999999 998 665554
Q ss_pred ccceeEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHH-------HHHHHHHHHHhcCC
Q psy13615 155 GFSLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDT-------ILMRVIKKMIAEGT 226 (263)
Q Consensus 155 g~Sl~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~-------il~~~i~~~~~eg~ 226 (263)
. |++. +|++.+|+| .| ++|+++|+|++++|.++|+.++|+.+++++| +|+++++.+.+...
T Consensus 208 ~----~ai~--~G~~~tG~T-vH----~v~~~~D~G~Ii~Q~~v~I~~~dt~~~L~~r~~~~E~~~~~~ai~~~~~~~~ 275 (286)
T PRK13011 208 H----QAYE--RGVKLIGAT-AH----YVTDDLDEGPIIEQDVERVDHAYSPEDLVAKGRDVECLTLARAVKAHIERRV 275 (286)
T ss_pred H----HHHH--CCCCeEEEE-EE----EEcCCCcCCCcEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCe
Confidence 3 3444 457779999 47 9999999999999999999999999987775 58999999976543
No 10
>KOG0237|consensus
Probab=99.96 E-value=5.9e-30 Score=245.06 Aligned_cols=114 Identities=37% Similarity=0.601 Sum_probs=101.8
Q ss_pred CCcEEEEecCCCCCccccceeEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHH
Q psy13615 139 AGDVVIALPSSGIHSNGFSLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVI 218 (263)
Q Consensus 139 ~g~~ii~Lp~~G~~~~g~Sl~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i 218 (263)
+|..||..+. +++.+.|+. +++||.++..||++|||||++++|.||||||||+|+|.|+.++++++.+.+.|++||+
T Consensus 185 AG~tvViEE~--LEGeEvS~l-aftDG~s~~~mp~aQDHKRl~dgD~GpNTGgmGaY~paPv~s~~ll~~v~~~I~~~Tv 261 (788)
T KOG0237|consen 185 AGKTVVIEEL--LEGEEVSFL-AFTDGYSVRPLPPAQDHKRLGDGDTGPNTGGMGAYAPAPVASPKLLDTVQSTIIEPTV 261 (788)
T ss_pred ccceEehhhh--cCcceEEEE-EEecCcccccCCcccchhhhcCCCCCCCCCCccccccCCccCHHHHHHHHHHHhhHhh
Confidence 5666654333 345668875 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCCCC
Q psy13615 219 KKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGDP 263 (263)
Q Consensus 219 ~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~gdp 263 (263)
++|++||+||.|+||+|||.+..+| ||+|||||||||
T Consensus 262 ~Gm~~eg~~y~GVLfaGlMl~k~~P--------~vLEfN~RFGDP 298 (788)
T KOG0237|consen 262 DGMAEEGIPYVGVLFAGLMLTKDGP--------KVLEFNVRFGDP 298 (788)
T ss_pred hHHHhcCCceeeEEeeeeEEecCCc--------cEEEEecccCCc
Confidence 9999999999999999999665555 677999999999
No 11
>PLN02828 formyltetrahydrofolate deformylase
Probab=99.96 E-value=2.3e-29 Score=226.60 Aligned_cols=171 Identities=18% Similarity=0.183 Sum_probs=138.8
Q ss_pred CCccEEEEEcCcchhHHHHHHHhccccCCCCceEEEEEecC---CCChhhHHHHHcCCCEEEeeCCCCCCHHHHHHHHHH
Q psy13615 9 QRKRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNK---HNVEGLNIARNAGIPTKVSTYKHTLILSNSLQVMQK 85 (263)
Q Consensus 9 ~~~riavl~SG~Gsnl~al~~~~~~~~~~l~~~iv~Visn~---~~a~gl~~A~~~gIP~~~v~~~~~~~~~~~~~i~~~ 85 (263)
.++||+||+||+||||++|+++ ++.++++++|++|+||+ ++++++++|+++|||+++++.+.+.+++ +++++.
T Consensus 69 ~~~riavlvSg~g~nl~~ll~~--~~~g~l~~eI~~ViSn~~~~~~a~~~~~A~~~gIP~~~~~~~~~~~~e--~~~~~~ 144 (268)
T PLN02828 69 PKYKIAVLASKQDHCLIDLLHR--WQDGRLPVDITCVISNHERGPNTHVMRFLERHGIPYHYLPTTKENKRE--DEILEL 144 (268)
T ss_pred CCcEEEEEEcCCChhHHHHHHh--hhcCCCCceEEEEEeCCCCCCCchHHHHHHHcCCCEEEeCCCCCCCHH--HHHHHH
Confidence 4679999999999999999965 67788999999999998 5679999999999999999887655542 345554
Q ss_pred hccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEE----ee--cCCcCCccccccCCcEEEEecC-CCCCccccce
Q psy13615 86 VGAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGA----VE--KASLLPKVKDVAAGDVVIALPS-SGIHSNGFSL 158 (263)
Q Consensus 86 l~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~----~~--~~~~in~hpsl~~g~~ii~Lp~-~G~~~~g~Sl 158 (263)
+ -++|+++|||||+.+ ++ +.++||+|||+ ||+ .|.+.+.
T Consensus 145 l-----------------------~~~DliVLAgym~IL~~~~l~~~~~riINIHpSl--------LP~f~Ga~p~~--- 190 (268)
T PLN02828 145 V-----------------------KGTDFLVLARYMQILSGNFLKGYGKDIINIHHGL--------LPSFKGGNPSK--- 190 (268)
T ss_pred H-----------------------hcCCEEEEeeehHhCCHHHHhhccCCEEEecCcc--------CCCCCCCcHHH---
Confidence 4 248999999999943 22 46899999999 998 5655443
Q ss_pred eEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHH-------HHHHHHHHHHhcC
Q psy13615 159 VLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDT-------ILMRVIKKMIAEG 225 (263)
Q Consensus 159 ~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~-------il~~~i~~~~~eg 225 (263)
+++. .|++.+|+| .| ++++++|+|+|+.|..+|+.++|+.+++.++ +|+++++.+.+..
T Consensus 191 -~Ai~--~Gvk~tG~T-vH----~V~~~lD~GpII~Q~~v~V~~~dt~~~L~~r~~~~E~~~l~~av~~~~~~~ 256 (268)
T PLN02828 191 -QAFD--AGVKLIGAT-SH----FVTEELDAGPIIEQMVERVSHRDNLRSFVQKSENLEKQCLAKAIKSYCELR 256 (268)
T ss_pred -HHHH--cCCCeEEEE-EE----EEcCCCCCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3433 467889999 47 9999999999999999999988888877654 6889999886543
No 12
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=99.95 E-value=5.8e-28 Score=208.19 Aligned_cols=171 Identities=29% Similarity=0.378 Sum_probs=140.1
Q ss_pred ccEEEEEcCcchhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCH-HHHHHHHHHhccc
Q psy13615 11 KRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLIL-SNSLQVMQKVGAK 89 (263)
Q Consensus 11 ~riavl~SG~Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~-~~~~~i~~~l~~~ 89 (263)
+||+||+||+|||+++++++ +.++.+.++|++|++|+++|+++++|+++|||++.+++..+.++ ++..++.+.+ +
T Consensus 1 ~riail~sg~gs~~~~ll~~--~~~~~l~~~I~~vi~~~~~~~~~~~A~~~gip~~~~~~~~~~~~~~~~~~~~~~l--~ 76 (190)
T TIGR00639 1 KRIVVLISGNGSNLQAIIDA--CKEGKIPASVVLVISNKPDAYGLERAAQAGIPTFVLSLKDFPSREAFDQAIIEEL--R 76 (190)
T ss_pred CeEEEEEcCCChhHHHHHHH--HHcCCCCceEEEEEECCccchHHHHHHHcCCCEEEECccccCchhhhhHHHHHHH--H
Confidence 58999999999999999976 45566778999999999999999999999999999887776544 5667777777 6
Q ss_pred cCCCCceeeeccccccCCCCcCCCcEEEeeeeeEE----ee--cCCcCCccccccCCcEEEEecC-CCCCccccceeEEE
Q psy13615 90 YSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGA----VE--KASLLPKVKDVAAGDVVIALPS-SGIHSNGFSLVLCF 162 (263)
Q Consensus 90 ~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~----~~--~~~~in~hpsl~~g~~ii~Lp~-~G~~~~g~Sl~~ai 162 (263)
+ +++|+++++|||+.+ ++ +.+++|+|||+ ||. .|.+.. +|++
T Consensus 77 ~-------------------~~~D~iv~~~~~~il~~~~l~~~~~~~iNiHpsl--------LP~yrG~~p~----~~ai 125 (190)
T TIGR00639 77 A-------------------HEVDLVVLAGFMRILGPTFLSRFAGRILNIHPSL--------LPAFPGLHAV----EQAL 125 (190)
T ss_pred h-------------------cCCCEEEEeCcchhCCHHHHhhccCCEEEEeCCc--------ccCCCCccHH----HHHH
Confidence 6 899999999999843 22 35689999999 998 453322 4566
Q ss_pred ecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHH-------HHHHHHHHHHh
Q psy13615 163 TDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDT-------ILMRVIKKMIA 223 (263)
Q Consensus 163 ~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~-------il~~~i~~~~~ 223 (263)
.+| .+.+|+| .| +.|+|.|||+|++|.++|+.++|+.+++.++ ++.++++.+.+
T Consensus 126 ~~g--~~~tGvT-ih----~v~~~~D~G~Ii~q~~~~i~~~dt~~~L~~k~~~~~~~l~~~~l~~~~~ 186 (190)
T TIGR00639 126 EAG--VKESGCT-VH----YVDEEVDTGPIIAQAKVPILPEDTEETLEQRIHKQEHRIYPLAIAWFAQ 186 (190)
T ss_pred HcC--CCeEEEE-EE----EEcCCCcCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 665 5569999 47 9999999999999999999999999888765 47777777754
No 13
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=99.94 E-value=4.2e-27 Score=204.39 Aligned_cols=177 Identities=29% Similarity=0.393 Sum_probs=143.0
Q ss_pred CccEEEEEcCcchhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCH-HHHHHHHHHhcc
Q psy13615 10 RKRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLIL-SNSLQVMQKVGA 88 (263)
Q Consensus 10 ~~riavl~SG~Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~-~~~~~i~~~l~~ 88 (263)
|+||+||+||+|||+++++++ ...+.+.++|++|+||+++|.+.++|+++|||++.+++.++.++ ++..++.+.+
T Consensus 1 m~ki~vl~sg~gs~~~~ll~~--~~~~~~~~~I~~vvs~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~~~~~l-- 76 (200)
T PRK05647 1 MKRIVVLASGNGSNLQAIIDA--CAAGQLPAEIVAVISDRPDAYGLERAEAAGIPTFVLDHKDFPSREAFDAALVEAL-- 76 (200)
T ss_pred CceEEEEEcCCChhHHHHHHH--HHcCCCCcEEEEEEecCccchHHHHHHHcCCCEEEECccccCchhHhHHHHHHHH--
Confidence 368999999999999999976 34456678999999999999999999999999999887766443 5666777767
Q ss_pred ccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEE----ee--cCCcCCccccccCCcEEEEecC-CCCCccccceeEE
Q psy13615 89 KYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGA----VE--KASLLPKVKDVAAGDVVIALPS-SGIHSNGFSLVLC 161 (263)
Q Consensus 89 ~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~----~~--~~~~in~hpsl~~g~~ii~Lp~-~G~~~~g~Sl~~a 161 (263)
+. +++|+++++||+..+ ++ +..++|+|||+ ||. .|.+.. +|+
T Consensus 77 ~~-------------------~~~D~iv~~~~~~ii~~~~l~~~~~~~iNiHpsl--------LP~yrG~~p~----~~a 125 (200)
T PRK05647 77 DA-------------------YQPDLVVLAGFMRILGPTFVSAYEGRIINIHPSL--------LPSFPGLHTH----EQA 125 (200)
T ss_pred HH-------------------hCcCEEEhHHhhhhCCHHHHhhccCCEEEEeCcc--------ccCCCCccHH----HHH
Confidence 66 899999999999732 22 34689999999 998 443322 456
Q ss_pred EecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHH-------HHHHHHHHHHhcCCCe
Q psy13615 162 FTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDT-------ILMRVIKKMIAEGTPF 228 (263)
Q Consensus 162 i~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~-------il~~~i~~~~~eg~~~ 228 (263)
+.+| ...+|+| .| +.|++.|||++..|..+|+.++|+.+++.++ +++++++.+.+....+
T Consensus 126 i~~g--~~~tG~T-vh----~~~~~~D~G~Ii~q~~~~i~~~dt~~~L~~kl~~~~~~ll~~~i~~l~~g~~~~ 192 (200)
T PRK05647 126 LEAG--VKVHGCT-VH----FVDEGLDTGPIIAQAAVPVLAGDTEESLAARVLEQEHRLYPLVVKWFAEGRLKL 192 (200)
T ss_pred HHcC--CCeEEEE-EE----EEcCCCcCCCeEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEe
Confidence 6665 4558999 47 9999999999999999999999999887765 5788888887665544
No 14
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=99.92 E-value=7.3e-26 Score=206.82 Aligned_cols=139 Identities=44% Similarity=0.667 Sum_probs=128.5
Q ss_pred EEEEcCc---chhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCH--HHHHHHHHHh--
Q psy13615 14 AVLISGT---GTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLIL--SNSLQVMQKV-- 86 (263)
Q Consensus 14 avl~SG~---Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~--~~~~~i~~~l-- 86 (263)
.+|+|++ ||++....+. .+++.+++|++++++|+.-|.|.+ |.+++||.+.++. +..+++++++
T Consensus 55 p~Lv~~tDGVGTKl~~A~~~--~k~dTiGID~VAM~VNDlv~~GAe-------Pl~flDY~A~gk~~~~~~~~iv~Giae 125 (345)
T COG0150 55 PVLVSGTDGVGTKLLLAEDA--GKHDTIGIDLVAMCVNDLVVQGAE-------PLFFLDYLATGKLDPEVAAQIVKGIAE 125 (345)
T ss_pred ceEEecCCCchHHHHHHHHh--CCccccccchheeecchhhhcCcc-------hHHHHhhhhcCCCCHHHHHHHHHHHHH
Confidence 7888888 9999988744 677889999999999999999999 9999999998775 8889999999
Q ss_pred ccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEEeecCCcCCccccccCCcEEEEecCCCCCccccceeEEEecC
Q psy13615 87 GAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKDVAAGDVVIALPSSGIHSNGFSLVLCFTDG 165 (263)
Q Consensus 87 ~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~~~~~~~in~hpsl~~g~~ii~Lp~~G~~~~g~Sl~~ai~dg 165 (263)
+|++ ++|+|+|||||+||++|..+.++||||+.++++++++|+. ..+++||+||+|||+|+|+||||+.|+++.-
T Consensus 126 Gc~~---ag~aLvGGETAeMPg~y~~g~yDlaG~~vGvvek~~ii~g-~~i~~GDviigl~SSG~HSNGySLvRKi~~~ 200 (345)
T COG0150 126 GCKQ---AGCALVGGETAEMPGMYRGGDYDLAGFAVGVVEKDEIIDG-SKVKEGDVIIGLASSGLHSNGYSLVRKIIEE 200 (345)
T ss_pred HHHH---hCCEEeccccccCCCcccCCceeeeeeEEEEEEccccccc-cccCCCCEEEEecCCCcCCCchHHHHHHHHh
Confidence 9999 9999999999999999999999999999999999999998 7899999999999999999999998887753
No 15
>KOG0237|consensus
Probab=99.89 E-value=5.4e-24 Score=204.31 Aligned_cols=182 Identities=40% Similarity=0.579 Sum_probs=151.7
Q ss_pred CccEEEEEcCc---chhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCH--HHHHHHHH
Q psy13615 10 RKRVAVLISGT---GTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLIL--SNSLQVMQ 84 (263)
Q Consensus 10 ~~riavl~SG~---Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~--~~~~~i~~ 84 (263)
..|-..|+||+ ||++.... .++..+.++.|++++..|+.-+.|.+ |.+++||.++++. +..+++++
T Consensus 485 g~~d~~Lv~~tdGVGtKl~iA~--~~~~hdtvG~DlvAm~vNDii~~gAe-------Pl~FLDYfa~gkLd~~va~~~v~ 555 (788)
T KOG0237|consen 485 GFKDPLLVSGTDGVGTKLKIAQ--ETNIHDTVGIDLVAMNVNDIIVQGAE-------PLFFLDYFATGKLDVSVAEQVVK 555 (788)
T ss_pred CCCCceEEEeccCccceeehhh--hhCcccccceeeeeeehhhHhhcCCc-------ceeehhhhhhcccchHHHHHHHH
Confidence 44566788887 99999776 45677889999999999999999999 9999999999886 77888888
Q ss_pred Hh--ccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEEeecCCcCCccccccCCcEEEEecCCCCCccccceeEEE
Q psy13615 85 KV--GAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKDVAAGDVVIALPSSGIHSNGFSLVLCF 162 (263)
Q Consensus 85 ~l--~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~~~~~~~in~hpsl~~g~~ii~Lp~~G~~~~g~Sl~~ai 162 (263)
++ +|++ ++|+|+||||||||++|.+..|+||||..+++++..+++...++.+||++++|||+|+|+||||+.|++
T Consensus 556 gia~gC~q---a~CaLvGGETaEMP~~Y~~g~yDlaG~Avga~e~~~iLp~~~ei~~GDVllGL~SsGvHSNGfSLvrki 632 (788)
T KOG0237|consen 556 GIAEGCRQ---AGCALVGGETAEMPGMYAPGEYDLAGFAVGAVERTDILPKLNEIVAGDVLLGLPSSGVHSNGFSLVRKI 632 (788)
T ss_pred HHHHHHhh---ccceeeccccccCCCCCCCCccccccceEeeeeccCcCCCccccccCcEEEeccccccccCcHHHHHHH
Confidence 88 9999 999999999999999999999999999999999888988867799999999999999999999999999
Q ss_pred ecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHH
Q psy13615 163 TDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHD 211 (263)
Q Consensus 163 ~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~ 211 (263)
+..+++.+.-++. -|.+- |=|-....|..+|...++.-|++
T Consensus 633 l~~~~l~~~~~~P-------~~~~~-tlGd~LL~pTkiYvk~ll~~i~~ 673 (788)
T KOG0237|consen 633 LARSGLSYKDPLP-------WDSSK-TLGDELLAPTKIYVKQLLPLIRK 673 (788)
T ss_pred HHhcCCccCCCCC-------CCccc-chhhhhccccEEehhhhHHHHHh
Confidence 8877776665553 11111 44444566777776666665553
No 16
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=99.87 E-value=2.4e-22 Score=177.97 Aligned_cols=172 Identities=20% Similarity=0.228 Sum_probs=140.3
Q ss_pred CccEEEEEcCcchhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCHHHHHHHHHHhccc
Q psy13615 10 RKRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLILSNSLQVMQKVGAK 89 (263)
Q Consensus 10 ~~riavl~SG~Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~~~~~~i~~~l~~~ 89 (263)
++||++|+|..++||..|+ .+|+.|+++++|++||||+++...+ |+++|||+++++.....+.+.++++++.+ .
T Consensus 90 ~~ri~i~VSK~~HCL~DLL--~r~~~g~L~~eI~~VIsNH~dl~~~--v~~~~IPfhhip~~~~~k~e~E~~~~~ll--~ 163 (287)
T COG0788 90 RKRIAILVSKEDHCLGDLL--YRWRIGELPAEIVAVISNHDDLRPL--VERFDIPFHHIPVTKENKAEAEARLLELL--E 163 (287)
T ss_pred CceEEEEEechHHHHHHHH--HHHhcCCcCCceEEEEcCCHHHHHH--HHHcCCCeeeccCCCCcchHHHHHHHHHH--H
Confidence 7799999999999999999 6678899999999999999988754 89999999999876655668888888888 6
Q ss_pred cCCCCceeeeccccccCCCCcCCCcEEEeeeeeEEe----e--cCCcCCccccccCCcEEEEecC-CCCCccccceeEEE
Q psy13615 90 YSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAV----E--KASLLPKVKDVAAGDVVIALPS-SGIHSNGFSLVLCF 162 (263)
Q Consensus 90 ~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~~----~--~~~~in~hpsl~~g~~ii~Lp~-~G~~~~g~Sl~~ai 162 (263)
+ |++|+++||-||+.+. + .+++||||+|+ ||+ .|.. +++++
T Consensus 164 ~-------------------~~~DlvVLARYMqILS~d~~~~~~g~iINIHHSF--------LPaF~GA~-----PY~QA 211 (287)
T COG0788 164 E-------------------YGADLVVLARYMQILSPDFVERFPGKIINIHHSF--------LPAFIGAN-----PYHQA 211 (287)
T ss_pred H-------------------hCCCEEeehhhHhhCCHHHHHhccCcEEEecccc--------cccCCCCC-----hHHHH
Confidence 7 9999999999999432 2 47999999999 998 6644 32233
Q ss_pred ecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHH-------HHHHHHHHHHHHHHhcC
Q psy13615 163 TDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKE-------IHDTILMRVIKKMIAEG 225 (263)
Q Consensus 163 ~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~-------i~~~il~~~i~~~~~eg 225 (263)
.. .|+++.|.|. | ++...+|.|||+.|.-+++-..++.+. ++..+|.+++++-.+..
T Consensus 212 ~e-RGVKlIGATA-H----YVT~dLDeGPIIeQdv~rV~H~~s~ed~~~~GrDvE~~VLARAv~~hle~R 275 (287)
T COG0788 212 YE-RGVKLIGATA-H----YVTADLDEGPIIEQDVIRVDHAYSVEDLVRAGRDVEKLVLARAVKAHLEDR 275 (287)
T ss_pred Hh-cCCeEeeeee-e----eccCCCCCCCceeeeeeecCccCCHHHHHHhCCcHHHHHHHHHHHHHhcce
Confidence 43 7799999995 7 999999999999998877744444443 55567888888876544
No 17
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=99.86 E-value=2.6e-22 Score=171.44 Aligned_cols=170 Identities=23% Similarity=0.281 Sum_probs=132.4
Q ss_pred ccEEEEEcCcchhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCH-HHHHHHHHHhccc
Q psy13615 11 KRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLIL-SNSLQVMQKVGAK 89 (263)
Q Consensus 11 ~riavl~SG~Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~-~~~~~i~~~l~~~ 89 (263)
+||+||+||+||+++.++++. +.....+++++|+||++...+..+|.+.++|...++...+... ....++.+.+ +
T Consensus 1 mrI~~~~Sg~~~~~~~~l~~l--~~~~~~~~iv~Vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~ 76 (181)
T PF00551_consen 1 MRIVFFGSGSGSFLKALLEAL--KARGHNVEIVLVITNPDKPRGRSRAIKNGIPAQVADEKNFQPRSENDEELLELL--E 76 (181)
T ss_dssp EEEEEEESSSSHHHHHHHHHH--HTTSSEEEEEEEEESSTTTHHHHHHHHTTHHEEEHHGGGSSSHHHHHHHHHHHH--H
T ss_pred CEEEEEEcCCCHHHHHHHHHH--HhCCCCceEEEEeccccccccccccccCCCCEEeccccCCCchHhhhhHHHHHH--H
Confidence 589999999999999999764 3344447899999999999999999999999999998887665 6777778877 6
Q ss_pred cCCCCceeeeccccccCCCCcCCCcEEEeeeeeEE----ee--cCCcCCccccccCCcEEEEecCCCCCccccce-eEEE
Q psy13615 90 YSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGA----VE--KASLLPKVKDVAAGDVVIALPSSGIHSNGFSL-VLCF 162 (263)
Q Consensus 90 ~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~----~~--~~~~in~hpsl~~g~~ii~Lp~~G~~~~g~Sl-~~ai 162 (263)
+ +++|+++++||++.+ ++ +..++|+|||+ ||. ++|.++ .|++
T Consensus 77 ~-------------------~~~Dl~v~~~~~~il~~~~l~~~~~~~iNiHpsl--------LP~----yrG~~p~~~ai 125 (181)
T PF00551_consen 77 S-------------------LNPDLIVVAGYGRILPKEFLSIPPYGIINIHPSL--------LPK----YRGASPIQWAI 125 (181)
T ss_dssp H-------------------TT-SEEEESS-SS---HHHHHHSTTSEEEEESSS--------TTT----TBSSTHHHHHH
T ss_pred h-------------------hccceeehhhhHHHhhhhhhhcccccEEEEeecC--------Ccc----CCCcchhhhhh
Confidence 7 899999999999843 23 34679999999 998 344555 5567
Q ss_pred ecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHHHHH
Q psy13615 163 TDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKKMI 222 (263)
Q Consensus 163 ~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~~~~ 222 (263)
.+| ...+|+| .| +.+++.|+|++..|..+|+.++|+.+++.+|+.....+.|.
T Consensus 126 ~~g--~~~~G~T-vh----~~~~~~D~G~Ii~q~~~~i~~~dt~~~l~~r~~~~~~~~l~ 178 (181)
T PF00551_consen 126 LNG--EKETGVT-VH----FMDEGLDAGPIIAQKKFPIEPDDTAESLYERLAEAEAELLV 178 (181)
T ss_dssp HHT--SSEEEEE-EE----EE-SSTTTSEEEEEEEEE--TT--HHHHHHHHHHHHHHHHH
T ss_pred cCC--cceeeeE-EE----EecccCcCCCeEEEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Confidence 766 4558999 47 89999999999999999999999999999988766555543
No 18
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=99.83 E-value=2.5e-20 Score=178.61 Aligned_cols=207 Identities=28% Similarity=0.417 Sum_probs=136.1
Q ss_pred ceEEEEEecCCCChh-hHHHHHcCCCEEEeeCCC---CCCHHHHHHHHHHhccccCCCCceeeecc-ccc-------cCC
Q psy13615 40 AEIVLVVSNKHNVEG-LNIARNAGIPTKVSTYKH---TLILSNSLQVMQKVGAKYSDIAPFSQDGG-ETA-------ELP 107 (263)
Q Consensus 40 ~~iv~Visn~~~a~g-l~~A~~~gIP~~~v~~~~---~~~~~~~~~i~~~l~~~~~~~~~~~~~gg-e~~-------~l~ 107 (263)
.|.+.+-..++...+ .+.++++|||++-.+... ..++.+.+++++..++.. +.....-. +.+ .+|
T Consensus 69 iD~Vv~g~E~~l~~glad~~~~~Gip~~Gp~~~aa~le~dK~~~K~~l~~~gIpt---~~~~~~~~~~ea~~~~~~~~~P 145 (426)
T PRK13789 69 FDLIVVGPEDPLVAGFADWAAELGIPCFGPDSYCAQVEGSKHFAKSLMKEAKIPT---ASYKTFTEYSSSLSYLESEMLP 145 (426)
T ss_pred CCEEEECCchHHHHHHHHHHHHcCCCcCCCHHHHHHHHcCHHHHHHHHHHcCCCC---CCeEeeCCHHHHHHHHHhcCCC
Confidence 455554444544444 366788888876554332 134567777777664444 22222111 000 123
Q ss_pred CCcCCCcEEEeeeeeE--Eee-cCCc---CCc---cccc-cCC-cEEEEecCCCCCccccceeEEEecCcceeecCCccc
Q psy13615 108 GLYQPGDYDLAGFAVG--AVE-KASL---LPK---VKDV-AAG-DVVIALPSSGIHSNGFSLVLCFTDGKTVKVMPPSQD 176 (263)
Q Consensus 108 ~~~~~d~i~LAG~m~~--~~~-~~~~---in~---hpsl-~~g-~~ii~Lp~~G~~~~g~Sl~~ai~dg~~~~~~~~t~d 176 (263)
=+..|+. ++| .+| ++. ...+ ++. .... .++ +++|+-.-.| .++|+. ++.+|..+.++|+++|
T Consensus 146 vVVKp~~--~~~-gkGV~vv~~~eel~~a~~~~~~~~~~g~~~~~vlIEEfl~G---~E~Sv~-~~~dg~~~~~lp~~~d 218 (426)
T PRK13789 146 IVIKADG--LAA-GKGVTVATEKKMAKRALKEIFKDKKFGQSGNQVVIEEFMEG---QEASIF-AISDGDSYFLLPAAQD 218 (426)
T ss_pred EEEEeCC--CCC-CCcEEEECCHHHHHHHHHHHHhhccccCCCCeEEEEECcCC---eEEEEE-EEECCCEEEEccceEe
Confidence 3344442 232 132 222 1111 110 0101 012 4555544455 468875 7889888889999999
Q ss_pred cccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeee
Q psy13615 177 HKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKED 256 (263)
Q Consensus 177 hkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~ 256 (263)
|||.++.|.|||||||++++|.|.++++..+++.++|+.+++++|+++|++|+|++|++||.+..+ .+.|+||
T Consensus 219 ~k~~~d~d~g~~tggmg~~~P~p~~~~~~~~~i~~~i~~~~~~~l~~~g~~~~Gvl~~e~~it~~g-------~~~vlE~ 291 (426)
T PRK13789 219 HKRAFDGDQGPNTGGMGAYCPAPVITEAILQKVKERIFDPMFDDFRKKGHPYRGLLYAGLMISPEG-------EPKVVEF 291 (426)
T ss_pred cccccCCCCCCCCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEEEcCCC-------CEEEEEE
Confidence 999999999999999999999999999999999989999999999999999999999999955433 0567899
Q ss_pred CCCCCCC
Q psy13615 257 NPEEGDP 263 (263)
Q Consensus 257 n~~~gdp 263 (263)
|+|||||
T Consensus 292 n~R~Gdp 298 (426)
T PRK13789 292 NCRFGDP 298 (426)
T ss_pred ecCCCCc
Confidence 9999998
No 19
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=99.80 E-value=2.1e-19 Score=172.68 Aligned_cols=111 Identities=37% Similarity=0.553 Sum_probs=97.3
Q ss_pred CcEEEEecCCCCCccccceeEEEecCcceeecCCccccccccCCCCCCCCCCeeEEC----cccCCCHHHHHHHHHHHHH
Q psy13615 140 GDVVIALPSSGIHSNGFSLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYC----PCDILTEAQKKEIHDTILM 215 (263)
Q Consensus 140 g~~ii~Lp~~G~~~~g~Sl~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~----pv~i~~~~~~~~i~~~il~ 215 (263)
+.+||+-.-.|. ++|+. +++||..+.+++++|||||++++|.||+|||||+++ |.|.++++..+++ .+++.
T Consensus 182 ~~viIEEfl~G~---E~Svd-~~~dg~~~~~l~~~~d~~r~~~~d~gp~tGgmG~~s~~~~~~p~l~~~~~~~i-~~i~~ 256 (435)
T PRK06395 182 GVVLIEKKMTGE---EFSLQ-AFSDGKHLSFMPIVQDYKRAYEGDHGPNTGGMGSISDRDFSLPFLSKDAPERA-KHILN 256 (435)
T ss_pred CcEEEEeecCCc---eEEEE-EEEcCCeEEEecccceeeecccCCCCCccCCCccccCCCCCCCCCCHHHHHHH-HHHHH
Confidence 456665555554 58875 889999999999999999999999999999999999 7888999999999 68999
Q ss_pred HHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCCCC
Q psy13615 216 RVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGDP 263 (263)
Q Consensus 216 ~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~gdp 263 (263)
+++++|..++.+|+|+||+++|.+..+ ++|+|||+|||||
T Consensus 257 ~~~~~l~~~~~~~~G~l~~~~~lt~~g--------p~ViE~n~R~gdp 296 (435)
T PRK06395 257 DIIRAMKDENNPFKGIMYGQFMDTPNG--------VKVIEINARFADP 296 (435)
T ss_pred HHHHHHHhcCCceEEEEEEEEEEeCCC--------cEEEEEeCCCCCc
Confidence 999999999999999999999955555 4667999999998
No 20
>PLN02285 methionyl-tRNA formyltransferase
Probab=99.79 E-value=1.3e-19 Score=168.63 Aligned_cols=169 Identities=18% Similarity=0.192 Sum_probs=128.0
Q ss_pred CccEEEEEcCc--chhHHHHHHHhccccCCCCceEEEEEecCCCC----------hhhHHHHHcCCCEEEeeCCCCCCHH
Q psy13615 10 RKRVAVLISGT--GTNLKSLLEATSNRSDIMRAEIVLVVSNKHNV----------EGLNIARNAGIPTKVSTYKHTLILS 77 (263)
Q Consensus 10 ~~riavl~SG~--Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a----------~gl~~A~~~gIP~~~v~~~~~~~~~ 77 (263)
++||++|+|+. -+||++|+++ .+.+..+++|++|+||.+.+ ++.++|+++|||++++......
T Consensus 6 ~~kI~f~Gt~~fa~~~L~~L~~~--~~~~~~~~~iv~Vvt~~~~~~gr~~~~~~~pv~~~A~~~gIp~~~v~~~~~~--- 80 (334)
T PLN02285 6 KKRLVFLGTPEVAATVLDALLDA--SQAPDSAFEVAAVVTQPPARRGRGRKLMPSPVAQLALDRGFPPDLIFTPEKA--- 80 (334)
T ss_pred ccEEEEEECCHHHHHHHHHHHhh--hhccCCCCeEEEEEeCCCCcccCCcccCCCHHHHHHHHcCCCcceecCcccc---
Confidence 46899999997 8999999965 34455568999999998766 4789999999997754222111
Q ss_pred HHHHHHHHhccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEE----ee--cCCcCCccccccCCcEEEEecCCCC
Q psy13615 78 NSLQVMQKVGAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGA----VE--KASLLPKVKDVAAGDVVIALPSSGI 151 (263)
Q Consensus 78 ~~~~i~~~l~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~----~~--~~~~in~hpsl~~g~~ii~Lp~~G~ 151 (263)
...++++.+ ++ +++|++++||||+.+ ++ +..++|+|||+ ||.
T Consensus 81 ~~~~~~~~l--~~-------------------~~~Dliv~~~~~~ilp~~~l~~~~~g~iNiHpSL--------LP~--- 128 (334)
T PLN02285 81 GEEDFLSAL--RE-------------------LQPDLCITAAYGNILPQKFLDIPKLGTVNIHPSL--------LPL--- 128 (334)
T ss_pred CCHHHHHHH--Hh-------------------hCCCEEEhhHhhhhcCHHHHhhccCCEEEEeccc--------ccC---
Confidence 122334555 56 789999999999842 32 35689999999 998
Q ss_pred Cccccce-eEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHH-------HHHHHHHHHHh
Q psy13615 152 HSNGFSL-VLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDT-------ILMRVIKKMIA 223 (263)
Q Consensus 152 ~~~g~Sl-~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~-------il~~~i~~~~~ 223 (263)
++|.++ +|++.+| ...+|+| .| +.+++.|||+|.+|.++++.++|+.+++.++ ++.+++..+.+
T Consensus 129 -yRG~~pi~~ai~~G--~~~tGvT-ih----~~~~~~D~G~Ii~q~~~~I~~~dt~~~L~~kl~~~~~~ll~~~l~~l~~ 200 (334)
T PLN02285 129 -YRGAAPVQRALQDG--VNETGVS-VA----FTVRALDAGPVIAQERVEVDEDIKAPELLPLLFELGTKLLLRELPSVLD 200 (334)
T ss_pred -CCCcCHHHHHHHcC--CCcEEEE-EE----EECCCccCCCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 334444 4566766 4559999 47 8999999999999999999988888887765 46777777753
No 21
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=99.77 E-value=1.4e-18 Score=168.93 Aligned_cols=111 Identities=28% Similarity=0.449 Sum_probs=95.9
Q ss_pred cEEEEecCCCCCccccceeEEEecCcceeecCCccccccccCCCCCCCCCCeeEECc----ccCCCHHHHHHHHHHHHHH
Q psy13615 141 DVVIALPSSGIHSNGFSLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCP----CDILTEAQKKEIHDTILMR 216 (263)
Q Consensus 141 ~~ii~Lp~~G~~~~g~Sl~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~p----v~i~~~~~~~~i~~~il~~ 216 (263)
.++|+-...|. ++|+. +++||..+.+++.+||||++++.|.||||||||+++| +|.++++..+++. +++.+
T Consensus 198 ~VlIEEfL~G~---E~SV~-al~dG~~~~~l~~~qd~k~~~~~d~gpntGgmg~~~p~~~~~P~~~~~~~~~~~-~~v~~ 272 (486)
T PRK05784 198 KILVEEKVDGV---EYTLQ-VLTDGETVIPLPLAQDYPHAYEDGIGPETGGMGSISGPGELLPFINEEEYEEAV-EIVKR 272 (486)
T ss_pred eEEEEEccCCe---EEEEE-EEECCCeEEEeeeeEeecceecCCCCCCCCCCcccCCccccCCCCCHHHHHHHH-HHHHH
Confidence 45666555664 47875 8889988888999999999999999999999999999 9999999988886 89999
Q ss_pred HHHHHHhc-CCCeEEEEeeccccccCCceeeecCcceeeeeCCCCCCC
Q psy13615 217 VIKKMIAE-GTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGDP 263 (263)
Q Consensus 217 ~i~~~~~e-g~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~gdp 263 (263)
++++|..+ |++|+|++|++||.+. ..|++|+|||+|||||
T Consensus 273 ~l~al~~~~g~~~~G~l~~elmlt~-------~~GP~vIE~n~R~Gdp 313 (486)
T PRK05784 273 TIDAIYKETGERYVGVISGQMMLTE-------LWGPTVIEYYSRFGDP 313 (486)
T ss_pred HHHHHHHhcCCCcEEEEEEEEEEec-------CCCcEEEEEecccCCc
Confidence 99999998 9999999999999540 4455677999999998
No 22
>PLN02257 phosphoribosylamine--glycine ligase
Probab=99.73 E-value=2.5e-17 Score=158.37 Aligned_cols=209 Identities=28% Similarity=0.315 Sum_probs=135.8
Q ss_pred ceEEEEEecCCCC-hhhHHHHHcCCCEEEeeCCC---CCCHHHHHHHHHHhccccCCCCceeeecc-ccc-------cCC
Q psy13615 40 AEIVLVVSNKHNV-EGLNIARNAGIPTKVSTYKH---TLILSNSLQVMQKVGAKYSDIAPFSQDGG-ETA-------ELP 107 (263)
Q Consensus 40 ~~iv~Visn~~~a-~gl~~A~~~gIP~~~v~~~~---~~~~~~~~~i~~~l~~~~~~~~~~~~~gg-e~~-------~l~ 107 (263)
.+.+.+-+..+.. ..++..+++|+|++..+... ..++.+.+++++..++.. .....+-. +.+ ..|
T Consensus 63 id~vvvg~E~~lv~~~~d~l~~~Gi~~~Gps~~aa~l~~dK~~~K~~l~~~GIpt---p~~~~~~~~~e~~~~~~~~g~P 139 (434)
T PLN02257 63 VGLVVVGPEAPLVAGLADDLVKAGIPTFGPSAEAAALEGSKNFMKDLCDKYKIPT---AKYETFTDPAAAKKYIKEQGAP 139 (434)
T ss_pred CCEEEECCchHHHHHHHHHHHHCCCCEECChHHHHHHHcCHHHHHHHHHHcCCCC---CCeEEeCCHHHHHHHHHHcCCC
Confidence 4555555555543 33567778899987765433 234567777777664443 22222211 000 023
Q ss_pred CCcCCCcEEEeeeeeEEee-cCCcCCcccc------c-cCC-cEEEEecCCCCCccccceeEEEecCcceeecCCccccc
Q psy13615 108 GLYQPGDYDLAGFAVGAVE-KASLLPKVKD------V-AAG-DVVIALPSSGIHSNGFSLVLCFTDGKTVKVMPPSQDHK 178 (263)
Q Consensus 108 ~~~~~d~i~LAG~m~~~~~-~~~~in~hps------l-~~g-~~ii~Lp~~G~~~~g~Sl~~ai~dg~~~~~~~~t~dhk 178 (263)
=+..++. .-+|....++. ...+...... + ..+ .++|+-.-.|. ++|+. +++||..+.+++..||||
T Consensus 140 vVVKp~~-~~~GkGV~iv~~~~el~~a~~~~~~~~~fg~~~~~vlIEefi~G~---E~Sv~-~~~dG~~~~pl~~~~dhk 214 (434)
T PLN02257 140 IVVKADG-LAAGKGVVVAMTLEEAYEAVDSMLVKGAFGSAGSEVVVEEFLDGE---EASFF-ALVDGENAIPLESAQDHK 214 (434)
T ss_pred EEEEcCC-CCCCCCEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCCCC---EEEEE-EEECCCcEEEEEeeeecc
Confidence 3344431 11221111222 1111111001 0 112 34454444554 58875 788988888888889999
Q ss_pred cccCCCCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccc-cCCceeeecCcceeeeeC
Q psy13615 179 RKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEG-TVTAKVFSSRNRREKEDN 257 (263)
Q Consensus 179 r~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~-~~~~~~~~~~~~~~~e~n 257 (263)
|+|+.|.|+|||||++++|.|.++++..+++.++++.+++++|..++.+|+|+||++||.+ ..+ ++.|+|||
T Consensus 215 r~~d~d~g~ntggmg~~sp~p~l~~~~~~~i~~~i~~~~~~al~~~g~~y~Gvl~ve~ml~~~~g-------~p~vLE~N 287 (434)
T PLN02257 215 RVGDGDTGPNTGGMGAYSPAPVLTPELESKVMETIIYPTVKGMAAEGCKFVGVLYAGLMIEKKSG-------LPKLLEYN 287 (434)
T ss_pred cccCCCCCCCCCCCeeEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEEEEEEEcCCC-------CEEEEEEE
Confidence 9999999999999999999999999999999899999999999999999999999999965 222 25678999
Q ss_pred CCCCCC
Q psy13615 258 PEEGDP 263 (263)
Q Consensus 258 ~~~gdp 263 (263)
+|||||
T Consensus 288 ~R~Gdp 293 (434)
T PLN02257 288 VRFGDP 293 (434)
T ss_pred CCCCCC
Confidence 999998
No 23
>PRK06988 putative formyltransferase; Provisional
Probab=99.63 E-value=6.5e-16 Score=142.70 Aligned_cols=159 Identities=19% Similarity=0.225 Sum_probs=117.0
Q ss_pred ccEEEEEcCc-c-hhHHHHHHHhccccCCCCceEEEEEecCCC-------ChhhHHHHHcCCCEEEeeCCCCCCHHHHHH
Q psy13615 11 KRVAVLISGT-G-TNLKSLLEATSNRSDIMRAEIVLVVSNKHN-------VEGLNIARNAGIPTKVSTYKHTLILSNSLQ 81 (263)
Q Consensus 11 ~riavl~SG~-G-snl~al~~~~~~~~~~l~~~iv~Visn~~~-------a~gl~~A~~~gIP~~~v~~~~~~~~~~~~~ 81 (263)
+||++|+|+. | .+|+.|+++ +.+|++|+|+.+. .+..++|+++|||++...... + .+
T Consensus 3 mkIvf~Gs~~~a~~~L~~L~~~--------~~~i~~Vvt~~d~~~~~~~~~~v~~~A~~~gip~~~~~~~~--~----~~ 68 (312)
T PRK06988 3 PRAVVFAYHNVGVRCLQVLLAR--------GVDVALVVTHEDNPTENIWFGSVAAVAAEHGIPVITPADPN--D----PE 68 (312)
T ss_pred cEEEEEeCcHHHHHHHHHHHhC--------CCCEEEEEcCCCCCccCcCCCHHHHHHHHcCCcEEccccCC--C----HH
Confidence 5999999997 4 377777621 3689999997422 266899999999987643221 2 23
Q ss_pred HHHHhccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEE----ee--cCCcCCccccccCCcEEEEecCCCCCccc
Q psy13615 82 VMQKVGAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGA----VE--KASLLPKVKDVAAGDVVIALPSSGIHSNG 155 (263)
Q Consensus 82 i~~~l~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~----~~--~~~~in~hpsl~~g~~ii~Lp~~G~~~~g 155 (263)
+++.+ ++ .++|++++++|+..+ ++ +..++|+|||+ ||. ++|
T Consensus 69 ~~~~l--~~-------------------~~~Dliv~~~~~~iip~~il~~~~~g~iNiHpsl--------LP~----yRG 115 (312)
T PRK06988 69 LRAAV--AA-------------------AAPDFIFSFYYRHMIPVDLLALAPRGAYNMHGSL--------LPK----YRG 115 (312)
T ss_pred HHHHH--Hh-------------------cCCCEEEEehhccccCHHHHhcCCCCEEEeeCcc--------ccC----CCC
Confidence 34555 56 789999999998743 22 34579999999 998 444
Q ss_pred cce-eEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHHH-------HHHHHHHHHh
Q psy13615 156 FSL-VLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTI-------LMRVIKKMIA 223 (263)
Q Consensus 156 ~Sl-~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~i-------l~~~i~~~~~ 223 (263)
.++ +|++.+|.. .+|+| .| +.+++.|||+|.+|..+|+.++|+..++.+++ +.+++..+.+
T Consensus 116 ~~pi~~ai~~g~~--~tGvT-ih----~~~~~~D~G~Il~q~~~~I~~~dt~~~L~~kl~~~~~~ll~~~l~~l~~ 184 (312)
T PRK06988 116 RVPVNWAVLNGET--ETGAT-LH----EMVAKPDAGAIVDQTAVPILPDDTAAQVFDKVTVAAEQTLWRVLPALLA 184 (312)
T ss_pred cCHHHHHHHcCCC--ceEEE-EE----EECCCCCCCCeEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 444 567777654 48999 46 89999999999999999998888888877653 5666666643
No 24
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=99.61 E-value=4.7e-15 Score=140.20 Aligned_cols=220 Identities=26% Similarity=0.400 Sum_probs=136.1
Q ss_pred hhHHHHHHHhccccCCCCceEEEEEecCCCChh-hHHHHHcCCCEEEeeCCC---CCCHHHHHHHHHHhccccCCCCcee
Q psy13615 22 TNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEG-LNIARNAGIPTKVSTYKH---TLILSNSLQVMQKVGAKYSDIAPFS 97 (263)
Q Consensus 22 snl~al~~~~~~~~~~l~~~iv~Visn~~~a~g-l~~A~~~gIP~~~v~~~~---~~~~~~~~~i~~~l~~~~~~~~~~~ 97 (263)
++.+.|++. ++.. ..+.+.+-+..+.+.+ .+..++.|||++..+... +.++.+.+++++..++.. ....
