Query psy13615
Match_columns 263
No_of_seqs 211 out of 2534
Neff 6.8
Searched_HMMs 29240
Date Fri Aug 16 15:43:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13615.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13615hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ds3_A Phosphoribosylglycinami 100.0 3.3E-33 1.1E-37 242.8 10.6 177 7-226 5-196 (209)
2 3p9x_A Phosphoribosylglycinami 100.0 5.5E-33 1.9E-37 241.6 10.0 173 10-224 2-189 (211)
3 3tqr_A Phosphoribosylglycinami 100.0 1.4E-32 4.7E-37 239.8 10.4 175 10-227 5-194 (215)
4 3kcq_A Phosphoribosylglycinami 100.0 6.2E-32 2.1E-36 235.7 10.0 173 7-225 5-191 (215)
5 3da8_A Probable 5'-phosphoribo 100.0 2.5E-31 8.5E-36 231.9 11.5 174 10-227 12-200 (215)
6 3o1l_A Formyltetrahydrofolate 100.0 9.4E-31 3.2E-35 238.6 11.6 180 3-226 97-291 (302)
7 1jkx_A GART;, phosphoribosylgl 100.0 1.1E-30 3.7E-35 227.5 10.5 173 11-225 1-188 (212)
8 3nrb_A Formyltetrahydrofolate 100.0 2.7E-31 9.1E-36 240.9 6.1 175 9-226 87-275 (287)
9 1meo_A Phosophoribosylglycinam 100.0 1E-30 3.6E-35 227.1 9.6 173 11-225 1-188 (209)
10 3n0v_A Formyltetrahydrofolate 100.0 1.3E-30 4.5E-35 236.2 10.2 180 3-226 82-276 (286)
11 3lou_A Formyltetrahydrofolate 100.0 1.6E-30 5.4E-35 236.3 10.0 174 9-226 94-281 (292)
12 3obi_A Formyltetrahydrofolate 100.0 1.6E-30 5.5E-35 235.9 7.2 174 9-226 88-276 (288)
13 3av3_A Phosphoribosylglycinami 100.0 6.4E-30 2.2E-34 222.6 9.8 174 11-226 4-192 (212)
14 2ywr_A Phosphoribosylglycinami 100.0 2E-29 6.7E-34 220.1 9.6 173 11-225 2-189 (216)
15 3auf_A Glycinamide ribonucleot 100.0 2.3E-29 7.8E-34 221.5 9.9 174 10-225 22-210 (229)
16 2bln_A Protein YFBG; transfera 99.8 4.3E-21 1.5E-25 175.3 7.2 160 11-224 1-183 (305)
17 1fmt_A Methionyl-tRNA FMet for 99.8 9.3E-21 3.2E-25 173.7 8.0 162 9-224 2-189 (314)
18 1z7e_A Protein aRNA; rossmann 99.8 1.8E-20 6.2E-25 185.9 7.0 160 11-224 1-183 (660)
19 3q0i_A Methionyl-tRNA formyltr 99.8 5.5E-20 1.9E-24 168.8 6.6 165 6-224 3-193 (318)
20 2bw0_A 10-FTHFDH, 10-formyltet 99.8 9.8E-20 3.4E-24 167.9 5.2 170 6-223 18-207 (329)
21 3rfo_A Methionyl-tRNA formyltr 99.7 6.4E-18 2.2E-22 155.0 8.8 161 10-224 4-190 (317)
22 3tqq_A Methionyl-tRNA formyltr 99.7 9.7E-18 3.3E-22 153.6 9.5 161 10-224 2-188 (314)
23 3mjf_A Phosphoribosylamine--gl 99.5 9.4E-15 3.2E-19 138.5 9.7 112 141-263 186-297 (431)
24 3lp8_A Phosphoribosylamine-gly 99.5 2E-14 6.8E-19 136.8 8.0 112 140-263 201-312 (442)
25 3kiz_A Phosphoribosylformylgly 99.3 1E-13 3.6E-18 129.8 -2.2 138 11-162 47-216 (394)