T Consensus 14 ~d~~~l~~~--~~~~--~id~vi~g~E~~l~~~~~d~l~~~Gi~~~g~s~~a~~l~~dK~~~k~~l~~~gIpt---p~~~ 86 (379)
T PRK13790 14 SDHQAILDF--AKQQ--NVDWVVIGPEQPLIDGLADILRANGFKVFGPNKQAAQIEGSKLFAKKIMEKYNIPT---ADYK 86 (379)
T ss_pred CCHHHHHHH--HHHh--CCCEEEECCcHHHHHHHHHHHHhCCCcEECCCHHHHHHhCCHHHHHHHHHHCCCCC---CCEE
Confidence 455666543 2212 3455555555544433 456777899877655432 234466666666654443 2222
Q ss_pred eecccc--------ccCCCCcCCCcEEEeeeeeE--Eee-cCCc---CCc-cccccCCcEEEEecCCCCCccccceeEEE
Q psy13615 98 QDGGET--------AELPGLYQPGDYDLAGFAVG--AVE-KASL---LPK-VKDVAAGDVVIALPSSGIHSNGFSLVLCF 162 (263)
Q Consensus 98 ~~gge~--------~~l~~~~~~d~i~LAG~m~~--~~~-~~~~---in~-hpsl~~g~~ii~Lp~~G~~~~g~Sl~~ai 162 (263)
..-... -..|=+..|+. ++| .++ ++. ...+ +.. ...-..+.++|+-.-.| .++|+. ++
T Consensus 87 ~~~~~~ea~~~~~~~g~PvVvKp~~--~~~-gkGV~iv~~~~el~~a~~~~~~~~~~~~vlvEe~i~G---~E~sv~-~~ 159 (379)
T PRK13790 87 EVERKKDALTYIENCELPVVVKKDG--LAA-GKGVIIADTIEAARSAIEIMYGDEEEGTVVFETFLEG---EEFSLM-TF 159 (379)
T ss_pred EECCHHHHHHHHHhcCCCEEEEeCC--CCC-CCCEEEECCHHHHHHHHHHHHhcCCCCeEEEEEcccC---ceEEEE-EE
Confidence 211100 01222334332 222 122 222 1111 100 00001244555443455 458874 77
Q ss_pred ecCcceeec-CCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccC
Q psy13615 163 TDGKTVKVM-PPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTV 241 (263)
Q Consensus 163 ~dg~~~~~~-~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~ 241 (263)
++|....++ +++++|||.|+.|.|++||||++++|.|.+++++.+++.+++..+++++|..+|.+|.|++|++|+.+
T Consensus 160 ~~g~~~~~~~~~~~~~kr~~~~d~g~~tgg~~~~~p~~~l~~~~~~~~~~~i~~~~~~aL~~~g~~~~Gvl~~e~~lt-- 237 (379)
T PRK13790 160 VNGDLAVPFDCIAQDHKRAFDHDEGPNTGGMGAYCPVPHISDDVLKLTNETIAQPIAKAMLNEGYQFFGVLYIGAILT-- 237 (379)
T ss_pred eeCCEEEecccccccccccccCCCCCcCCCCceEeeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEe--
Confidence 787765555 67889999999999999999999999998888888888789999999999999999999999999954
Q ss_pred CceeeecCcceeeeeCCCCCCC
Q psy13615 242 TAKVFSSRNRREKEDNPEEGDP 263 (263)
Q Consensus 242 ~~~~~~~~~~~~~e~n~~~gdp 263 (263)
..|+.|+|+|+|||||
T Consensus 238 ------~~g~~viEiN~R~G~p 253 (379)
T PRK13790 238 ------KDGPKVIEFNARFGDP 253 (379)
T ss_pred ------CCCeEEEEEEcccCCC
Confidence 4456778999999998
No 25
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=6.4e-15 Score=135.06 Aligned_cols=161 Identities=18% Similarity=0.226 Sum_probs=124.7
Q ss_pred CccEEEEEcCc--chhHHHHHHHhccccCCCCceEEEEEecCCC----------ChhhHHHHHcCCCEEEeeCCCCCCHH
Q psy13615 10 RKRVAVLISGT--GTNLKSLLEATSNRSDIMRAEIVLVVSNKHN----------VEGLNIARNAGIPTKVSTYKHTLILS 77 (263)
Q Consensus 10 ~~riavl~SG~--Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~----------a~gl~~A~~~gIP~~~v~~~~~~~~~ 77 (263)
++||+||++.. -..|++|+++ +.+|++|+|.-+. .+..+.|.++|||++...... +.
T Consensus 1 ~mkivF~GTp~fa~~~L~~L~~~--------~~eivaV~Tqpdkp~gR~~~l~~spVk~~A~~~~ipv~qP~~l~--~~- 69 (307)
T COG0223 1 MMRIVFFGTPEFAVPSLEALIEA--------GHEIVAVVTQPDKPAGRGKKLTPSPVKRLALELGIPVFQPEKLN--DP- 69 (307)
T ss_pred CcEEEEEcCchhhHHHHHHHHhC--------CCceEEEEeCCCCccCCCCcCCCChHHHHHHHcCCceeccccCC--cH-
Confidence 45899999987 5678887732 3799999997322 267889999999977765433 21
Q ss_pred HHHHHHHHhccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeE----EeecC--CcCCccccccCCcEEEEecCCCC
Q psy13615 78 NSLQVMQKVGAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVG----AVEKA--SLLPKVKDVAAGDVVIALPSSGI 151 (263)
Q Consensus 78 ~~~~i~~~l~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~----~~~~~--~~in~hpsl~~g~~ii~Lp~~G~ 151 (263)
++.+.+ ++ .++|+++.+.|.+. +++.. .++|+|||| ||.
T Consensus 70 ---e~~~~l--~~-------------------l~~D~ivvvayG~ilp~~iL~~~~~G~iNvH~SL--------LPr--- 114 (307)
T COG0223 70 ---EFLEEL--AA-------------------LDPDLIVVVAYGQILPKEILDLPPYGCINLHPSL--------LPR--- 114 (307)
T ss_pred ---HHHHHH--hc-------------------cCCCEEEEEehhhhCCHHHHhcCcCCeEEecCcc--------Ccc---
Confidence 344555 55 78999999999984 33333 489999999 999
Q ss_pred Cccccce-eEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHH-------HHHHHHHHHHh
Q psy13615 152 HSNGFSL-VLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDT-------ILMRVIKKMIA 223 (263)
Q Consensus 152 ~~~g~Sl-~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~-------il~~~i~~~~~ 223 (263)
++|.++ +|++.+|+.. +|+| ++..|+|+|||+|.+|..+++.++|+..++.++ ++.+++..+.+
T Consensus 115 -~RGaAPIq~aI~~Gd~~--TGvT-----im~M~~~lDaG~Il~q~~~~I~~~dta~~L~~kLa~~ga~lL~~~L~~i~~ 186 (307)
T COG0223 115 -YRGAAPIQWAILNGDTE--TGVT-----IMQMDEGLDAGDILAQREVPIEPDDTAGSLHDKLAELGAELLLETLPQLEA 186 (307)
T ss_pred -ccCccHHHHHHHcCCcc--cceE-----EEEccccCCCcceeeeEEeccCCcccHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 667777 7888987555 8999 449999999999999999999999999988875 57788888865
Q ss_pred c
Q psy13615 224 E 224 (263)
Q Consensus 224 e 224 (263)
.
T Consensus 187 g 187 (307)
T COG0223 187 G 187 (307)
T ss_pred C
Confidence 3
No 26
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=99.53 E-value=1.3e-14 Score=134.16 Aligned_cols=159 Identities=17% Similarity=0.156 Sum_probs=116.5
Q ss_pred ccEEEEEcCc--chhHHHHHHHhccccCCCCceEEEEEecCCC----------ChhhHHHHHcCCCEEEeeCCCCCCHHH
Q psy13615 11 KRVAVLISGT--GTNLKSLLEATSNRSDIMRAEIVLVVSNKHN----------VEGLNIARNAGIPTKVSTYKHTLILSN 78 (263)
Q Consensus 11 ~riavl~SG~--Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~----------a~gl~~A~~~gIP~~~v~~~~~~~~~~ 78 (263)
+||++|+|+. =..|++|++ . +.++++|+|+.+. .+..++|+++|||++..+..+.
T Consensus 1 mkIvf~Gs~~~a~~~L~~L~~-----~---~~~i~~Vvt~pd~~~~r~~~~~~~~v~~~A~~~~Ipv~~~~~~~~----- 67 (313)
T TIGR00460 1 LRIVFFGTPTFSLPVLEELRE-----D---NFEVVGVVTQPDKPAGRGKKLTPPPVKVLAEEKGIPVFQPEKQRQ----- 67 (313)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----C---CCcEEEEEcCCCCccCCCCCCCCChHHHHHHHcCCCEEecCCCCc-----
Confidence 3899998876 245555552 1 3689999986422 3478999999999987654431
Q ss_pred HHHHHHHhccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEE----ee--cCCcCCccccccCCcEEEEecCCCCC
Q psy13615 79 SLQVMQKVGAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGA----VE--KASLLPKVKDVAAGDVVIALPSSGIH 152 (263)
Q Consensus 79 ~~~i~~~l~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~----~~--~~~~in~hpsl~~g~~ii~Lp~~G~~ 152 (263)
.+.++.+ ++ +++|++++++|+..+ ++ +..++|+|||+ ||.
T Consensus 68 -~~~~~~l--~~-------------------~~~Dliv~~~~~~iip~~il~~~~~g~iNiHpSl--------LP~---- 113 (313)
T TIGR00460 68 -LEELPLV--RE-------------------LKPDVIVVVSFGKILPKEFLDLFPYGCINVHPSL--------LPR---- 113 (313)
T ss_pred -HHHHHHH--Hh-------------------hCCCEEEEccchhhCCHHHHhhccCCEEEecCcc--------ccC----
Confidence 1234445 55 789999999998742 33 24589999999 998
Q ss_pred ccccce-eEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHH-------HHHHHHHHHHh
Q psy13615 153 SNGFSL-VLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDT-------ILMRVIKKMIA 223 (263)
Q Consensus 153 ~~g~Sl-~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~-------il~~~i~~~~~ 223 (263)
++|.++ .|++.+|.. .+|+| .| ..+++.|||+|.+|..+++.++|+..++.++ ++.+++..+.+
T Consensus 114 yRG~~pi~wai~~G~~--~tGvT-ih----~~~~~~D~G~Ii~q~~~~I~~~~t~~~l~~~l~~~~~~ll~~~l~~l~~ 185 (313)
T TIGR00460 114 WRGGAPIQRAILNGDK--KTGVT-IM----QMVPKMDAGDILKQETFPIEEEDNSGTLSDKLSELGAQLLIETLKELPE 185 (313)
T ss_pred CCCccHHHHHHHCCCC--eEEEE-EE----EEccccCCCCeEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 445554 567776644 58999 46 8999999999999999999888888877665 46777777653
No 27
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=99.52 E-value=1.7e-14 Score=133.02 Aligned_cols=159 Identities=18% Similarity=0.221 Sum_probs=114.3
Q ss_pred ccEEEEEcCc-c-hhHHHHHHHhccccCCCCceEEEEEecCCC----------ChhhHHHHHcCCCEEEeeCCCCCCHHH
Q psy13615 11 KRVAVLISGT-G-TNLKSLLEATSNRSDIMRAEIVLVVSNKHN----------VEGLNIARNAGIPTKVSTYKHTLILSN 78 (263)
Q Consensus 11 ~riavl~SG~-G-snl~al~~~~~~~~~~l~~~iv~Visn~~~----------a~gl~~A~~~gIP~~~v~~~~~~~~~~ 78 (263)
+||++|+|+. + ..|++|+++ ..++++|+|..+. .+..++|+++|||++..+... +
T Consensus 1 mkIvf~G~~~~a~~~L~~L~~~--------~~~i~~Vvt~~~~~~~r~~~~~~~~v~~~a~~~~Ip~~~~~~~~--~--- 67 (309)
T PRK00005 1 MRIVFMGTPEFAVPSLKALLES--------GHEVVAVVTQPDRPAGRGKKLTPSPVKQLALEHGIPVLQPEKLR--D--- 67 (309)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--------CCcEEEEECCCCCCCCCCCCCCCCHHHHHHHHcCCCEECcCCCC--C---
Confidence 4899998886 2 566666521 3689999985321 246799999999986543322 2
Q ss_pred HHHHHHHhccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEE----ee--cCCcCCccccccCCcEEEEecCCCCC
Q psy13615 79 SLQVMQKVGAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGA----VE--KASLLPKVKDVAAGDVVIALPSSGIH 152 (263)
Q Consensus 79 ~~~i~~~l~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~----~~--~~~~in~hpsl~~g~~ii~Lp~~G~~ 152 (263)
.++++.+ ++ +++|++++++|+..+ ++ +..++|+|||+ ||.
T Consensus 68 -~~~~~~l--~~-------------------~~~Dliv~~~~~~iip~~il~~~~~g~iNiHpsl--------LP~---- 113 (309)
T PRK00005 68 -PEFLAEL--AA-------------------LNADVIVVVAYGQILPKAVLDIPRLGCINLHASL--------LPR---- 113 (309)
T ss_pred -HHHHHHH--Hh-------------------cCcCEEEEehhhcccCHHHHhcCCCCEEEEeCcc--------ccc----
Confidence 2234445 56 789999999998742 33 23489999999 998
Q ss_pred ccccce-eEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHH-------HHHHHHHHHHh
Q psy13615 153 SNGFSL-VLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDT-------ILMRVIKKMIA 223 (263)
Q Consensus 153 ~~g~Sl-~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~-------il~~~i~~~~~ 223 (263)
++|.++ +|++.+|.. .+|+| .| ..|++.|+|++.+|.++++.++|+.+++.++ ++.+++..+.+
T Consensus 114 yRG~~pi~wai~~g~~--~~GvT-ih----~~~~~~D~G~Ii~q~~~~i~~~dt~~~L~~kl~~~~~~ll~~~i~~l~~ 185 (309)
T PRK00005 114 WRGAAPIQRAIIAGDA--ETGVT-IM----QMDEGLDTGDMLLKAEVPITPTDTAGELHDKLAELGADLLVETLKGLED 185 (309)
T ss_pred CCCccHHHHHHHcCCC--eEEEE-EE----EECCcccCCCEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333 567776644 48999 47 8899999999999999999888888887765 45667777653
No 28
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=99.46 E-value=4.7e-13 Score=127.78 Aligned_cols=111 Identities=39% Similarity=0.606 Sum_probs=95.1
Q ss_pred cEEEEecCCCCCccccceeEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHHH
Q psy13615 141 DVVIALPSSGIHSNGFSLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKK 220 (263)
Q Consensus 141 ~~ii~Lp~~G~~~~g~Sl~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~~ 220 (263)
.++|+-.-.| .++|+. ++.+|..+.+++.+++|+|+++.|.+++||+|++++|.|.++++..+++.+++..+++++
T Consensus 181 ~vlvEe~i~G---~E~sv~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~~~~~~~~~~i~~~~~~a 256 (420)
T PRK00885 181 RVVIEEFLDG---EEASFF-AFVDGENVLPLPTAQDHKRAGDGDTGPNTGGMGAYSPAPVVTEEVVERVMEEIIKPTVKG 256 (420)
T ss_pred eEEEEEccCC---cEEEEE-EEECCCceEeceeeEeeeecccCCCCCCCCCCceeccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4555443455 458874 778988888999999999999999999999999999999888888888887899999999
Q ss_pred HHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCCCC
Q psy13615 221 MIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGDP 263 (263)
Q Consensus 221 ~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~gdp 263 (263)
|...+++|+|+++++|+.+ ..|+.|+|+|+|||||
T Consensus 257 l~~~gl~~~G~~~ve~~~t--------~~g~~viEin~R~g~~ 291 (420)
T PRK00885 257 MAAEGIPYTGVLYAGLMIT--------KDGPKVIEFNARFGDP 291 (420)
T ss_pred HHHcCCCcEeEEEEEEEEE--------CCCcEEEEEecccCCc
Confidence 9999999999999999954 4455688999999997
No 29
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=99.44 E-value=2.1e-13 Score=137.28 Aligned_cols=159 Identities=16% Similarity=0.163 Sum_probs=115.9
Q ss_pred ccEEEEEcCc--chhHHHHHHHhccccCCCCceEEEEEecCCC-------ChhhHHHHHcCCCEEEeeCCCCCCHHHHHH
Q psy13615 11 KRVAVLISGT--GTNLKSLLEATSNRSDIMRAEIVLVVSNKHN-------VEGLNIARNAGIPTKVSTYKHTLILSNSLQ 81 (263)
Q Consensus 11 ~riavl~SG~--Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~-------a~gl~~A~~~gIP~~~v~~~~~~~~~~~~~ 81 (263)
+||+||+|+. =..|++|+++ +.+|++|++..+. .+..++|+++|||++..+..+ + .+
T Consensus 1 mkivf~g~~~~a~~~l~~L~~~--------~~~i~~V~t~pd~~~~~~~~~~v~~~a~~~~ip~~~~~~~~--~----~~ 66 (660)
T PRK08125 1 MKAVVFAYHDIGCVGIEALLAA--------GYEIAAVFTHTDNPGENHFFGSVARLAAELGIPVYAPEDVN--H----PL 66 (660)
T ss_pred CeEEEECCCHHHHHHHHHHHHC--------CCcEEEEEeCCCCCcCCCCcCHHHHHHHHcCCcEEeeCCCC--c----HH
Confidence 3799998776 3556666521 3689999985321 156789999999998765433 2 22
Q ss_pred HHHHhccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEE----ee--cCCcCCccccccCCcEEEEecCCCCCccc
Q psy13615 82 VMQKVGAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGA----VE--KASLLPKVKDVAAGDVVIALPSSGIHSNG 155 (263)
Q Consensus 82 i~~~l~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~----~~--~~~~in~hpsl~~g~~ii~Lp~~G~~~~g 155 (263)
.++.+ ++ +++|++++++|+..+ ++ +..++|+|||+ ||. ++|
T Consensus 67 ~~~~l--~~-------------------~~~D~iv~~~~~~ii~~~il~~~~~g~iN~H~sl--------LP~----yRG 113 (660)
T PRK08125 67 WVERI--RE-------------------LAPDVIFSFYYRNLLSDEILQLAPAGAFNLHGSL--------LPK----YRG 113 (660)
T ss_pred HHHHH--Hh-------------------cCCCEEEEccccccCCHHHHhhcCCCEEEEeCCc--------ccC----CCC
Confidence 34545 56 789999999998743 23 34579999999 999 444
Q ss_pred cce-eEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHH-------HHHHHHHHHHh
Q psy13615 156 FSL-VLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDT-------ILMRVIKKMIA 223 (263)
Q Consensus 156 ~Sl-~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~-------il~~~i~~~~~ 223 (263)
.++ +|++.+|.. .+|+| .| ..|+|.|||+|..|..+|+.++|+..++.++ ++.+++..+.+
T Consensus 114 ~~p~~wai~~g~~--~~GvT-i~----~~~~~~D~G~I~~q~~~~i~~~dt~~~l~~~l~~~~~~l~~~~l~~i~~ 182 (660)
T PRK08125 114 RAPLNWVLVNGET--ETGVT-LH----RMVKRADAGAIVAQQRVAIAPDDTALTLHHKLCHAARQLLEQTLPAIKH 182 (660)
T ss_pred cCHHHHHHHcCCC--cEEEE-EE----EECCCccCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 444 567777654 48999 46 8999999999999999999888888877665 46667776643
No 30
>PRK07579 hypothetical protein; Provisional
Probab=99.28 E-value=3.3e-12 Score=113.92 Aligned_cols=155 Identities=13% Similarity=0.076 Sum_probs=108.6
Q ss_pred CccEEEEEcCc--chhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCHHHHHHHHHHhc
Q psy13615 10 RKRVAVLISGT--GTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLILSNSLQVMQKVG 87 (263)
Q Consensus 10 ~~riavl~SG~--Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~~~~~~i~~~l~ 87 (263)
||||.||.+.. =.+++.|++. ...+..++.++.++.+.-.+ .-+++|...+ +..+.+-+.+
T Consensus 1 ~k~i~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~--------~~~~~~~~~~- 63 (245)
T PRK07579 1 MKTILVLTDNVHAHALAVDLIAR----KNDMDVDYFCSFKSQTSFAK----EIYQSPIKQL--------DVAERVAEIV- 63 (245)
T ss_pred CceEEEEcccHHHHHHHHHHHhh----ccCcceEEEEeccCCccccc----ccccccccCc--------chhhhHHhhh-
Confidence 57899998877 4678888743 34567899998888654221 1233442222 2222222322
Q ss_pred cccCCCCceeeeccccccCCCCcCCCcEEEeeeeeE----EeecCCcCCccccccCCcEEEEecCCCCCccccce-eEEE
Q psy13615 88 AKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVG----AVEKASLLPKVKDVAAGDVVIALPSSGIHSNGFSL-VLCF 162 (263)
Q Consensus 88 ~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~----~~~~~~~in~hpsl~~g~~ii~Lp~~G~~~~g~Sl-~~ai 162 (263)
-++|++++++|++. +++..+++|+|||+ ||. ++|.++ .|++
T Consensus 64 ----------------------~~~DliVvvayg~ilp~~iL~~~~~iNiHpSL--------LP~----yRGaaPi~wAI 109 (245)
T PRK07579 64 ----------------------ERYDLVLSFHCKQRFPAKLVNGVRCINIHPGF--------NPY----NRGWFPQVFSI 109 (245)
T ss_pred ----------------------cCCCEEEEchhhccCCHHHHhhCCEEEEcCCc--------CCC----CCCcCHHHHHH
Confidence 35899999999984 33345799999999 998 334444 5677
Q ss_pred ecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHH-------HHHHHHHHHHh
Q psy13615 163 TDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDT-------ILMRVIKKMIA 223 (263)
Q Consensus 163 ~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~-------il~~~i~~~~~ 223 (263)
.+|. . +|+| .| +.|+|+|||+|.+|..+|+.++|+.+++.++ ++.+++..+.+
T Consensus 110 ~nGe--~-tGvT-ih----~mde~lDtGdIi~Q~~v~I~~~dt~~sL~~kl~~~~~~ll~e~L~~i~~ 169 (245)
T PRK07579 110 INGL--K-IGAT-IH----EMDEQLDHGPIIAQREVEIESWDSSGSVYARVMDIERELVLEHFDAIRD 169 (245)
T ss_pred HCCC--e-EEEE-EE----EEcCCCCCCCeeEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 7774 3 7999 46 9999999999999999999888888877665 47777877754
No 31
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=99.26 E-value=4.5e-11 Score=114.02 Aligned_cols=111 Identities=46% Similarity=0.685 Sum_probs=94.3
Q ss_pred cEEEEecCCCCCccccceeEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHHH
Q psy13615 141 DVVIALPSSGIHSNGFSLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKK 220 (263)
Q Consensus 141 ~~ii~Lp~~G~~~~g~Sl~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~~ 220 (263)
.++|+-.-.| .++|+. .+.+|..+.+++++++|++.++.+.+++||+|++++|.|.++++..+++.+++..+++++
T Consensus 183 ~~lvEe~i~G---~E~sv~-~~~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~i~~~~~~a 258 (423)
T TIGR00877 183 RVVIEEFLDG---EEVSLL-AFVDGKTVIPMPPAQDHKRALEGDKGPNTGGMGAYSPAPVFTEEVEKRIAEEIVEPTVKG 258 (423)
T ss_pred eEEEEECccC---ceEEEE-EEEcCCeEEeceeeeeeeecccCCCCCCCCCCceecCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4455433355 357774 777888888899999999999999999999999999998888888888888999999999
Q ss_pred HHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCCCC
Q psy13615 221 MIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGDP 263 (263)
Q Consensus 221 ~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~gdp 263 (263)
|...+.+|+|++++.|+. |..|++++|+|+|+|||
T Consensus 259 L~~~~~~~~G~~~ie~~~--------t~~g~~viEin~R~g~~ 293 (423)
T TIGR00877 259 MRKEGTPYKGVLYAGLML--------TKEGPKVLEFNCRFGDP 293 (423)
T ss_pred HHHhCCCcEeEEEEEEEE--------ECCCcEEEEEEccCCCc
Confidence 999999999999999994 44456788999999996
No 32
>PLN02557 phosphoribosylformylglycinamidine cyclo-ligase
Probab=99.12 E-value=1.5e-11 Score=116.22 Aligned_cols=138 Identities=39% Similarity=0.625 Sum_probs=109.0
Q ss_pred EEEEEcCcchhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCC--HHHHHHHHHHh--cc
Q psy13615 13 VAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLI--LSNSLQVMQKV--GA 88 (263)
Q Consensus 13 iavl~SG~Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~--~~~~~~i~~~l--~~ 88 (263)
+++-.-+-||++....+ ......++.+.+++..|+-.|.|.+ |.+++++....+ .+..+++++++ +|
T Consensus 99 LV~ttD~vgtk~~~a~~--~~~~~~iG~~aVa~nvnDIaamGA~-------P~~~l~~l~~~~l~~~~l~~i~~Gi~~a~ 169 (379)
T PLN02557 99 LVAGTDGVGTKLKLAFE--TGIHDTIGIDLVAMSVNDIVTSGAK-------PLFFLDYFATSHLDVDLAEKVIKGIVDGC 169 (379)
T ss_pred EEEEeCCCCCCchhhhh--cCcHhhHHHHHHHhHHHHHHHcCCC-------hHHhheecccCCCCHHHHHHHHHHHHHHH
Confidence 44444444887764431 1222346788899999999898887 988888765433 37888899988 77
Q ss_pred ccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEEeecCCcCCccccccCCcEEEEecCCCCCccccceeEEEe
Q psy13615 89 KYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKDVAAGDVVIALPSSGIHSNGFSLVLCFT 163 (263)
Q Consensus 89 ~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~~~~~~~in~hpsl~~g~~ii~Lp~~G~~~~g~Sl~~ai~ 163 (263)
++ ++|.++||||+++|++|..+.+++++++.|++++++++.. ...++||+|+.+++.|+|++|+++.|..+
T Consensus 170 ~~---~Gv~lVGGdT~~~p~~~~~~~~~i~~t~iG~v~~~~~i~~-~~akpGD~Iigl~ssGiHsng~sl~r~~l 240 (379)
T PLN02557 170 QQ---SDCALLGGETAEMPGFYAEGEYDLSGFAVGSVKKDAVIDG-KNIVAGDVLIGLPSSGVHSNGFSLVRRVL 240 (379)
T ss_pred HH---hCCEEEeecceEccCcccCCceeEEEEEEEEEeccccccc-ccCCCCCEEEEecccccccchhhhhHHHH
Confidence 87 9999999999999999988888899999999987777765 56789999999999999999999865444
No 33
>KOG2452|consensus
Probab=97.54 E-value=0.00013 Score=70.20 Aligned_cols=133 Identities=19% Similarity=0.223 Sum_probs=82.7
Q ss_pred CceEEEEEec-----CCCChhhHHHHHcCCCEEEeeCCCCCCHHHHHHHHHHhccccCCCCceeeeccccccCCCCcCCC
Q psy13615 39 RAEIVLVVSN-----KHNVEGLNIARNAGIPTKVSTYKHTLILSNSLQVMQKVGAKYSDIAPFSQDGGETAELPGLYQPG 113 (263)
Q Consensus 39 ~~~iv~Visn-----~~~a~gl~~A~~~gIP~~~v~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~gge~~~l~~~~~~d 113 (263)
+.+|+.|.+= +.|--+++ |++-|+|++-.++-. .+.+...++++.. +. +..+
T Consensus 23 gheiv~vftipdk~g~~d~l~~e-a~kdgvpv~k~srwr-~k~~~lp~~~~~y--~~-------------------~gae 79 (881)
T KOG2452|consen 23 GHEVVGVFTVPDKDGKADPLGLE-AEKDGVPVFKYSRWR-AKAQALPDVVAKY--QA-------------------LGAE 79 (881)
T ss_pred CceEEEEEEecCCCCCcCccccc-ccccCcceechhhhh-hhccccHHHHHHH--Hh-------------------hccc
Confidence 4688877763 33446666 788899988765321 1113444555544 33 2222
Q ss_pred cEEEeeeeeE-----Eee--cCCcCCccccccCCcEEEEecC-CCCCccccceeEEEecCcceeecCCccccccccCCCC
Q psy13615 114 DYDLAGFAVG-----AVE--KASLLPKVKDVAAGDVVIALPS-SGIHSNGFSLVLCFTDGKTVKVMPPSQDHKRKYNNDK 185 (263)
Q Consensus 114 ~i~LAG~m~~-----~~~--~~~~in~hpsl~~g~~ii~Lp~-~G~~~~g~Sl~~ai~dg~~~~~~~~t~dhkr~~~~d~ 185 (263)
+=+|- ||.- +.+ .+.-|-.|||+ ||. .|..++.+ .+..|... -|.+ +|+-|.
T Consensus 80 lnvlp-fcsqfip~ei~~ap~~~siiyhps~--------lp~hrgasainw----tli~gd~~--~g~s-----ifwadd 139 (881)
T KOG2452|consen 80 LNVLP-FCSQFIPMEIISAPRHGSIIYHPSL--------LPRHRGASAINW----TLIHGDKK--GGFS-----IFWADD 139 (881)
T ss_pred ccccc-hhhhccchhhcccccCCceeecccc--------CccccCccccce----EEEecccc--CceE-----EEeecC
Confidence 22222 3321 233 23345569999 998 56555443 44444333 3333 679999
Q ss_pred CCCCCCeeEECcccCCCHHHHHHHHHHHH
Q psy13615 186 GPNTGGMGAYCPCDILTEAQKKEIHDTIL 214 (263)
Q Consensus 186 G~dTGgmga~~pv~i~~~~~~~~i~~~il 214 (263)
|.|||++..|-.+.+.++|+...+-.|.+
T Consensus 140 gldtg~~llqk~c~v~~~dt~~tly~rfl 168 (881)
T KOG2452|consen 140 GLDTGDLLLQKECEVLPDDTVSTLYNRFL 168 (881)
T ss_pred CccccchhhhhhcccCCCccHHHHHHhhc
Confidence 99999999999999999999999988854
No 34
>KOG3082|consensus
Probab=97.05 E-value=0.00022 Score=65.27 Aligned_cols=84 Identities=13% Similarity=0.018 Sum_probs=60.6
Q ss_pred cCCCcEEEeeeeeEE----ee--cCCcCCccccccCCcEEEEecCCCCCccccce-eEEEecCcceeecCCccccccccC
Q psy13615 110 YQPGDYDLAGFAVGA----VE--KASLLPKVKDVAAGDVVIALPSSGIHSNGFSL-VLCFTDGKTVKVMPPSQDHKRKYN 182 (263)
Q Consensus 110 ~~~d~i~LAG~m~~~----~~--~~~~in~hpsl~~g~~ii~Lp~~G~~~~g~Sl-~~ai~dg~~~~~~~~t~dhkr~~~ 182 (263)
-+.++.+.|.|.+-+ +. +...+|+|||+ ||. ++|.++ ++++++|..+ +|+|- . .-
T Consensus 80 ~~~~l~ItaSfGrllp~kll~~~pyg~iNVHPSL--------LPk----~RGaAPV~~all~GD~~--TGVTI-~---~i 141 (338)
T KOG3082|consen 80 PDDQLAITASFGRLLPFKLLNQLPYGGINVHPSL--------LPK----YRGAAPVQRALLNGDTL--TGVTI-Q---TI 141 (338)
T ss_pred CCcceEEEeehhccCcHHHHhhCCcceeecChhh--------ccc----ccCcchHHHHHhcCCcc--cceEE-E---Ee
Confidence 567799999999832 11 23579999999 999 555565 6788887554 78873 1 12
Q ss_pred CCCCCCCCCeeEECcccCCCHHHHHHHHH
Q psy13615 183 NDKGPNTGGMGAYCPCDILTEAQKKEIHD 211 (263)
Q Consensus 183 ~d~G~dTGgmga~~pv~i~~~~~~~~i~~ 211 (263)
..+--|.|++.+|.++++-+..+..++..
T Consensus 142 ~p~rFD~G~ilAQ~~l~v~~~~t~~~L~~ 170 (338)
T KOG3082|consen 142 DPKRFDKGPILAQEYLAVNPKETAPELTA 170 (338)
T ss_pred cccccccccceecceeccCccccchHHHH
Confidence 23367899999999999977777776654
No 35
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=96.59 E-value=0.012 Score=55.55 Aligned_cols=57 Identities=18% Similarity=0.122 Sum_probs=42.4
Q ss_pred eeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCCCC
Q psy13615 192 MGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGDP 263 (263)
Q Consensus 192 mga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~gdp 263 (263)
+..+.|.+ ++++..+++ .++..+++++| + |.|++++.++.+. .+++|+|+|+|+|++
T Consensus 232 ~~~~~p~~-l~~~~~~~i-~~~~~~~~~~L---~--~~G~~~ve~~~~~--------~~~~viEinpR~~~~ 288 (395)
T PRK09288 232 RESWQPQP-MSPAALEEA-QEIAKKVTDAL---G--GRGLFGVELFVKG--------DEVYFSEVSPRPHDT 288 (395)
T ss_pred EEEECCCC-CCHHHHHHH-HHHHHHHHHHc---C--CeeEEEEEEEEeC--------CeEEEEEecCCCCCC
Confidence 44556765 567777777 47777777777 3 8999999999543 456788999999975
No 36
>TIGR00878 purM phosphoribosylaminoimidazole synthetase. This enzyme is found as a homodimeric monofunctional protein in prokaryotes and as part of a larger, multifunctional protein, sometimes with two copies of this enzyme in tandem, in eukaryotes.
Probab=96.55 E-value=0.00029 Score=65.76 Aligned_cols=107 Identities=43% Similarity=0.627 Sum_probs=75.5
Q ss_pred ceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCC--CHHHHHHHHHHh--ccccCCCCceeeeccccccCCCCcCCCcE
Q psy13615 40 AEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTL--ILSNSLQVMQKV--GAKYSDIAPFSQDGGETAELPGLYQPGDY 115 (263)
Q Consensus 40 ~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~--~~~~~~~i~~~l--~~~~~~~~~~~~~gge~~~l~~~~~~d~i 115 (263)
...+.+..|+-.|.|.+ |..+++...++ +.+..+++++++ .|+. +++.++||.|...|.+|.++-+
T Consensus 79 ~~av~~n~sDiaa~Ga~-------P~~~~~~l~~~~~~~~~~~~i~~Gi~~a~~~---~g~~ivGG~t~~~~~~~~~~~~ 148 (332)
T TIGR00878 79 IDLVAMNVNDLLVQGAE-------PLFFLDYLAVGKLDPEVASQIVKGIAEGCKQ---AGCALVGGETAEMPGMYRGGHY 148 (332)
T ss_pred HHHHHHHHHHHHHcCCc-------HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH---cCCEEEceeeeECCCcccCCce
Confidence 33444445555555544 65555543332 247788888888 6676 9999999999999999888667
Q ss_pred EEeeeeeEEeecCCcCCccccccCCcEEEEecCCCCCccccc
Q psy13615 116 DLAGFAVGAVEKASLLPKVKDVAAGDVVIALPSSGIHSNGFS 157 (263)
Q Consensus 116 ~LAG~m~~~~~~~~~in~hpsl~~g~~ii~Lp~~G~~~~g~S 157 (263)
.+++++.|++++.+++.. ...++||.|+..-..|.|+.|.+
T Consensus 149 ~i~~t~iG~~~~~~~~~~-~~a~~GD~i~ltg~~G~~~~g~~ 189 (332)
T TIGR00878 149 DLAGTAVGVVEKDEIITG-EKVKPGDVLIGLGSSGIHSNGLS 189 (332)
T ss_pred EEEEEEEEEEcCccccCc-cCCCCCCEEEEECCchHHHHHHH
Confidence 778888888876666554 45689999998877787765543
No 37
>cd02196 PurM PurM (Aminoimidazole Ribonucleotide [AIR] synthetase), one of eleven enzymes required for purine biosynthesis, catalyzes the conversion of formylglycinamide ribonucleotide (FGAM) and ATP to AIR, ADP, and Pi, the fifth step in de novo purine biosynthesis. The N-terminal domain of PurM is related to the ATP-binding domains of hydrogen expression/formation protein HypE, the AIR synthases, selenophosphate synthetase (SelD), and FGAM synthase and is thought to bind ATP.
Probab=96.43 E-value=0.00093 Score=61.23 Aligned_cols=108 Identities=40% Similarity=0.674 Sum_probs=77.9
Q ss_pred CCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCC--CHHHHHHHHHHh--ccccCCCCceeeeccccccCCCCcCCC
Q psy13615 38 MRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTL--ILSNSLQVMQKV--GAKYSDIAPFSQDGGETAELPGLYQPG 113 (263)
Q Consensus 38 l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~--~~~~~~~i~~~l--~~~~~~~~~~~~~gge~~~l~~~~~~d 113 (263)
++...+++..|+-.|.|.+ |..++....++ +.++..++++++ .|+. +++.++||.|...|.++..+
T Consensus 45 iG~~av~~~~sDiaamGa~-------P~~~~~~l~~~~~~~~~l~~~~~Gi~~~~~~---~gi~ivGGdt~~~~~~~~~~ 114 (297)
T cd02196 45 IGIDLVAMCVNDILCQGAE-------PLFFLDYIATGKLDPEVAAEIVKGIAEGCRQ---AGCALLGGETAEMPGVYAEG 114 (297)
T ss_pred HHHHHHHHhHHHHHHcCCE-------eHHHHhhhhcCCCCHHHHHHHHHHHHHHHHH---cCCeEeeecceEccCcccCC
Confidence 3455666677776777765 76665554443 337788888888 6677 99999999999988888655
Q ss_pred cEEEeeeeeEEeecCCcCCccccccCCcEEEEecCCCCCcccc
Q psy13615 114 DYDLAGFAVGAVEKASLLPKVKDVAAGDVVIALPSSGIHSNGF 156 (263)
Q Consensus 114 ~i~LAG~m~~~~~~~~~in~hpsl~~g~~ii~Lp~~G~~~~g~ 156 (263)
...+++.+.|.+++.+++.. ...++||.|+.....|.++.|.
T Consensus 115 ~~~isvt~iG~~~~~~~~~~-~~a~~Gd~I~~tg~~G~~~~g~ 156 (297)
T cd02196 115 EYDLAGFAVGVVEKDKIIDG-SKIKPGDVLIGLPSSGLHSNGY 156 (297)
T ss_pred ceeEEEEEEEEEeccccccc-cCCCCCCEEEEccCcchhhhHH
Confidence 56677778887775555554 5568999999887778776553
No 38
>PRK05385 phosphoribosylaminoimidazole synthetase; Provisional
Probab=96.35 E-value=0.00069 Score=62.97 Aligned_cols=108 Identities=44% Similarity=0.676 Sum_probs=73.9
Q ss_pred CceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCC--CHHHHHHHHHHh--ccccCCCCceeeeccccccCCCCcCCCc
Q psy13615 39 RAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTL--ILSNSLQVMQKV--GAKYSDIAPFSQDGGETAELPGLYQPGD 114 (263)
Q Consensus 39 ~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~--~~~~~~~i~~~l--~~~~~~~~~~~~~gge~~~l~~~~~~d~ 114 (263)
+...+++..|+-.|.|.+ |..++....+. +.++.+++++++ .|+. +++.++||+|...|.++..+.
T Consensus 78 G~~av~~n~sDIaamGa~-------P~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~---~g~~ivGGdt~~~~~~~~~~~ 147 (327)
T PRK05385 78 GIDLVAMCVNDLLVQGAE-------PLFFLDYIATGKLDPEVAAQVVKGIAEGCEQ---AGCALIGGETAEMPGMYHEGD 147 (327)
T ss_pred HHHHHHHHHHHHHHcCCC-------HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH---cCCeEeCccceECCCcccCCC
Confidence 334445555555555544 66655544332 347778888888 6676 999999999998888774445
Q ss_pred EEEeeeeeEEeecCCcCCccccccCCcEEEEecCCCCCccccc
Q psy13615 115 YDLAGFAVGAVEKASLLPKVKDVAAGDVVIALPSSGIHSNGFS 157 (263)
Q Consensus 115 i~LAG~m~~~~~~~~~in~hpsl~~g~~ii~Lp~~G~~~~g~S 157 (263)
.++++++.|.+++.+.+.. ...++||.|+.....|.++.+.+
T Consensus 148 ~~i~~t~~G~~~~~~~~~r-~~a~~GD~I~~tg~~G~~g~g~~ 189 (327)
T PRK05385 148 YDLAGFAVGVVEKDKIIDG-SKVKEGDVLIGLASSGLHSNGYS 189 (327)
T ss_pred eeEEEEEEEEEecccccCc-CCCCCCCEEEEeCCcchhhhHHH
Confidence 5667778887775555554 55689999998877787765543
No 39
>cd06061 PurM-like1 AIR synthase (PurM) related protein, subgroup 1 of unknown function. The family of PurM related proteins includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM synthase and Selenophosphate synthetase (SelD). They all contain two conserved domains and seem to dimerize. The N-terminal domain forms the dimer interface and is a putative ATP binding domain.
Probab=95.55 E-value=0.0093 Score=54.31 Aligned_cols=101 Identities=22% Similarity=0.225 Sum_probs=69.3
Q ss_pred ceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCC---CHHHHHHHHHHh--ccccCCCCceeeeccccccCCCCcCCCc
Q psy13615 40 AEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTL---ILSNSLQVMQKV--GAKYSDIAPFSQDGGETAELPGLYQPGD 114 (263)
Q Consensus 40 ~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~---~~~~~~~i~~~l--~~~~~~~~~~~~~gge~~~l~~~~~~d~ 114 (263)
...+++..|+-.|.|.+ |...+....++ +.++.+++++++ .|+. +++.++||.|...++...
T Consensus 61 ~~av~~~~sDi~amGa~-------P~~~~~~l~~p~~~~~~~l~~~~~Gi~~~~~~---~gi~ivGG~t~~~~~~~~--- 127 (298)
T cd06061 61 WLAVHIAANDIATSGAR-------PRWLLVTLLLPPGTDEEELKAIMREINEAAKE---LGVSIVGGHTEVTPGVTR--- 127 (298)
T ss_pred eehhhhhHHHHHhcCCC-------CceeEEEEEcCCCCCHHHHHHHHHHHHHHHHH---cCCeEEeeeeEEcCCCCc---
Confidence 34444444454555544 87777665554 347788888888 6677 999999999998776433
Q ss_pred EEEeeeeeEEeecCCcCCccccccCCcEEEEecCCCCCcc
Q psy13615 115 YDLAGFAVGAVEKASLLPKVKDVAAGDVVIALPSSGIHSN 154 (263)
Q Consensus 115 i~LAG~m~~~~~~~~~in~hpsl~~g~~ii~Lp~~G~~~~ 154 (263)
..+++++.|.++....+.. ...++||.|+..-..|.++.
T Consensus 128 ~~i~vt~~G~~~~~~~~~~-~~a~~Gd~i~ltg~~G~~~~ 166 (298)
T cd06061 128 PIISVTAIGKGEKDKLVTP-SGAKPGDDIVMTKGAGIEGT 166 (298)
T ss_pred cEEEEEEEEEEcccccccc-cCCCCCCEEEEeCCchHHHH
Confidence 4677788887764444433 45689999998877676643
No 40
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=95.37 E-value=0.092 Score=48.99 Aligned_cols=55 Identities=15% Similarity=0.146 Sum_probs=35.7
Q ss_pred ECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCCCC
Q psy13615 195 YCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGDP 263 (263)
Q Consensus 195 ~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~gdp 263 (263)
..|.. ++++..+++. ++..+++++| .|.|++.+.++.+..+. +.|+|+|+|+|++
T Consensus 214 ~~p~~-~~~~~~~~~~-~~a~~i~~~l-----~~~G~~~ve~~~~~dg~-------~~v~EinpR~~~s 268 (352)
T TIGR01161 214 VAPAA-VPDAIQARAE-EIARRLMEEL-----GYVGVLAVEMFVLPDGR-------LLINELAPRVHNS 268 (352)
T ss_pred ECCCC-CCHHHHHHHH-HHHHHHHHHc-----CceeEEEEEEEEeCCCc-------EEEEEecCCCCCc
Confidence 34443 4555556653 4555555544 46899999999543331 5688999999974
No 41
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=95.27 E-value=0.032 Score=51.66 Aligned_cols=55 Identities=33% Similarity=0.442 Sum_probs=43.0
Q ss_pred ccCCccEEEEEcCc-chhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEE
Q psy13615 7 MVQRKRVAVLISGT-GTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKV 67 (263)
Q Consensus 7 m~~~~riavl~SG~-Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~ 67 (263)
||++.|++++.+|+ |+.+-..+. +.. ..++++|+.-+++..++++|+++|+|+.+
T Consensus 1 ~m~klrVAIIGtG~IGt~hm~~l~----~~~--~velvAVvdid~es~gla~A~~~Gi~~~~ 56 (302)
T PRK08300 1 MMSKLKVAIIGSGNIGTDLMIKIL----RSE--HLEPGAMVGIDPESDGLARARRLGVATSA 56 (302)
T ss_pred CCCCCeEEEEcCcHHHHHHHHHHh----cCC--CcEEEEEEeCChhhHHHHHHHHcCCCccc
Confidence 78889999999999 886433331 112 46999999988888899999999999764
No 42
>PLN02735 carbamoyl-phosphate synthase
Probab=95.16 E-value=0.081 Score=57.01 Aligned_cols=92 Identities=15% Similarity=0.183 Sum_probs=60.7
Q ss_pred ccccceeEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEE
Q psy13615 153 SNGFSLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEK 232 (263)
Q Consensus 153 ~~g~Sl~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L 232 (263)
+.++++. ++.|+++....++..+| ..+.|+.+|.+....|.+.++++..+++.+ +. .++ .+.+.|+|..
T Consensus 787 g~Ei~V~-vl~D~~G~vv~~~i~e~----~~~~gvhsGds~~~~P~~~L~~e~~~~i~~-~a----~ki-~~~L~~~G~~ 855 (1102)
T PLN02735 787 ATEIDVD-ALADSEGNVVIGGIMEH----IEQAGVHSGDSACSLPTQTIPSSCLATIRD-WT----TKL-AKRLNVCGLM 855 (1102)
T ss_pred cEEEEEE-EEECCCCCEEEecceEe----eeccCccCCCccEEecCCCCCHHHHHHHHH-HH----HHH-HHHcCCccee
Confidence 3456763 67776654333444467 446788999888877776678877777652 22 222 3456688999
Q ss_pred eeccccccCCceeeecCcceeeeeCCCCCC
Q psy13615 233 KRGFTEGTVTAKVFSSRNRREKEDNPEEGD 262 (263)
Q Consensus 233 ~~gl~~~~~~~~~~~~~~~~~~e~n~~~gd 262 (263)
.+.|+.+..+ .+.|+|+|+|++.
T Consensus 856 ~vqf~v~~dg-------~~yviEiNpR~s~ 878 (1102)
T PLN02735 856 NCQYAITPSG-------EVYIIEANPRASR 878 (1102)
T ss_pred eEEEEEcCCC-------cEEEEEEeCCCCc
Confidence 9999964322 2468999999973
No 43
>TIGR02124 hypE hydrogenase expression/formation protein HypE. This family contains HypE (or HupE), a protein required for expression of catalytically active hydrogenase in many systems. It appears to be an accessory protein involved in maturation rather than a regulatory protein involved in expression. HypE shows considerable homology to the thiamine-monophosphate kinase ThiL (TIGR01379) and other enzymes.
Probab=94.71 E-value=0.01 Score=54.96 Aligned_cols=101 Identities=16% Similarity=0.153 Sum_probs=68.0
Q ss_pred eEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCC---CHHHHHHHHHHh--ccccCCCCceeeeccccccCCCCcCCCcE
Q psy13615 41 EIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTL---ILSNSLQVMQKV--GAKYSDIAPFSQDGGETAELPGLYQPGDY 115 (263)
Q Consensus 41 ~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~---~~~~~~~i~~~l--~~~~~~~~~~~~~gge~~~l~~~~~~d~i 115 (263)
..+++..|+-.|.|.+ |.+.+...... +.++.+++++++ +|+. +++.++||.|...++- ..+.+
T Consensus 56 ~av~~n~sDiaamGa~-------P~~~~~~l~lp~~~~~~~l~~~~~Gi~~a~~~---~gi~ivGGdt~~~~~~-~~~~~ 124 (320)
T TIGR02124 56 LAVCGTVNDVAVSGAK-------PLYLSCGFILEEGFPIEDLERIVKSMAEAARK---AGVKIVTGDTKVVEKG-KADGI 124 (320)
T ss_pred HHHHHHHHHHHHcCCc-------chhhEEEEEcCCCCCHHHHHHHHHHHHHHHHH---cCCEEEeeeeEEccCC-CCCcE
Confidence 3344444454455544 87776655432 347888899988 7777 9999999999875422 12456
Q ss_pred EEeeeeeEEeecCCcCCccccccCCcEEEEecCCCCCc
Q psy13615 116 DLAGFAVGAVEKASLLPKVKDVAAGDVVIALPSSGIHS 153 (263)
Q Consensus 116 ~LAG~m~~~~~~~~~in~hpsl~~g~~ii~Lp~~G~~~ 153 (263)
.+++++.|.+++.+++.. ...++||.|+..-..|.++
T Consensus 125 ~i~~t~~G~~~~~~~~~r-~~a~~GD~I~ltg~~G~~g 161 (320)
T TIGR02124 125 FINTTGIGVIPSGIPISA-HNLQPGDKIIVSGTIGDHG 161 (320)
T ss_pred EEEEEEEEEEcCCccccc-cCCCCCCEEEEeCCccHHH
Confidence 777888888875555443 5568999998776556554
No 44
>cd02197 HypE HypE (Hydrogenase expression/formation protein). HypE is involved in Ni-Fe hydrogenase biosynthesis. HypE dehydrates its own carbamoyl moiety in an ATP-dependent process to yield the enzyme thiocyanate. The N-terminal domain of HypE is related to the ATP-binding domains of the AIR synthases, selenophosphate synthetase (SelD), and FGAM synthase and is thought to bind ATP.
Probab=94.36 E-value=0.016 Score=52.99 Aligned_cols=100 Identities=17% Similarity=0.194 Sum_probs=66.5
Q ss_pred EEEEEecCCCChhhHHHHHcCCCEEEeeCCCCC---CHHHHHHHHHHh--ccccCCCCceeeeccccccCCCCcCCCcEE
Q psy13615 42 IVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTL---ILSNSLQVMQKV--GAKYSDIAPFSQDGGETAELPGLYQPGDYD 116 (263)
Q Consensus 42 iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~---~~~~~~~i~~~l--~~~~~~~~~~~~~gge~~~l~~~~~~d~i~ 116 (263)
.+++..|+-.|.|.+ |.+++....+. +.++.+++++++ .|+. +++.++||.|...++.. .+.+.
T Consensus 62 av~~~~sDiaamGa~-------P~~~~~~l~lp~~~~~~~l~~~~~Gi~~~~~~---~g~~ivGGdt~~~~~~~-~~~~~ 130 (293)
T cd02197 62 AVCGTVNDLAMMGAK-------PLYLSLGFILEEGFPLEDLERIVKSMAEAARE---AGVKIVTGDTKVVPKGK-ADGIF 130 (293)
T ss_pred HHHhhHHHHHHcCCc-------chhheEEEECCCCCCHHHHHHHHHHHHHHHHH---cCCEEEeceeEeccCCc-cCceE
Confidence 344444444444444 87777766553 337888899988 6676 99999999999754421 23456
Q ss_pred EeeeeeEEeecCCcCCccccccCCcEEEEecCCCCCc
Q psy13615 117 LAGFAVGAVEKASLLPKVKDVAAGDVVIALPSSGIHS 153 (263)
Q Consensus 117 LAG~m~~~~~~~~~in~hpsl~~g~~ii~Lp~~G~~~ 153 (263)
+.+++.|.+++.+.+.. ...++||.|+..-..|.++
T Consensus 131 i~~t~~G~~~~~~~~~r-~~a~~GD~i~vtG~~G~~~ 166 (293)
T cd02197 131 INTTGIGVIPRGVIISP-SNIRPGDKIIVSGTIGDHG 166 (293)
T ss_pred EEEEEEEEEcCCccccc-cCCCCCCEEEEeCCccHHH
Confidence 77788888775554432 3458999998776666553
No 45
>cd02195 SelD Selenophosphate synthetase (SelD) catalyzes the conversion of selenium to selenophosphate which is required by a number of bacterial, archaeal and eukaryotic organisms for synthesis of Secys-tRNA, the precursor of selenocysteine in selenoenzymes. The N-terminal domain of SelD is related to the ATP-binding domains of hydrogen expression/formation protein HypE, the AIR synthases, and FGAM synthase and is thought to bind ATP.
Probab=94.02 E-value=0.014 Score=53.35 Aligned_cols=77 Identities=19% Similarity=0.152 Sum_probs=53.7
Q ss_pred CEEEeeCCCCC------CHHHHHHHHHHh--ccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEEeecCCcCCccc
Q psy13615 64 PTKVSTYKHTL------ILSNSLQVMQKV--GAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVK 135 (263)
Q Consensus 64 P~~~v~~~~~~------~~~~~~~i~~~l--~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~~~~~~~in~hp 135 (263)
|...+....+. +.++.+++++++ .|+. +++.++||+|...| ...+++++.|++++++++.. .
T Consensus 91 P~~~~~~l~lp~~~~~~~~~~l~~~~~Gi~~~~~~---~g~~ivGGdt~~~~------~~~i~~t~~G~~~~~~~~~~-~ 160 (287)
T cd02195 91 PLSALAIVTLPRKLPALQEEVLREILAGGKDKLRE---AGAVLVGGHTIEGP------EPKYGLSVTGLVHPNKILRN-S 160 (287)
T ss_pred HHHHHHHhcCCCccchhhHHHHHHHHHHHHHHHHH---cCCcEEeeeeccCC------CcEEEEEEEEEEcchheecC-C
Confidence 65554443332 337788888888 6677 99999999998754 34577788888876666554 5
Q ss_pred cccCCcEEEEecCCC
Q psy13615 136 DVAAGDVVIALPSSG 150 (263)
Q Consensus 136 sl~~g~~ii~Lp~~G 150 (263)
..++||.|+..-..|
T Consensus 161 ~a~~GD~I~ltg~lG 175 (287)
T cd02195 161 GAKPGDVLILTKPLG 175 (287)
T ss_pred CCCCCCEEEEcCCch
Confidence 567999998643333
No 46
>TIGR00476 selD selenium donor protein. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelD, known as selenophosphate synthetase, selenium donor protein, and selenide,water dikinase. SelD provides reduced selenium for the selenium transferase SelA. This protein itself contains selenocysteine in many species; any sequence not aligning to the beginning of the model is likely have selenocysteine residue incorrectly interpreted as a stop codon upstream of the given sequence. The SelD protein also provides selenophosphate for the enzyme tRNA 2-selenouridine synthase, which catalyz
Probab=93.28 E-value=0.14 Score=47.93 Aligned_cols=67 Identities=22% Similarity=0.282 Sum_probs=51.5
Q ss_pred HHHHHHHHHHh--ccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEEeecCCcCCccccccCCcEEEEecCCCCC
Q psy13615 76 LSNSLQVMQKV--GAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKDVAAGDVVIALPSSGIH 152 (263)
Q Consensus 76 ~~~~~~i~~~l--~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~~~~~~~in~hpsl~~g~~ii~Lp~~G~~ 152 (263)
.++.+++++++ +|++ +++.++||+|...|.. .+++++.++.++.+++.. ...++||.|+.....|.+
T Consensus 116 ~~~l~~i~~Gi~~~~~~---~g~~lvGGdT~~~~~~------~i~~t~~G~~~~~~~i~~-~~ak~GD~Iiltg~lG~~ 184 (347)
T TIGR00476 116 IEVMREVIQGFKDACRE---AGTSLTGGHTILNPWP------VFGGAVTGVCPEEEVITP-SGAQVGDVLILTKPLGTQ 184 (347)
T ss_pred HHHHHHHHHHHHHHHHH---cCCCeEeeeeecCCcC------EEEEEEEEEECccceecC-CCCCCCCEEEEECCccHH
Confidence 47888899988 6677 9999999999987632 356777777766666654 567899999988777764
No 47
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=93.27 E-value=0.3 Score=52.57 Aligned_cols=88 Identities=23% Similarity=0.303 Sum_probs=55.1
Q ss_pred ccceeEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEee
Q psy13615 155 GFSLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKR 234 (263)
Q Consensus 155 g~Sl~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~ 234 (263)
++++ .++.||..+...++. +| ....|...|.-....|..-++++..+++. ++..+++++ +.+.|...+
T Consensus 754 E~~V-d~i~dg~~v~i~~i~-e~----~e~~gv~sGds~~v~pp~~l~~~~~~~i~-~~a~ki~~~-----L~~~G~~ni 821 (1068)
T PRK12815 754 EYEV-DAISDGEDVTIPGII-EH----IEQAGVHSGDSIAVLPPQSLSEEQQEKIR-DYAIKIAKK-----LGFRGIMNI 821 (1068)
T ss_pred eEEE-EEEEcCCceEEeeEE-EE----eeccCCcCCCeeEEECCCCCCHHHHHHHH-HHHHHHHHH-----cCCccEEEE
Confidence 4665 377887766544444 46 33456667765555554445666666665 333344443 346799999
Q ss_pred ccccccCCceeeecCcceeeeeCCCCCC
Q psy13615 235 GFTEGTVTAKVFSSRNRREKEDNPEEGD 262 (263)
Q Consensus 235 gl~~~~~~~~~~~~~~~~~~e~n~~~gd 262 (263)
.++.++ .++.++|+|+|++.
T Consensus 822 qf~v~~--------~~~yviEiNpR~s~ 841 (1068)
T PRK12815 822 QFVLAN--------DEIYVLEVNPRASR 841 (1068)
T ss_pred EEEEEC--------CcEEEEEEeCCCCc
Confidence 998554 34578899999973
No 48
>PRK00943 selenophosphate synthetase; Provisional
Probab=92.99 E-value=0.047 Score=51.32 Aligned_cols=67 Identities=19% Similarity=0.264 Sum_probs=47.4
Q ss_pred HHHHHHHHHHh--ccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEEeecCCcCCccccccCCcEEEEecCCCCC
Q psy13615 76 LSNSLQVMQKV--GAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKDVAAGDVVIALPSSGIH 152 (263)
Q Consensus 76 ~~~~~~i~~~l--~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~~~~~~~in~hpsl~~g~~ii~Lp~~G~~ 152 (263)
.++.+++++++ .|+. +++.++||+|...|.. .+.+ .+.|.+++.+++.. ...++||+|+.--..|.+
T Consensus 115 ~~~l~~i~~Gi~~~~~~---~gv~lvGGdT~~~~~~----~i~~--t~~G~~~~~~~l~~-~~ak~GD~Iivtg~iG~~ 183 (347)
T PRK00943 115 PEVAREVLEGGRAACRQ---AGIPLAGGHSIDAPEP----IFGL--AVTGVVPPERVKRN-ATAQAGDKLFLTKPLGIG 183 (347)
T ss_pred HHHHHHHHHHHHHHHHH---cCCceecccccCCCCc----eEEE--EEEEEEcCCceeeC-CCCCCCCEEEEeCCccHH
Confidence 36788888888 6666 9999999999876522 3333 45666665666654 557899999876555543
No 49
>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.97 E-value=0.2 Score=44.14 Aligned_cols=56 Identities=29% Similarity=0.439 Sum_probs=43.5
Q ss_pred ccCCccEEEEEcCc-chhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEE
Q psy13615 7 MVQRKRVAVLISGT-GTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKV 67 (263)
Q Consensus 7 m~~~~riavl~SG~-Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~ 67 (263)
|.++.|+++..||+ ||.|-.=+ . ++++ +.+...++-=+|...|+.||.++|+|+.+
T Consensus 1 m~sk~kvaiigsgni~tdlm~k~--l--r~g~-~le~~~mvgidp~sdglaraarlgv~tt~ 57 (310)
T COG4569 1 MSSKRKVAIIGSGNIGTDLMIKI--L--RHGQ-HLEMAVMVGIDPQSDGLARAARLGVATTH 57 (310)
T ss_pred CCCcceEEEEccCcccHHHHHHH--H--hcCC-cccceeEEccCCCccHHHHHHhcCCcchh
Confidence 78899999999999 88665333 2 2232 35777788889999999999999999754
No 50
>PRK07206 hypothetical protein; Provisional
Probab=92.58 E-value=0.54 Score=44.65 Aligned_cols=34 Identities=15% Similarity=0.019 Sum_probs=23.6
Q ss_pred HHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCC
Q psy13615 219 KKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEG 261 (263)
Q Consensus 219 ~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~g 261 (263)
+.+...|+. .|...+.++.+ ..|++++|+|+|+|
T Consensus 256 ~~~~alg~~-~G~~h~E~~~~--------~~g~~liEin~R~~ 289 (416)
T PRK07206 256 QALDALGIK-NGPAHAEVMLT--------ADGPRLIEIGARLD 289 (416)
T ss_pred HHHHHcCCc-cCCceEEEEEc--------CCCCEEEEECCccC
Confidence 334344553 38888999844 44567889999997
No 51
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=92.53 E-value=0.36 Score=46.41 Aligned_cols=53 Identities=15% Similarity=0.121 Sum_probs=34.3
Q ss_pred CcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCC
Q psy13615 196 CPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEG 261 (263)
Q Consensus 196 ~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~g 261 (263)
+|.|..+++..++++ ++..+++ +.+.|.|+..+.++.+..+ .+.++|+|+|++
T Consensus 242 ~p~~~~~~~~~~~i~-~~a~~~~-----~~lg~~g~~~ve~~~~~~g-------~~~viEiN~R~~ 294 (450)
T PRK06111 242 APSPFLDEETRKAMG-ERAVQAA-----KAIGYTNAGTIEFLVDEQK-------NFYFLEMNTRLQ 294 (450)
T ss_pred cCCCCCCHHHHHHHH-HHHHHHH-----HHcCCCCceeEEEEEcCCC-------CEEEEEEECCcC
Confidence 466666776666664 3332333 3456788888999954432 157899999995
No 52
>cd02691 PurM-like2 AIR synthase (PurM) related protein, archaeal subgroup 2 of unknown function. The family of PurM related proteins includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM synthase and Selenophosphate synthetase (SelD). They all contain two conserved domains and seem to dimerize. The N-terminal domain forms the dimer interface and is a putative ATP binding domain.
Probab=92.22 E-value=0.054 Score=51.01 Aligned_cols=67 Identities=15% Similarity=0.119 Sum_probs=47.2
Q ss_pred HHHHHHHHHHh--ccccCCCCceeeeccccccCCCCcC-CCcEEEeeeeeEEeecCCcCCccccccCCcEEEEec
Q psy13615 76 LSNSLQVMQKV--GAKYSDIAPFSQDGGETAELPGLYQ-PGDYDLAGFAVGAVEKASLLPKVKDVAAGDVVIALP 147 (263)
Q Consensus 76 ~~~~~~i~~~l--~~~~~~~~~~~~~gge~~~l~~~~~-~d~i~LAG~m~~~~~~~~~in~hpsl~~g~~ii~Lp 147 (263)
.++.+++++++ .|+. +++.++||+|...|+.+. .+.++++.++.|..++ ..+.. ...++||.|+.--
T Consensus 101 ~~~l~~i~~Gi~~a~~~---~gv~lvGGdT~~~~~~~~~~~~l~~svT~iG~~~~-~~~~r-~gA~pGD~I~vtg 170 (346)
T cd02691 101 VGKLFDFTAGVTAVSEA---TGVPLVAGSTLRIGGDMVLGDRLVGGVGAVGRSKS-DPSRR-KNAEPGDLILMTE 170 (346)
T ss_pred HHHHHHHHHHHHHHHHH---cCCeEEeeeeEEecCCcccCCceEEEEEEEEEecc-ccccc-cCCCCCCEEEEEC
Confidence 47788888888 6676 999999999988766642 2345566667776653 22222 5678999998653
No 53
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=92.22 E-value=0.54 Score=50.58 Aligned_cols=87 Identities=20% Similarity=0.235 Sum_probs=54.0
Q ss_pred ccceeEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEee
Q psy13615 155 GFSLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKR 234 (263)
Q Consensus 155 g~Sl~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~ 234 (263)
++++ .++.+|..+...++. .| ....|..+|.-....|...++++..+++. ++..+++++| .+.|...+
T Consensus 756 E~sV-~~v~dg~~v~i~~i~-e~----i~~~gv~~Gds~~~~p~~~l~~~~~~~i~-~~a~~i~~aL-----g~~G~~~v 823 (1066)
T PRK05294 756 EVDV-DAICDGEDVLIGGIM-EH----IEEAGVHSGDSACSLPPQTLSEEIIEEIR-EYTKKLALEL-----NVVGLMNV 823 (1066)
T ss_pred EEEE-EEEecCCeEEEeeeE-Ee----eeeccccCCCCcEEecCCCCCHHHHHHHH-HHHHHHHHHc-----CCeeeEEE
Confidence 4665 367787766555555 34 22345666665555554345666666664 4444444433 46799999
Q ss_pred ccccccCCceeeecCcceeeeeCCCCC
Q psy13615 235 GFTEGTVTAKVFSSRNRREKEDNPEEG 261 (263)
Q Consensus 235 gl~~~~~~~~~~~~~~~~~~e~n~~~g 261 (263)
.++.+ ..++.|+|+|+|++
T Consensus 824 qf~~~--------~~~~yViEiNpR~s 842 (1066)
T PRK05294 824 QFAVK--------DDEVYVIEVNPRAS 842 (1066)
T ss_pred EEEEE--------CCeEEEEEEecCCC
Confidence 99954 34567889999986
No 54
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []. This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A.
Probab=91.95 E-value=0.25 Score=41.05 Aligned_cols=37 Identities=16% Similarity=0.106 Sum_probs=22.6
Q ss_pred HHHHHHHhcCC-CeEEEEeeccccccCCceeeecCcceeeeeCCCCC
Q psy13615 216 RVIKKMIAEGT-PFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEG 261 (263)
Q Consensus 216 ~~i~~~~~eg~-~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~g 261 (263)
...+.+. +-+ .+.|..-++|+.++ .++.|+|+|+||+
T Consensus 122 ~~~~~i~-~~l~gl~G~~giD~I~~~--------~~~~viEINPR~t 159 (161)
T PF02655_consen 122 ELARRIA-EALPGLRGYVGIDFILDD--------GGPYVIEINPRFT 159 (161)
T ss_dssp HHHHHHH-TTSTT--EEEEEEEEESS---------SEEEEEEESS--
T ss_pred HHHHHHH-HHcCCCeeeEeEEEEEeC--------CcEEEEEEcCCCC
Confidence 3344442 344 79999999999554 5556889999996
No 55
>cd00396 PurM-like AIR (aminoimidazole ribonucleotide) synthase related protein. This family includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM (formylglycinamidine ribonucleotide) synthase and Selenophosphate synthetase (SelD). The N-terminal domain of AIR synthase forms the dimer interface of the protein, and is suggested as a putative ATP binding domain.
Probab=91.90 E-value=0.13 Score=44.64 Aligned_cols=78 Identities=26% Similarity=0.302 Sum_probs=51.4
Q ss_pred CEEEeeCCCCC---CHHHHHHHHHHh--ccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEEeecCCcCCcccccc
Q psy13615 64 PTKVSTYKHTL---ILSNSLQVMQKV--GAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKDVA 138 (263)
Q Consensus 64 P~~~v~~~~~~---~~~~~~~i~~~l--~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~~~~~~~in~hpsl~ 138 (263)
|....+...++ +.+..+++++++ .|++ +++.++||+|..-++. ..+...+.+++.|.+++.+.+.. ...+
T Consensus 39 P~~~~~~l~~~~~~~~~~~~~~~~Gi~~~~~~---~gi~ivgG~t~~~~~~-~~~~~~i~~t~~G~~~~~~~~~~-~~~~ 113 (222)
T cd00396 39 PIALLASLSLSNGLEVDILEDVVDGVAEACNQ---LGVPIVGGHTSVSPGT-MGHKLSLAVFAIGVVEKDRVIDS-SGAR 113 (222)
T ss_pred cHHHhhheccCCCCCHHHHHHHHHHHHHHHHH---cCCeEeceeeEEccCC-cCCCceEEEEEEEEecCCccccc-cCCC
Confidence 54444443332 236778888888 6666 9999999999887665 23345667777887764444321 3457
Q ss_pred CCcEEEEe
Q psy13615 139 AGDVVIAL 146 (263)
Q Consensus 139 ~g~~ii~L 146 (263)
+||.|+..
T Consensus 114 ~Gd~lv~~ 121 (222)
T cd00396 114 PGDVLILT 121 (222)
T ss_pred CCCEEEEe
Confidence 99999863
No 56
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=91.71 E-value=0.57 Score=50.40 Aligned_cols=89 Identities=18% Similarity=0.232 Sum_probs=57.4
Q ss_pred ccccceeEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEE
Q psy13615 153 SNGFSLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEK 232 (263)
Q Consensus 153 ~~g~Sl~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L 232 (263)
+.++++ .++.++..+...+++ .| ....|..+|......|...++++..+++. ++..++.++| .+.|..
T Consensus 754 G~E~~V-d~l~d~g~v~i~~i~-e~----~~~~gv~sGds~~~~P~~~l~~~~~~~i~-~~a~ki~~aL-----gi~G~~ 821 (1050)
T TIGR01369 754 AVEVDV-DAVSDGEEVLIPGIM-EH----IEEAGVHSGDSTCVLPPQTLSAEIVDRIK-DIVRKIAKEL-----NVKGLM 821 (1050)
T ss_pred CeEEEE-EEEEeCCEEEEEEEE-Ee----ecccCCcCCCceEEecCCCCCHHHHHHHH-HHHHHHHHHC-----CCcceE
Confidence 344665 377887666665555 35 23456777776666666556777666664 4444444443 357999
Q ss_pred eeccccccCCceeeecCcceeeeeCCCCC
Q psy13615 233 KRGFTEGTVTAKVFSSRNRREKEDNPEEG 261 (263)
Q Consensus 233 ~~gl~~~~~~~~~~~~~~~~~~e~n~~~g 261 (263)
.+.++.++ .++.++|+|+|++
T Consensus 822 ~vqf~~~~--------~~~yvIEvNpR~s 842 (1050)
T TIGR01369 822 NIQFAVKD--------GEVYVIEVNPRAS 842 (1050)
T ss_pred EEEEEEEC--------CeEEEEEEeCCCC
Confidence 99999543 4567889999985
No 57
>PRK05731 thiamine monophosphate kinase; Provisional
Probab=91.45 E-value=0.083 Score=48.70 Aligned_cols=83 Identities=18% Similarity=0.122 Sum_probs=56.0
Q ss_pred CCEEEeeCCCCC---CHHHHHHHHHHh--ccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEEeecCCcCCccccc
Q psy13615 63 IPTKVSTYKHTL---ILSNSLQVMQKV--GAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKDV 137 (263)
Q Consensus 63 IP~~~v~~~~~~---~~~~~~~i~~~l--~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~~~~~~~in~hpsl 137 (263)
-|..++...... +.+..+++++++ .|+. +++.++||.|..-|. ..++.++.|++++.+.+.. ...
T Consensus 80 ~P~~~~~~l~~p~~~~~~~l~~i~~Gi~~~~~~---~g~~ivGG~t~~~~~------~~i~vt~iG~~~~~~~~~~-~~a 149 (318)
T PRK05731 80 RPAAFLLALALPKDLDEAWLEALADGLFELADR---YGAELIGGDTTRGPD------LSISVTAIGDVPGGRALRR-SGA 149 (318)
T ss_pred CcceEEEEEEcCCCCCHHHHHHHHHHHHHHHHH---hCCeEECcccCCCCC------cEEEEEEEEEcCCCCcccc-cCC
Confidence 376666544333 346788888888 6666 999999999985432 4456677887765544443 345
Q ss_pred cCCcEEEEecCCCCCccc
Q psy13615 138 AAGDVVIALPSSGIHSNG 155 (263)
Q Consensus 138 ~~g~~ii~Lp~~G~~~~g 155 (263)
++||.|+..-..|.++.+
T Consensus 150 ~~Gd~i~ltg~~G~~~~g 167 (318)
T PRK05731 150 KPGDLVAVTGTLGDSAAG 167 (318)
T ss_pred CCCCEEEEECCccHHHHH
Confidence 799999877666666544
No 58
>cd02192 PurM-like3 AIR synthase (PurM) related protein, subgroup 3 of unknown function. The family of PurM related proteins includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM synthase and Selenophosphate synthetase (SelD). They all contain two conserved domains and seem to dimerize. The N-terminal domain forms the dimer interface and is a putative ATP binding domain.
Probab=91.31 E-value=0.16 Score=46.35 Aligned_cols=87 Identities=21% Similarity=0.154 Sum_probs=59.3
Q ss_pred EEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCHHHHHHHHHHh--ccccCCCCceeeeccccccCCCCcCCCcEEEeee
Q psy13615 43 VLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLILSNSLQVMQKV--GAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGF 120 (263)
Q Consensus 43 v~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~~~~~~i~~~l--~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~ 120 (263)
+++..|+..|.|.+ |..++....+.+.++.+++++++ .|+. +++.++||+|.. +. ..-.+...
T Consensus 72 v~~~vsDiaa~Ga~-------P~~~~~~l~~p~~e~l~~i~~Gi~~a~~~---~gi~ivGGdt~~----~~-~~~~i~vt 136 (283)
T cd02192 72 VLVNVSDIAAMGGR-------PLAMVDALWSPSAEAAAQVLEGMRDAAEK---FGVPIVGGHTHP----DS-PYNALSVA 136 (283)
T ss_pred HHHHHHHHHhcCCE-------eeeeeeeecCCCHHHHHHHHHHHHHHHHH---cCCcEecccCCC----CC-CCCeEEEE
Confidence 33444444445544 98888888777778889999988 6677 999999999963 11 11134455
Q ss_pred eeEEeecCCcCCccccccCCcEEEEe
Q psy13615 121 AVGAVEKASLLPKVKDVAAGDVVIAL 146 (263)
Q Consensus 121 m~~~~~~~~~in~hpsl~~g~~ii~L 146 (263)
+.|.+++.+.+ . ...++||.|+..
T Consensus 137 ~iG~~~~~~~~-r-~~a~~GD~I~vt 160 (283)
T cd02192 137 ILGRARKDLLI-S-FGAKPGDRLILA 160 (283)
T ss_pred EEEEEcCCccc-c-CCCCCCCEEEEE
Confidence 67777655544 3 556899999865
No 59
>cd02194 ThiL ThiL (Thiamine-monophosphate kinase) plays a dual role in de novo biosynthesis and in salvage of exogenous thiamine. Thiamine salvage occurs in two steps, with thiamine kinase catalyzing the formation of thiamine phosphate, and ThiL catalyzing the conversion of this intermediate to thiamine pyrophosphate. The N-terminal domain of ThiL binds ATP and is related to the ATP-binding domains of hydrogen expression/formation protein HypE, the AIR synthases, FGAM synthase and selenophosphate synthetase (SelD).
Probab=91.17 E-value=0.45 Score=43.21 Aligned_cols=86 Identities=17% Similarity=0.145 Sum_probs=60.2
Q ss_pred CCCEEEeeCCCCCC---HHHHHHHHHHh--ccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEEeecCCcCCcccc
Q psy13615 62 GIPTKVSTYKHTLI---LSNSLQVMQKV--GAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKD 136 (263)
Q Consensus 62 gIP~~~v~~~~~~~---~~~~~~i~~~l--~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~~~~~~~in~hps 136 (263)
+-|...+....+.+ .++.+++++++ +|+. +++.++||+|..-+ ...+++++.|..++.+.+.. ..