26 3mdo_A Putative phosphoribosyl 99.3 1.1E-13 3.9E-18 129.3 -2.4 138 11-162 46-215 (389)
27 1vkz_A Phosphoribosylamine--gl 99.1 2.6E-10 9E-15 106.9 10.3 110 140-263 184-293 (412)
28 2yw2_A Phosphoribosylamine--gl 99.0 3.2E-10 1.1E-14 106.1 8.6 112 140-263 180-291 (424)
29 2xcl_A Phosphoribosylamine--gl 99.0 1.6E-10 5.6E-15 108.1 6.5 112 140-263 180-291 (422)
30 2yrx_A Phosphoribosylglycinami 99.0 3.7E-10 1.3E-14 107.0 8.8 112 140-263 201-312 (451)
31 2qk4_A Trifunctional purine bi 99.0 2.6E-10 9.1E-15 107.9 7.1 111 141-263 208-318 (452)
32 2ip4_A PURD, phosphoribosylami 99.0 7.7E-10 2.6E-14 103.4 10.1 111 140-263 175-285 (417)
33 1zgh_A Methionyl-tRNA formyltr 98.9 5E-11 1.7E-15 106.3 -2.0 84 110-214 76-164 (260)
34 3p4e_A Phosphoribosylformylgly 98.8 1.1E-09 3.8E-14 101.3 2.1 134 13-159 64-201 (349)
35 3m84_A Phosphoribosylformylgly 98.8 1E-09 3.6E-14 101.5 1.2 135 13-160 63-201 (350)
36 2btu_A Phosphoribosyl-aminoimi 98.4 8.8E-08 3E-12 88.1 1.6 131 17-160 61-195 (346)
37 2z01_A Phosphoribosylformylgly 98.3 1.4E-07 4.9E-12 86.8 1.0 134 13-159 59-196 (348)
38 2v9y_A Phosphoribosylformylgly 98.2 3.2E-07 1.1E-11 84.2 2.0 131 17-159 33-167 (334)
39 3vti_C Hydrogenase maturation 97.5 1.4E-05 4.7E-10 72.4 -0.7 104 42-157 53-161 (314)
40 3k5i_A Phosphoribosyl-aminoimi 97.4 0.00018 6.3E-09 67.0 6.0 87 154-262 208-294 (403)
41 3aw8_A PURK, phosphoribosylami 97.3 0.00048 1.6E-08 62.8 7.7 99 140-263 167-266 (369)
42 3ax6_A Phosphoribosylaminoimid 97.1 0.00077 2.6E-08 61.6 7.1 99 140-263 164-265 (380)
43 4ffl_A PYLC; amino acid, biosy 97.1 0.00094 3.2E-08 60.7 7.3 81 155-263 167-247 (363)
44 3vot_A L-amino acid ligase, BL 96.8 0.0038 1.3E-07 58.0 9.2 99 141-262 194-293 (425)
45 2z1u_A Hydrogenase expression/ 96.8 0.00029 9.8E-09 64.5 1.4 89 63-157 88-182 (343)
46 2rb9_A HYPE protein; hydrogena 96.7 0.00045 1.5E-08 63.0 1.7 92 62-158 87-183 (334)
47 3mcq_A Thiamine-monophosphate 96.6 0.0005 1.7E-08 62.3 0.9 86 62-158 78-167 (319)
48 1kjq_A GART 2, phosphoribosylg 96.3 0.0081 2.8E-07 54.8 7.6 98 140-263 189-286 (391)
49 3c9u_A Thiamine monophosphate 96.3 0.00027 9.1E-09 64.9 -2.5 85 62-158 113-202 (342)
50 2z04_A Phosphoribosylaminoimid 96.0 0.0041 1.4E-07 56.3 3.9 84 153-263 174-258 (365)
51 2dwc_A PH0318, 433AA long hypo 95.9 0.012 4.2E-07 54.6 6.8 57 192-263 243-299 (433)
52 4e4t_A Phosphoribosylaminoimid 95.9 0.024 8.2E-07 53.0 8.6 97 140-262 207-306 (419)
53 2z1e_A Hydrogenase expression/ 95.4 0.0044 1.5E-07 56.2 1.5 86 62-156 90-180 (338)