T Consensus 76 a~P~~~~~~l~~p~~~~~~~l~~i~~Gi~~a~~~---~g~~liGGdt~~~~------~~~i~vt~iG~~~~~~~~~~-~~ 145 (291)
T cd02194 76 ARPLGFLLSLGLPPDTDEEWLEEFYRGLAEAADR---YGVPLVGGDTTSGS------ELVISVTALGEVEKGKPLRR-SG 145 (291)
T ss_pred CccceeEEEEECCCCCCHHHHHHHHHHHHHHHHH---cCCeEEcccCCCCC------CeEEEEEEEEecCCCCceec-CC
Confidence 44877776655543 47888888888 6677 99999999997632 45566777887764445544 44
Q ss_pred ccCCcEEEEecCCCCCccccc
Q psy13615 137 VAAGDVVIALPSSGIHSNGFS 157 (263)
Q Consensus 137 l~~g~~ii~Lp~~G~~~~g~S 157 (263)
.++||.|+..-..|.++.++.
T Consensus 146 a~~GD~I~ltg~~G~~~~g~~ 166 (291)
T cd02194 146 AKPGDLLYVTGTLGDAAAGLA 166 (291)
T ss_pred CCCCCEEEEeCCccHHHHHHH
Confidence 579999987766676655443
No 60
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=91.10 E-value=1.4 Score=41.66 Aligned_cols=57 Identities=16% Similarity=0.232 Sum_probs=36.9
Q ss_pred CeeEE--CcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCc-ceeeeeCCCCCC
Q psy13615 191 GMGAY--CPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRN-RREKEDNPEEGD 262 (263)
Q Consensus 191 gmga~--~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~-~~~~e~n~~~gd 262 (263)
|+..+ .|.. .+++..++++ ++...+++.| .|.|++.+.|+.+. .| +.|+|+|+|++.
T Consensus 210 gi~~~~~~pa~-~~~~~~~~~~-~~a~~i~~~L-----~~~G~~~vEff~~~--------dg~~~v~EinpR~~~ 269 (372)
T PRK06019 210 GILRTSIAPAR-ISAELQAQAE-EIASRIAEEL-----DYVGVLAVEFFVTG--------DGELLVNEIAPRPHN 269 (372)
T ss_pred CEEEEEECCCC-CCHHHHHHHH-HHHHHHHHHc-----CccceeEEEEEEcC--------CCeEEEEEecCCccC
Confidence 45443 4443 4566666663 5555555544 47899999999543 33 568999999974
No 61
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=90.81 E-value=1.1 Score=40.63 Aligned_cols=64 Identities=19% Similarity=0.276 Sum_probs=41.8
Q ss_pred CCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCC
Q psy13615 184 DKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEG 261 (263)
Q Consensus 184 d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~g 261 (263)
+....+|+....+|. ..+++..++++ ++...+++.+ + +.|...+.++.+..| .+.|+|+|+|+|
T Consensus 208 ~~~~~~g~~~~~~p~-~~~~~~~~~l~-~~a~~~~~~l---g--~~g~~~iD~~~~~~g-------~~~viEvN~~p~ 271 (304)
T PRK01372 208 EAKYLAGGTQYICPA-GLPAEIEAELQ-ELALKAYRAL---G--CRGWGRVDFMLDEDG-------KPYLLEVNTQPG 271 (304)
T ss_pred eccccCCCeEEEeCC-CCCHHHHHHHH-HHHHHHHHHh---C--CcceEEEEEEEcCCC-------CEEEEEecCCCC
Confidence 345667777777765 35667666664 4444444443 4 568888999965533 246889999987
No 62
>TIGR01379 thiL thiamine-monophosphate kinase. Proteins scoring between the trusted and noise cutoff for this model include short forms from the Thermoplasmas (which lack the N-terminal region) and a highly derived form from Campylobacter jejuni. Eukaryotes lack this enzyme, and add pyrophosphate from ATP to unphosphorylated thiamine in a single step.
Probab=90.44 E-value=0.2 Score=46.26 Aligned_cols=85 Identities=19% Similarity=0.154 Sum_probs=57.5
Q ss_pred CCCEEEeeCCCCC---CHHHHHHHHHHh--ccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEEeecCCcCCcccc
Q psy13615 62 GIPTKVSTYKHTL---ILSNSLQVMQKV--GAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKD 136 (263)
Q Consensus 62 gIP~~~v~~~~~~---~~~~~~~i~~~l--~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~~~~~~~in~hps 136 (263)
+-|...+...... +....+++++++ +|+. +++.++||.|..-+ ...+.+.+.|..+..+.+.. ..
T Consensus 77 a~P~~~~~~~~~P~~~~~~~l~~i~~Gi~~a~~~---~g~~ivGG~t~~~~------~~~i~vt~iG~~~~~~~~~~-~~ 146 (317)
T TIGR01379 77 ATPKWFLLSLGLPSDLDEAWLEAFYDGLFECAKQ---YGVPLVGGDTVSSP------ELVVTVTAIGEAPKGRALLR-SG 146 (317)
T ss_pred CcccEEEEEEEcCCCCCHHHHHHHHHHHHHHHHH---cCCeEECccCCCCC------CcEEEEEEEEEeCCCCceec-CC
Confidence 3476665433332 235678888888 6676 99999999998643 24455667787765555554 44
Q ss_pred ccCCcEEEEecCCCCCcccc
Q psy13615 137 VAAGDVVIALPSSGIHSNGF 156 (263)
Q Consensus 137 l~~g~~ii~Lp~~G~~~~g~ 156 (263)
.++||.|+..-..|.++.++
T Consensus 147 a~~Gd~I~ltg~~G~~~~~~ 166 (317)
T TIGR01379 147 AKPGDLVFVTGTLGDSAAGL 166 (317)
T ss_pred CCCCCEEEEcCchhHHHHHH
Confidence 58999999877777766543
No 63
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=90.30 E-value=1.4 Score=40.03 Aligned_cols=66 Identities=18% Similarity=0.201 Sum_probs=39.2
Q ss_pred CCCCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCC
Q psy13615 182 NNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEG 261 (263)
Q Consensus 182 ~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~g 261 (263)
..+.....|+.....|.+ .+++..++++ ++..++.++| + +.|..-+.++.+..+ .+.++|+|+++|
T Consensus 221 ~~~~~~~~~~~~~~~p~~-l~~~~~~~i~-~~a~~~~~~l---g--~~G~~~vD~~~~~~g-------~~~viEvN~~pg 286 (315)
T TIGR01205 221 DYEAKYLDGSTEYVIPAP-LDEELEEKIK-ELALKAYKAL---G--CRGLARVDFFLDEEG-------EIYLNEINTIPG 286 (315)
T ss_pred CcccccCCCCeeEEeCCC-CCHHHHHHHH-HHHHHHHHHh---C--CCceEEEEEEEeCCC-------CEEEEEeeCCCC
Confidence 334444455554545554 4666666664 4444444544 3 358888888854332 257899999987
No 64
>TIGR03267 methan_mark_2 putative methanogenesis marker protein 2. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. Sequence similarity to various bacterial proteins is reflected in Pfam models pfam00586 and pfam02769, AIR synthase related protein N-terminal and C-terminal domains, respectively. The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=89.85 E-value=0.18 Score=46.85 Aligned_cols=91 Identities=21% Similarity=0.183 Sum_probs=59.9
Q ss_pred ceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCHHHHHHHHHHh--ccccCCCCceeeeccccccCCCCcCCCcEEE
Q psy13615 40 AEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLILSNSLQVMQKV--GAKYSDIAPFSQDGGETAELPGLYQPGDYDL 117 (263)
Q Consensus 40 ~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~~~~~~i~~~l--~~~~~~~~~~~~~gge~~~l~~~~~~d~i~L 117 (263)
...+.+..|+..|.|.+ |..++....+.+.++.+++++++ +|+. +++.++||.|..- .-| ..+
T Consensus 79 ~~av~~nlsDiaamGa~-------P~~~~~~L~~~~~~~l~~~~~Gi~~a~~~---~gi~ivGGdT~~~-~~~----~~i 143 (323)
T TIGR03267 79 YCAVLVNVNDIAAMGGK-------PVGMVNVLSINDVDVCREVLEGMREGAWK---FGVPVVGGHTHPD-TPY----NAL 143 (323)
T ss_pred HHhhhhhhhhHHhcCCE-------ehhHhhhhcCCCHHHHHHHHHHHHHHHHH---cCCCEEccccCCC-CCc----cee
Confidence 44555666666666655 87776666666667788888888 6676 9999999999531 112 123
Q ss_pred eeeeeEEeecCCcCCccccccCCcEEEEe
Q psy13615 118 AGFAVGAVEKASLLPKVKDVAAGDVVIAL 146 (263)
Q Consensus 118 AG~m~~~~~~~~~in~hpsl~~g~~ii~L 146 (263)
..++.|..++.+++.. ...++||.|+..
T Consensus 144 ~vt~iG~~~~~~~~~r-~~a~~GD~I~vt 171 (323)
T TIGR03267 144 DVAIVGIAKEDCIIRS-DTAKPGDLIIFA 171 (323)
T ss_pred eEEEEEEEcCcceeeC-CCCCCCCEEEEE
Confidence 4456666665555544 445799999743
No 65
>PRK02186 argininosuccinate lyase; Provisional
Probab=89.78 E-value=1.5 Score=46.31 Aligned_cols=99 Identities=17% Similarity=0.236 Sum_probs=54.1
Q ss_pred CcEEEEecCCCCCccccceeEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHH
Q psy13615 140 GDVVIALPSSGIHSNGFSLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIK 219 (263)
Q Consensus 140 g~~ii~Lp~~G~~~~g~Sl~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~ 219 (263)
++++|+-.-.|. ++++. .+.++.+..+.+++..+ ....+..-.++...|.+ .+++..+++. ++..++++
T Consensus 180 ~~~lvEEfI~G~---E~sVe-~i~~~g~~~i~~i~~k~-----~~~~~~~ve~g~~~P~~-l~~~~~~~l~-~~~~~~l~ 248 (887)
T PRK02186 180 RAALVQAYVEGD---EYSVE-TLTVARGHQVLGITRKH-----LGPPPHFVEIGHDFPAP-LSAPQRERIV-RTVLRALD 248 (887)
T ss_pred CcEEEeecccCC---cEEEE-EEEECCcEEEEEEEeee-----cCCCCCeEEeccccCCC-CCHHHHHHHH-HHHHHHHH
Confidence 455554444553 47763 55655556666666422 11222222223344554 3555555553 44444444
Q ss_pred HHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCC
Q psy13615 220 KMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEG 261 (263)
Q Consensus 220 ~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~g 261 (263)
++ |+. .|...+.++.+ ..++.++|+|+|+|
T Consensus 249 aL---G~~-~G~~hvE~~~t--------~~g~~liEIn~R~~ 278 (887)
T PRK02186 249 AV---GYA-FGPAHTELRVR--------GDTVVIIEINPRLA 278 (887)
T ss_pred Hc---CCC-cCceEEEEEEE--------CCCEEEEEECCCCC
Confidence 43 544 48888888844 34567899999986
No 66
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=89.30 E-value=1.9 Score=46.53 Aligned_cols=102 Identities=16% Similarity=0.206 Sum_probs=61.1
Q ss_pred CcEEEEecCCCCCccccceeEEEecCcce-eecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHH
Q psy13615 140 GDVVIALPSSGIHSNGFSLVLCFTDGKTV-KVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVI 218 (263)
Q Consensus 140 g~~ii~Lp~~G~~~~g~Sl~~ai~dg~~~-~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i 218 (263)
++++|+-.-.|. .++++. .+.|+++. ...+....+ .+.|..||.....+|...++++..++++ ++..+++
T Consensus 202 ~~vLVEe~I~G~--~E~sv~-v~rD~~g~~~~~~~~e~~-----~p~gi~tG~s~~v~Pa~~l~~~~~~~l~-~~a~ki~ 272 (1068)
T PRK12815 202 HQCLLEESIAGW--KEIEYE-VMRDRNGNCITVCNMENI-----DPVGIHTGDSIVVAPSQTLTDDEYQMLR-SASLKII 272 (1068)
T ss_pred CeEEEEEccCCC--eEEEEE-EEEcCCCCEEEEEeceec-----ccccccCCceEEEecCCCCCHHHHHHHH-HHHHHHH
Confidence 345554333442 246653 55554443 233333211 2457788888887787667777777765 5555555
Q ss_pred HHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCC
Q psy13615 219 KKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEG 261 (263)
Q Consensus 219 ~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~g 261 (263)
+.| + ++|..-+.++.+..+. .+.|+|+|+|+.
T Consensus 273 ~~L---g--~~G~~~vef~l~~~~g------~~~ViEINPR~~ 304 (1068)
T PRK12815 273 SAL---G--VVGGCNIQFALDPKSK------QYYLIEVNPRVS 304 (1068)
T ss_pred HHc---C--CCCceEEEEEEECCCC------cEEEEEEecCcc
Confidence 554 3 5899999999543322 257899999985
No 67
>PRK14105 selenophosphate synthetase; Provisional
Probab=89.06 E-value=0.65 Score=43.50 Aligned_cols=67 Identities=21% Similarity=0.240 Sum_probs=48.5
Q ss_pred HHHHHHHHHHh--ccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEEeecCCcCCccccccCCcEEEEecCCCCC
Q psy13615 76 LSNSLQVMQKV--GAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKDVAAGDVVIALPSSGIH 152 (263)
Q Consensus 76 ~~~~~~i~~~l--~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~~~~~~~in~hpsl~~g~~ii~Lp~~G~~ 152 (263)
.++.+++++++ .|++ +++.++||+|..-|. -.+++.+.++.++.+++.. ...++||+|+.--..|.|
T Consensus 112 ~~~l~~i~~Gi~~~~~~---~gv~lvGGdT~~~~~------~~l~~svtg~g~~~~~i~r-~ga~~GD~I~vTg~lG~~ 180 (345)
T PRK14105 112 IEVAKEMLQGFQDFCRE---NDTTIIGGHTILNPW------PLIGGAVTGVGKEEDILTK-AGAKEGDVLILTKPLGTQ 180 (345)
T ss_pred HHHHHHHHHHHHHHHHH---hCCEEEeeeeccCCC------CEEEEEEEEEEcccceeeC-CCCCCCCEEEEeCCChHH
Confidence 47888888888 6666 999999999987542 2255666666655556554 557899999877666655
No 68
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=88.83 E-value=1.2 Score=40.94 Aligned_cols=51 Identities=37% Similarity=0.560 Sum_probs=39.5
Q ss_pred CccEEEEEcCc-chhH-HHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEE
Q psy13615 10 RKRVAVLISGT-GTNL-KSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKV 67 (263)
Q Consensus 10 ~~riavl~SG~-Gsnl-~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~ 67 (263)
+.|++++.+|+ |+.+ ..+++ .. ..++++|+.-+++..++++|+++|+|+++
T Consensus 1 klrVAIIG~G~IG~~h~~~ll~-----~~--~~elvaV~d~d~es~~la~A~~~Gi~~~~ 53 (285)
T TIGR03215 1 KVKVAIIGSGNIGTDLMYKLLR-----SE--HLEMVAMVGIDPESDGLARARELGVKTSA 53 (285)
T ss_pred CcEEEEEeCcHHHHHHHHHHHh-----CC--CcEEEEEEeCCcccHHHHHHHHCCCCEEE
Confidence 35899999998 8765 44441 12 46899988888888888999999999876
No 69
>COG0309 HypE Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=87.86 E-value=1.4 Score=41.40 Aligned_cols=99 Identities=25% Similarity=0.319 Sum_probs=64.4
Q ss_pred eEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCC---CHHHHHHHHHHh--ccccCCCCceeeeccccccCCCCcCCCcE
Q psy13615 41 EIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTL---ILSNSLQVMQKV--GAKYSDIAPFSQDGGETAELPGLYQPGDY 115 (263)
Q Consensus 41 ~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~---~~~~~~~i~~~l--~~~~~~~~~~~~~gge~~~l~~~~~~d~i 115 (263)
=-+++-+|+-...|++ |-+.....-.. +.+..+++++.+ .|+. .|+++++|-|...|+.-.+.++
T Consensus 73 lAV~gt~NDlav~GA~-------P~~l~~~lil~eg~~~e~l~~i~~si~e~a~~---~Gv~IvtGdTkV~~~~~~~~vi 142 (339)
T COG0309 73 LAVHGTANDVAVSGAK-------PRYLSVGLILPEGLPIEDLERILKSIDEEAEE---AGVSIVTGDTKVVPGGKDPIVI 142 (339)
T ss_pred EEEEEehhhhhhcCCC-------ceeeeEeEecCCCCCHHHHHHHHHHHHHHHHH---cCCeEEccCceeecCCCCCcEE
Confidence 3466667776667766 65543322211 236777888877 3344 9999999999999888655566
Q ss_pred EEeeeeeEEeecCCcCCcccc-ccCCcEEEEecCCCCCc
Q psy13615 116 DLAGFAVGAVEKASLLPKVKD-VAAGDVVIALPSSGIHS 153 (263)
Q Consensus 116 ~LAG~m~~~~~~~~~in~hps-l~~g~~ii~Lp~~G~~~ 153 (263)
..+| .|+..++..+. |+ +++||.||.--+.|.|+
T Consensus 143 ~tt~--iG~~~~~~~v~--~~~~~~GD~vI~tg~~g~hg 177 (339)
T COG0309 143 NTTG--IGIIDKEILVS--PSGARPGDAVIVTGTIGIHG 177 (339)
T ss_pred Eeee--EEeecCCcccc--cCCCCCCCEEEEcCChhHHH
Confidence 6654 55555343333 44 79999998765566664
No 70
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=87.80 E-value=1 Score=39.50 Aligned_cols=84 Identities=14% Similarity=0.197 Sum_probs=52.7
Q ss_pred EEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccc
Q psy13615 160 LCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEG 239 (263)
Q Consensus 160 ~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~ 239 (263)
+.+.|+.+..+....++| .... ++|-....+|.+.++++..++|. +.-..+. ..+.|.|..-+.|...
T Consensus 98 qvi~D~~gn~~~~~~~e~----~~~~--hs~dsi~~~P~~~L~~~~~~~l~-~~a~~ia-----~~l~~~G~~tvef~~~ 165 (211)
T PF02786_consen 98 QVIRDGKGNVVHLGEREC----SEQR--HSQDSIEEAPAQTLSDEERQKLR-EAAKKIA-----RALGYVGAGTVEFAVD 165 (211)
T ss_dssp EEEEETTSEEEEEEEEEE----EEEE--TTEEEEEEES-SSS-HHHHHHHH-HHHHHHH-----HHTT-EEEEEEEEEEE
T ss_pred hhhhccccceeeeeeecc----cccc--ccccceeEeeccccchHHHHHHH-HHHHHHH-----HhhCeeecceEEEEEc
Confidence 367777765544445555 1111 77778889999999999888876 2222222 3456899999999965
Q ss_pred cCCceeeecCcceeeeeCCCCC
Q psy13615 240 TVTAKVFSSRNRREKEDNPEEG 261 (263)
Q Consensus 240 ~~~~~~~~~~~~~~~e~n~~~g 261 (263)
..+. ..-++|.|+|+-
T Consensus 166 ~~~~------~~y~lEvNpR~~ 181 (211)
T PF02786_consen 166 PDDG------EFYFLEVNPRLQ 181 (211)
T ss_dssp TTTT------EEEEEEEESS--
T ss_pred cCcc------ceeeecccCCCC
Confidence 4333 346999999963
No 71
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=86.88 E-value=3.6 Score=37.37 Aligned_cols=91 Identities=16% Similarity=0.138 Sum_probs=46.4
Q ss_pred cccceeEEEecCcceeecCCcccc-c-cccCCCCCCCCCCeeE-ECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEE
Q psy13615 154 NGFSLVLCFTDGKTVKVMPPSQDH-K-RKYNNDKGPNTGGMGA-YCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVG 230 (263)
Q Consensus 154 ~g~Sl~~ai~dg~~~~~~~~t~dh-k-r~~~~d~G~dTGgmga-~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G 230 (263)
.++++. .+.++.+...+|++..+ + +.++-+... ++|... ..|.+ ++++..++++ ++..++.+++ | +.|
T Consensus 173 ~E~sv~-vl~~~~~~~vl~~~e~~~~~~~~~~~~k~-~~g~~~~~~p~~-l~~~~~~~i~-~~a~~~~~~l---g--~~g 243 (299)
T PRK14571 173 REMTVS-ILETEKGFEVLPILELRPKRRFYDYVAKY-TKGETEFILPAP-LNPEEERLVK-ETALKAFVEA---G--CRG 243 (299)
T ss_pred eEEEEE-EEcCCCCeeeeceEEEecCCCcccccccc-CCCCeeEEeCCC-CCHHHHHHHH-HHHHHHHHHh---C--CCc
Confidence 456652 33344445567766421 1 121111222 233333 23554 4666666664 3443444433 4 457
Q ss_pred EEeeccccccCCceeeecCcceeeeeCCCCC
Q psy13615 231 EKKRGFTEGTVTAKVFSSRNRREKEDNPEEG 261 (263)
Q Consensus 231 ~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~g 261 (263)
+.-+.++.+. .++.|+|+|.++|
T Consensus 244 ~~rvD~~~~~--------~~~~viEiN~~Pg 266 (299)
T PRK14571 244 FGRVDGIFSD--------GRFYFLEINTVPG 266 (299)
T ss_pred eEEEEEEEEC--------CcEEEEEeeCCCC
Confidence 7777777432 3457889999997
No 72
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=86.60 E-value=4.8 Score=38.88 Aligned_cols=57 Identities=14% Similarity=0.101 Sum_probs=35.5
Q ss_pred eeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCC
Q psy13615 192 MGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEG 261 (263)
Q Consensus 192 mga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~g 261 (263)
.....|.+.++++..+++. +....+++ .-+ |.|...+.++.+..+ .+.++|+|+|++
T Consensus 238 ~~~~~p~~~l~~~~~~~i~-~~a~~~~~---~lg--~~G~~~vef~~~~~g-------~~~viEiNpR~~ 294 (449)
T TIGR00514 238 LLEEAPSPALTPELRRKMG-DAAVKAAV---SIG--YRGAGTVEFLLDKNG-------EFYFMEMNTRIQ 294 (449)
T ss_pred eEEECCCCCCCHHHHHHHH-HHHHHHHH---HCC--CcceEEEEEEEeCCC-------CEEEEEEECCCC
Confidence 4455666666776665554 33323333 334 579999999955322 246889999995
No 73
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=85.46 E-value=3.2 Score=44.75 Aligned_cols=65 Identities=18% Similarity=0.227 Sum_probs=45.0
Q ss_pred CCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeE-EEEeeccccccCCceeeecCcceeeeeCCCCC
Q psy13615 185 KGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFV-GEKKRGFTEGTVTAKVFSSRNRREKEDNPEEG 261 (263)
Q Consensus 185 ~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~-G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~g 261 (263)
.|..+|+....+|...++++..++++ ++..++++. +.+. |.+-+.++.+..+++ +.|+|+|+|++
T Consensus 240 ~gih~g~~~~~~Pa~~l~~~~~~~l~-~~a~ki~~a-----Lg~~~G~~~vef~~~~~~g~------~~viEiNPR~~ 305 (1066)
T PRK05294 240 MGVHTGDSITVAPAQTLTDKEYQMLR-DASIAIIRE-----IGVETGGCNVQFALNPKDGR------YIVIEMNPRVS 305 (1066)
T ss_pred cceecCCeEEEeCCCCCCHHHHHHHH-HHHHHHHHH-----cCCccCceEEEEEEECCCCc------EEEEEeecCCC
Confidence 46788888777777556777766664 444444444 4588 999999995543332 46999999986
No 74
>cd02203 PurL_repeat1 PurL subunit of the formylglycinamide ribonucleotide amidotransferase (FGAR-AT), first repeat. FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, phosphate, and glutamate in the fourth step of the purine biosynthetic pathway. In eukaryotes and Gram-negative bacteria, FGAR-AT is encoded by the purL gene as a multidomain protein with a molecular mass of about 140 kDa. In Gram-positive bacteria and archaea FGAR-AT is a complex of three proteins: PurS, PurL, and PurQ. PurL itself contains two tandem N- and C-terminal domains (four domains altogether). The N-terminal domains bind ATP and are related to the ATP-binding domains of HypE, ThiL, SelD and PurM.
Probab=85.45 E-value=1.2 Score=41.03 Aligned_cols=115 Identities=20% Similarity=0.057 Sum_probs=70.3
Q ss_pred EEEEcCcchhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCC--------------HHHH
Q psy13615 14 AVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLI--------------LSNS 79 (263)
Q Consensus 14 avl~SG~Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~--------------~~~~ 79 (263)
++.++..++++-.-++ .-...+..++...++..|.|.+ |..++....+++ .+..
T Consensus 27 ~~~~~~e~~~~~~~~~-----p~~~g~~~v~~~vsDiaamGa~-------P~~~~~~l~~p~~~~~~~~~~~~~~~~~~l 94 (313)
T cd02203 27 AVVFKVETHNHPSAIE-----PFGGAATGVGGIIRDILSMGAR-------PIALLDGLRFGDLDIPGYEPKGKLSPRRIL 94 (313)
T ss_pred EEEEEeccCCCCCCcC-----CcccHhhhhhhhhhcccccCCE-------EEEEeeEEeecCCcccccccccccCHHHHH
Confidence 4555555555432221 1112345566667777777766 877776554422 2557
Q ss_pred HHHHHHh--ccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEEeecCCcCCccccccCCcEEEEe
Q psy13615 80 LQVMQKV--GAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKDVAAGDVVIAL 146 (263)
Q Consensus 80 ~~i~~~l--~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~~~~~~~in~hpsl~~g~~ii~L 146 (263)
+++++++ .|+. +++.++||.|...++.+..-.+ .+.+.|.+++++++.. ...++||.|+.+
T Consensus 95 ~~~~~Gi~~~~~~---~gv~lvGGdt~~~~~~~~~p~~--~~~~~G~~~~~~~~~~-~~a~~GD~I~l~ 157 (313)
T cd02203 95 DGVVAGISDYGNC---IGIPTVGGEVRFDPSYYGNPLV--NVGCVGIVPKDHIVKS-KAPGPGDLVVLV 157 (313)
T ss_pred HHHHHHHHHHHHH---hCCceeeeEEEEECCcCCCceE--EEEEEEEEehhhcccC-CCCCCCCEEEEe
Confidence 7788887 6666 9999999999987665322222 3346676664445443 445799999876
No 75
>PLN02735 carbamoyl-phosphate synthase
Probab=85.19 E-value=3.7 Score=44.55 Aligned_cols=66 Identities=21% Similarity=0.330 Sum_probs=45.6
Q ss_pred CCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCe-EEEEeeccccccCCceeeecCcceeeeeCCCCC
Q psy13615 184 DKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPF-VGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEG 261 (263)
Q Consensus 184 d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~-~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~g 261 (263)
..|..+|.+...+|...++++..++++ +....+++.| | + .|..-+.++.+..+.+ +.|+|+|+|++
T Consensus 256 p~gvh~G~s~~vaPa~tL~~~~~q~l~-~~A~ki~~aL---g--i~~G~~nVqf~l~~~~g~------~~ViEVNPR~s 322 (1102)
T PLN02735 256 PMGVHTGDSITVAPAQTLTDKEYQRLR-DYSVAIIREI---G--VECGGSNVQFAVNPVDGE------VMIIEMNPRVS 322 (1102)
T ss_pred CCccccCCEEEEEeCCCCCHHHHHHHH-HHHHHHHHHh---C--CCcCceEEEEEEECCCCc------EEEEEecCCCC
Confidence 357789999888888777888777775 4444555544 3 4 4778888885532222 46899999996
No 76
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=84.85 E-value=4.5 Score=43.66 Aligned_cols=66 Identities=18% Similarity=0.226 Sum_probs=44.6
Q ss_pred CCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCC
Q psy13615 184 DKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEG 261 (263)
Q Consensus 184 d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~g 261 (263)
..|..+|+....+|...++++..+++. ++...+++. +.|.|..-+.++.+..+. .+.|+|+|+|++
T Consensus 238 p~gvh~g~~i~v~Pa~tl~~~~~~~l~-~~a~~i~~~-----Lg~~G~~~Vef~l~~~~g------~~~viEiNPR~~ 303 (1050)
T TIGR01369 238 PMGVHTGDSIVVAPSQTLTDKEYQMLR-DASIKIIRE-----LGIEGGCNVQFALNPDSG------RYYVIEVNPRVS 303 (1050)
T ss_pred CcceecCceEEEecCCCCCHHHHHHHH-HHHHHHHHH-----cCCcceeEEEEEEECCCC------cEEEEEeecCcC
Confidence 357788988888887666777666664 333344443 446788888888543322 247999999985
No 77
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=84.65 E-value=1.3 Score=41.46 Aligned_cols=53 Identities=19% Similarity=0.182 Sum_probs=36.2
Q ss_pred ECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCCC
Q psy13615 195 YCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGD 262 (263)
Q Consensus 195 ~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~gd 262 (263)
..|.+ ++++..+++. ++..+++++| + +.|++.+.++.+. .++.|+|+|+|+|.
T Consensus 222 ~~p~~-l~~~~~~~i~-~~a~~~~~~l---~--~~G~~~ie~~~~~--------~~~~viEinpR~~~ 274 (380)
T TIGR01142 222 WQPQE-MSEKALEEAQ-RIAKRITDAL---G--GYGLFGVELFVKG--------DEVIFSEVSPRPHD 274 (380)
T ss_pred ECCCC-CCHHHHHHHH-HHHHHHHHHc---C--CcceEEEEEEEEC--------CcEEEEEeecCCCC
Confidence 44554 4666666663 5555555555 3 6899999999543 35678899999984
No 78
>COG2144 Selenophosphate synthetase-related proteins [General function prediction only]
Probab=84.14 E-value=3.8 Score=37.92 Aligned_cols=92 Identities=18% Similarity=0.173 Sum_probs=62.2
Q ss_pred ceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCHHHHHHHHHHhccccCCCCceeeeccccccCCCC-cCCCcEEEe
Q psy13615 40 AEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLILSNSLQVMQKVGAKYSDIAPFSQDGGETAELPGL-YQPGDYDLA 118 (263)
Q Consensus 40 ~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~gge~~~l~~~-~~~d~i~LA 118 (263)
.--++|.+|+-.|.|-+ |.+.++-..-.+.+..+++++++. +.+...|.-++||-| .|+. |.+=.++
T Consensus 77 ~csvLVn~~DV~amGG~-------Pv~~vd~isa~s~d~~~ei~eglr-~~a~kfgvpivGGht--hpd~~y~vl~v~-- 144 (324)
T COG2144 77 YCSVLVNVNDVAAMGGE-------PVGAVDAISAKSEDQAREILEGLR-KGARKFGVPIVGGHT--HPDTPYCVLDVV-- 144 (324)
T ss_pred ceeEEEeehhhhhhCCc-------ceEEEEeeecCCHHHHHHHHHHHH-HHHHhcCCceecCcc--CCCCCCceeeeE--
Confidence 45677778888888877 999999766556688999999993 334458999999933 3333 3321222
Q ss_pred eeeeEEeecCCcCCccccccCCcEEEEe
Q psy13615 119 GFAVGAVEKASLLPKVKDVAAGDVVIAL 146 (263)
Q Consensus 119 G~m~~~~~~~~~in~hpsl~~g~~ii~L 146 (263)
+.++...+.++.- -..++||.||.+
T Consensus 145 --i~gl~~~e~Ii~s-~~Ak~GD~lI~~ 169 (324)
T COG2144 145 --IGGLIAEEPIITS-GTAKPGDLLIFV 169 (324)
T ss_pred --Eeccccccccccc-CCCCcCCEEEEE
Confidence 3345554555543 456899999865
No 79
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=82.83 E-value=5.8 Score=43.46 Aligned_cols=58 Identities=10% Similarity=0.074 Sum_probs=37.6
Q ss_pred eeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCC
Q psy13615 192 MGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEG 261 (263)
Q Consensus 192 mga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~g 261 (263)
....+|.|..+++..+++.+.. .++ .+.+.|.|.+++.++.+..+ .++.++|+|+|++
T Consensus 236 ~vee~Pap~l~~~~~~~l~~~a-----~~l-~~aLgy~G~~~VEfild~~~------g~~y~lEVNpRlq 293 (1201)
T TIGR02712 236 VVEETPAPNLPPETRQALLAAA-----ERL-GEAVNYRSAGTVEFIYDEAR------DEFYFLEVNTRLQ 293 (1201)
T ss_pred EEEEcCCCCCCHHHHHHHHHHH-----HHH-HHhcCccceEEEEEEEECCC------CCEEEEEEECCcC
Confidence 3345677767777766665222 222 34666889999999954321 2357889999985
No 80
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=82.78 E-value=4.7 Score=37.42 Aligned_cols=67 Identities=21% Similarity=0.277 Sum_probs=41.3
Q ss_pred cCCCCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCC
Q psy13615 181 YNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEE 260 (263)
Q Consensus 181 ~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~ 260 (263)
|+.+....+|+.....|.+ ++++..++++ ++..++.++| | +.|..-+.++.+..+ .+.++|+|.++
T Consensus 236 ~d~~~ky~~~~~~~~~Pa~-l~~~~~~~i~-~~a~~~~~aL---g--~~G~~rvDf~~~~~g-------~~~vlEiNt~P 301 (333)
T PRK01966 236 YDYEAKYLDGSAELIIPAD-LSEELTEKIR-ELAIKAFKAL---G--CSGLARVDFFLTEDG-------EIYLNEINTMP 301 (333)
T ss_pred EcHHHccCCCCceEEeCCC-CCHHHHHHHH-HHHHHHHHHh---C--CcceEEEEEEEcCCC-------CEEEEEeeCCC
Confidence 3444444455555556664 4666666664 5555555554 3 468888888854332 24689999999
Q ss_pred C
Q psy13615 261 G 261 (263)
Q Consensus 261 g 261 (263)
|
T Consensus 302 g 302 (333)
T PRK01966 302 G 302 (333)
T ss_pred C
Confidence 8
No 81
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=80.67 E-value=10 Score=36.40 Aligned_cols=57 Identities=19% Similarity=0.131 Sum_probs=34.4
Q ss_pred eeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCC
Q psy13615 192 MGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEG 261 (263)
Q Consensus 192 mga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~g 261 (263)
+...+|.+.++++..+++. + .+.+.+..-| |.|...+.++.+..+ .+.++|+|+|++
T Consensus 238 ~~~~~p~~~l~~~~~~~l~-~---~a~~~~~~lg--~~G~~~vEf~~~~~g-------~~~viEINpR~~ 294 (451)
T PRK08591 238 VLEEAPSPAITEELRRKIG-E---AAVKAAKAIG--YRGAGTIEFLYEKNG-------EFYFIEMNTRIQ 294 (451)
T ss_pred EEEECCCCCCCHHHHHHHH-H---HHHHHHHHcC--CCceEEEEEEEcCCC-------CEEEEEEECCCC
Confidence 3445565556666655554 2 2333333334 679988999855322 256899999995
No 82
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=80.35 E-value=9.9 Score=37.07 Aligned_cols=59 Identities=15% Similarity=0.095 Sum_probs=36.2
Q ss_pred CeeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCC
Q psy13615 191 GMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEG 261 (263)
Q Consensus 191 gmga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~g 261 (263)
.+...+|.+..+++..+++. +....+++ .+.|+|..-+.++.+..+ ..+.++|+|+|++
T Consensus 239 ki~e~~p~~~l~~~~~~~l~-~~a~~~~~-----alg~~G~~~vEf~~~~~~------g~~~~iEvNpR~~ 297 (467)
T PRK12833 239 KILEEAPSPSLTPAQRDALC-ASAVRLAR-----QVGYRGAGTLEYLFDDAR------GEFYFIEMNTRIQ 297 (467)
T ss_pred cEEEECCCCCCCHHHHHHHH-HHHHHHHH-----HcCCcCcceEEEEEecCC------CCEEEEEEECCCC
Confidence 55666777667777766664 33323333 335678877777743211 1257899999996
No 83
>PRK05586 biotin carboxylase; Validated
Probab=79.91 E-value=5.2 Score=38.67 Aligned_cols=58 Identities=17% Similarity=0.123 Sum_probs=37.6
Q ss_pred CeeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCC
Q psy13615 191 GMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEG 261 (263)
Q Consensus 191 gmga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~g 261 (263)
.+...+|.+.++++..+++. ++...++++ +.|.|..-+.++.+..+ ...++|+|+|+|
T Consensus 237 ~~~~~~p~~~l~~~~~~~l~-~~a~~i~~a-----Lg~~g~~~vEf~~~~~g-------~~~~iEvNpR~~ 294 (447)
T PRK05586 237 KVLEEAPSPVMTEELRKKMG-EIAVKAAKA-----VNYKNAGTIEFLLDKDG-------NFYFMEMNTRIQ 294 (447)
T ss_pred ceEEEcCCCCCCHHHHHHHH-HHHHHHHHH-----cCCcceeEEEEEEcCCC-------CEEEEEEECCCC
Confidence 46667787777877766664 444444444 34677777888854322 146899999995
No 84
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=78.84 E-value=6.5 Score=37.34 Aligned_cols=58 Identities=21% Similarity=0.375 Sum_probs=40.0
Q ss_pred CCccEEEEEcCc-chhHHHHHHHhccccCCCCceEEEEEecCCC------C-------hhhHHHHHcCCCEEEeeCCC
Q psy13615 9 QRKRVAVLISGT-GTNLKSLLEATSNRSDIMRAEIVLVVSNKHN------V-------EGLNIARNAGIPTKVSTYKH 72 (263)
Q Consensus 9 ~~~riavl~SG~-Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~------a-------~gl~~A~~~gIP~~~v~~~~ 72 (263)
.++|+++..||. -|.+.+.+ .. ++ +.+|.++.-+.-+ | .+...|.+.|||..+++..+
T Consensus 2 ~~~kV~v~mSGGVDSSVaA~l--Lk-~Q---GyeViGl~m~~~~~~~~~~C~s~~d~~da~~va~~LGIp~~~vdf~~ 73 (356)
T COG0482 2 KKKKVLVGMSGGVDSSVAAYL--LK-EQ---GYEVIGLFMKNWDEDGGGGCCSEEDLRDAERVADQLGIPLYVVDFEK 73 (356)
T ss_pred CCcEEEEEccCCHHHHHHHHH--HH-Hc---CCeEEEEEEEeeccCCCCcCCchhHHHHHHHHHHHhCCceEEEchHH
Confidence 467999999998 45555554 21 22 4688887765322 2 36778999999999998643
No 85
>TIGR01736 FGAM_synth_II phosphoribosylformylglycinamidine synthase II. Phosphoribosylformylglycinamidine synthase is a single, long polypeptide in most Proteobacteria and eukarotes. Three proteins are required in Bacillus subtilis and many other species. This is the longest of the three and is designated PurL, phosphoribosylformylglycinamidine synthase II, or FGAM synthase II.
Probab=77.34 E-value=6.7 Score=40.34 Aligned_cols=94 Identities=14% Similarity=0.024 Sum_probs=61.6
Q ss_pred eEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCC-----H-HHHHHHHHHh--ccccCCCCceeeeccccccCCCCcCC
Q psy13615 41 EIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLI-----L-SNSLQVMQKV--GAKYSDIAPFSQDGGETAELPGLYQP 112 (263)
Q Consensus 41 ~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~-----~-~~~~~i~~~l--~~~~~~~~~~~~~gge~~~l~~~~~~ 112 (263)
.-+..+.++..|.|.+ |...++...+++ . ...+++++++ .|+. .|+.++||+|...+++..
T Consensus 92 ~~v~~~vsDi~amGa~-------P~~~~~~l~~~~~~~~~~~~~l~~~~~Gi~~~~~~---~Gv~ivGG~t~~~~~~~~- 160 (715)
T TIGR01736 92 TGVGGILRDILSMGAR-------PIALLDSLRFGPLDDPKNRYLFEGVVAGISDYGNR---IGVPTVGGEVEFDESYNG- 160 (715)
T ss_pred hcccceecccccCCCe-------EeeEEEEeccCCCCCcchHHHHHHHHHHHHHhccc---cCCCccceEEEEecCcCC-
Confidence 3455566666777766 888887655532 1 3467778877 4455 999999999987666532
Q ss_pred CcEEEeeeeeEEeecCCcCCccccccCCcEEEEec
Q psy13615 113 GDYDLAGFAVGAVEKASLLPKVKDVAAGDVVIALP 147 (263)
Q Consensus 113 d~i~LAG~m~~~~~~~~~in~hpsl~~g~~ii~Lp 147 (263)
..+ +.+++.|++++.+++.. ...++||.|+..=
T Consensus 161 ~~~-v~~t~iG~~~~~~~~~~-~~a~~GD~Iv~~G 193 (715)
T TIGR01736 161 NPL-VNVMCVGLVRKDDIVTG-KAKGPGNKLVLVG 193 (715)
T ss_pred CCe-EEEEEEEEEchHHcccC-CCCCCCCEEEEeC
Confidence 222 34556777765555553 4468999998773
No 86
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.
Probab=76.24 E-value=6 Score=37.58 Aligned_cols=66 Identities=20% Similarity=0.302 Sum_probs=37.9
Q ss_pred ccEEEEEcCc-chhHHHHHHHhccccCCCCceEEEEEecCCCC---------------hhhHHHHHcCCCEEEeeCCCCC
Q psy13615 11 KRVAVLISGT-GTNLKSLLEATSNRSDIMRAEIVLVVSNKHNV---------------EGLNIARNAGIPTKVSTYKHTL 74 (263)
Q Consensus 11 ~riavl~SG~-Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a---------------~gl~~A~~~gIP~~~v~~~~~~ 74 (263)
|||+|-.||. -|.+.+++ .. ++ +.+|+.|....-+. .+-..|+++|||.+++|..+
T Consensus 1 ~kV~vamSGGVDSsvaA~L--Lk-~~---G~~V~Gv~m~~~~~~~~~~~~c~~~~d~~~a~~va~~LgIp~~v~d~~~-- 72 (356)
T PF03054_consen 1 KKVLVAMSGGVDSSVAAAL--LK-EQ---GYDVIGVTMRNWDEEDESGKSCCSEEDIEDARRVAEKLGIPHYVVDLRE-- 72 (356)
T ss_dssp -EEEEE--SSHHHHHHHHH--HH-HC---T-EEEEEEEE-SS-SSSHH-HHHHHHHHHHHHHHHHHHT--EEEEETHH--
T ss_pred CeEEEEccCCHHHHHHHHH--HH-hh---cccceEEEEEEeccccccCCCCCchhhHHHHHHHHHhcCCCEEEEChHH--
Confidence 5899999998 45555555 21 22 46888877663322 25567999999999998754
Q ss_pred CHHHHHHHHHHh
Q psy13615 75 ILSNSLQVMQKV 86 (263)
Q Consensus 75 ~~~~~~~i~~~l 86 (263)
+|-+++++-+
T Consensus 73 --~f~~~Vi~~f 82 (356)
T PF03054_consen 73 --EFWEEVIEPF 82 (356)
T ss_dssp --HHHHHTHHHH
T ss_pred --HHHHHHHHHH
Confidence 4555555443
No 87
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=75.68 E-value=6.9 Score=36.52 Aligned_cols=63 Identities=19% Similarity=0.292 Sum_probs=40.8
Q ss_pred CCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCCC
Q psy13615 185 KGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGD 262 (263)
Q Consensus 185 ~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~gd 262 (263)
.....|+....+|.++ +++..++++ ++...+.+.| | +.|..-+.++.++ ..+.++|+|.++|.
T Consensus 255 ~ky~~~~~~~~~Pa~l-~~~~~~~i~-~~a~~~~~~L---g--~~G~~rvD~~~~~--------~~~~vlEiNt~PG~ 317 (347)
T PRK14572 255 SKYKQGGSEEITPARI-SDQEMKRVQ-ELAIRAHESL---G--CKGYSRTDFIIVD--------GEPHILETNTLPGM 317 (347)
T ss_pred HccCCCCeEEEECCCC-CHHHHHHHH-HHHHHHHHHh---C--CcceeEEEEEEEC--------CcEEEEeeeCCCCC
Confidence 3444566666677654 666666664 4443444443 4 6799999999643 23568999999985
No 88
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=74.22 E-value=21 Score=30.77 Aligned_cols=68 Identities=16% Similarity=0.047 Sum_probs=41.3
Q ss_pred cEEEEEcCc-chhHHHHHHHhccccCCCCceEEEEEecCCCC------------hhhHHHHHcCCCEEEeeCCCCCCHHH
Q psy13615 12 RVAVLISGT-GTNLKSLLEATSNRSDIMRAEIVLVVSNKHNV------------EGLNIARNAGIPTKVSTYKHTLILSN 78 (263)
Q Consensus 12 riavl~SG~-Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a------------~gl~~A~~~gIP~~~v~~~~~~~~~~ 78 (263)
|++++.||. -|.+.+.+. .+. +.+++++.+..+.. ..-..|+..|||...++... .+.++
T Consensus 1 kv~v~~SGGkDS~~al~~a---~~~---G~~v~~l~~~~~~~~~~~~~h~~~~e~~~~~A~~lgipl~~i~~~~-~~e~~ 73 (194)
T cd01994 1 KVVALISGGKDSCYALYRA---LEE---GHEVVALLNLTPEEGSSMMYHTVNHELLELQAEAMGIPLIRIEISG-EEEDE 73 (194)
T ss_pred CEEEEecCCHHHHHHHHHH---HHc---CCEEEEEEEEecCCCCcccccccCHHHHHHHHHHcCCcEEEEeCCC-CchHH
Confidence 578899997 555554431 122 35777777662221 33467899999998887532 33355
Q ss_pred HHHHHHHh
Q psy13615 79 SLQVMQKV 86 (263)
Q Consensus 79 ~~~i~~~l 86 (263)
.+.+.+.+
T Consensus 74 ~~~l~~~l 81 (194)
T cd01994 74 VEDLKELL 81 (194)
T ss_pred HHHHHHHH
Confidence 55555555
No 89
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=73.66 E-value=22 Score=34.18 Aligned_cols=55 Identities=25% Similarity=0.254 Sum_probs=38.0
Q ss_pred CccEEEEEc-Cc-chhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEee
Q psy13615 10 RKRVAVLIS-GT-GTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVST 69 (263)
Q Consensus 10 ~~riavl~S-G~-Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~ 69 (263)
|+||++|.| |+ |++-..++.+ ..+ .++|+++.+++......+.|++++-.+.++.
T Consensus 1 mk~VaILGsTGSIG~~tL~vi~~---~p~--~f~VvaLaa~~n~~~l~~q~~~f~p~~v~i~ 57 (385)
T PRK05447 1 MKRITILGSTGSIGTQTLDVIRR---NPD--RFRVVALSAGKNVELLAEQAREFRPKYVVVA 57 (385)
T ss_pred CceEEEEcCChHHHHHHHHHHHh---Ccc--ccEEEEEEcCCCHHHHHHHHHHhCCCEEEEc
Confidence 478999995 44 6665554522 112 4799999988766677889999996665553
No 90
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=72.27 E-value=11 Score=33.71 Aligned_cols=63 Identities=27% Similarity=0.471 Sum_probs=43.0
Q ss_pred ccCCccEEEEEcCcc-----hhHHHHHHHhccccCCCCceEEEEEec------------CCCC-----------------
Q psy13615 7 MVQRKRVAVLISGTG-----TNLKSLLEATSNRSDIMRAEIVLVVSN------------KHNV----------------- 52 (263)
Q Consensus 7 m~~~~riavl~SG~G-----snl~al~~~~~~~~~~l~~~iv~Visn------------~~~a----------------- 52 (263)
...+.||+||+-|+| |---+.+.+ .++.+|+.+..+| +|+|
T Consensus 121 ~l~~grVvIf~gGtg~P~fTTDt~AALrA-----~ei~ad~ll~atn~VDGVY~~DPkk~pdA~~~~~Lty~e~l~~~l~ 195 (238)
T COG0528 121 HLEKGRVVIFGGGTGNPGFTTDTAAALRA-----EEIEADVLLKATNKVDGVYDADPKKDPDAKKYDTLTYDEVLKIGLK 195 (238)
T ss_pred HHHcCCEEEEeCCCCCCCCchHHHHHHHH-----HHhCCcEEEEeccCCCceeCCCCCCCCCceecccCCHHHHHHhcCe
Confidence 345679999999775 333444422 2356788888887 2333
Q ss_pred ----hhhHHHHHcCCCEEEeeCCCCC
Q psy13615 53 ----EGLNIARNAGIPTKVSTYKHTL 74 (263)
Q Consensus 53 ----~gl~~A~~~gIP~~~v~~~~~~ 74 (263)
-++..|++.+||+.+++....+
T Consensus 196 vmD~tA~~l~~~~~i~i~Vfn~~~~~ 221 (238)
T COG0528 196 VMDPTAFSLARDNGIPIIVFNINKPG 221 (238)
T ss_pred eecHHHHHHHHHcCCcEEEEeCCCCc
Confidence 5678899999999999865533
No 91
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A.
Probab=71.90 E-value=6.7 Score=32.01 Aligned_cols=26 Identities=23% Similarity=0.009 Sum_probs=19.0
Q ss_pred EEEEeeccccccCCceeeecCcceeeeeCCCCC
Q psy13615 229 VGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEG 261 (263)
Q Consensus 229 ~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~g 261 (263)
.|...+.++.+..|. .-++|+|+|+|
T Consensus 155 ~G~~~id~~~~~~g~-------~~~iEiN~R~~ 180 (184)
T PF13535_consen 155 NGFFHIDFIVDPDGE-------LYFIEINPRFG 180 (184)
T ss_dssp SEEEEEEEEEETCCE-------EEEEEEESS--
T ss_pred eEEEEEEEEEeCCCC-------EEEEEECccCC
Confidence 899999999555532 36899999997
No 92
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=70.45 E-value=5.3 Score=33.81 Aligned_cols=46 Identities=13% Similarity=0.148 Sum_probs=34.1
Q ss_pred EEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCHHHHHHHHHHhcccc
Q psy13615 43 VLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLILSNSLQVMQKVGAKY 90 (263)
Q Consensus 43 v~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~~~~~~i~~~l~~~~ 90 (263)
+++||-+..-..-.||+++||+..+-...+ +....+++++.+++..
T Consensus 54 vAIITGr~s~ive~Ra~~LGI~~~~qG~~d--K~~a~~~L~~~~~l~~ 99 (170)
T COG1778 54 VAIITGRDSPIVEKRAKDLGIKHLYQGISD--KLAAFEELLKKLNLDP 99 (170)
T ss_pred EEEEeCCCCHHHHHHHHHcCCceeeechHh--HHHHHHHHHHHhCCCH
Confidence 468898866666889999999988775544 4567777788775554
No 93
>PRK08462 biotin carboxylase; Validated
Probab=69.21 E-value=7.9 Score=37.24 Aligned_cols=54 Identities=20% Similarity=0.186 Sum_probs=31.4
Q ss_pred ECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCC
Q psy13615 195 YCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEG 261 (263)
Q Consensus 195 ~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~g 261 (263)
.+|.+.++++..+++. .....+++ .-|+ .|..-+.++.+..+ .+.++|+|+|++
T Consensus 243 ~~p~~~l~~~~~~~i~-~~a~~~~~---alg~--~G~~~ve~~~~~~g-------~~~viEiNpR~~ 296 (445)
T PRK08462 243 ESPAVVLDEKTRERLH-ETAIKAAK---AIGY--EGAGTFEFLLDSNL-------DFYFMEMNTRLQ 296 (445)
T ss_pred EcCCCCCCHHHHHHHH-HHHHHHHH---HcCC--CCcceEEEEEeCCC-------CEEEEEEECCcC
Confidence 3566566777666664 33333333 3354 46555677743221 357899999996
No 94
>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=68.41 E-value=11 Score=32.20 Aligned_cols=53 Identities=30% Similarity=0.335 Sum_probs=40.5
Q ss_pred cEEEEEcCc-chhHHHHHHHhccccCCCCceEEEEEec----CCCChhhHHHHHcCCCEEEeeC
Q psy13615 12 RVAVLISGT-GTNLKSLLEATSNRSDIMRAEIVLVVSN----KHNVEGLNIARNAGIPTKVSTY 70 (263)
Q Consensus 12 riavl~SG~-Gsnl~al~~~~~~~~~~l~~~iv~Visn----~~~a~gl~~A~~~gIP~~~v~~ 70 (263)
++.+|.||. -|.|.+++ . .+++.++-+|-+| +...++-+-|+..|.|..++..
T Consensus 2 ~v~vLfSGGKDSSLaA~i--L----~klgyev~LVTvnFGv~d~~k~A~~tA~~lgF~h~vl~L 59 (198)
T COG2117 2 DVYVLFSGGKDSSLAALI--L----DKLGYEVELVTVNFGVLDSWKYARETAAILGFPHEVLQL 59 (198)
T ss_pred ceEEEecCCCchhHHHHH--H----HHhCCCcEEEEEEeccccchhhHHHHHHHhCCCcceecc
Confidence 578899987 78888876 2 1345777778777 4456888899999999988864
No 95
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=68.07 E-value=18 Score=32.30 Aligned_cols=65 Identities=20% Similarity=0.247 Sum_probs=41.2
Q ss_pred eeccC-CccEEEEEcCc--chhHHHHHHHhccccCCCCceEEEEEecCC----CC-hhhHHHHHcCCCEEEeeC
Q psy13615 5 TRMVQ-RKRVAVLISGT--GTNLKSLLEATSNRSDIMRAEIVLVVSNKH----NV-EGLNIARNAGIPTKVSTY 70 (263)
Q Consensus 5 ~~m~~-~~riavl~SG~--Gsnl~al~~~~~~~~~~l~~~iv~Visn~~----~a-~gl~~A~~~gIP~~~v~~ 70 (263)
.+|.. ..||+|.+||. .+.|..++.... +....+.++.++-.|.- +. ...+.|+++|||..+++.
T Consensus 23 ~~li~~~~kilVa~SGG~DS~~LL~ll~~l~-~~~~~~~~l~av~vd~g~~~~~~~~~~~~~~~lgI~~~v~~~ 95 (258)
T PRK10696 23 FNMIEEGDRVMVCLSGGKDSYTLLDILLNLQ-KRAPINFELVAVNLDQKQPGFPEHVLPEYLESLGVPYHIEEQ 95 (258)
T ss_pred cCCCCCCCEEEEEecCCHHHHHHHHHHHHHH-HhCCCCeEEEEEEecCCCCCCCHHHHHHHHHHhCCCEEEEEe
Confidence 35665 35899999998 444554542211 11223468888887752 11 236789999999988753
No 96
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=68.05 E-value=27 Score=31.46 Aligned_cols=85 Identities=11% Similarity=0.137 Sum_probs=52.0
Q ss_pred cEEEEEcCc-----chhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCHHHHHHHHHHh
Q psy13615 12 RVAVLISGT-----GTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLILSNSLQVMQKV 86 (263)
Q Consensus 12 riavl~SG~-----Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~~~~~~i~~~l 86 (263)
||+|.+-|+ |+-++.+.=+...+ ..+.++..++.+.+ ....++-++.|.|+..++.... ..+...++.+.+
T Consensus 1 ~i~ir~Da~~~iG~GHv~Rcl~LA~~l~--~~g~~v~f~~~~~~-~~~~~~i~~~g~~v~~~~~~~~-~~~d~~~~~~~l 76 (279)
T TIGR03590 1 KILFRADASSEIGLGHVMRCLTLARALH--AQGAEVAFACKPLP-GDLIDLLLSAGFPVYELPDESS-RYDDALELINLL 76 (279)
T ss_pred CEEEEecCCccccccHHHHHHHHHHHHH--HCCCEEEEEeCCCC-HHHHHHHHHcCCeEEEecCCCc-hhhhHHHHHHHH
Confidence 466666555 88888775221111 12467776666543 3446788999999888864321 113344455655
Q ss_pred ccccCCCCceeeeccccccCCCCcCCCcEEEeeee
Q psy13615 87 GAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFA 121 (263)
Q Consensus 87 ~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m 121 (263)
++ .++|++++-.|-
T Consensus 77 --~~-------------------~~~d~vV~D~y~ 90 (279)
T TIGR03590 77 --EE-------------------EKFDILIVDHYG 90 (279)
T ss_pred --Hh-------------------cCCCEEEEcCCC
Confidence 55 678999988874
No 97
>PRK06524 biotin carboxylase-like protein; Validated
Probab=68.02 E-value=17 Score=36.06 Aligned_cols=58 Identities=14% Similarity=0.113 Sum_probs=37.6
Q ss_pred ECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCCC
Q psy13615 195 YCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGD 262 (263)
Q Consensus 195 ~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~gd 262 (263)
.+|.+ .+++..++++ ++...+.+.|. ++.|.|+.-+.++.+..+. .+-++|+|+||++
T Consensus 268 i~PA~-L~~ei~eeIq-eiA~ka~~aL~--~lG~~Gv~rVDFfvd~ddg------evYfnEINPR~~G 325 (493)
T PRK06524 268 IWPGA-LPPAQTRKAR-EMVRKLGDVLS--REGYRGYFEVDLLHDLDAD------ELYLGEVNPRLSG 325 (493)
T ss_pred EccCC-CCHHHHHHHH-HHHHHHHHHhh--cCCCEEEEEEEEEEECCCC------eEEEEEEeCCccc
Confidence 45553 4666666664 55555555553 3348899999999653211 2458999999986
No 98
>COG0611 ThiL Thiamine monophosphate kinase [Coenzyme metabolism]
Probab=67.91 E-value=16 Score=34.16 Aligned_cols=79 Identities=18% Similarity=0.118 Sum_probs=54.4
Q ss_pred HHHHcCCCEEEeeCCCCC---CHHHHHHHHHHh--ccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEEeecCCcC
Q psy13615 57 IARNAGIPTKVSTYKHTL---ILSNSLQVMQKV--GAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAVEKASLL 131 (263)
Q Consensus 57 ~A~~~gIP~~~v~~~~~~---~~~~~~~i~~~l--~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~~~~~~~i 131 (263)
.|..-+.|.+++-..... +.++.+++.+++ .++. +++.++||.|.. - -..++++..+.+++.+.+
T Consensus 74 lAAMGa~P~~~~lsl~lP~~~d~~~~~~~~~Gi~e~~~~---y~~~lIGGDt~~----~---~l~is~t~iG~~~~~~~l 143 (317)
T COG0611 74 LAAMGARPKAFLLSLGLPPDLDEEWLEALADGIFEAAKK---YGVKLIGGDTNR----G---PLSISVTAIGVLPKGRAL 143 (317)
T ss_pred HHHcCCCchhheeeeeCCCCCCHHHHHHHHHHHHHHHHH---cCCeEeccccCC----C---ceEEEEEEEEecCCCchh
Confidence 344445587776555444 447888888888 4455 999999999987 2 345677778877766655
Q ss_pred CccccccCCcEEEEe
Q psy13615 132 PKVKDVAAGDVVIAL 146 (263)
Q Consensus 132 n~hpsl~~g~~ii~L 146 (263)
-. ...++||.|..-
T Consensus 144 ~R-~gAkpGD~v~vt 157 (317)
T COG0611 144 LR-SGAKPGDLVAVT 157 (317)
T ss_pred hc-cCCCCCCEEEEc
Confidence 54 456899999643
No 99
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=67.88 E-value=10 Score=34.43 Aligned_cols=28 Identities=18% Similarity=-0.057 Sum_probs=21.9
Q ss_pred CeEEEEeeccccccCCceeeecCcceeeeeCCCCCC
Q psy13615 227 PFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGD 262 (263)
Q Consensus 227 ~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~gd 262 (263)
.|.|...+.++.+. .++.++|+|+|++-
T Consensus 245 g~~G~~~vd~~~~~--------g~~~viEiNpR~~g 272 (326)
T PRK12767 245 GARGPLNIQCFVTD--------GEPYLFEINPRFGG 272 (326)
T ss_pred CCeeeEEEEEEEEC--------CeEEEEEEeCCCCC
Confidence 35999999999554 44578899999973
No 100
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=67.66 E-value=9.9 Score=37.23 Aligned_cols=57 Identities=14% Similarity=0.176 Sum_probs=35.2
Q ss_pred eeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCC
Q psy13615 192 MGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEG 261 (263)
Q Consensus 192 mga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~g 261 (263)
++..+|.|.++++..+++. +...++++++ + |.|..-+.|+.+.. ..+.++|+|+|++
T Consensus 238 ~ie~~P~~~l~~~~~~~i~-~~a~~~~~al---g--~~g~~~vEf~~~~~-------~~~y~iEiN~R~~ 294 (478)
T PRK08463 238 VIEIAPCPSISDNLRKTMG-VTAVAAAKAV---G--YTNAGTIEFLLDDY-------NRFYFMEMNTRIQ 294 (478)
T ss_pred eEEECCCCCCCHHHHHHHH-HHHHHHHHHc---C--CCCceeEEEEEcCC-------CCEEEEEEECCcC
Confidence 5567787777877766664 3333333333 3 56655667775432 2357899999986
No 101
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=67.11 E-value=12 Score=37.69 Aligned_cols=53 Identities=9% Similarity=-0.026 Sum_probs=36.9
Q ss_pred CcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCCC
Q psy13615 196 CPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGD 262 (263)
Q Consensus 196 ~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~gd 262 (263)
.|.+ ++++..++++ ++...+++.| .+.|++-+.++.+..+. +.++|+|+|+|.
T Consensus 240 ~Pa~-l~~~~~~~~~-~~A~~~~~aL-----g~~Gv~~vEffv~~dG~-------v~v~EInpRpg~ 292 (577)
T PLN02948 240 APAN-VPWKVAKLAT-DVAEKAVGSL-----EGAGVFGVELFLLKDGQ-------ILLNEVAPRPHN 292 (577)
T ss_pred ECCC-CCHHHHHHHH-HHHHHHHHHh-----CCCeEEEEEEEEcCCCc-------EEEEEEeCCCCC
Confidence 4553 4667766664 5666666665 38999999999654442 468999999984
No 102
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=61.31 E-value=16 Score=36.05 Aligned_cols=56 Identities=14% Similarity=0.086 Sum_probs=33.9
Q ss_pred eeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCC
Q psy13615 192 MGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEG 261 (263)
Q Consensus 192 mga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~g 261 (263)
....+|.|.+++++.+++. +. +.+.++ .+.|.|..-+.|..+ .....++|+|+|++
T Consensus 238 ~ie~~Pa~~l~~~~~~~l~-~~---A~~l~~--algy~g~gtVEfl~~--------~g~~yflEiNpRlq 293 (499)
T PRK08654 238 LIEEAPSPIMTPELRERMG-EA---AVKAAK--AINYENAGTVEFLYS--------NGNFYFLEMNTRLQ 293 (499)
T ss_pred eEEECCCCCCCHHHHHHHH-HH---HHHHHH--HcCCCCceEEEEEEE--------CCcEEEEEEECCCC
Confidence 4455787777877766664 22 223332 334666555666643 23457899999995
No 103
>PRK01213 phosphoribosylformylglycinamidine synthase II; Provisional
Probab=59.40 E-value=24 Score=36.52 Aligned_cols=93 Identities=14% Similarity=0.028 Sum_probs=56.7
Q ss_pred EEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCC------HHHHHHHHHHh--ccccCCCCceeeeccccccCCCCcCCC
Q psy13615 42 IVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLI------LSNSLQVMQKV--GAKYSDIAPFSQDGGETAELPGLYQPG 113 (263)
Q Consensus 42 iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~------~~~~~~i~~~l--~~~~~~~~~~~~~gge~~~l~~~~~~d 113 (263)
-+..+.++..|.|.+ |...++...+++ ....+.+++++ .|+. .|+.++||+|...+++.. .
T Consensus 105 ~v~~~i~Di~amGa~-------P~a~~~~l~~~~~~~~~~~~~l~~~~~Gi~~~~n~---~Gvp~vgG~t~~~~~~~~-~ 173 (724)
T PRK01213 105 GVGGILRDIFSMGAR-------PIALLDSLRFGELDHPKTRYLLEGVVAGIGGYGNC---IGVPTVGGEVYFDESYNG-N 173 (724)
T ss_pred cccceeccccccCce-------eeeeeeEEEccCCCCCcHHHHHHHHHHHHHHHHHh---cCCCEeeEEEEEeCCcCC-C
Confidence 344455566666665 877776654432 24566677777 3444 899999999987666532 2
Q ss_pred cEEEeeeeeEEeecCCcCCccccccCCcEEEEec
Q psy13615 114 DYDLAGFAVGAVEKASLLPKVKDVAAGDVVIALP 147 (263)
Q Consensus 114 ~i~LAG~m~~~~~~~~~in~hpsl~~g~~ii~Lp 147 (263)
-+ +.+++.|++++.+++.. ....+||.||.+=
T Consensus 174 p~-v~~~~iG~~~~~~~~r~-~~~~~Gd~Ii~~G 205 (724)
T PRK01213 174 PL-VNAMCVGLVRHDDIVLA-KASGVGNPVVYVG 205 (724)
T ss_pred ce-EEEEEEEEEcHHHcccC-CCCCCCCEEEEeC
Confidence 22 24456677665454332 2334999999763
No 104
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=58.10 E-value=41 Score=26.06 Aligned_cols=61 Identities=23% Similarity=0.310 Sum_probs=37.1
Q ss_pred CccEEEEEcCcchhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCC
Q psy13615 10 RKRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLI 75 (263)
Q Consensus 10 ~~riavl~SG~Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~ 75 (263)
+..+++++|.+|.+-+.+-.....+. .++.++++-+|. .-.+.|.++|++.+.++....++
T Consensus 43 ~~dl~I~iS~SG~t~e~i~~~~~a~~--~g~~iI~IT~~~---~l~~~~~~~~~~~~~~p~~~~~r 103 (119)
T cd05017 43 RKTLVIAVSYSGNTEETLSAVEQAKE--RGAKIVAITSGG---KLLEMAREHGVPVIIIPKGLQPR 103 (119)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHH--CCCEEEEEeCCc---hHHHHHHHcCCcEEECCCCCCCc
Confidence 44689999999876665431111121 245666555444 34457888899999886554333
No 105
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=57.63 E-value=25 Score=34.26 Aligned_cols=57 Identities=18% Similarity=0.104 Sum_probs=34.6
Q ss_pred eeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCC
Q psy13615 192 MGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEG 261 (263)
Q Consensus 192 mga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~g 261 (263)
+...+|.+.++++..+++. +....+++++ .|.|..-+.|+.+.. .+..++|+|+|++
T Consensus 237 ~~e~~P~~~l~~~~~~~i~-~~a~~~~~aL-----g~~g~~~vEf~~d~~-------g~~y~iEiNpRl~ 293 (472)
T PRK07178 237 LIEIAPSPQLTPEQRAYIG-DLAVRAAKAV-----GYENAGTVEFLLDAD-------GEVYFMEMNTRVQ 293 (472)
T ss_pred eEEECCCCCCCHHHHHHHH-HHHHHHHHHc-----CCCceeEEEEEEeCC-------CCEEEEEEeCCcC
Confidence 4456677677777666664 3333333332 366655577774322 3457899999985
No 106
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed
Probab=57.22 E-value=42 Score=31.49 Aligned_cols=54 Identities=28% Similarity=0.401 Sum_probs=35.1
Q ss_pred ccEEEEEcCc--chhHHHHHHHhccccCCCCceEEEEEecCCC----------------ChhhHHHHHcCCCEEEeeCC
Q psy13615 11 KRVAVLISGT--GTNLKSLLEATSNRSDIMRAEIVLVVSNKHN----------------VEGLNIARNAGIPTKVSTYK 71 (263)
Q Consensus 11 ~riavl~SG~--Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~----------------a~gl~~A~~~gIP~~~v~~~ 71 (263)
+||++..||. .|-+..++. +. +.++.++-.|... ..+.+.|+++|||.++++..
T Consensus 1 ~kVlValSGGvDSsvla~lL~----~~---G~~V~~v~~~~~~~~~~~~~~~~~s~~d~~~a~~~a~~LgIp~~vvd~~ 72 (346)
T PRK00143 1 KRVVVGMSGGVDSSVAAALLK----EQ---GYEVIGVFMKLWDDDDETGKGGCCAEEDIADARRVADKLGIPHYVVDFE 72 (346)
T ss_pred CeEEEEecCCHHHHHHHHHHH----Hc---CCcEEEEEEeCCCcccccccCCcCcHHHHHHHHHHHHHcCCcEEEEeCH
Confidence 3899999998 344444441 21 3467676665321 14567899999999999753
No 107
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=56.68 E-value=55 Score=31.13 Aligned_cols=54 Identities=28% Similarity=0.271 Sum_probs=36.6
Q ss_pred ccEEEEEcCc-chhH-HHHHHHhccccCCCCceEEEEEecCCC---ChhhHHHHHcCCCEEEeeCC
Q psy13615 11 KRVAVLISGT-GTNL-KSLLEATSNRSDIMRAEIVLVVSNKHN---VEGLNIARNAGIPTKVSTYK 71 (263)
Q Consensus 11 ~riavl~SG~-Gsnl-~al~~~~~~~~~~l~~~iv~Visn~~~---a~gl~~A~~~gIP~~~v~~~ 71 (263)
.||++..||. -|.+ ..++. + .+.++.++..+... ..+.+.|+++|||..+++..
T Consensus 6 ~kVlVa~SGGvDSsv~a~lL~----~---~G~eV~av~~~~~~~e~~~a~~va~~LGI~~~vvd~~ 64 (362)
T PRK14664 6 KRVLVGMSGGIDSTATCLMLQ----E---QGYEIVGVTMRVWGDEPQDARELAARMGIEHYVADER 64 (362)
T ss_pred CEEEEEEeCCHHHHHHHHHHH----H---cCCcEEEEEecCcchhHHHHHHHHHHhCCCEEEEeCh
Confidence 5899999998 3434 33331 2 14577777776421 24567899999999998754
No 108
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=55.73 E-value=25 Score=34.55 Aligned_cols=54 Identities=19% Similarity=0.204 Sum_probs=39.9
Q ss_pred CccEEEEEc-Cc-chhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEe
Q psy13615 10 RKRVAVLIS-GT-GTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVS 68 (263)
Q Consensus 10 ~~riavl~S-G~-Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v 68 (263)
++||++|+| |+ |++...++++ .. + .++++++-+++.-..-.+.++++.-.+..+
T Consensus 57 ~KkI~ILGSTGSIGtqtLdVI~~--~p-d--~f~vvaLaag~Ni~lL~~q~~~f~p~~v~v 112 (454)
T PLN02696 57 PKPISLLGSTGSIGTQTLDIVAE--NP-D--KFKVVALAAGSNVTLLADQVRKFKPKLVAV 112 (454)
T ss_pred ccEEEEecCCcHhhHHHHHHHHh--Cc-c--ccEEEEEECCCCHHHHHHHHHHhCCCEEEE
Confidence 579999999 77 9988888844 12 2 368998888775445567799999665555
No 109
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=54.86 E-value=21 Score=31.00 Aligned_cols=20 Identities=20% Similarity=0.421 Sum_probs=15.9
Q ss_pred ccCCccEEEEEcCc-chhHHH
Q psy13615 7 MVQRKRVAVLISGT-GTNLKS 26 (263)
Q Consensus 7 m~~~~riavl~SG~-Gsnl~a 26 (263)
||.++||+|+.+|+ |+.+-.
T Consensus 1 ~m~~~kI~iIG~G~mg~ala~ 21 (245)
T PRK07634 1 MLKKHRILFIGAGRMAEAIFS 21 (245)
T ss_pred CCCCCeEEEECcCHHHHHHHH
Confidence 78788999999998 765543
No 110
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=54.16 E-value=61 Score=26.24 Aligned_cols=52 Identities=21% Similarity=0.182 Sum_probs=37.9
Q ss_pred EEEEEcCc--chhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEee
Q psy13615 13 VAVLISGT--GTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVST 69 (263)
Q Consensus 13 iavl~SG~--Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~ 69 (263)
|++|.|.. |++...++++ ..+ .++|+++.+++.--.-.+.|++++-++.++.
T Consensus 1 i~ILGsTGSIG~qtLdVi~~---~~d--~f~v~~Lsa~~n~~~L~~q~~~f~p~~v~i~ 54 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRK---HPD--KFEVVALSAGSNIEKLAEQAREFKPKYVVIA 54 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHH---CTT--TEEEEEEEESSTHHHHHHHHHHHT-SEEEES
T ss_pred CEEEcCCcHHHHHHHHHHHh---CCC--ceEEEEEEcCCCHHHHHHHHHHhCCCEEEEc
Confidence 56777765 8888888854 212 4799999998755566889999998887774
No 111
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=54.10 E-value=41 Score=28.01 Aligned_cols=56 Identities=16% Similarity=0.207 Sum_probs=35.2
Q ss_pred cEEEEEcCc--chhHHHHHHHhccccCCCCceEEEEEecCCC--------ChhhHHHHHcCCCEEEeeC
Q psy13615 12 RVAVLISGT--GTNLKSLLEATSNRSDIMRAEIVLVVSNKHN--------VEGLNIARNAGIPTKVSTY 70 (263)
Q Consensus 12 riavl~SG~--Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~--------a~gl~~A~~~gIP~~~v~~ 70 (263)
||++..||. .+-+..++.. .. ...+.++.+|..|... -.+.+.|+++|||..+++.
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~--~~-~~~~~~v~~v~vd~g~~~~~~~~~~~~~~~~~~~gi~~~~~~~ 66 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLK--LQ-PKLKIRLIAAHVDHGLRPESDEEAEFVQQFCKKLNIPLEIKKV 66 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHH--HH-HHcCCCEEEEEeCCCCChhHHHHHHHHHHHHHHcCCCEEEEEe
Confidence 588999998 4444444422 11 1223467777777432 2446789999999988864
No 112
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=53.73 E-value=20 Score=32.64 Aligned_cols=58 Identities=19% Similarity=0.221 Sum_probs=32.7
Q ss_pred CCeeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCC
Q psy13615 190 GGMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEG 261 (263)
Q Consensus 190 Ggmga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~g 261 (263)
|...-.+|..+ +++..++++ ++..++.+.| | ++|..-+.+..+..+ .+.++|+|.|+|
T Consensus 209 ~~~~~~~P~~l-~~~~~~~i~-~~a~~~~~~L---g--~~G~~rvD~~~~~~g-------~~~vlEIN~~Pg 266 (296)
T PRK14569 209 GKSIYHSPSGL-CEQKELEVR-QLAKKAYDLL---G--CSGHARVDFIYDDRG-------NFYIMEINSSPG 266 (296)
T ss_pred CCcEEEeCCCC-CHHHHHHHH-HHHHHHHHHh---C--CceEEEEEEEEcCCC-------CEEEEEeeCCCC
Confidence 43333455543 444444443 3333333433 4 568888888854332 246899999998
No 113
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=53.04 E-value=1.1e+02 Score=27.12 Aligned_cols=67 Identities=21% Similarity=0.090 Sum_probs=39.4
Q ss_pred cEEEEEcCc-chhHHHHHHHhccccCCCCceEEEEEecCCCC------------hhhHHHHHcCCCEEEeeCCCCCCHHH
Q psy13615 12 RVAVLISGT-GTNLKSLLEATSNRSDIMRAEIVLVVSNKHNV------------EGLNIARNAGIPTKVSTYKHTLILSN 78 (263)
Q Consensus 12 riavl~SG~-Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a------------~gl~~A~~~gIP~~~v~~~~~~~~~~ 78 (263)
|++++.||. -|++.... + .+ + .+|+++++-.+.- -.-..|+..|||...+.... ...+.
T Consensus 2 kv~vl~SGGKDS~lAl~~-~--~~--~--~~V~~L~~~~~~~~~s~~~h~~~~~~~~~qA~algiPl~~~~~~~-~~e~~ 73 (222)
T TIGR00289 2 KVAVLYSGGKDSILALYK-A--LE--E--HEVISLVGVFSENEESYMFHSPNLHLTDLVAEAVGIPLIKLYTSG-EEEKE 73 (222)
T ss_pred eEEEEecCcHHHHHHHHH-H--HH--c--CeeEEEEEEcCCCCCccccccCCHHHHHHHHHHcCCCeEEEEcCC-chhHH
Confidence 688899987 56665443 1 12 1 3666666654431 33467899999987664322 12345
Q ss_pred HHHHHHHh
Q psy13615 79 SLQVMQKV 86 (263)
Q Consensus 79 ~~~i~~~l 86 (263)
.+++.+.+
T Consensus 74 ~~~l~~~l 81 (222)
T TIGR00289 74 VEDLAGQL 81 (222)
T ss_pred HHHHHHHH
Confidence 55555655
No 114
>KOG2862|consensus
Probab=52.51 E-value=59 Score=30.72 Aligned_cols=68 Identities=24% Similarity=0.239 Sum_probs=43.2
Q ss_pred EEEEEcCcchh-HHHHHHHhccccCCCCceEEEEEecCCC-ChhhHHHHHcCCCEEEeeCCCCCCHHHHHHHHHHh
Q psy13615 13 VAVLISGTGTN-LKSLLEATSNRSDIMRAEIVLVVSNKHN-VEGLNIARNAGIPTKVSTYKHTLILSNSLQVMQKV 86 (263)
Q Consensus 13 iavl~SG~Gsn-l~al~~~~~~~~~~l~~~iv~Visn~~~-a~gl~~A~~~gIP~~~v~~~~~~~~~~~~~i~~~l 86 (263)
-.+++||+||. +++.+ .+- -.+.|.++|+++-.- -...+.|+++|..+.+++ .+.+...-.+++.+.+
T Consensus 69 ~tf~isgsGh~g~E~al---~N~--lePgd~vLv~~~G~wg~ra~D~~~r~ga~V~~v~-~~~G~~~~le~i~~~l 138 (385)
T KOG2862|consen 69 QTFVISGSGHSGWEAAL---VNL--LEPGDNVLVVSTGTWGQRAADCARRYGAEVDVVE-ADIGQAVPLEEITEKL 138 (385)
T ss_pred ceEEEecCCcchHHHHH---Hhh--cCCCCeEEEEEechHHHHHHHHHHhhCceeeEEe-cCcccCccHHHHHHHH
Confidence 56888999875 34433 111 126788888887432 255788999999999994 4444433344555655
No 115
>PRK06849 hypothetical protein; Provisional
Probab=51.52 E-value=21 Score=33.63 Aligned_cols=29 Identities=21% Similarity=0.210 Sum_probs=21.9
Q ss_pred CCeEEEEeeccccccCCceeeecCcceeeeeCCCCC
Q psy13615 226 TPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEG 261 (263)
Q Consensus 226 ~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~g 261 (263)
+.|.|..-+.++.+..| + ..++|+|+|++
T Consensus 249 l~~~G~~~~df~~~~~g-~------~~~iEiNpR~~ 277 (389)
T PRK06849 249 LNYTGQISFDFIETENG-D------AYPIECNPRTT 277 (389)
T ss_pred cCceeEEEEEEEECCCC-C------EEEEEecCCCC
Confidence 45899999999976322 2 35889999997
No 116
>PLN00200 argininosuccinate synthase; Provisional
Probab=51.38 E-value=60 Score=31.43 Aligned_cols=58 Identities=17% Similarity=0.154 Sum_probs=37.4
Q ss_pred eeccCCccEEEEEcCc-chhHH-HHHHHhccccCCCCceEEEEEecCCCC-----hhhHHHHHcCCCE-EEeeC
Q psy13615 5 TRMVQRKRVAVLISGT-GTNLK-SLLEATSNRSDIMRAEIVLVVSNKHNV-----EGLNIARNAGIPT-KVSTY 70 (263)
Q Consensus 5 ~~m~~~~riavl~SG~-Gsnl~-al~~~~~~~~~~l~~~iv~Visn~~~a-----~gl~~A~~~gIP~-~~v~~ 70 (263)
|.|. .|+++..||. -|.+- .++. + +++.+|+++..|-... .+.+.|+++|+|. .+++.
T Consensus 2 ~~~~--~kVvva~SGGlDSsvla~~L~----e--~~G~eViav~id~Gq~~~el~~a~~~A~~lGi~~~~v~dl 67 (404)
T PLN00200 2 RGKL--NKVVLAYSGGLDTSVILKWLR----E--NYGCEVVCFTADVGQGIEELEGLEAKAKASGAKQLVVKDL 67 (404)
T ss_pred CCCC--CeEEEEEeCCHHHHHHHHHHH----H--hhCCeEEEEEEECCCChHHHHHHHHHHHHcCCCEEEEEeC
Confidence 5674 4899999998 34333 3331 1 2246888888885432 3567889999985 55553
No 117
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=50.03 E-value=50 Score=31.33 Aligned_cols=55 Identities=22% Similarity=0.162 Sum_probs=36.4
Q ss_pred CccEEEEEcCc--chhHHHHHHHhccccCCCCceEEEEEecCCC---C-----hhhHHHHHcCCCEEEeeCC
Q psy13615 10 RKRVAVLISGT--GTNLKSLLEATSNRSDIMRAEIVLVVSNKHN---V-----EGLNIARNAGIPTKVSTYK 71 (263)
Q Consensus 10 ~~riavl~SG~--Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~---a-----~gl~~A~~~gIP~~~v~~~ 71 (263)
..|+++..||. .|-+..++. +. +.++.++..|..+ . .+.+.|+++|||.++++..