54 1iow_A DD-ligase, DDLB, D-ALA\ 94.9 0.032 1.1E-06 48.6 5.6 63 186-262 215-277 (306)
55 3u0o_A Selenide, water dikinas 94.9 0.014 4.7E-07 53.5 3.2 83 59-151 94-182 (347)
56 3r5x_A D-alanine--D-alanine li 94.8 0.016 5.5E-07 50.9 3.4 68 180-263 204-271 (307)
57 1a9x_A Carbamoyl phosphate syn 94.6 0.066 2.3E-06 55.9 7.9 88 155-262 761-848 (1073)
58 2yyd_A Selenide, water dikinas 94.3 0.019 6.4E-07 52.5 2.7 81 60-150 96-182 (345)
59 3se7_A VANA; alpha-beta struct 94.2 0.17 5.9E-06 45.5 8.8 93 154-261 213-311 (346)
60 1e4e_A Vancomycin/teicoplanin 94.1 0.21 7.2E-06 44.7 9.1 105 140-262 202-312 (343)
61 2pvp_A D-alanine-D-alanine lig 94.0 0.051 1.8E-06 49.8 5.0 105 140-262 222-327 (367)
62 2r85_A PURP protein PF1517; AT 93.9 0.087 3E-06 46.4 6.2 67 186-262 224-290 (334)
63 3k3p_A D-alanine--D-alanine li 93.9 0.14 4.9E-06 47.2 7.8 103 141-262 239-343 (383)
64 4dim_A Phosphoribosylglycinami 93.8 0.082 2.8E-06 48.3 5.8 59 189-262 223-282 (403)
65 2yxz_A Thiamin-monophosphate k 93.6 0.019 6.6E-07 51.3 1.3 80 64-156 83-168 (311)
66 1w96_A ACC, acetyl-coenzyme A 93.2 0.13 4.6E-06 49.5 6.7 56 195-263 319-375 (554)
67 2vpq_A Acetyl-COA carboxylase; 92.9 0.2 6.7E-06 46.6 7.0 57 193-262 238-295 (451)
68 1ulz_A Pyruvate carboxylase N- 92.8 0.2 6.7E-06 46.6 7.0 56 194-262 239-294 (451)
69 2w70_A Biotin carboxylase; lig 92.8 0.2 6.7E-06 46.6 6.8 54 194-261 241-294 (449)
70 2i87_A D-alanine-D-alanine lig 92.5 0.37 1.3E-05 43.6 8.1 65 184-262 249-313 (364)
71 3tqt_A D-alanine--D-alanine li 92.4 0.38 1.3E-05 44.1 8.2 103 140-261 217-322 (372)
72 1ehi_A LMDDL2, D-alanine:D-lac 92.2 0.22 7.5E-06 45.5 6.2 61 188-262 262-323 (377)
73 3e5n_A D-alanine-D-alanine lig 92.0 0.46 1.6E-05 43.7 8.3 67 182-262 274-341 (386)
74 3i12_A D-alanine-D-alanine lig 91.9 0.66 2.3E-05 42.0 9.1 68 180-261 253-321 (364)
75 3lwb_A D-alanine--D-alanine li 91.9 0.14 4.9E-06 46.8 4.7 61 186-261 276-336 (373)
76 3ac6_A Phosphoribosylformylgly 91.8 0.063 2.2E-06 53.7 2.2 91 64-158 480-579 (725)
77 3q2o_A Phosphoribosylaminoimid 91.5 0.53 1.8E-05 42.9 8.0 96 140-262 183-281 (389)
78 1vk3_A Phosphoribosylformylgly 91.4 0.058 2E-06 53.1 1.5 84 64-155 114-203 (615)
79 3eth_A Phosphoribosylaminoimid 91.3 0.27 9.2E-06 44.9 5.8 95 141-263 149-246 (355)
80 3fd5_A Selenide, water dikinas 91.0 0.19 6.5E-06 46.7 4.5 67 77-153 141-209 (394)
81 3rjz_A N-type ATP pyrophosphat 90.9 0.81 2.8E-05 39.7 8.1 73 7-86 1-86 (237)
82 2qf7_A Pyruvate carboxylase pr 90.7 0.34 1.2E-05 51.1 6.5 62 189-263 254-316 (1165)