T Consensus 5 ~~kVlValSGGVDSsvaa~LL~----~~---G~~V~~v~~~~~~~~~~~~d~~~a~~va~~LgIp~~vvd~~ 69 (360)
T PRK14665 5 NKRVLLGMSGGTDSSVAAMLLL----EA---GYEVTGVTFRFYEFNGSTEYLEDARALAERLGIGHITYDAR 69 (360)
T ss_pred CCEEEEEEcCCHHHHHHHHHHH----Hc---CCeEEEEEEecCCCCCChHHHHHHHHHHHHhCCCEEEEecH
Confidence 45899999998 444444441 21 3578777765321 1 2467899999999998763
No 118
>PRK13820 argininosuccinate synthase; Provisional
Probab=48.67 E-value=70 Score=30.86 Aligned_cols=55 Identities=22% Similarity=0.179 Sum_probs=38.0
Q ss_pred ccEEEEEcCc--chhHHHHHHHhccccCCCCc-eEEEEEecCCCC-----hhhHHHHHcCCCEEEeeCC
Q psy13615 11 KRVAVLISGT--GTNLKSLLEATSNRSDIMRA-EIVLVVSNKHNV-----EGLNIARNAGIPTKVSTYK 71 (263)
Q Consensus 11 ~riavl~SG~--Gsnl~al~~~~~~~~~~l~~-~iv~Visn~~~a-----~gl~~A~~~gIP~~~v~~~ 71 (263)
.||++..||. .|.+..++. + .++. ++.++..|.... .+.+.|+++|+|..+++..
T Consensus 3 ~kVvvA~SGGvDSsvll~lL~----e--~~g~~~Viav~vd~g~~~~e~~~a~~~a~~lGi~~~vvd~~ 65 (394)
T PRK13820 3 KKVVLAYSGGLDTSVCVPLLK----E--KYGYDEVITVTVDVGQPEEEIKEAEEKAKKLGDKHYTIDAK 65 (394)
T ss_pred CeEEEEEeCcHHHHHHHHHHH----H--hcCCCEEEEEEEECCCChHHHHHHHHHHHHcCCCEEEEeCH
Confidence 4899999998 344444431 1 2344 788888875331 4678999999999998875
No 119
>cd01998 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.
Probab=48.52 E-value=78 Score=29.72 Aligned_cols=53 Identities=25% Similarity=0.416 Sum_probs=34.3
Q ss_pred cEEEEEcCc--chhHHHHHHHhccccCCCCceEEEEEecCCC-------C-------hhhHHHHHcCCCEEEeeCC
Q psy13615 12 RVAVLISGT--GTNLKSLLEATSNRSDIMRAEIVLVVSNKHN-------V-------EGLNIARNAGIPTKVSTYK 71 (263)
Q Consensus 12 riavl~SG~--Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~-------a-------~gl~~A~~~gIP~~~v~~~ 71 (263)
||++..||. .|-+..++. +. +.++.++-.|..+ | .+.+.|+++|||..+++..
T Consensus 1 kVlValSGGvDSsvla~lL~----~~---g~~v~~v~i~~~~~~~~~~~~~s~~d~~~a~~va~~lgI~~~vvd~~ 69 (349)
T cd01998 1 KVVVAMSGGVDSSVAAALLK----EQ---GYEVIGVFMKNWDEDDGKGGCCSEEDLKDARRVADQLGIPHYVVNFE 69 (349)
T ss_pred CEEEEecCCHHHHHHHHHHH----Hc---CCcEEEEEEecccccccccCCCCHHHHHHHHHHHHHhCCcEEEEECc
Confidence 588999998 444444442 11 3467776654321 1 3567889999999998754
No 120
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=47.61 E-value=35 Score=30.85 Aligned_cols=63 Identities=25% Similarity=0.366 Sum_probs=40.8
Q ss_pred CccEEEEEcCcchhHHHHH-H-HhccccCCCCceEEEEEecCCCChhhHHHHH----cCCCEEEeeCCC
Q psy13615 10 RKRVAVLISGTGTNLKSLL-E-ATSNRSDIMRAEIVLVVSNKHNVEGLNIARN----AGIPTKVSTYKH 72 (263)
Q Consensus 10 ~~riavl~SG~Gsnl~al~-~-~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~----~gIP~~~v~~~~ 72 (263)
+-.|-+++-|+|++|+--- + .....-..+..|.+.++|=++.++|=..||+ .|||+.+++...
T Consensus 29 RedI~vrv~gsGaKm~pe~~~~~~~~~~~~~~pDf~i~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~p 97 (277)
T PRK00994 29 REDIDVRVVGSGAKMGPEEVEEVVKKMLEEWKPDFVIVISPNPAAPGPKKAREILKAAGIPCIVIGDAP 97 (277)
T ss_pred ccCceEEEeccCCCCCHHHHHHHHHHHHHhhCCCEEEEECCCCCCCCchHHHHHHHhcCCCEEEEcCCC
Confidence 3346667777777765321 1 0000001335689999999999988777765 499999998655
No 121
>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase. 1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.
Probab=46.39 E-value=52 Score=31.67 Aligned_cols=54 Identities=13% Similarity=0.089 Sum_probs=40.4
Q ss_pred ccEEEEEcCc--chhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEee
Q psy13615 11 KRVAVLISGT--GTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVST 69 (263)
Q Consensus 11 ~riavl~SG~--Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~ 69 (263)
+||++|+|.. |++...++.+ ..+ .++|+++.+++.-..-.+.+++++-.+..+.
T Consensus 2 k~i~IlGsTGSIG~qtL~Vi~~---~~~--~f~v~~Laa~~n~~~L~~q~~~f~p~~v~i~ 57 (389)
T TIGR00243 2 KQIVILGSTGSIGKSTLDVVRH---NPD--HFQVVALSAGKNVALMVEQILEFRPKFVAID 57 (389)
T ss_pred ceEEEEecChHHHHHHHHHHHh---Ccc--ccEEEEEEcCCCHHHHHHHHHHcCCCEEEEc
Confidence 6899999877 8888877743 112 4799999998755566788999996666663
No 122
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=45.88 E-value=63 Score=26.76 Aligned_cols=79 Identities=13% Similarity=0.015 Sum_probs=51.8
Q ss_pred cCCccEEEEEcCc-chhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCHHHHHHHHHHh
Q psy13615 8 VQRKRVAVLISGT-GTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLILSNSLQVMQKV 86 (263)
Q Consensus 8 ~~~~riavl~SG~-Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~~~~~~i~~~l 86 (263)
..+.||.+.-+|- |++-.+=. .+......++++.-.-..+.--..+..|-+.+.-+..++..+-...+....+++.+
T Consensus 10 g~rprvlvak~GlDgHd~gakv--ia~~l~d~GfeVi~~g~~~tp~e~v~aA~~~dv~vIgvSsl~g~h~~l~~~lve~l 87 (143)
T COG2185 10 GARPRVLVAKLGLDGHDRGAKV--IARALADAGFEVINLGLFQTPEEAVRAAVEEDVDVIGVSSLDGGHLTLVPGLVEAL 87 (143)
T ss_pred CCCceEEEeccCccccccchHH--HHHHHHhCCceEEecCCcCCHHHHHHHHHhcCCCEEEEEeccchHHHHHHHHHHHH
Confidence 3567888877776 33322211 00111233678876666666567788888999999999887766667788888877
Q ss_pred cccc
Q psy13615 87 GAKY 90 (263)
Q Consensus 87 ~~~~ 90 (263)
++
T Consensus 88 --re 89 (143)
T COG2185 88 --RE 89 (143)
T ss_pred --HH
Confidence 66
No 123
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=44.72 E-value=46 Score=32.14 Aligned_cols=66 Identities=21% Similarity=0.244 Sum_probs=40.8
Q ss_pred CCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCC
Q psy13615 184 DKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEG 261 (263)
Q Consensus 184 d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~g 261 (263)
.-|..||--+..+|.+..++...+-++ .....+++.+-.+ |=.=+.+.....+.+ .+++|+|+||.
T Consensus 226 p~gvhtgdsi~vapaqtl~d~eyq~~r-~~~~~iir~igi~-----G~~niQ~av~~~~~~------~~viEvNpRvS 291 (400)
T COG0458 226 PMGVHTGDSITVAPAQTLTDKEYQMLR-DAAIKVIREIGIE-----GGCNIQFAVDPGGGE------LYVIEINPRVS 291 (400)
T ss_pred cccccccceeeeccccccccHHHHHHH-HHHHHHHHHhccc-----CCCceeEEEcCCCce------EEEEEecCCcC
Confidence 348889988888999888877766553 3444555555322 333333442222222 47999999986
No 124
>cd02204 PurL_repeat2 PurL subunit of the formylglycinamide ribonucleotide amidotransferase (FGAR-AT), second repeat. FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, phosphate, and glutamate in the fourth step of the purine biosynthetic pathway. In eukaryotes and Gram-negative bacteria, FGAR-AT is encoded by the purL gene as a multidomain protein with a molecular mass of about 140 kDa. In Gram-positive bacteria and archaea FGAR-AT is a complex of three proteins: PurS, PurL, and PurQ. PurL itself contains two tandem N- and C-terminal domains (four domains altogether). The N-terminal domains bind ATP and are related to the ATP-binding domains of HypE, ThiL, SelD and PurM.
Probab=44.28 E-value=49 Score=29.20 Aligned_cols=74 Identities=12% Similarity=0.039 Sum_probs=42.7
Q ss_pred HHHHHHHHHh--ccccCCCCceeeeccccccCCCCcCC-CcEEEeeeeeEEeecCCcCCccccccCCcEEEEecCCCCCc
Q psy13615 77 SNSLQVMQKV--GAKYSDIAPFSQDGGETAELPGLYQP-GDYDLAGFAVGAVEKASLLPKVKDVAAGDVVIALPSSGIHS 153 (263)
Q Consensus 77 ~~~~~i~~~l--~~~~~~~~~~~~~gge~~~l~~~~~~-d~i~LAG~m~~~~~~~~~in~hpsl~~g~~ii~Lp~~G~~~ 153 (263)
...+++++++ .|+. +++.++||.|..-++.-.. ..-.+..++.+.+++.+.+-.-...++||.|+.....|.+.
T Consensus 72 ~~l~~~~~g~~~~~~~---~gv~ivGG~t~~~~~~~~~~~~~~~~~t~~G~~~~~~~~~~~~~a~~Gd~i~~~g~~g~~~ 148 (264)
T cd02204 72 GQLVEAVLGLGDACRA---LGTPVIGGKDSLYNETEGVAIPPTLVIGAVGVVDDVRKIVTLDFKKEGDLLYLIGETKDEL 148 (264)
T ss_pred HHHHHHHHHHHHHHHH---hCCCcccceeCCccCCCCcccCCcCeEEEEEEccChhhccCcccCCCCCEEEEECCCCCCC
Confidence 4566777877 6677 9999999998532211000 00123334556665433322102246899999888766654
No 125
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=43.88 E-value=31 Score=32.52 Aligned_cols=51 Identities=18% Similarity=0.191 Sum_probs=34.3
Q ss_pred CCccEEEEEcCcchhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCE
Q psy13615 9 QRKRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPT 65 (263)
Q Consensus 9 ~~~riavl~SG~Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~ 65 (263)
.+.|++|+++|-|.+....+.+ . . -.+++++|++.++ ..+-+.|+++|+|.
T Consensus 2 ~~~rVgViG~~~G~~h~~al~~---~-~-~~~eLvaV~d~~~-erA~~~A~~~gi~~ 52 (343)
T TIGR01761 2 DVQSVVVCGTRFGQFYLAAFAA---A-P-ERFELAGILAQGS-ERSRALAHRLGVPL 52 (343)
T ss_pred CCcEEEEEeHHHHHHHHHHHHh---C-C-CCcEEEEEEcCCH-HHHHHHHHHhCCCc
Confidence 4679999999667654433311 1 1 0378998888664 45677899999983
No 126
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]
Probab=42.99 E-value=92 Score=28.62 Aligned_cols=45 Identities=20% Similarity=0.245 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHhcCCC-eEEEEeeccccccCCceeeecCcceeeeeCCCCCCC
Q psy13615 208 EIHDTILMRVIKKMIAEGTP-FVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGDP 263 (263)
Q Consensus 208 ~i~~~il~~~i~~~~~eg~~-~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~gdp 263 (263)
++++.++..++++. +.++ ..|-..+.+... -.+-|+|+|+|+--|
T Consensus 214 e~k~~~~~~Ai~aV--eci~Gl~GYVGVDlVls---------D~pYvIEINpR~TTp 259 (307)
T COG1821 214 ELKREAFEEAIRAV--ECIPGLNGYVGVDLVLS---------DEPYVIEINPRPTTP 259 (307)
T ss_pred HHHHHHHHHHHHHH--HhhccccceeeEEEEec---------CCcEEEEecCCCCcc
Confidence 33445555556654 3333 344444455433 455688999998544
No 127
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=42.49 E-value=1.6e+02 Score=22.90 Aligned_cols=48 Identities=8% Similarity=-0.058 Sum_probs=37.9
Q ss_pred CceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCHHHHHHHHHHh
Q psy13615 39 RAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLILSNSLQVMQKV 86 (263)
Q Consensus 39 ~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~~~~~~i~~~l 86 (263)
++++.-.-.|.|....++.|++.+-.+..++.......+..+++++.+
T Consensus 27 G~~vi~lG~~vp~e~~~~~a~~~~~d~V~iS~~~~~~~~~~~~~~~~L 74 (122)
T cd02071 27 GFEVIYTGLRQTPEEIVEAAIQEDVDVIGLSSLSGGHMTLFPEVIELL 74 (122)
T ss_pred CCEEEECCCCCCHHHHHHHHHHcCCCEEEEcccchhhHHHHHHHHHHH
Confidence 579988888888888889999999888888766544446677777777
No 128
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea.
Probab=42.45 E-value=55 Score=30.90 Aligned_cols=54 Identities=26% Similarity=0.369 Sum_probs=34.5
Q ss_pred ccEEEEEcCc--chhHHHHHHHhccccCCCCceEEEEEecC-------C--CC-------hhhHHHHHcCCCEEEeeCC
Q psy13615 11 KRVAVLISGT--GTNLKSLLEATSNRSDIMRAEIVLVVSNK-------H--NV-------EGLNIARNAGIPTKVSTYK 71 (263)
Q Consensus 11 ~riavl~SG~--Gsnl~al~~~~~~~~~~l~~~iv~Visn~-------~--~a-------~gl~~A~~~gIP~~~v~~~ 71 (263)
+|+++..||. .|-+..++. +. +.+|.++..+. . .| .+.+.|+++|||..+++..
T Consensus 1 ~kVlValSGGvDSsv~a~lL~----~~---G~~V~~v~~~~~~~~~~~~~~~c~~~~~~~~a~~va~~lgIp~~vid~~ 72 (352)
T TIGR00420 1 KKVIVGLSGGVDSSVSAYLLK----QQ---GYEVVGVFMKNWEEDDKNDGHGCTSAEDLRDAQAICEKLGIPLEKVNFQ 72 (352)
T ss_pred CeEEEEEeCCHHHHHHHHHHH----Hc---CCeEEEEEEEcccccccccccCcCCHHHHHHHHHHHHHcCCCEEEEECH
Confidence 4799999998 344444441 22 35787777631 0 11 2356789999999998763
No 129
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=41.86 E-value=98 Score=27.47 Aligned_cols=55 Identities=16% Similarity=0.279 Sum_probs=36.8
Q ss_pred CCccEEEEEcCc--chhHHHHHHHhccccCCCCceEEEEEecCCC------ChhhHHHHHcCCCEEEeeC
Q psy13615 9 QRKRVAVLISGT--GTNLKSLLEATSNRSDIMRAEIVLVVSNKHN------VEGLNIARNAGIPTKVSTY 70 (263)
Q Consensus 9 ~~~riavl~SG~--Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~------a~gl~~A~~~gIP~~~v~~ 70 (263)
...+++|..||. .|-+..++. +. +.++.++-.|.+. ..+.+.|+++|||..+++.
T Consensus 11 ~~~~vlVa~SGGvDSs~ll~la~----~~---g~~v~av~~~~~~~~~~e~~~a~~~a~~lgi~~~ii~~ 73 (252)
T TIGR00268 11 EFKKVLIAYSGGVDSSLLAAVCS----DA---GTEVLAITVVSPSISPRELEDAIIIAKEIGVNHEFVKI 73 (252)
T ss_pred hcCCEEEEecCcHHHHHHHHHHH----Hh---CCCEEEEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEc
Confidence 356899999998 344444331 21 3467777777543 2456788999999998875
No 130
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=40.25 E-value=49 Score=28.27 Aligned_cols=34 Identities=26% Similarity=0.181 Sum_probs=26.0
Q ss_pred EEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCC
Q psy13615 42 IVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLI 75 (263)
Q Consensus 42 iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~ 75 (263)
-+.|+||+....+.-+|+++|||+..--.+.+..
T Consensus 64 ~v~vvSNn~e~RV~~~~~~l~v~fi~~A~KP~~~ 97 (175)
T COG2179 64 KVVVVSNNKESRVARAAEKLGVPFIYRAKKPFGR 97 (175)
T ss_pred EEEEEeCCCHHHHHhhhhhcCCceeecccCccHH
Confidence 4567888878888888999999987766666433
No 131
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=39.91 E-value=56 Score=28.58 Aligned_cols=27 Identities=26% Similarity=0.255 Sum_probs=17.1
Q ss_pred CCCeEEEEeeccccccCCceeeecCcceeeeeCCCCC
Q psy13615 225 GTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEG 261 (263)
Q Consensus 225 g~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~g 261 (263)
++.|.| +.++.+..+ ++.++|+|+|+|
T Consensus 231 ~~~~~~---vD~~~~~~g-------~~~viEiN~~p~ 257 (277)
T TIGR00768 231 GLDVVG---IDLLESEDR-------GLLVNEVNPNPE 257 (277)
T ss_pred CCCeEE---EEEEEcCCC-------CeEEEEEcCCcc
Confidence 554444 466644332 356899999987
No 132
>cd02193 PurL Formylglycinamide ribonucleotide amidotransferase (FGAR-AT) catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, phosphate, and glutamate in the fourth step of the purine biosynthetic pathway. In eukaryotes and Gram-negative bacteria, FGAR-AT is encoded by the purL gene as a multidomain protein with a molecular mass of about 140 kDa. In Gram-positive bacteria and archaea FGAR-AT is a complex of three proteins: PurS, PurL, and PurQ. PurL itself contains two tandem N- and C-terminal domains (four domains altogether). The N-terminal domains bind ATP and are related to the ATP-binding domains of HypE, ThiL, SelD and PurM.
Probab=39.81 E-value=75 Score=28.49 Aligned_cols=79 Identities=11% Similarity=-0.001 Sum_probs=46.5
Q ss_pred CEEEeeCCCCC-----CHHHHHHHHHHh--ccccCCCCceeeeccccccCCCC-c--------CCCcEEEeeeeeEEeec
Q psy13615 64 PTKVSTYKHTL-----ILSNSLQVMQKV--GAKYSDIAPFSQDGGETAELPGL-Y--------QPGDYDLAGFAVGAVEK 127 (263)
Q Consensus 64 P~~~v~~~~~~-----~~~~~~~i~~~l--~~~~~~~~~~~~~gge~~~l~~~-~--------~~d~i~LAG~m~~~~~~ 127 (263)
|..+.+...+. +.+..+++++++ .|+. .++.++||.+..-+.. | ..+...+..++.+.++.
T Consensus 42 P~~~~~~l~~~~~~p~~~~~l~~~~~gi~~a~~~---~g~pivgG~~s~~~~~~~~~~~~~~~~~~~p~~~vt~~G~~~~ 118 (272)
T cd02193 42 PIALSANWMASAGHPGEDAILYDAVKGVAELCNQ---LGLPIPVGKDRMSMKTRWQEGNEQREMTHPPSLVISAFGRVRD 118 (272)
T ss_pred ceEEeeecccCCCCCCHHHHHHHHHHHHHHHhHh---hCCcccCCEeccccceecccCCCceEEEeCCEEEEEEEEEecC
Confidence 66666544332 125677788888 6666 9999999999764321 0 01112344456776664
Q ss_pred CCcCCccccccCCcEEEEe
Q psy13615 128 ASLLPKVKDVAAGDVVIAL 146 (263)
Q Consensus 128 ~~~in~hpsl~~g~~ii~L 146 (263)
.+.+. .....+||.|+.+
T Consensus 119 ~~~~~-~~~~~~Gd~I~~~ 136 (272)
T cd02193 119 DRHTL-PQLSTEGNALLLI 136 (272)
T ss_pred cceec-ccCCCCCCEEEEE
Confidence 33322 1223689999866
No 133
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=39.61 E-value=66 Score=35.34 Aligned_cols=56 Identities=16% Similarity=0.148 Sum_probs=35.1
Q ss_pred eEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCC
Q psy13615 193 GAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEG 261 (263)
Q Consensus 193 ga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~g 261 (263)
...+|.+.++++..+++. +. +.+.+ +.+.|.|..-+.|+.+..+ ...++|+|+|++
T Consensus 239 ie~aPa~~L~~e~r~~I~-~~---A~kla--~aLgy~G~gtVEFlvd~dg-------~~yfIEVNPRiq 294 (1143)
T TIGR01235 239 VEVAPAPYLSREVRDEIA-EY---AVKLA--KAVNYINAGTVEFLVDNDG-------KFYFIEVNPRIQ 294 (1143)
T ss_pred EEEeCCCCCCHHHHHHHH-HH---HHHHH--HHcCCcceEEEEEEEeCCC-------cEEEEEeecCCC
Confidence 445676667776666554 22 22222 2456888888888854332 246899999985
No 134
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp
Probab=39.34 E-value=80 Score=28.37 Aligned_cols=40 Identities=15% Similarity=0.107 Sum_probs=29.2
Q ss_pred HHHHHHHHHhcCCCe-EEEEeeccccccCCceeeecCcceeeeeCCCCC
Q psy13615 214 LMRVIKKMIAEGTPF-VGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEG 261 (263)
Q Consensus 214 l~~~i~~~~~eg~~~-~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~g 261 (263)
...+.+.| ++..+. .|.|..+++++..+ ++ -++|.|++++
T Consensus 194 a~~ia~~l-e~~~~~~~gElGiDl~iD~~g-~i------WliEvN~kP~ 234 (262)
T PF14398_consen 194 ALEIAQAL-EKHFGGHLGELGIDLGIDKNG-KI------WLIEVNSKPG 234 (262)
T ss_pred HHHHHHHH-HHhcCCceeEEEEEEEEcCCC-CE------EEEEEeCCCC
Confidence 33444444 566666 99999999977655 34 6999999987
No 135
>cd00319 Ribosomal_S12_like Ribosomal protein S12-like family; composed of prokaryotic 30S ribosomal protein S12, eukaryotic 40S ribosomal protein S23 and similar proteins. S12 and S23 are located at the interface of the large and small ribosomal subunits, adjacent to the decoding center. They play an important role in translocation during the peptide elongation step of protein synthesis. They are also involved in important RNA and protein interactions. Ribosomal protein S12 is essential for maintenance of a pretranslocation state and, together with S13, functions as a control element for the rRNA- and tRNA-driven movements of translocation. S23 interacts with domain III of the eukaryotic elongation factor 2 (eEF2), which catalyzes translocation. Mutations in S12 and S23 have been found to affect translational accuracy. Antibiotics such as streptomycin may also bind S12/S23 and cause the ribosome to misread the genetic code.
Probab=38.96 E-value=21 Score=27.51 Aligned_cols=24 Identities=38% Similarity=0.588 Sum_probs=21.7
Q ss_pred eeeeeccCCccEEEEEcCcchhHH
Q psy13615 2 VVKTRMVQRKRVAVLISGTGTNLK 25 (263)
Q Consensus 2 ~~~~~m~~~~riavl~SG~Gsnl~ 25 (263)
++++|.++.++|-.++-|.|+|+|
T Consensus 37 ~arV~L~ngk~v~ayIPg~Gh~lq 60 (95)
T cd00319 37 VAKVRLTSGYEVTAYIPGEGHNLQ 60 (95)
T ss_pred EEEEEccCCCEEEEECCCCCcccc
Confidence 578999999999999999998887
No 136
>PF00586 AIRS: AIR synthase related protein, N-terminal domain; InterPro: IPR000728 This family includes Hydrogen expression/formation protein, HypE, which may be involved in the maturation of NifE hydrogenase; AIR synthase and FGAM synthase, which are involved in de novo purine biosynthesis; and selenide, water dikinase, an enzyme which synthesizes selenophosphate from selenide and ATP.; GO: 0003824 catalytic activity; PDB: 3VIU_A 2Z1T_A 2Z1U_A 3C9U_B 3C9S_A 3C9R_A 1VQV_A 3C9T_B 3M84_A 3QTY_A ....
Probab=38.93 E-value=12 Score=27.91 Aligned_cols=47 Identities=11% Similarity=0.095 Sum_probs=31.0
Q ss_pred ecCCCChhhHHHHHcCCCEEEeeCCCCCC---HHHHHHHHHHh--ccccCCCCceeeecccc
Q psy13615 47 SNKHNVEGLNIARNAGIPTKVSTYKHTLI---LSNSLQVMQKV--GAKYSDIAPFSQDGGET 103 (263)
Q Consensus 47 sn~~~a~gl~~A~~~gIP~~~v~~~~~~~---~~~~~~i~~~l--~~~~~~~~~~~~~gge~ 103 (263)
.|+.-+.|.+ |........+.+ .+..+++++++ .|++ .++.++||.|
T Consensus 45 ~sDl~a~Ga~-------P~~~~~~l~~~~~~~~~~l~~~~~Gi~~~~~~---~g~~ivGG~T 96 (96)
T PF00586_consen 45 LSDLAAMGAK-------PLAILDSLGLPNPESPEELKEIVKGIAEACRE---FGIPIVGGDT 96 (96)
T ss_dssp HHHHHTTTEE-------EEEEEEEEEESTTSBHHHHHHHHHHHHHHHHH---HT-EEEEEEE
T ss_pred HHHHHhcCCe-------eeEEEEEEEcCCCCCHHHHHHHHHHHHHHHHH---hCCcEeCcCC
Confidence 3344455555 766665544433 37788888888 6677 9999999986
No 137
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=38.43 E-value=1.1e+02 Score=28.62 Aligned_cols=60 Identities=15% Similarity=0.061 Sum_probs=35.5
Q ss_pred CccEEEEEcCc-chhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCC
Q psy13615 10 RKRVAVLISGT-GTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHT 73 (263)
Q Consensus 10 ~~riavl~SG~-Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~ 73 (263)
|+||.+-+.|+ |+-+-+|. ..+.-.+-+++|..+.+++..- .+...++|+|...++...+
T Consensus 1 ~~~i~~~~GGTGGHi~Pala--~a~~l~~~g~~v~~vg~~~~~e--~~l~~~~g~~~~~~~~~~l 61 (352)
T PRK12446 1 MKKIVFTGGGSAGHVTPNLA--IIPYLKEDNWDISYIGSHQGIE--KTIIEKENIPYYSISSGKL 61 (352)
T ss_pred CCeEEEEcCCcHHHHHHHHH--HHHHHHhCCCEEEEEECCCccc--cccCcccCCcEEEEeccCc
Confidence 45666666666 77777765 2211111257888887766432 2335567899888865443
No 138
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=38.15 E-value=2.1e+02 Score=22.95 Aligned_cols=60 Identities=8% Similarity=-0.098 Sum_probs=43.5
Q ss_pred chhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCHHHHHHHHHHh
Q psy13615 21 GTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLILSNSLQVMQKV 86 (263)
Q Consensus 21 Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~~~~~~i~~~l 86 (263)
|.|+-+.+ ... . +++|+-.-.+.+....++.|++.+-.+..++...-...+...++++.+
T Consensus 18 g~~iv~~~--l~~--~--GfeVi~lg~~~s~e~~v~aa~e~~adii~iSsl~~~~~~~~~~~~~~L 77 (132)
T TIGR00640 18 GAKVIATA--YAD--L--GFDVDVGPLFQTPEEIARQAVEADVHVVGVSSLAGGHLTLVPALRKEL 77 (132)
T ss_pred HHHHHHHH--HHh--C--CcEEEECCCCCCHHHHHHHHHHcCCCEEEEcCchhhhHHHHHHHHHHH
Confidence 66666654 221 2 578877777766667889999999999999876644557788888877
No 139
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=38.03 E-value=49 Score=30.70 Aligned_cols=52 Identities=13% Similarity=0.206 Sum_probs=33.1
Q ss_pred CcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCC
Q psy13615 196 CPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEG 261 (263)
Q Consensus 196 ~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~g 261 (263)
.|.+ ++++..++++ ++...+.+.+ + +.|..-+.++.+..+. +-++|+|.++|
T Consensus 260 ~Pa~-l~~~~~~~i~-~~a~~~~~~L---g--~~G~~rvDf~l~~~g~-------~~llEINt~Pg 311 (343)
T PRK14568 260 VPAD-ISAEERSRVQ-ETAKAIYRAL---G--CRGLARVDMFLQEDGT-------VVLNEVNTLPG 311 (343)
T ss_pred eCCC-CCHHHHHHHH-HHHHHHHHHh---C--CCcEEEEEEEEeCCCC-------EEEEEeeCCCC
Confidence 4544 4666666654 4555555544 3 5699999999654332 34789999987
No 140
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=37.83 E-value=84 Score=24.93 Aligned_cols=34 Identities=21% Similarity=0.310 Sum_probs=27.3
Q ss_pred CceEEEEEecCCC-ChhhHHHHHcCCCEEEeeCCC
Q psy13615 39 RAEIVLVVSNKHN-VEGLNIARNAGIPTKVSTYKH 72 (263)
Q Consensus 39 ~~~iv~Visn~~~-a~gl~~A~~~gIP~~~v~~~~ 72 (263)
..+.++++|.+.| ++.+++++++|..+.++....
T Consensus 99 ~~d~ivLvSgD~Df~~~i~~lr~~G~~V~v~~~~~ 133 (149)
T cd06167 99 RIDTIVLVSGDSDFVPLVERLRELGKRVIVVGFEA 133 (149)
T ss_pred CCCEEEEEECCccHHHHHHHHHHcCCEEEEEccCc
Confidence 4577777777666 688999999999999998763
No 141
>PRK12999 pyruvate carboxylase; Reviewed
Probab=37.81 E-value=68 Score=35.26 Aligned_cols=56 Identities=23% Similarity=0.162 Sum_probs=33.2
Q ss_pred eEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCC
Q psy13615 193 GAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEG 261 (263)
Q Consensus 193 ga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~g 261 (263)
...+|.+.++++..+++. ..+.+.+..-| |.|..-+.++.+..+ +..++|+|+|++
T Consensus 243 ie~aP~~~L~~~~~~~l~----~~A~kl~~alg--y~G~gtVEflvd~dg-------~~yfIEINpRlq 298 (1146)
T PRK12999 243 VEIAPAPGLSEELRERIC----EAAVKLARAVG--YVNAGTVEFLVDADG-------NFYFIEVNPRIQ 298 (1146)
T ss_pred EEEcCCCCCCHHHHHHHH----HHHHHHHHHcC--CCceEEEEEEEECCC-------CEEEEEEECCCC
Confidence 345666666776665554 33334443334 566656777743221 467899999986
No 142
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=37.75 E-value=77 Score=30.78 Aligned_cols=63 Identities=17% Similarity=0.223 Sum_probs=40.0
Q ss_pred eccCCccEEEEEcCc--chhHHHHHHHhccccCCCCceEEEEEecCC---CC-----hhhHHHHHcCCCEEEeeC
Q psy13615 6 RMVQRKRVAVLISGT--GTNLKSLLEATSNRSDIMRAEIVLVVSNKH---NV-----EGLNIARNAGIPTKVSTY 70 (263)
Q Consensus 6 ~m~~~~riavl~SG~--Gsnl~al~~~~~~~~~~l~~~iv~Visn~~---~a-----~gl~~A~~~gIP~~~v~~ 70 (263)
.+-...||++-+||. .+.|..++.. .+....+.++.++-.|+. .+ .+.+.|+++|||..+.+.
T Consensus 11 ~l~~~~~ilvavSGG~DS~~Ll~~l~~--~~~~~~~~~l~a~hvnhglr~~s~~~~~~~~~~~~~l~i~~~~~~~ 83 (436)
T PRK10660 11 QLLTSRQILVAFSGGLDSTVLLHLLVQ--WRTENPGVTLRAIHVHHGLSPNADSWVKHCEQVCQQWQVPLVVERV 83 (436)
T ss_pred hcCCCCeEEEEecCCHHHHHHHHHHHH--HHHhcCCCeEEEEEEeCCCCcchHHHHHHHHHHHHHcCCcEEEEEE
Confidence 344457899999998 3444444422 111122468999999953 22 234568999999888753
No 143
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=37.27 E-value=1.3e+02 Score=24.52 Aligned_cols=59 Identities=20% Similarity=0.230 Sum_probs=35.3
Q ss_pred cEEEEEcCc--chhHHHHHHHhccccCCCCceEEEEEecCCC--------ChhhHHHHHcCCCEEEeeCC
Q psy13615 12 RVAVLISGT--GTNLKSLLEATSNRSDIMRAEIVLVVSNKHN--------VEGLNIARNAGIPTKVSTYK 71 (263)
Q Consensus 12 riavl~SG~--Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~--------a~gl~~A~~~gIP~~~v~~~ 71 (263)
||+|..||. .+-+..++... ......+.++.++..|... ...-+.|+++|+|...++..
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 69 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKL-QRRYPYGFELEALTVDEGIPGYRDESLEVVERLAEELGIELEIVSFK 69 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHH-HhhcCCCeEEEEEEEECCCCCCcHHHHHHHHHHHHHcCCceEEEehh
Confidence 689999998 34344444221 1111114577777777432 13456789999999888754
No 144
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=37.20 E-value=1.3e+02 Score=25.03 Aligned_cols=57 Identities=21% Similarity=0.260 Sum_probs=33.5
Q ss_pred cEEEEEcCc--chhHHHHHHHhccccCCCCceEEEEEecCC---CC-----hhhHHHHHcCCCEEEeeCC
Q psy13615 12 RVAVLISGT--GTNLKSLLEATSNRSDIMRAEIVLVVSNKH---NV-----EGLNIARNAGIPTKVSTYK 71 (263)
Q Consensus 12 riavl~SG~--Gsnl~al~~~~~~~~~~l~~~iv~Visn~~---~a-----~gl~~A~~~gIP~~~v~~~ 71 (263)
||+|-+||. .+.|..++... + ...+.++.++..|+. .. ...+.|+++|||.++....
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~--~-~~~~~~~~~~~vdh~~~~~s~~~~~~v~~~~~~~~i~~~~~~~~ 67 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKEL--R-RRNGIKLIAVHVDHGLREESDEEAEFVEEICEQLGIPLYIVRID 67 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHH--H-TTTTTEEEEEEEE-STSCCHHHHHHHHHHHHHHTT-EEEEEE--
T ss_pred CEEEEEcCCHHHHHHHHHHHHH--H-HhcCCCeEEEEEecCCCcccchhHHHHHHHHHhcCCceEEEEee
Confidence 688889997 34444444221 1 233458888888842 21 5678899999999988754
No 145
>KOG2741|consensus
Probab=37.08 E-value=1.3e+02 Score=28.68 Aligned_cols=61 Identities=16% Similarity=0.091 Sum_probs=40.3
Q ss_pred ccCCccEEEEEcCc-chhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCH
Q psy13615 7 MVQRKRVAVLISGT-GTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLIL 76 (263)
Q Consensus 7 m~~~~riavl~SG~-Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~ 76 (263)
+....|++++.-|+ ++.+-..+. ......+.|++|.+ +..-.+.+.|+++++| +.+.|++.
T Consensus 3 ~s~~ir~Gi~g~g~ia~~f~~al~----~~p~s~~~Ivava~-~s~~~A~~fAq~~~~~----~~k~y~sy 64 (351)
T KOG2741|consen 3 DSATIRWGIVGAGRIARDFVRALH----TLPESNHQIVAVAD-PSLERAKEFAQRHNIP----NPKAYGSY 64 (351)
T ss_pred CCceeEEEEeehhHHHHHHHHHhc----cCcccCcEEEEEec-ccHHHHHHHHHhcCCC----CCccccCH
Confidence 34456899988887 555544431 11223578888776 4566788999999998 55666664
No 146
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=37.05 E-value=34 Score=30.92 Aligned_cols=63 Identities=24% Similarity=0.378 Sum_probs=35.8
Q ss_pred CccEEEEEcCcchhHHHH-HHHhccc-cCCCCceEEEEEecCCCChhhHHHHH----cCCCEEEeeCCC
Q psy13615 10 RKRVAVLISGTGTNLKSL-LEATSNR-SDIMRAEIVLVVSNKHNVEGLNIARN----AGIPTKVSTYKH 72 (263)
Q Consensus 10 ~~riavl~SG~Gsnl~al-~~~~~~~-~~~l~~~iv~Visn~~~a~gl~~A~~----~gIP~~~v~~~~ 72 (263)
+..|-+++-|+|++|+-= +++...+ ...+..|.+.++|=++.++|=..||+ .|||+.+++...
T Consensus 28 RedI~vrv~gsGaKm~pe~~e~~~~~~~~~~~pdf~I~isPN~~~PGP~~ARE~l~~~~iP~IvI~D~p 96 (276)
T PF01993_consen 28 REDIDVRVVGSGAKMGPEDVEEVVTKMLKEWDPDFVIVISPNAAAPGPTKAREMLSAKGIPCIVISDAP 96 (276)
T ss_dssp -SSEEEEEEEEET--SHHHHHHHHHHHHHHH--SEEEEE-S-TTSHHHHHHHHHHHHSSS-EEEEEEGG
T ss_pred cCCceEEEeccCCCCCHHHHHHHHHHHHHhhCCCEEEEECCCCCCCCcHHHHHHHHhCCCCEEEEcCCC
Confidence 445777777788877532 1110000 01234689999999999998777765 789999998644
No 147
>cd03368 Ribosomal_S12 S12-like family, 30S ribosomal protein S12 subfamily; S12 is located at the interface of the large and small ribosomal subunits of prokaryotes, chloroplasts and mitochondria, where it plays an important role in both tRNA and ribosomal subunit interactions. S12 is essential for maintenance of a pretranslocation state and, together with S13, functions as a control element for the rRNA- and tRNA-driven movements of translocation. Antibiotics such as streptomycin bind S12 and cause the ribosome to misread the genetic code.
Probab=36.56 E-value=24 Score=27.85 Aligned_cols=24 Identities=38% Similarity=0.648 Sum_probs=21.9
Q ss_pred eeeeeccCCccEEEEEcCcchhHH
Q psy13615 2 VVKTRMVQRKRVAVLISGTGTNLK 25 (263)
Q Consensus 2 ~~~~~m~~~~riavl~SG~Gsnl~ 25 (263)
++++|.++.++|..++-|.|+|+|
T Consensus 50 varV~L~ngk~v~AyIPG~Ghnlq 73 (108)
T cd03368 50 VARVRLSNGKEVTAYIPGEGHNLQ 73 (108)
T ss_pred eEEEEecCCCEEEEEcCCCCCCcc
Confidence 578999999999999999999888
No 148
>PRK14090 phosphoribosylformylglycinamidine synthase II; Provisional
Probab=34.63 E-value=70 Score=32.62 Aligned_cols=82 Identities=20% Similarity=0.217 Sum_probs=52.5
Q ss_pred CEEEeeCCCCCCHHHHHHHHHHh--ccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEEeecCCcCCccccccCCc
Q psy13615 64 PTKVSTYKHTLILSNSLQVMQKV--GAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKDVAAGD 141 (263)
Q Consensus 64 P~~~v~~~~~~~~~~~~~i~~~l--~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~~~~~~~in~hpsl~~g~ 141 (263)
|...++...+. ...+++++++ .|+. .|+.++||+|..-+.+ ...-++ ...+.|++++.+++.. ...++||
T Consensus 100 Pialld~L~~~--~~l~~vv~GI~~~~n~---~GVP~VGGdt~~~~~y-~~~plv-~vt~vG~v~~~~iv~~-~~a~~GD 171 (601)
T PRK14090 100 PTAIFDSLHMS--RIIDGIIEGIADYGNS---IGVPTVGGELRISSLY-AHNPLV-NVLAAGVVRNDMLVDS-KASRPGQ 171 (601)
T ss_pred hheeEEcCChH--HHHHHHHHHHHHHHHH---hCCCEeeEEEEEeCCc-cCCCce-EEEEEEEEcCcccccc-CCCCCCC
Confidence 77777655543 4566677777 5566 9999999998875443 333222 3346777765555544 4457999
Q ss_pred EEEEecC----CCCCc
Q psy13615 142 VVIALPS----SGIHS 153 (263)
Q Consensus 142 ~ii~Lp~----~G~~~ 153 (263)
.|+.+=. .|.|+
T Consensus 172 ~Ivl~G~~tGrdGi~G 187 (601)
T PRK14090 172 VIVIFGGATGRDGIHG 187 (601)
T ss_pred EEEEEcCCCCCCCcch
Confidence 9987632 35654
No 149
>COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism]
Probab=34.47 E-value=95 Score=29.81 Aligned_cols=54 Identities=20% Similarity=0.161 Sum_probs=41.1
Q ss_pred CccEEEEEcCc--chhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEe
Q psy13615 10 RKRVAVLISGT--GTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVS 68 (263)
Q Consensus 10 ~~riavl~SG~--Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v 68 (263)
++|+.+|.|.. |++...++++ ..+ .++|+++..++.-..-++.+++++-....+
T Consensus 1 ~k~i~iLGSTGSIG~qtLdVi~~---~p~--~f~vval~ag~n~~~l~~q~~~f~P~~v~~ 56 (385)
T COG0743 1 MKKLTILGSTGSIGTQTLDVIRR---NPD--KFEVVALAAGKNVELLAEQIREFKPKYVVI 56 (385)
T ss_pred CceEEEEecCCchhHHHHHHHHh---CCC--cEEEEEEecCCcHHHHHHHHHHhCCceEEe
Confidence 57899999976 8888877743 212 478999999986677789999999555444
No 150
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=34.43 E-value=2.5e+02 Score=22.66 Aligned_cols=48 Identities=8% Similarity=-0.089 Sum_probs=39.8
Q ss_pred CceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCHHHHHHHHHHh
Q psy13615 39 RAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLILSNSLQVMQKV 86 (263)
Q Consensus 39 ~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~~~~~~i~~~l 86 (263)
+++++-+-.|.|....++.|++.+..+..++...........++++.+
T Consensus 31 G~eVi~LG~~vp~e~i~~~a~~~~~d~V~lS~~~~~~~~~~~~~~~~L 78 (137)
T PRK02261 31 GFEVINLGVMTSQEEFIDAAIETDADAILVSSLYGHGEIDCRGLREKC 78 (137)
T ss_pred CCEEEECCCCCCHHHHHHHHHHcCCCEEEEcCccccCHHHHHHHHHHH
Confidence 589999999998888899999999888888876655556777777777
No 151
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=33.74 E-value=78 Score=28.66 Aligned_cols=27 Identities=19% Similarity=0.154 Sum_probs=17.3
Q ss_pred cCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCC
Q psy13615 224 EGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEG 261 (263)
Q Consensus 224 eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~g 261 (263)
-|..|.| +.++.+. +|..|+|+|.++|
T Consensus 240 lg~~~~g---vD~~~~~--------~g~~vlEvN~~pg 266 (300)
T PRK10446 240 MALDVAG---VDILRAN--------RGPLVMEVNASPG 266 (300)
T ss_pred hCCCEEE---EEEEEcC--------CCcEEEEEECCCC
Confidence 3665554 4556433 3456889999987
No 152
>PRK03868 glucose-6-phosphate isomerase; Provisional
Probab=33.58 E-value=86 Score=30.30 Aligned_cols=59 Identities=12% Similarity=0.055 Sum_probs=37.5
Q ss_pred cEEEEEcCcchhHHHHHHHhccc-cCC---CCceEEEEEecCCCChhhHHHHHcCCCEEEeeCC
Q psy13615 12 RVAVLISGTGTNLKSLLEATSNR-SDI---MRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYK 71 (263)
Q Consensus 12 riavl~SG~Gsnl~al~~~~~~~-~~~---l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~ 71 (263)
.+.+.+|-+||..+-+..+...+ ..+ ..+...++++++ +.+-.+.|+++|++++.++..
T Consensus 113 TlviviSKSGtT~ETl~~~~~~~~~~~~~~~~~~~~v~vTd~-~s~L~~~a~~~g~~~f~ip~~ 175 (410)
T PRK03868 113 TLFIVISKSGTTIETISIFKYLLSHFKLDQELKKNFLFITDP-DSKLEQFAKENNIKCFNIPKN 175 (410)
T ss_pred EEEEEEeCCCCCHHHHHHHHHHHHHhccccccccEEEEEecC-CchHHHhHHhcCCcEEecCCC
Confidence 47789999998888775322111 110 013444566653 455677899999999888653
No 153
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=33.37 E-value=1.6e+02 Score=24.84 Aligned_cols=85 Identities=15% Similarity=0.250 Sum_probs=52.1
Q ss_pred ccccceeEEEecCcc-eeecCCccccccccCCCCCCCCCCeeEECcccC-CCHHHHHHHHHHHHHHHHHHHHhcCCCeEE
Q psy13615 153 SNGFSLVLCFTDGKT-VKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDI-LTEAQKKEIHDTILMRVIKKMIAEGTPFVG 230 (263)
Q Consensus 153 ~~g~Sl~~ai~dg~~-~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i-~~~~~~~~i~~~il~~~i~~~~~eg~~~~G 230 (263)
..++|+. .+.+.+| +...|++..+ ...|+...+-+|. ++++..+++ +++..++++.| .|.|
T Consensus 75 ~~EiSvi-vaR~~~G~~~~yp~~en~----------~~~~il~~s~~Pa~i~~~~~~~a-~~ia~~i~~~l-----~~vG 137 (172)
T PF02222_consen 75 DREISVI-VARDQDGEIRFYPPVENV----------HRDGILHESIAPARISDEVEEEA-KEIARKIAEAL-----DYVG 137 (172)
T ss_dssp SEEEEEE-EEEETTSEEEEEEEEEEE----------EETTEEEEEEESCSS-HHHHHHH-HHHHHHHHHHH-----TSSE
T ss_pred cEEEEEE-EEEcCCCCEEEEcCceEE----------EECCEEEEEECCCCCCHHHHHHH-HHHHHHHHHHc-----CcEE
Confidence 4467764 4445454 5566666421 1235555544443 566666665 47777777766 4999
Q ss_pred EEeeccccccCCceeeecCcceeeeeCCCC
Q psy13615 231 EKKRGFTEGTVTAKVFSSRNRREKEDNPEE 260 (263)
Q Consensus 231 ~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~ 260 (263)
++-+.++.+..|-++ -|-|+-+|+
T Consensus 138 v~~VE~Fv~~~g~~v------~vNEiaPRp 161 (172)
T PF02222_consen 138 VLAVEFFVTKDGDEV------LVNEIAPRP 161 (172)
T ss_dssp EEEEEEEEETTSTEE------EEEEEESS-
T ss_pred EEEEEEEEecCCCEE------EEEeccCCc
Confidence 999999976555434 488888885
No 154
>PRK00973 glucose-6-phosphate isomerase; Provisional
Probab=32.21 E-value=1.1e+02 Score=30.11 Aligned_cols=58 Identities=16% Similarity=0.107 Sum_probs=34.5
Q ss_pred EEEEEcCcchhHHHHHHHhccc-----cC-CCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCC
Q psy13615 13 VAVLISGTGTNLKSLLEATSNR-----SD-IMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYK 71 (263)
Q Consensus 13 iavl~SG~Gsnl~al~~~~~~~-----~~-~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~ 71 (263)
..+.+|.+||.++-+..+...+ .+ .....+ .++|+.....=-+.|+++|++++.++..
T Consensus 135 l~iviSKSGtT~ET~~~f~~~~~~l~~~g~~~~~~~-vaiTd~~~g~L~~~A~~~g~~~f~ip~~ 198 (446)
T PRK00973 135 LFNVISKSGNTAETLANYLIIRGILEKLGLDPKKHL-VFTTDPEKGKLKKIAEKEGYRTLEIPEN 198 (446)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHhcCccccceE-EEEcCCCccchHHHHHHcCCcEEeeCCC
Confidence 5678999998887765321111 11 122334 4666643333355699999999888653
No 155
>cd01991 Asn_Synthase_B_C The C-terminal domain of Asparagine Synthase B. This domain is always found associated n-terminal amidotransferase domain. Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase .
Probab=31.84 E-value=98 Score=27.05 Aligned_cols=65 Identities=18% Similarity=0.161 Sum_probs=37.7
Q ss_pred eeeeccCCccEEEEEcCc-chhHHHHHHHhccccCCCCceEEEEEecCC----CChhhHHHHHcCCCEEEeeC
Q psy13615 3 VKTRMVQRKRVAVLISGT-GTNLKSLLEATSNRSDIMRAEIVLVVSNKH----NVEGLNIARNAGIPTKVSTY 70 (263)
Q Consensus 3 ~~~~m~~~~riavl~SG~-Gsnl~al~~~~~~~~~~l~~~iv~Visn~~----~a~gl~~A~~~gIP~~~v~~ 70 (263)
|+-||.+..+|+++.||. -|.+-+.+-+. . +.-+.....+..... ...+-+.|+++|++...+..
T Consensus 8 v~~~~~~~~~v~~~LSGGlDSs~va~~~~~--~-~~~~~~~~~~~~~~~~~~e~~~a~~~a~~l~~~~~~~~~ 77 (269)
T cd01991 8 VRRRLRSDVPVGVLLSGGLDSSLVAALAAR--L-LPEPVKTFSIGFGFEGSDEREYARRVAEHLGTEHHEVEF 77 (269)
T ss_pred HHHHhccCCceEEeecccHHHHHHHHHHHH--h-hCCCCceEEEeeCCCCCChHHHHHHHHHHhCCcceEEEc
Confidence 556788888999999998 44444433221 1 111112222222221 13567789999999888763
No 156
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=31.60 E-value=95 Score=27.68 Aligned_cols=60 Identities=17% Similarity=0.340 Sum_probs=39.8
Q ss_pred CccEEEEEcCcchhHH-----HHHHHhccccCCCCceEEEEEecCCCChhhHHHHH----cCCCEEEeeCCC
Q psy13615 10 RKRVAVLISGTGTNLK-----SLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARN----AGIPTKVSTYKH 72 (263)
Q Consensus 10 ~~riavl~SG~Gsnl~-----al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~----~gIP~~~v~~~~ 72 (263)
+..|.|-+-|+|.++. +.... .......|.+.++|-++.++|=..||+ .++|+.++....
T Consensus 29 Redi~vrVvgsgaKM~Pe~veaav~~---~~e~~~pDfvi~isPNpaaPGP~kARE~l~~s~~PaiiigDaP 97 (277)
T COG1927 29 REDIEVRVVGSGAKMDPECVEAAVTE---MLEEFNPDFVIYISPNPAAPGPKKAREILSDSDVPAIIIGDAP 97 (277)
T ss_pred cCCceEEEeccccccChHHHHHHHHH---HHHhcCCCEEEEeCCCCCCCCchHHHHHHhhcCCCEEEecCCc
Confidence 4456666666655443 22211 112345689999999999999877775 489999997655
No 157
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=31.48 E-value=1.1e+02 Score=23.19 Aligned_cols=22 Identities=18% Similarity=0.036 Sum_probs=15.1
Q ss_pred hhHHHHHcCCCEEEeeCCCCCC
Q psy13615 54 GLNIARNAGIPTKVSTYKHTLI 75 (263)
Q Consensus 54 gl~~A~~~gIP~~~v~~~~~~~ 75 (263)
.-+.+.++|+|+..++..+|+.
T Consensus 67 i~~~~~~~~ipv~~I~~~~Y~~ 88 (95)
T TIGR00853 67 LKKETDKKGIPVEVINGAQYGK 88 (95)
T ss_pred HHHHhhhcCCCEEEeChhhccc
Confidence 3445667788888887776644
No 158
>PRK00509 argininosuccinate synthase; Provisional
Probab=31.30 E-value=1.9e+02 Score=28.00 Aligned_cols=55 Identities=18% Similarity=0.189 Sum_probs=35.9
Q ss_pred ccEEEEEcCc-chhHHH-HHHHhccccCCCCceEEEEEecCCCC----hhhHHHHHcCC-CEEEeeCC
Q psy13615 11 KRVAVLISGT-GTNLKS-LLEATSNRSDIMRAEIVLVVSNKHNV----EGLNIARNAGI-PTKVSTYK 71 (263)
Q Consensus 11 ~riavl~SG~-Gsnl~a-l~~~~~~~~~~l~~~iv~Visn~~~a----~gl~~A~~~gI-P~~~v~~~ 71 (263)
.|+++..||. -|.+-+ ++. + +++.+|.++..|-... .+-+.|+++|+ +..+++..
T Consensus 3 ~kVvva~SGGlDSsvla~~l~----e--~lG~eViavt~d~Gq~~dle~a~~~A~~lGi~~~~viD~~ 64 (399)
T PRK00509 3 KKVVLAYSGGLDTSVIIKWLK----E--TYGCEVIAFTADVGQGEELEPIREKALKSGASEIYVEDLR 64 (399)
T ss_pred CeEEEEEcCCHHHHHHHHHHH----H--hhCCeEEEEEEecCCHHHHHHHHHHHHHcCCCeEEEEcCH
Confidence 4899999998 343333 331 1 2346889998886532 34578899998 56666654
No 159
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=30.57 E-value=2.9e+02 Score=24.66 Aligned_cols=55 Identities=16% Similarity=0.181 Sum_probs=33.2
Q ss_pred cEEEEEcCcchhHH---HHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCC
Q psy13615 12 RVAVLISGTGTNLK---SLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKH 72 (263)
Q Consensus 12 riavl~SG~Gsnl~---al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~ 72 (263)
||.+.+.|.|..++ .|+++.. ..+.++.++..++. ...+..+++|+++..++...
T Consensus 2 ~i~~~~g~~~g~~~~~~~La~~L~----~~g~eV~vv~~~~~--~~~~~~~~~g~~~~~i~~~~ 59 (348)
T TIGR01133 2 KVVLAAGGTGGHIFPALAVAEELI----KRGVEVLWLGTKRG--LEKRLVPKAGIEFYFIPVGG 59 (348)
T ss_pred eEEEEeCccHHHHhHHHHHHHHHH----hCCCEEEEEeCCCc--chhcccccCCCceEEEeccC
Confidence 78888888877775 3443321 22468877654332 22233355799998887543
No 160
>PRK04527 argininosuccinate synthase; Provisional
Probab=30.44 E-value=1.2e+02 Score=29.39 Aligned_cols=56 Identities=16% Similarity=0.080 Sum_probs=36.8
Q ss_pred CccEEEEEcCc-chh-HHHHHHHhccccCCCCceEEEEEecCCCC------hhhHHHHHcCC-CEEEeeCCC
Q psy13615 10 RKRVAVLISGT-GTN-LKSLLEATSNRSDIMRAEIVLVVSNKHNV------EGLNIARNAGI-PTKVSTYKH 72 (263)
Q Consensus 10 ~~riavl~SG~-Gsn-l~al~~~~~~~~~~l~~~iv~Visn~~~a------~gl~~A~~~gI-P~~~v~~~~ 72 (263)
++|+++..||. -|. +..++. +. +.++.++..|-... .+.+.|++.|+ |..+++...
T Consensus 2 ~~kVvVA~SGGvDSSvla~~l~----e~---G~~Viavt~d~gq~~~~El~~a~~~A~~lG~~~~~viD~~e 66 (400)
T PRK04527 2 SKDIVLAFSGGLDTSFCIPYLQ----ER---GYAVHTVFADTGGVDAEERDFIEKRAAELGAASHVTVDGGP 66 (400)
T ss_pred CCcEEEEEcCChHHHHHHHHHH----Hc---CCcEEEEEEEeCCCCHHHHHHHHHHHHHcCCCeEEEecCHH
Confidence 35899999998 333 333331 11 35788888885431 34577999998 588887654
No 161
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=30.29 E-value=1.2e+02 Score=21.47 Aligned_cols=30 Identities=13% Similarity=0.103 Sum_probs=19.2
Q ss_pred ceEEEEEecCCCChhhHHHHHcCCCEEEee
Q psy13615 40 AEIVLVVSNKHNVEGLNIARNAGIPTKVST 69 (263)
Q Consensus 40 ~~iv~Visn~~~a~gl~~A~~~gIP~~~v~ 69 (263)
..+..-..++.-..-+++|.+.|+|..++=
T Consensus 29 ~~v~~d~~~~~~~~~~~~a~~~g~~~~iii 58 (91)
T cd00860 29 IRVEVDLRNEKLGKKIREAQLQKIPYILVV 58 (91)
T ss_pred CEEEEECCCCCHHHHHHHHHHcCCCEEEEE
Confidence 344333344444566889999999976653
No 162
>KOG0753|consensus
Probab=30.16 E-value=15 Score=33.99 Aligned_cols=11 Identities=55% Similarity=0.721 Sum_probs=9.7
Q ss_pred eeeeeccCCcc
Q psy13615 2 VVKTRMVQRKR 12 (263)
Q Consensus 2 ~~~~~m~~~~r 12 (263)
||||||||...
T Consensus 248 VVKTRmMNqp~ 258 (317)
T KOG0753|consen 248 VVKTRMMNQPP 258 (317)
T ss_pred HHHhhhccCCC
Confidence 79999999766
No 163
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=29.95 E-value=1.6e+02 Score=24.05 Aligned_cols=54 Identities=20% Similarity=0.262 Sum_probs=33.7
Q ss_pred cEEEEEcCc--chhHHHHHHHhccccCCCCceEEEEEecCCC--------ChhhHHHHHcCCCEEEe
Q psy13615 12 RVAVLISGT--GTNLKSLLEATSNRSDIMRAEIVLVVSNKHN--------VEGLNIARNAGIPTKVS 68 (263)
Q Consensus 12 riavl~SG~--Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~--------a~gl~~A~~~gIP~~~v 68 (263)
||++..||. .+-+-.++... . ...+.++.++..|... ....+.|+++|+|...+
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~--~-~~~~~~v~~v~id~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 64 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSEL--K-PRLGLRLVAVHVDHGLRPESDEEAAFVADLCAKLGIPLYIL 64 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHH--H-HHcCCcEEEEEecCCCCchHHHHHHHHHHHHHHcCCcEEEE
Confidence 689999998 44444444221 1 1113467777777431 14467788999999987
No 164
>PRK14561 hypothetical protein; Provisional
Probab=29.78 E-value=1.4e+02 Score=25.51 Aligned_cols=53 Identities=28% Similarity=0.348 Sum_probs=31.5
Q ss_pred ccEEEEEcCc--chhHHHHHHHhccccCCCCceEEEEEecCC---C-ChhhHHHHHcCCCEEEeeCC
Q psy13615 11 KRVAVLISGT--GTNLKSLLEATSNRSDIMRAEIVLVVSNKH---N-VEGLNIARNAGIPTKVSTYK 71 (263)
Q Consensus 11 ~riavl~SG~--Gsnl~al~~~~~~~~~~l~~~iv~Visn~~---~-a~gl~~A~~~gIP~~~v~~~ 71 (263)
+|++++.||. .|-+..++. +. .++.++-.|-. + ..+...|+++|+|...++..
T Consensus 1 mkV~ValSGG~DSslll~~l~----~~----~~v~a~t~~~g~~~e~~~a~~~a~~lGi~~~~v~~~ 59 (194)
T PRK14561 1 MKAGVLFSGGKDSSLAAILLE----RF----YDVELVTVNFGVLDSWKHAREAAKALGFPHRVLELD 59 (194)
T ss_pred CEEEEEEechHHHHHHHHHHH----hc----CCeEEEEEecCchhHHHHHHHHHHHhCCCEEEEECC
Confidence 4799999998 333333331 11 23333333322 2 24567889999999988653
No 165
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=29.75 E-value=53 Score=28.78 Aligned_cols=42 Identities=24% Similarity=0.402 Sum_probs=28.2
Q ss_pred eeeccCCccEEEEEcCcchhHH--HHHHHhccccCCCCceEEEEEecC
Q psy13615 4 KTRMVQRKRVAVLISGTGTNLK--SLLEATSNRSDIMRAEIVLVVSNK 49 (263)
Q Consensus 4 ~~~m~~~~riavl~SG~Gsnl~--al~~~~~~~~~~l~~~iv~Visn~ 49 (263)
.|+|+.+-.+.+++||+|..-+ +++.+ .| +.++.+++|-+|.
T Consensus 80 dlg~i~~~DvviaiS~SGeT~el~~~~~~--aK--~~g~~liaiT~~~ 123 (202)
T COG0794 80 DLGMITPGDVVIAISGSGETKELLNLAPK--AK--RLGAKLIAITSNP 123 (202)
T ss_pred CccCCCCCCEEEEEeCCCcHHHHHHHHHH--HH--HcCCcEEEEeCCC
Confidence 4788988889999999985433 33332 22 3467788877764
No 166
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp
Probab=29.15 E-value=1.2e+02 Score=27.61 Aligned_cols=26 Identities=15% Similarity=-0.069 Sum_probs=19.9
Q ss_pred CCeEEEEeeccccccCCceeeecCcceeeeeCCC
Q psy13615 226 TPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPE 259 (263)
Q Consensus 226 ~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~ 259 (263)
+|+.+.+.-.+..+..+ +.++|.|.+
T Consensus 232 ~p~~~~iGWDvait~~G--------p~llE~N~~ 257 (285)
T PF14397_consen 232 FPGLGYIGWDVAITEDG--------PVLLEGNAR 257 (285)
T ss_pred CCCCCeEEEEEEEcCCC--------cEEEEeeCC
Confidence 77778888888855555 457899999
No 167
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=29.04 E-value=95 Score=23.21 Aligned_cols=33 Identities=24% Similarity=0.354 Sum_probs=24.9
Q ss_pred CceEEEEEecCCC----ChhhHHHHHcCCCEEEeeCC
Q psy13615 39 RAEIVLVVSNKHN----VEGLNIARNAGIPTKVSTYK 71 (263)
Q Consensus 39 ~~~iv~Visn~~~----a~gl~~A~~~gIP~~~v~~~ 71 (263)
.+|+|.+++|--. -.+-+.|+++|+|+.+....
T Consensus 48 ~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~ 84 (97)
T PF10087_consen 48 KADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSR 84 (97)
T ss_pred CCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECCC
Confidence 3689999998432 25678899999999998543
No 168
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=28.96 E-value=2e+02 Score=25.87 Aligned_cols=44 Identities=16% Similarity=0.175 Sum_probs=23.2
Q ss_pred CccEEEEEcCcchhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHH
Q psy13615 10 RKRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIAR 59 (263)
Q Consensus 10 ~~riavl~SG~Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~ 59 (263)
|+||.|+..|++. .++++.+ +.+. +.+++++-+| +.+++...|.
T Consensus 1 ~~~vLv~g~~~~~---~~~~~l~-~~~~-g~~vi~~d~~-~~~~~~~~~d 44 (326)
T PRK12767 1 MMNILVTSAGRRV---QLVKALK-KSLL-KGRVIGADIS-ELAPALYFAD 44 (326)
T ss_pred CceEEEecCCccH---HHHHHHH-Hhcc-CCEEEEECCC-CcchhhHhcc
Confidence 3477777777664 3443322 2121 3566554444 6778776543
No 169
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=28.24 E-value=97 Score=23.48 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=13.1
Q ss_pred hhhHHHHHcCCCEEEeeCCCCCC
Q psy13615 53 EGLNIARNAGIPTKVSTYKHTLI 75 (263)
Q Consensus 53 ~gl~~A~~~gIP~~~v~~~~~~~ 75 (263)
..+++.++.|+|+.+++.....+
T Consensus 21 e~l~~L~~~g~~~~~lTNns~~s 43 (101)
T PF13344_consen 21 EALDALRERGKPVVFLTNNSSRS 43 (101)
T ss_dssp HHHHHHHHTTSEEEEEES-SSS-
T ss_pred HHHHHHHHcCCCEEEEeCCCCCC
Confidence 44666667777777776654333
No 170
>CHL00051 rps12 ribosomal protein S12
Probab=28.17 E-value=40 Score=27.18 Aligned_cols=24 Identities=29% Similarity=0.553 Sum_probs=21.6
Q ss_pred eeeeeccCCccEEEEEcCcchhHH
Q psy13615 2 VVKTRMVQRKRVAVLISGTGTNLK 25 (263)
Q Consensus 2 ~~~~~m~~~~riavl~SG~Gsnl~ 25 (263)
++++|..+.++|..++-|.|+|+|
T Consensus 52 varVrLsngk~v~AyIPGeGhnlq 75 (123)
T CHL00051 52 VARVRLTSGFEITAYIPGIGHNLQ 75 (123)
T ss_pred EEEEEccCCCEEEEEcCCCCcccc
Confidence 578999999999999999999877
No 171
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=27.40 E-value=1.9e+02 Score=26.11 Aligned_cols=50 Identities=22% Similarity=0.174 Sum_probs=29.6
Q ss_pred CCccEEEEEcCc-ch-hHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCC
Q psy13615 9 QRKRVAVLISGT-GT-NLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIP 64 (263)
Q Consensus 9 ~~~riavl~SG~-Gs-nl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP 64 (263)
.++|++++..|. +. .....+. +.+.. .++++++.-+ ...+.+.|+++|++
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~----~~~~~-~~~vav~d~~-~~~a~~~a~~~~~~ 53 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALA----ALGGG-LELVAVVDRD-PERAEAFAEEFGIA 53 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHH----hCCCc-eEEEEEecCC-HHHHHHHHHHcCCC
Confidence 467999999884 22 1222221 11211 4666666544 44567889999999
No 172
>PRK06849 hypothetical protein; Provisional
Probab=27.21 E-value=2.1e+02 Score=26.78 Aligned_cols=38 Identities=18% Similarity=0.091 Sum_probs=19.8
Q ss_pred ccCCccEEEEEcCcchhHHHHHHHhccccCCCCceEEEEEecC
Q psy13615 7 MVQRKRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNK 49 (263)
Q Consensus 7 m~~~~riavl~SG~Gsnl~al~~~~~~~~~~l~~~iv~Visn~ 49 (263)
|.+++||.|+.++.+ +-..++.+.. + .+.+|+++-++.
T Consensus 1 ~~~~~~VLI~G~~~~-~~l~iar~l~-~---~G~~Vi~~d~~~ 38 (389)
T PRK06849 1 MNTKKTVLITGARAP-AALELARLFH-N---AGHTVILADSLK 38 (389)
T ss_pred CCCCCEEEEeCCCcH-HHHHHHHHHH-H---CCCEEEEEeCCc
Confidence 556777666654443 2333443321 2 256887776653
No 173
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=26.83 E-value=1.6e+02 Score=23.81 Aligned_cols=43 Identities=12% Similarity=0.098 Sum_probs=29.6
Q ss_pred EEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCHHHHHHHHHHh
Q psy13615 42 IVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLILSNSLQVMQKV 86 (263)
Q Consensus 42 iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~~~~~~i~~~l 86 (263)
-++++||++.......++++|++.++-..+ .+.+...++++.+
T Consensus 46 ~i~IvTn~~~~~~~~~l~~~gi~~~~~~~~--~k~~~~~~~~~~~ 88 (154)
T TIGR01670 46 EVAIITGRKAKLVEDRCKTLGITHLYQGQS--NKLIAFSDILEKL 88 (154)
T ss_pred EEEEEECCCCHHHHHHHHHcCCCEEEeccc--chHHHHHHHHHHc
Confidence 467899998888888899999996654321 2335555555555
No 174
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=26.30 E-value=3.6e+02 Score=25.92 Aligned_cols=32 Identities=9% Similarity=0.003 Sum_probs=22.1
Q ss_pred ceEEEEEecCCCChhhHHHHHcCCCEEEeeCCC
Q psy13615 40 AEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKH 72 (263)
Q Consensus 40 ~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~ 72 (263)
+.+.+=+.|.-|.. .+.|+.+|+++..-.+..
T Consensus 291 ~~v~~g~l~~~d~d-~~~a~~l~~~~~~~~pf~ 322 (402)
T PRK09536 291 ASVSVGPVPEGDTA-AETAARVGCEAVTVPPFK 322 (402)
T ss_pred CeEEEecCcCcchh-HHHHHHcCCCEEeeCCCC
Confidence 56666666655554 457999999988776543
No 175
>PRK13978 ribose-5-phosphate isomerase A; Provisional
Probab=26.20 E-value=1.1e+02 Score=27.28 Aligned_cols=51 Identities=22% Similarity=0.207 Sum_probs=31.1
Q ss_pred EEEcCcchhHHHHHHHhcc--ccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeC
Q psy13615 15 VLISGTGTNLKSLLEATSN--RSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTY 70 (263)
Q Consensus 15 vl~SG~Gsnl~al~~~~~~--~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~ 70 (263)
++.-|+||....++++... +.+.+ ++.+|-|.. .-...|+++|||..-++.
T Consensus 24 vvGLGTGSTv~~~i~~L~~~~~~~~l--~i~~VptS~---~t~~~a~~~Gipl~~l~~ 76 (228)
T PRK13978 24 TLGIGTGSTMELLLPQMAQLIKERGY--NITGVCTSN---KIAFLAKELGIKICEIND 76 (228)
T ss_pred EEEeCchHHHHHHHHHHHHHhhccCc--cEEEEeCcH---HHHHHHHHcCCcEechhh
Confidence 4666778877766654321 22223 566664433 335679999999777654
No 176
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.19 E-value=1.8e+02 Score=23.64 Aligned_cols=45 Identities=9% Similarity=0.002 Sum_probs=30.1
Q ss_pred EEEEEecCCCC---------hhhHHHHHcCCCEEEeeCCCCC-CHHHHHHHHHHh
Q psy13615 42 IVLVVSNKHNV---------EGLNIARNAGIPTKVSTYKHTL-ILSNSLQVMQKV 86 (263)
Q Consensus 42 iv~Visn~~~a---------~gl~~A~~~gIP~~~v~~~~~~-~~~~~~~i~~~l 86 (263)
...||+|+||- ...++|++.|+++.+++-.... ..+..+.+.+.+
T Consensus 29 FksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~y~~iPV~~~~iT~~dV~~f~~Al 83 (130)
T COG3453 29 FKSIICNRPDGEEPGQPGFAAIAAAAEAAGLTYTHIPVTGGGITEADVEAFQRAL 83 (130)
T ss_pred cceecccCCCCCCCCCCChHHHHHHHHhcCCceEEeecCCCCCCHHHHHHHHHHH
Confidence 35579999986 4467899999999999866532 223344444444
No 177
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=26.18 E-value=1.7e+02 Score=22.64 Aligned_cols=22 Identities=9% Similarity=-0.058 Sum_probs=17.6
Q ss_pred hhHHHHHcCCCEEEeeCCCCCC
Q psy13615 54 GLNIARNAGIPTKVSTYKHTLI 75 (263)
Q Consensus 54 gl~~A~~~gIP~~~v~~~~~~~ 75 (263)
.-+.+.++|+|+.+++...|+.
T Consensus 67 i~~~~~~~~ipv~~I~~~~Y~~ 88 (104)
T PRK09590 67 FEEAGAKVGKPVVQIPPQAYIP 88 (104)
T ss_pred HHHHhhhcCCCEEEeCHHHcCC
Confidence 4456778899999999888874
No 178
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=26.17 E-value=2.9e+02 Score=20.84 Aligned_cols=33 Identities=24% Similarity=0.409 Sum_probs=25.7
Q ss_pred ceEEEEEecCCCC----hhhHHHHHcCCCEEEeeCCC
Q psy13615 40 AEIVLVVSNKHNV----EGLNIARNAGIPTKVSTYKH 72 (263)
Q Consensus 40 ~~iv~Visn~~~a----~gl~~A~~~gIP~~~v~~~~ 72 (263)
.+++.++|..... ..++.|++.|.|+..+....
T Consensus 54 ~d~vi~is~sg~~~~~~~~~~~ak~~g~~vi~iT~~~ 90 (131)
T PF01380_consen 54 DDLVIIISYSGETRELIELLRFAKERGAPVILITSNS 90 (131)
T ss_dssp TEEEEEEESSSTTHHHHHHHHHHHHTTSEEEEEESST
T ss_pred cceeEeeeccccchhhhhhhHHHHhcCCeEEEEeCCC
Confidence 5888899976544 56889999999998887554
No 179
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=26.16 E-value=2.3e+02 Score=23.99 Aligned_cols=30 Identities=27% Similarity=0.349 Sum_probs=20.4
Q ss_pred eEEEEEecCC-------CChhhHHHHHcCCCEEEeeC
Q psy13615 41 EIVLVVSNKH-------NVEGLNIARNAGIPTKVSTY 70 (263)
Q Consensus 41 ~iv~Visn~~-------~a~gl~~A~~~gIP~~~v~~ 70 (263)
+=++++||+. ...+-..++.+|||++....
T Consensus 78 ~~v~IvSNsaGs~~d~~~~~a~~~~~~lgIpvl~h~~ 114 (168)
T PF09419_consen 78 DRVLIVSNSAGSSDDPDGERAEALEKALGIPVLRHRA 114 (168)
T ss_pred CeEEEEECCCCcccCccHHHHHHHHHhhCCcEEEeCC
Confidence 3477899974 22345567889999876653
No 180
>PRK05163 rpsL 30S ribosomal protein S12; Validated
Probab=26.15 E-value=47 Score=26.81 Aligned_cols=24 Identities=33% Similarity=0.571 Sum_probs=21.7
Q ss_pred eeeeeccCCccEEEEEcCcchhHH
Q psy13615 2 VVKTRMVQRKRVAVLISGTGTNLK 25 (263)
Q Consensus 2 ~~~~~m~~~~riavl~SG~Gsnl~ 25 (263)
++++|..+.++|..++-|.|+|+|
T Consensus 52 varVrL~ngk~v~AyIPGeGhnlq 75 (124)
T PRK05163 52 VARVRLTNGFEVTAYIPGEGHNLQ 75 (124)
T ss_pred EEEEEeCCCCEEEEEcCCCCCCcc
Confidence 578999999999999999999887
No 181
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=26.08 E-value=2.9e+02 Score=22.58 Aligned_cols=34 Identities=12% Similarity=0.056 Sum_probs=19.3
Q ss_pred CCceEEEEEecCCCChhhHHHHHcCCC-EEEeeCC
Q psy13615 38 MRAEIVLVVSNKHNVEGLNIARNAGIP-TKVSTYK 71 (263)
Q Consensus 38 l~~~iv~Visn~~~a~gl~~A~~~gIP-~~~v~~~ 71 (263)
+..++.+++.........+.+..+|.. +++++..
T Consensus 27 l~~~v~~v~~G~~~~~~~~~~~~~Gad~v~~~~~~ 61 (168)
T cd01715 27 LGGEVTALVIGSGAEAVAAALKAYGADKVLVAEDP 61 (168)
T ss_pred hCCCEEEEEECCChHHHHHHHHhcCCCEEEEecCh
Confidence 334566666654444446667788885 4445543
No 182
>PRK03379 vitamin B12-transporter protein BtuF; Provisional
Probab=25.93 E-value=1.1e+02 Score=26.98 Aligned_cols=50 Identities=14% Similarity=0.194 Sum_probs=31.3
Q ss_pred EEEcCcchhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCC
Q psy13615 15 VLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKH 72 (263)
Q Consensus 15 vl~SG~Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~ 72 (263)
.+.+....|++.|+.. +.|++...........++.-++.|||+.+++...
T Consensus 56 ~vg~~~~~n~E~il~l--------~PDlVi~~~~~~~~~~~~~L~~~gi~v~~~~~~~ 105 (260)
T PRK03379 56 QVATWQGMNLERIVAL--------KPDLVLAWRGGNAERQVDQLASLGIKVMWVDATS 105 (260)
T ss_pred ccCCCCCCCHHHHHhc--------CCCEEEEecCCCcHHHHHHHHHCCCCEEEeCCCC
Confidence 3444456789988722 3577654432112345677889999999997543
No 183
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=25.82 E-value=1.1e+02 Score=24.37 Aligned_cols=30 Identities=23% Similarity=0.389 Sum_probs=21.2
Q ss_pred CceEEEEEecCCCC----hhhHHHHHcCCCEEEe
Q psy13615 39 RAEIVLVVSNKHNV----EGLNIARNAGIPTKVS 68 (263)
Q Consensus 39 ~~~iv~Visn~~~a----~gl~~A~~~gIP~~~v 68 (263)
+.|+..++|+.-.. .++++|++.|+++..+
T Consensus 103 ~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vIal 136 (138)
T PF13580_consen 103 PGDVLIVISNSGNSPNVIEAAEEAKERGMKVIAL 136 (138)
T ss_dssp TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEE
Confidence 56999999985544 5688899999888765
No 184
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=25.62 E-value=1.4e+02 Score=24.91 Aligned_cols=42 Identities=12% Similarity=0.089 Sum_probs=26.6
Q ss_pred EEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCHHHHHHHHHHh
Q psy13615 43 VLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLILSNSLQVMQKV 86 (263)
Q Consensus 43 v~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~~~~~~i~~~l 86 (263)
++++||++.......++++|++.++.... .+.+....+++.+
T Consensus 67 v~I~T~~~~~~v~~~l~~lgl~~~f~g~~--~k~~~l~~~~~~~ 108 (183)
T PRK09484 67 VAIITGRKSKLVEDRMTTLGITHLYQGQS--NKLIAFSDLLEKL 108 (183)
T ss_pred EEEEeCCCcHHHHHHHHHcCCceeecCCC--cHHHHHHHHHHHh
Confidence 45888888877788889999886553211 1224555555555
No 185
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=25.45 E-value=1.2e+02 Score=24.65 Aligned_cols=56 Identities=13% Similarity=0.151 Sum_probs=35.2
Q ss_pred CccEEEEEcCc---chhHHHHHHHhccccCCCCceEEE---EEecCCCChhhHHHHHcCCCEEE
Q psy13615 10 RKRVAVLISGT---GTNLKSLLEATSNRSDIMRAEIVL---VVSNKHNVEGLNIARNAGIPTKV 67 (263)
Q Consensus 10 ~~riavl~SG~---Gsnl~al~~~~~~~~~~l~~~iv~---Visn~~~a~gl~~A~~~gIP~~~ 67 (263)
++||.|+..|+ ..-.++++.+.. . ..+.++=+. ...+.++..+++.++++||+..-
T Consensus 2 ~~kVLFVC~gN~cRSpmAE~l~~~~~-~-~~~~v~SAGt~~~~g~~~~~~a~~vl~e~Gid~~~ 63 (139)
T COG0394 2 MMKVLFVCTGNICRSPMAEALLRHLA-P-DNVEVDSAGTGGHPGEPPDPRAVEVLAEHGIDISG 63 (139)
T ss_pred CceEEEEcCCCcccCHHHHHHHHHhc-c-CCeEEECCccCCCCCCCCCHHHHHHHHHcCCCcCC
Confidence 46899999998 444556654321 1 222233333 24456677889999999999664
No 186
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]
Probab=25.40 E-value=1.7e+02 Score=28.40 Aligned_cols=43 Identities=26% Similarity=0.363 Sum_probs=29.6
Q ss_pred hhHHHHHHHhccccCCCCceEEEEEecCCCC----------hhhHHHHHcCCCEEE
Q psy13615 22 TNLKSLLEATSNRSDIMRAEIVLVVSNKHNV----------EGLNIARNAGIPTKV 67 (263)
Q Consensus 22 snl~al~~~~~~~~~~l~~~iv~Visn~~~a----------~gl~~A~~~gIP~~~ 67 (263)
-+||.+++. ...+.++ =|++.|+|+..+ ...+.|++++||+..
T Consensus 172 ~kLe~lide--vG~~nvp-~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv~ 224 (471)
T COG3033 172 EKLERLIDE--VGADNVP-YIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVVM 224 (471)
T ss_pred HHHHHHHHH--hCcccCc-EEEEEEeccccCCCcchHHhHHHHHHHHHHcCCcEEe
Confidence 456777754 2233454 588899998665 457899999999654
No 187
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=25.36 E-value=4.9e+02 Score=23.19 Aligned_cols=55 Identities=22% Similarity=0.175 Sum_probs=32.0
Q ss_pred cEEEEEcCc-chhHHHHHHHhccccCCCCceEEEEEec---CCCC---------hhhHHHHHcCCCEEEeeCCC
Q psy13615 12 RVAVLISGT-GTNLKSLLEATSNRSDIMRAEIVLVVSN---KHNV---------EGLNIARNAGIPTKVSTYKH 72 (263)
Q Consensus 12 riavl~SG~-Gsnl~al~~~~~~~~~~l~~~iv~Visn---~~~a---------~gl~~A~~~gIP~~~v~~~~ 72 (263)
|.+.|.||. -|++. +..+ .+. +.+|..+++= +++. .+-..|+..|||.....-..
T Consensus 2 k~~aL~SGGKDS~~A-l~~a--~~~---G~eV~~Ll~~~p~~~dS~m~H~~n~~~~~~~Ae~~gi~l~~~~~~g 69 (223)
T COG2102 2 KVIALYSGGKDSFYA-LYLA--LEE---GHEVVYLLTVKPENGDSYMFHTPNLELAELQAEAMGIPLVTFDTSG 69 (223)
T ss_pred cEEEEEecCcHHHHH-HHHH--HHc---CCeeEEEEEEecCCCCeeeeeccchHHHHHHHHhcCCceEEEecCc
Confidence 677788887 56554 4422 232 3555554443 3322 23446899999988876544
No 188
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=25.35 E-value=5.2e+02 Score=24.69 Aligned_cols=72 Identities=17% Similarity=0.215 Sum_probs=41.5
Q ss_pred ccEEEEEcCcchhHHHHHHHhccccCCCCceEEEEEecCCCC--------------hhhHHHHHcCCCEEEeeCCCCCCH
Q psy13615 11 KRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNV--------------EGLNIARNAGIPTKVSTYKHTLIL 76 (263)
Q Consensus 11 ~riavl~SG~Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a--------------~gl~~A~~~gIP~~~v~~~~~~~~ 76 (263)
+|+.+++ .|.+.+.++++.. ++...+.++++++.++++. ...+.++++++...++.... .+.
T Consensus 126 ~rvLIvG--ag~~a~~l~~~L~-~~~~~g~~vvG~idd~~~~~~~i~g~pVlg~~~~l~~~i~~~~id~ViIa~p~-~~~ 201 (445)
T TIGR03025 126 RRVLIVG--TGEAARELAAALS-RNPDLGYRVVGFVDDRPSDRVEVAGLPVLGKLDDLVELVRAHRVDEVIIALPL-SEE 201 (445)
T ss_pred CcEEEEE--CCHHHHHHHHHHh-hCccCCeEEEEEEeCCcccccccCCCcccCCHHHHHHHHHhCCCCEEEEecCc-ccH
Confidence 4555554 4555666664432 2234567999998875432 12456778888887776433 233
Q ss_pred HHHHHHHHHh
Q psy13615 77 SNSLQVMQKV 86 (263)
Q Consensus 77 ~~~~~i~~~l 86 (263)
+...++++.+
T Consensus 202 ~~~~~ll~~~ 211 (445)
T TIGR03025 202 ARILELLLQL 211 (445)
T ss_pred HHHHHHHHHH
Confidence 4455566644
No 189
>COG0603 Predicted PP-loop superfamily ATPase [General function prediction only]
Probab=24.85 E-value=1.9e+02 Score=25.73 Aligned_cols=53 Identities=21% Similarity=0.378 Sum_probs=34.0
Q ss_pred CccEEEEEcCc--chhHHHHHHHhccccCCCCceEEEEEec---CCCC---hhhHHHHHcCCCEEEee
Q psy13615 10 RKRVAVLISGT--GTNLKSLLEATSNRSDIMRAEIVLVVSN---KHNV---EGLNIARNAGIPTKVST 69 (263)
Q Consensus 10 ~~riavl~SG~--Gsnl~al~~~~~~~~~~l~~~iv~Visn---~~~a---~gl~~A~~~gIP~~~v~ 69 (263)
++|-+|+.||. .|.+.+.+. +. ..+|.++--| +... .+-+.|+++|||..+++
T Consensus 2 ~~kavvl~SGG~DStt~l~~a~----~~---~~ev~alsfdYGQrh~~Ele~A~~iak~lgv~~~iid 62 (222)
T COG0603 2 MKKAVVLLSGGLDSTTCLAWAK----KE---GYEVHALTFDYGQRHRKELEAAKELAKKLGVPHHIID 62 (222)
T ss_pred CceEEEEccCChhHHHHHHHHH----hc---CCEEEEEEeeCCCCcHHHHHHHHHHHHHcCCCeEEec
Confidence 45788899997 444443331 21 2577777777 2211 44567889999999885
No 190
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=24.64 E-value=2.5e+02 Score=25.86 Aligned_cols=54 Identities=15% Similarity=0.081 Sum_probs=35.8
Q ss_pred cEEEEEcCc--chhHHHHHHHhccccCCCCceEEEEEecCCCC------hhhHHHHHcCC-CEEEeeCC
Q psy13615 12 RVAVLISGT--GTNLKSLLEATSNRSDIMRAEIVLVVSNKHNV------EGLNIARNAGI-PTKVSTYK 71 (263)
Q Consensus 12 riavl~SG~--Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a------~gl~~A~~~gI-P~~~v~~~ 71 (263)
|+++..||. .|-+..++. + .++.++.+|..|+... .+.+.|+++|+ |..+++..
T Consensus 1 kVlVa~SGGVDSsvla~ll~----~--~lG~~v~aV~vd~g~~~~~E~~~~~~~~~~~g~i~~~vvd~~ 63 (295)
T cd01997 1 KVILALSGGVDSTVAAVLLH----K--AIGDRLTCVFVDNGLLRKNEAERVEELFSKLLGINLIVVDAS 63 (295)
T ss_pred CEEEEEcCChHHHHHHHHHH----H--HhCCcEEEEEecCCCCChHHHHHHHHHHHHhCCCcEEEEcCc
Confidence 578899998 444444442 1 1234788888886542 45667888886 99998764
No 191
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=24.57 E-value=1.3e+02 Score=27.44 Aligned_cols=59 Identities=25% Similarity=0.403 Sum_probs=38.6
Q ss_pred ccCCccEEEEEcCc-chhHHHHHHHhccccCCCCceEEEEEecCCCC------hhhHHHHHcCCCEEEeeC
Q psy13615 7 MVQRKRVAVLISGT-GTNLKSLLEATSNRSDIMRAEIVLVVSNKHNV------EGLNIARNAGIPTKVSTY 70 (263)
Q Consensus 7 m~~~~riavl~SG~-Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a------~gl~~A~~~gIP~~~v~~ 70 (263)
|-...|++|-.||. -|.+.+.+.+ ..++-++++|-.+.|-. .+...|++.||...+++.
T Consensus 14 ik~~~kv~vAfSGGvDSslLa~la~-----~~lG~~v~AvTv~sP~~p~~e~e~A~~~A~~iGi~H~~i~~ 79 (269)
T COG1606 14 IKEKKKVVVAFSGGVDSSLLAKLAK-----EALGDNVVAVTVDSPYIPRREIEEAKNIAKEIGIRHEFIKM 79 (269)
T ss_pred HhhcCeEEEEecCCccHHHHHHHHH-----HHhccceEEEEEecCCCChhhhhHHHHHHHHhCCcceeeeh
Confidence 34456999999998 4555555422 12334677776665543 456789999999888763
No 192
>PRK11106 queuosine biosynthesis protein QueC; Provisional
Probab=24.55 E-value=2.5e+02 Score=24.93 Aligned_cols=54 Identities=22% Similarity=0.143 Sum_probs=33.3
Q ss_pred ccEEEEEcCc--chhHHHHHHHhccccCCCCceEEEEEecCCC------ChhhHHHHHcCCC-EEEeeCC
Q psy13615 11 KRVAVLISGT--GTNLKSLLEATSNRSDIMRAEIVLVVSNKHN------VEGLNIARNAGIP-TKVSTYK 71 (263)
Q Consensus 11 ~riavl~SG~--Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~------a~gl~~A~~~gIP-~~~v~~~ 71 (263)
.|++|+.||. .|-+..++ . +.+ .++.++..|-.. -.+...|+++|+| ..+++..
T Consensus 2 ~kvvVl~SGG~DSt~~l~~a-~---~~~---~~v~alt~dygq~~~~El~~a~~ia~~~gi~~h~vid~~ 64 (231)
T PRK11106 2 KRAVVVFSGGQDSTTCLIQA-L---QQY---DEVHCVTFDYGQRHRAEIDVARELALKLGARAHKVLDVT 64 (231)
T ss_pred CcEEEEeeCcHHHHHHHHHH-H---hcC---CeEEEEEEEeCCCCHHHHHHHHHHHHHcCCCeEEEEecc
Confidence 4799999998 33333333 1 111 367777777433 1345678899997 7777644
No 193
>TIGR00981 rpsL_bact ribosomal protein S12, bacterial/organelle. This model recognizes ribosomal protein S12 of Bacteria, mitochondria, and chloroplasts. The homologous ribosomal proteins of Archaea and Eukarya, termed S23 in Eukarya and S12 or S23 in Archaea, score below the trusted cutoff.
Probab=24.26 E-value=50 Score=26.64 Aligned_cols=24 Identities=33% Similarity=0.571 Sum_probs=21.6
Q ss_pred eeeeeccCCccEEEEEcCcchhHH
Q psy13615 2 VVKTRMVQRKRVAVLISGTGTNLK 25 (263)
Q Consensus 2 ~~~~~m~~~~riavl~SG~Gsnl~ 25 (263)
++++|..+.++|..++-|.|+|+|
T Consensus 52 varVrL~ngk~v~AyIPG~Ghnlq 75 (124)
T TIGR00981 52 VARVRLTNGFEVTAYIPGEGHNLQ 75 (124)
T ss_pred eEEEEeCCCCEEEEEcCCCCCCcc
Confidence 578899999999999999998887
No 194
>COG0120 RpiA Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=24.16 E-value=1.4e+02 Score=26.69 Aligned_cols=53 Identities=25% Similarity=0.241 Sum_probs=36.1
Q ss_pred EEEcCcchhHHHHHHHhcc-ccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCC
Q psy13615 15 VLISGTGTNLKSLLEATSN-RSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKH 72 (263)
Q Consensus 15 vl~SG~Gsnl~al~~~~~~-~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~ 72 (263)
++.-|+||.....+++... ..++ .++.+|-|.. .-...|+++|||+..++..+
T Consensus 23 viGlGTGST~~~fI~~Lg~~~~~e--~~i~~V~TS~---~t~~l~~~~GI~v~~l~~~~ 76 (227)
T COG0120 23 VIGLGTGSTAAYFIEALGRRVKGE--LDIGGVPTSF---QTEELARELGIPVSSLNEVD 76 (227)
T ss_pred EEEEcCcHHHHHHHHHHHHhhccC--ccEEEEeCCH---HHHHHHHHcCCeecCccccC
Confidence 5677899999988876431 1111 3677777755 33456999999988876554
No 195
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=23.96 E-value=1.1e+02 Score=32.05 Aligned_cols=48 Identities=17% Similarity=0.180 Sum_probs=31.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCC
Q psy13615 201 LTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEG 261 (263)
Q Consensus 201 ~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~g 261 (263)
+++++.++++ ++-..+.+.| | ++|..=+.++.+..+- +-++|+|.++|
T Consensus 710 l~~~~~~~i~-~~a~~~~~aL---g--~~G~~riDf~v~~~g~-------~yv~EiNt~PG 757 (809)
T PRK14573 710 LSKESQEQVL-ELAERIYRLL---Q--GKGSCRIDFFLDEEGN-------FWLSEMNPIPG 757 (809)
T ss_pred CCHHHHHHHH-HHHHHHHHHh---C--CceEEEEEEEEcCCCC-------EEEEEeeCCCC
Confidence 4666666664 4444444444 3 7788888888654332 45899999998
No 196
>TIGR00032 argG argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria.
Probab=23.94 E-value=2.4e+02 Score=27.18 Aligned_cols=53 Identities=13% Similarity=0.054 Sum_probs=36.0
Q ss_pred cEEEEEcCc--chhHHHHHHHhccccCCCCceEEEEEecCCCC-----hhhHHHHHcCC-CEEEeeCC
Q psy13615 12 RVAVLISGT--GTNLKSLLEATSNRSDIMRAEIVLVVSNKHNV-----EGLNIARNAGI-PTKVSTYK 71 (263)
Q Consensus 12 riavl~SG~--Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a-----~gl~~A~~~gI-P~~~v~~~ 71 (263)
|+++..||. .|.+..++. +. +.++.++..|.... .+.+.|+++|+ +..+++.+
T Consensus 1 kVvla~SGGlDSsvll~~l~----e~---g~~V~av~id~Gq~~~e~~~a~~~a~~lGi~~~~viD~~ 61 (394)
T TIGR00032 1 KVVLAYSGGLDTSVCLKWLR----EK---GYEVIAYTADVGQPEEDIDAIPEKALEYGAENHYTIDAR 61 (394)
T ss_pred CEEEEEcCCHHHHHHHHHHH----Hc---CCEEEEEEEecCCChHHHHHHHHHHHHhCCCeEEEEeCH
Confidence 688999998 444444441 11 46888888885431 34678999998 78888764
No 197
>PF00164 Ribosom_S12_S23: Ribosomal protein S12/S23; InterPro: IPR006032 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S12 is one of the proteins from the small ribosomal subunit. In Escherichia coli, S12 is known to be involved in the translation initiation step. It is a very basic protein of 120 to 150 amino-acid residues. S12 belongs to a family of ribosomal proteins which are grouped on the basis of sequence similarities. This protein is known typically as S12 in bacteria, S23 in eukaryotes and as either S12 or S23 in the Archaea []. Bacterial S12 molecules contain a conserved aspartic acid residue which undergoes a novel post-translational modification, beta-methylthiolation, to form the corresponding 3-methylthioaspartic acid.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2ZKQ_l 3BBN_L 3PYU_L 3D5A_L 3MS0_L 3MR8_L 3F1G_L 2OW8_m 3PYS_L 2QNH_m ....
Probab=23.88 E-value=34 Score=27.55 Aligned_cols=24 Identities=38% Similarity=0.679 Sum_probs=20.7
Q ss_pred eeeeeccCCccEEEEEcCcchhHH
Q psy13615 2 VVKTRMVQRKRVAVLISGTGTNLK 25 (263)
Q Consensus 2 ~~~~~m~~~~riavl~SG~Gsnl~ 25 (263)
++++|.++.+++..++-|.|+|+|
T Consensus 51 ~arVrL~n~k~v~AyIPg~Ghnlq 74 (122)
T PF00164_consen 51 VARVRLSNGKKVTAYIPGEGHNLQ 74 (122)
T ss_dssp EEEEEETTSEEEEEEC-SSSCCST
T ss_pred cceeeeccCceEEEEecCCccccc
Confidence 578999999999999999998887
No 198
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=23.78 E-value=1e+02 Score=28.60 Aligned_cols=32 Identities=13% Similarity=0.125 Sum_probs=25.0
Q ss_pred ceEEEEEecCCC--ChhhHHHHHcCCCEEEeeCC
Q psy13615 40 AEIVLVVSNKHN--VEGLNIARNAGIPTKVSTYK 71 (263)
Q Consensus 40 ~~iv~Visn~~~--a~gl~~A~~~gIP~~~v~~~ 71 (263)
.+-.++..++++ .+.+++|++.|||+..++..
T Consensus 81 vdgIiv~~~d~~al~~~l~~a~~~gIpVV~~d~~ 114 (336)
T PRK15408 81 YNAIIVSAVSPDGLCPALKRAMQRGVKVLTWDSD 114 (336)
T ss_pred CCEEEEecCCHHHHHHHHHHHHHCCCeEEEeCCC
Confidence 455566666666 58899999999999999764
No 199
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=23.74 E-value=1e+02 Score=27.03 Aligned_cols=58 Identities=14% Similarity=0.055 Sum_probs=39.5
Q ss_pred ccEEEEEcCc-chhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCC
Q psy13615 11 KRVAVLISGT-GTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYK 71 (263)
Q Consensus 11 ~riavl~SG~-Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~ 71 (263)
-|+++|+--. ..|-. ++... ....-+.||-+|-|...|...-++|.+++||...+...
T Consensus 110 ~rlalFvkd~C~~C~~-~~~~l--~a~~~~~Diylvgs~~dD~~Ir~WA~~~~Idp~~V~~~ 168 (200)
T TIGR03759 110 GRLALFVKDDCVACDA-RVQRL--LADNAPLDLYLVGSQGDDERIRQWANRHQIDPAKVRSR 168 (200)
T ss_pred CeEEEEeCCCChHHHH-HHHHH--hcCCCceeEEEecCCCCHHHHHHHHHHcCCCHHHeecC
Confidence 3789999744 22222 22211 11233689999998887888899999999998777543
No 200
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=23.42 E-value=1e+02 Score=23.21 Aligned_cols=47 Identities=28% Similarity=0.339 Sum_probs=28.1
Q ss_pred cEEEEEcCc-chhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCC
Q psy13615 12 RVAVLISGT-GTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIP 64 (263)
Q Consensus 12 riavl~SG~-Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP 64 (263)
|+++++.|+ |+.....+.. ... ..++++++..++ ...-+.++++|+|
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~---~~~--~~~v~~v~d~~~-~~~~~~~~~~~~~ 49 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLR---SSP--DFEVVAVCDPDP-ERAEAFAEKYGIP 49 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHH---TTT--TEEEEEEECSSH-HHHHHHHHHTTSE
T ss_pred EEEEECCcHHHHHHHHHHHh---cCC--CcEEEEEEeCCH-HHHHHHHHHhccc
Confidence 788888877 5444322211 112 357887766554 3445568899999
No 201
>cd05015 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=23.22 E-value=1.3e+02 Score=24.72 Aligned_cols=59 Identities=22% Similarity=0.227 Sum_probs=35.0
Q ss_pred ccEEEEEcCcchhHHHHHHHhcccc-----C--CCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCC
Q psy13615 11 KRVAVLISGTGTNLKSLLEATSNRS-----D--IMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYK 71 (263)
Q Consensus 11 ~riavl~SG~Gsnl~al~~~~~~~~-----~--~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~ 71 (263)
..++|.+|.+|+..+-+..+...+. + .....++ +||+ +..+..+.|+.++.+++.++..
T Consensus 74 ~tlvi~iSkSG~T~Et~~~~~~a~~~l~~~~~~~~~~~~v-aiT~-~~s~l~~~a~~~~~~~~~~~~~ 139 (158)
T cd05015 74 TTLFIVISKSGTTLETLANARLAREWLEEAGGDDLAKHFV-AITD-NGSGLLKKAGIEGLNTFEIPDW 139 (158)
T ss_pred cEEEEEEECCcCCHHHHHHHHHHHHHHHHhccccccceEE-EEcC-CChHHHHHcCCCcceeeeCCCC
Confidence 3478899999988877652211111 1 1234444 5666 3444444488899998887543
No 202
>PRK13530 arsenate reductase; Provisional
Probab=23.12 E-value=1.1e+02 Score=24.50 Aligned_cols=54 Identities=13% Similarity=0.133 Sum_probs=27.5
Q ss_pred CccEEEEEcCc---chhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCE
Q psy13615 10 RKRVAVLISGT---GTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPT 65 (263)
Q Consensus 10 ~~riavl~SG~---Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~ 65 (263)
++||.|+..|+ ..-.++++.+.. .+.+.+.-+.+-....+-.+++..+++||+.
T Consensus 3 ~~~vLFvC~~N~cRS~mAEal~~~~~--~~~~~v~SAG~~~~~~~~~a~~~l~e~Gi~~ 59 (133)
T PRK13530 3 KKTIYFLCTGNSCRSQMAEGWGKQYL--GDKWNVYSAGIEAHGVNPNAIKAMKEVGIDI 59 (133)
T ss_pred CCEEEEEcCCchhHHHHHHHHHHHhc--CCCEEEECCCCCCCCCCHHHHHHHHHcCCCc
Confidence 66888877777 223444443211 1112111122212234556777788888875
No 203
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=23.00 E-value=2.9e+02 Score=25.60 Aligned_cols=56 Identities=14% Similarity=0.169 Sum_probs=35.6
Q ss_pred CccEEEEEcCc--chhHHHHHHHhccccCCCCceEEEEEecCCCC------hhhHHH-HHcCCCEEEeeCC
Q psy13615 10 RKRVAVLISGT--GTNLKSLLEATSNRSDIMRAEIVLVVSNKHNV------EGLNIA-RNAGIPTKVSTYK 71 (263)
Q Consensus 10 ~~riavl~SG~--Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a------~gl~~A-~~~gIP~~~v~~~ 71 (263)
..|+++..||. .|-+..++. + .++.++.+|..|+..- .+.+.+ +++|||..+++..
T Consensus 16 ~~kVvValSGGVDSsvla~ll~----~--~~G~~v~av~vd~G~~~~~E~e~~~~~~~~~lgi~~~vvd~~ 80 (311)
T TIGR00884 16 DAKVIIALSGGVDSSVAAVLAH----R--AIGDRLTCVFVDHGLLRKGEAEQVVKTFGDRLGLNLVYVDAK 80 (311)
T ss_pred CCcEEEEecCChHHHHHHHHHH----H--HhCCCEEEEEEeCCCCChHHHHHHHHHHHHHcCCcEEEEeCc
Confidence 46899999998 344444431 1 1234788888885431 334444 4799999998754
No 204
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=22.63 E-value=4.8e+02 Score=23.56 Aligned_cols=55 Identities=18% Similarity=0.181 Sum_probs=30.5
Q ss_pred ccEEEEEcCcchhHH---HHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCC
Q psy13615 11 KRVAVLISGTGTNLK---SLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYK 71 (263)
Q Consensus 11 ~riavl~SG~Gsnl~---al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~ 71 (263)
+||.+.+.|.|--.. ++.+... +.+.++.++..+. ..-.+..++.|+++..++..
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~----~~g~ev~vv~~~~--~~~~~~~~~~g~~~~~~~~~ 59 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELK----KRGWEVLYLGTAR--GMEARLVPKAGIEFHFIPSG 59 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHH----hCCCEEEEEECCC--chhhhccccCCCcEEEEecc
Confidence 578877766653333 3333221 2246887766644 11123345579999888753
No 205
>TIGR01736 FGAM_synth_II phosphoribosylformylglycinamidine synthase II. Phosphoribosylformylglycinamidine synthase is a single, long polypeptide in most Proteobacteria and eukarotes. Three proteins are required in Bacillus subtilis and many other species. This is the longest of the three and is designated PurL, phosphoribosylformylglycinamidine synthase II, or FGAM synthase II.
Probab=22.44 E-value=1.1e+02 Score=31.52 Aligned_cols=68 Identities=16% Similarity=0.143 Sum_probs=40.4
Q ss_pred HHHHHHHh--ccccCCCCceeeeccccccCCCC----cCCCcEEEeeeeeEEeec-CCcCCccccccCCcEEEEecCCCC
Q psy13615 79 SLQVMQKV--GAKYSDIAPFSQDGGETAELPGL----YQPGDYDLAGFAVGAVEK-ASLLPKVKDVAAGDVVIALPSSGI 151 (263)
Q Consensus 79 ~~~i~~~l--~~~~~~~~~~~~~gge~~~l~~~----~~~d~i~LAG~m~~~~~~-~~~in~hpsl~~g~~ii~Lp~~G~ 151 (263)
.+++++++ .|+. +++.++||.|..-... ..| .+..++.|.++. .+++.. ...++||.|+.+-..|.
T Consensus 491 l~~~~~gi~~~~~~---~gv~ivGG~ts~~~~~~~~~i~p---t~~v~~~G~~~~~~~~i~~-~~a~~Gd~i~l~g~~g~ 563 (715)
T TIGR01736 491 FVEAVKGLGDACRA---LGTPVVGGNVSLYNETNGVPIAP---TPTIGMVGLVEDVEKLLTS-NFKKEGDAIYLIGETKD 563 (715)
T ss_pred HHHHHHHHHHHHHH---hCCCcccceeeeccccCCCCCCC---cceEEEEEeccChhhccCc-ccCCCCCEEEEEeCCCC
Confidence 56777777 6666 9999999998642221 112 122345565543 344442 23468999987755554
Q ss_pred Cc
Q psy13615 152 HS 153 (263)
Q Consensus 152 ~~ 153 (263)
+.
T Consensus 564 ~~ 565 (715)
T TIGR01736 564 EL 565 (715)
T ss_pred Cc
Confidence 43
No 206
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=22.38 E-value=2.3e+02 Score=23.71 Aligned_cols=43 Identities=14% Similarity=0.040 Sum_probs=27.3
Q ss_pred EEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCHHHHHHHHHHh
Q psy13615 42 IVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLILSNSLQVMQKV 86 (263)
Q Consensus 42 iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~~~~~~i~~~l 86 (263)
-++++||++....-.+.+++|+..++-..+ .+.+....+++.+
T Consensus 52 ~laIiT~k~~~~~~~~l~~lgi~~~f~~~k--pkp~~~~~~~~~l 94 (169)
T TIGR02726 52 DVAIITSKKSGAVRHRAEELKIKRFHEGIK--KKTEPYAQMLEEM 94 (169)
T ss_pred EEEEEECCCcHHHHHHHHHCCCcEEEecCC--CCHHHHHHHHHHc
Confidence 345788887777777888888885554322 2335555555555
No 207
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=22.35 E-value=1.4e+02 Score=25.46 Aligned_cols=32 Identities=22% Similarity=0.261 Sum_probs=23.6
Q ss_pred ceEEEEEecCCC--ChhhHHHHHcCCCEEEeeCC
Q psy13615 40 AEIVLVVSNKHN--VEGLNIARNAGIPTKVSTYK 71 (263)
Q Consensus 40 ~~iv~Visn~~~--a~gl~~A~~~gIP~~~v~~~ 71 (263)
.|-+.+.+.++. .+.+++|++.|||+..++..
T Consensus 56 ~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~d~~ 89 (257)
T PF13407_consen 56 VDGIIVSPVDPDSLAPFLEKAKAAGIPVVTVDSD 89 (257)
T ss_dssp ESEEEEESSSTTTTHHHHHHHHHTTSEEEEESST
T ss_pred CCEEEecCCCHHHHHHHHHHHhhcCceEEEEecc
Confidence 455555555543 46799999999999998766
No 208
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=22.08 E-value=3.6e+02 Score=24.52 Aligned_cols=84 Identities=14% Similarity=0.194 Sum_probs=44.6
Q ss_pred EEEcCcchhHHHHH-HHhccccCCCCceEEEEEecCCCC--hhhHHHHHcCCCEEEeeCCCCCCHHHHHHHHHHhccccC
Q psy13615 15 VLISGTGTNLKSLL-EATSNRSDIMRAEIVLVVSNKHNV--EGLNIARNAGIPTKVSTYKHTLILSNSLQVMQKVGAKYS 91 (263)
Q Consensus 15 vl~SG~Gsnl~al~-~~~~~~~~~l~~~iv~Visn~~~a--~gl~~A~~~gIP~~~v~~~~~~~~~~~~~i~~~l~~~~~ 91 (263)
++++|.-+.+-.-+ +..+ +. +.++++|-=+.... -.-+.-.++++.+.++. .|..+.+..+++.+.+..+.
T Consensus 9 ~lITGASsGIG~~~A~~lA-~~---g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~-~DLs~~~~~~~l~~~l~~~~- 82 (265)
T COG0300 9 ALITGASSGIGAELAKQLA-RR---GYNLILVARREDKLEALAKELEDKTGVEVEVIP-ADLSDPEALERLEDELKERG- 82 (265)
T ss_pred EEEECCCchHHHHHHHHHH-HC---CCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEE-CcCCChhHHHHHHHHHHhcC-
Confidence 45666644444333 2222 22 35676655543222 22344555677776663 34444455566666662222
Q ss_pred CCCceeeeccccccCCCCcCCC-cEEEeeeee
Q psy13615 92 DIAPFSQDGGETAELPGLYQPG-DYDLAGFAV 122 (263)
Q Consensus 92 ~~~~~~~~gge~~~l~~~~~~d-~i~LAG~m~ 122 (263)
+++| +|.-|||+.
T Consensus 83 ------------------~~IdvLVNNAG~g~ 96 (265)
T COG0300 83 ------------------GPIDVLVNNAGFGT 96 (265)
T ss_pred ------------------CcccEEEECCCcCC
Confidence 5677 788899986
No 209
>PRK01213 phosphoribosylformylglycinamidine synthase II; Provisional
Probab=22.02 E-value=81 Score=32.62 Aligned_cols=69 Identities=12% Similarity=0.052 Sum_probs=39.5
Q ss_pred HHHHHHHh--ccccCCCCceeeeccccccCCCCcCCC-cEEEeeeeeEEeecCCcCCccccc-cCCcEEEEecCCCC
Q psy13615 79 SLQVMQKV--GAKYSDIAPFSQDGGETAELPGLYQPG-DYDLAGFAVGAVEKASLLPKVKDV-AAGDVVIALPSSGI 151 (263)
Q Consensus 79 ~~~i~~~l--~~~~~~~~~~~~~gge~~~l~~~~~~d-~i~LAG~m~~~~~~~~~in~hpsl-~~g~~ii~Lp~~G~ 151 (263)
..++++++ .|+. +++.++||.+..-.+.-... .-.+..++.|.++..+.+.. +.+ ++||.|+.+-..|.
T Consensus 500 l~~~~~Gi~~a~~~---~gvpivGG~~s~~n~~~~~~i~pt~~vt~vG~~~~~~~~~~-~~~k~~GD~I~l~g~~~~ 572 (724)
T PRK01213 500 FVEAVRGLADACRA---LGTPVVGGNVSLYNETGGTAIYPTPVIGMVGLIDDVSKRTT-SGFKKEGDLIYLLGETKD 572 (724)
T ss_pred HHHHHHHHHHHHHH---hCCCcccceeeeeCCCCCcccCCcceEEEEEEecCHhhCcC-hhcCCCCCEEEEEcCCCC
Confidence 66777777 6666 99999999985422211001 11233345666642222222 555 78999987654443
No 210
>PF00733 Asn_synthase: Asparagine synthase; InterPro: IPR001962 This domain is always found associated with (IPR000583 from INTERPRO). Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B (6.3.5.4 from EC) catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase [].; GO: 0004066 asparagine synthase (glutamine-hydrolyzing) activity, 0006529 asparagine biosynthetic process; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A 1Q15_D 1Q19_C 1CT9_C 3K32_F.
Probab=21.95 E-value=1.8e+02 Score=24.66 Aligned_cols=63 Identities=21% Similarity=0.231 Sum_probs=36.2
Q ss_pred eeeeccCCccEEEEEcCc-chhHHHHHHHhccccCCCCceEEEEEecCCCC------hhhHHHHHcCCCEEEeeC
Q psy13615 3 VKTRMVQRKRVAVLISGT-GTNLKSLLEATSNRSDIMRAEIVLVVSNKHNV------EGLNIARNAGIPTKVSTY 70 (263)
Q Consensus 3 ~~~~m~~~~riavl~SG~-Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a------~gl~~A~~~gIP~~~v~~ 70 (263)
|+.|+....+|+++.||. .|.+-+.+-+ + .....+.++-.+-+++ .+-+.|+..|++...+..
T Consensus 10 v~~rl~~~~~i~~~LSGGlDSs~i~~~~~---~--~~~~~~~~~t~~~~~~~~~e~~~a~~va~~~~~~~~~~~~ 79 (255)
T PF00733_consen 10 VARRLRSDKPIGILLSGGLDSSAIAALAA---R--QGGPPIKTFTIGFEDDDYDEREYARKVARHLGLEHHEIEL 79 (255)
T ss_dssp HHHHCGCTSEEEEE--SSHHHHHHHHHHH---H--TCCSEEEEEEEECSSCC--HHHHHHHHHHHHT-EEEEEEE
T ss_pred HHHHHhcCCCEEEECCCChhHHHHHHHHH---H--hhCCceeEEEEEcCCCcchhHHHHHHHhcccccccceeee
Confidence 456777788999999998 5555554422 1 1123444444433332 456778899999777654
No 211
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=21.13 E-value=4.1e+02 Score=25.28 Aligned_cols=63 Identities=22% Similarity=0.236 Sum_probs=36.4
Q ss_pred CCccEEEEEcCc-chhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCHHHHHHHHHHh
Q psy13615 9 QRKRVAVLISGT-GTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLILSNSLQVMQKV 86 (263)
Q Consensus 9 ~~~riavl~SG~-Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~~~~~~i~~~l 86 (263)
+.+|+-.|.||. |- =- .+++ .+++.++++|=- -.+|++.+.|. -.++++-.+ .+..+++++..
T Consensus 11 ~a~kvmLLGSGELGK-Ev-aIe~-----QRLG~eViAVDr-Y~~APAmqVAh----rs~Vi~MlD---~~al~avv~re 74 (394)
T COG0027 11 QATKVMLLGSGELGK-EV-AIEA-----QRLGVEVIAVDR-YANAPAMQVAH----RSYVIDMLD---GDALRAVVERE 74 (394)
T ss_pred CCeEEEEecCCccch-HH-HHHH-----HhcCCEEEEecC-cCCChhhhhhh----heeeeeccC---HHHHHHHHHhh
Confidence 356888899998 53 22 2322 356778866532 45788887666 345555443 34555555533
No 212
>TIGR02128 G6PI_arch bifunctional phosphoglucose/phosphomannose isomerase. This bifunctional isomerase is a member of the larger PGI superfamily and only distantly related to other glucose-6-phosphate isomerases. The family is limited to the archaea.
Probab=21.09 E-value=1.6e+02 Score=27.26 Aligned_cols=59 Identities=14% Similarity=0.189 Sum_probs=35.8
Q ss_pred CCccEEEEEcCcchhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCC
Q psy13615 9 QRKRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKH 72 (263)
Q Consensus 9 ~~~riavl~SG~Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~ 72 (263)
.+..+.+.+|.+|++.+.+......+.. ++.++++-+|. +-.+.|+++|.++..++...
T Consensus 65 ~~~dlvI~iS~SG~t~e~~~a~~~A~~~--g~~ii~iT~~g---~L~~~a~~~~~~~i~vP~~~ 123 (308)
T TIGR02128 65 DGKTLLIAVSYSGNTEETLSAVEEAKKK--GAKVIAITSGG---RLEEMAKERGLDVIKIPKGL 123 (308)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHc--CCEEEEECCCc---HHHHHHHhcCCeEEEcCCCC
Confidence 3445889999998766654311111212 45666555432 45667888899988876543
No 213
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=20.98 E-value=2.7e+02 Score=25.88 Aligned_cols=70 Identities=23% Similarity=0.289 Sum_probs=39.0
Q ss_pred cccCCCCCCCC-CCeeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeC
Q psy13615 179 RKYNNDKGPNT-GGMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDN 257 (263)
Q Consensus 179 r~~~~d~G~dT-Ggmga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n 257 (263)
+.|+.+.-.-. ||-.-.+|-+ ++++..++++ ++..++.++| + ..|.--+.++.++.. -+.-++|+|
T Consensus 217 ~fydye~Ky~~~gg~~~~~pa~-lt~~~~~~i~-~lA~~a~~al---g--~~g~~rvDf~~~~~~------g~~~l~EvN 283 (317)
T COG1181 217 EFYDYEAKYLSTGGAQYDIPAG-LTDEIHEEIK-ELALRAYKAL---G--CLGLARVDFFVDDDE------GEFVLLEVN 283 (317)
T ss_pred eEEeeeccccCCCCceeeCCCC-CCHHHHHHHH-HHHHHHHHhc---C--CCceEEEEEEEECCC------CCEEEEEEe
Confidence 45566655544 7633333432 5777766664 4444444444 2 234444566655511 234589999
Q ss_pred CCCC
Q psy13615 258 PEEG 261 (263)
Q Consensus 258 ~~~g 261 (263)
..+|
T Consensus 284 t~PG 287 (317)
T COG1181 284 TNPG 287 (317)
T ss_pred CCCC
Confidence 9998
No 214
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=20.64 E-value=1.3e+02 Score=21.76 Aligned_cols=50 Identities=22% Similarity=0.429 Sum_probs=26.3
Q ss_pred cEEEEEcCc-chhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEE
Q psy13615 12 RVAVLISGT-GTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTK 66 (263)
Q Consensus 12 riavl~SG~-Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~ 66 (263)
||++++.|+ |+.+-.-+ . +.+..+.+|.. ++++.....-+.++++++.+.
T Consensus 1 kI~iIG~G~mg~al~~~l---~-~~g~~~~~v~~-~~~r~~~~~~~~~~~~~~~~~ 51 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGL---L-ASGIKPHEVII-VSSRSPEKAAELAKEYGVQAT 51 (96)
T ss_dssp EEEEESTSHHHHHHHHHH---H-HTTS-GGEEEE-EEESSHHHHHHHHHHCTTEEE
T ss_pred CEEEECCCHHHHHHHHHH---H-HCCCCceeEEe-eccCcHHHHHHHHHhhccccc
Confidence 688887776 55444333 1 12222356654 434544455666788774433
No 215
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=20.38 E-value=4.3e+02 Score=20.79 Aligned_cols=50 Identities=8% Similarity=0.072 Sum_probs=28.9
Q ss_pred CCCCceEEEEEecCCCC---------------hhhHHHHHcCCCEEEeeCCCCCCHHHHHHHHHHh
Q psy13615 36 DIMRAEIVLVVSNKHNV---------------EGLNIARNAGIPTKVSTYKHTLILSNSLQVMQKV 86 (263)
Q Consensus 36 ~~l~~~iv~Visn~~~a---------------~gl~~A~~~gIP~~~v~~~~~~~~~~~~~i~~~l 86 (263)
...+.++++++.+++.. ...+.+++++|...++.... .+.+..+++++.+
T Consensus 100 ~~~g~~vvg~~d~~~~~~~~~~~~~~~lg~~~~l~~~~~~~~id~v~ial~~-~~~~~i~~ii~~~ 164 (175)
T PF13727_consen 100 PRLGYRVVGFVDDDPSDRGPEIDGVPVLGDLDDLPELVREHDIDEVIIALPW-SEEEQIKRIIEEL 164 (175)
T ss_dssp -SSSEEEEEEE-S-GGGTT-EETTEEEE--GGGHHHHHHHHT--EEEE--TT-S-HHHHHHHHHHH
T ss_pred hhcCceEEEEEeCchhhccCcccCceeEcCHHHHHHHHHhCCCCEEEEEcCc-cCHHHHHHHHHHH
Confidence 44578899999987742 23577888888877775322 3346667777755
No 216
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=20.28 E-value=74 Score=25.06 Aligned_cols=35 Identities=23% Similarity=0.246 Sum_probs=22.3
Q ss_pred ccEEEEEcCcchhHHHH--HHHhccccCCCCceEEEEEecC
Q psy13615 11 KRVAVLISGTGTNLKSL--LEATSNRSDIMRAEIVLVVSNK 49 (263)
Q Consensus 11 ~riavl~SG~Gsnl~al--~~~~~~~~~~l~~~iv~Visn~ 49 (263)
|||.+.+||++..++.. +++.. +.+.++.++.|..
T Consensus 1 k~i~l~vtGs~~~~~~~~~l~~L~----~~g~~v~vv~S~~ 37 (129)
T PF02441_consen 1 KRILLGVTGSIAAYKAPDLLRRLK----RAGWEVRVVLSPS 37 (129)
T ss_dssp -EEEEEE-SSGGGGGHHHHHHHHH----TTTSEEEEEESHH
T ss_pred CEEEEEEECHHHHHHHHHHHHHHh----hCCCEEEEEECCc
Confidence 68999999997776633 33221 2257888888864
No 217
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=20.17 E-value=60 Score=19.67 Aligned_cols=15 Identities=27% Similarity=0.133 Sum_probs=11.2
Q ss_pred ccccccCCceeeecC
Q psy13615 235 GFTEGTVTAKVFSSR 249 (263)
Q Consensus 235 gl~~~~~~~~~~~~~ 249 (263)
.+.+.+.|||++++.
T Consensus 15 qITIeD~GPKv~~lg 29 (30)
T PF07492_consen 15 QITIEDTGPKVLSLG 29 (30)
T ss_pred EEEEecCCCeEEecc
Confidence 356788999998653
No 218
>KOG1145|consensus
Probab=20.04 E-value=4e+02 Score=27.35 Aligned_cols=94 Identities=20% Similarity=0.260 Sum_probs=50.4
Q ss_pred eeeccCCccEEEEEcCcchhHHHHHHHhccccCCCCceEEEEEecCCC------ChhhHHHHHcCCCEEEe-eCCCCCCH
Q psy13615 4 KTRMVQRKRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHN------VEGLNIARNAGIPTKVS-TYKHTLIL 76 (263)
Q Consensus 4 ~~~m~~~~riavl~SG~Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~------a~gl~~A~~~gIP~~~v-~~~~~~~~ 76 (263)
++.|.+.++|.||=+. |+-.=..+.+ + |.--.||+.++.--.| ..+++.|++.++|..+- +..+...
T Consensus 194 ~V~~p~G~~iTFLDTP-GHaAF~aMRa---R-GA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~- 267 (683)
T KOG1145|consen 194 TVTLPSGKSITFLDTP-GHAAFSAMRA---R-GANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPG- 267 (683)
T ss_pred EEecCCCCEEEEecCC-cHHHHHHHHh---c-cCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCCC-
Confidence 4566777788877665 6533333322 2 2222465444443223 37899999999997764 3333222
Q ss_pred HHHHHHHHHhccccCCCCceeeeccccccC
Q psy13615 77 SNSLQVMQKVGAKYSDIAPFSQDGGETAEL 106 (263)
Q Consensus 77 ~~~~~i~~~l~~~~~~~~~~~~~gge~~~l 106 (263)
+..+.+++.| .++...+--+||+...+
T Consensus 268 a~pekv~~eL---~~~gi~~E~~GGdVQvi 294 (683)
T KOG1145|consen 268 ANPEKVKREL---LSQGIVVEDLGGDVQVI 294 (683)
T ss_pred CCHHHHHHHH---HHcCccHHHcCCceeEE
Confidence 3334445555 11234445566666543
Done!