83 3ac6_A Phosphoribosylformylgly 90.3 0.14 4.8E-06 51.2 3.1 87 64-157 117-215 (725)
84 2dzd_A Pyruvate carboxylase; b 90.1 0.44 1.5E-05 44.4 6.2 56 193-262 244-299 (461)
85 1a9x_A Carbamoyl phosphate syn 88.0 1.8 6.3E-05 45.1 9.6 65 185-261 240-305 (1073)
86 3k32_A Uncharacterized protein 86.5 0.79 2.7E-05 38.2 4.9 59 6-71 2-66 (203)
87 4eg0_A D-alanine--D-alanine li 86.4 0.83 2.8E-05 40.2 5.2 67 181-261 219-285 (317)
88 1nvm_B Acetaldehyde dehydrogen 86.2 1.2 4.2E-05 39.8 6.3 55 7-66 1-56 (312)
89 3vmm_A Alanine-anticapsin liga 84.6 2.1 7.3E-05 40.3 7.4 58 189-261 273-332 (474)
90 2fb9_A D-alanine:D-alanine lig 84.4 0.94 3.2E-05 40.2 4.6 66 181-261 226-291 (322)
91 3orq_A N5-carboxyaminoimidazol 84.0 1.5 5.3E-05 39.7 5.9 32 224-262 246-277 (377)
92 1r0k_A 1-deoxy-D-xylulose 5-ph 83.0 1.4 4.8E-05 40.9 5.2 58 7-69 1-60 (388)
93 3glk_A Acetyl-COA carboxylase 82.4 2.4 8.3E-05 40.8 6.9 56 194-262 312-367 (540)
94 3jrx_A Acetyl-COA carboxylase 81.9 2.6 9E-05 41.1 6.9 57 193-262 327-383 (587)
95 3ouz_A Biotin carboxylase; str 81.9 2.3 7.9E-05 39.3 6.3 56 193-261 243-298 (446)
96 4fu0_A D-alanine--D-alanine li 81.6 5.2 0.00018 35.8 8.5 66 182-261 253-318 (357)
97 3a06_A 1-deoxy-D-xylulose 5-ph 79.0 2.3 8E-05 39.2 5.2 55 10-70 3-59 (376)
98 3u9t_A MCC alpha, methylcroton 77.6 2.4 8.1E-05 42.0 5.1 57 192-261 264-320 (675)
99 3va7_A KLLA0E08119P; carboxyla 77.1 3.7 0.00013 43.6 6.7 59 191-261 265-323 (1236)
100 3n6r_A Propionyl-COA carboxyla 74.9 3 0.0001 41.3 5.0 56 193-261 239-294 (681)
101 2zod_A Selenide, water dikinas 72.8 5.1 0.00017 36.0 5.7 81 56-146 92-178 (345)
102 2pn1_A Carbamoylphosphate synt 72.4 3.7 0.00013 35.8 4.6 30 225-262 245-274 (331)
103 3hbl_A Pyruvate carboxylase; T 70.9 6.7 0.00023 41.3 6.8 56 192-261 241-296 (1150)
104 2r7k_A 5-formaminoimidazole-4- 68.7 7.1 0.00024 35.5 5.7 56 197-261 260-316 (361)
105 1k92_A Argininosuccinate synth 68.7 9.2 0.00031 36.1 6.6 61 3-70 3-72 (455)
106 3uuw_A Putative oxidoreductase 66.1 4.4 0.00015 35.3 3.6 53 6-65 2-56 (308)
107 1uc8_A LYSX, lysine biosynthes 64.7 6.4 0.00022 33.0 4.3 24 230-261 232-255 (280)
108 3bl5_A Queuosine biosynthesis 64.1 13 0.00044 30.3 6.0 56 9-71 2-65 (219)
109 1f0k_A MURG, UDP-N-acetylgluco 63.8 17 0.00057 31.5 7.0 59 7-71 1-64 (364)
110 3okp_A GDP-mannose-dependent a 61.3 26 0.00089 30.3 7.9 76 7-90 1-84 (394)
111 3q2i_A Dehydrogenase; rossmann 61.0 7.3 0.00025 34.6 4.1 55 3-63 4-61 (354)
112 3dty_A Oxidoreductase, GFO/IDH 60.5 11 0.00038 34.1 5.4 53 6-64 8-64 (398)
113 4gmf_A Yersiniabactin biosynth 60.2 9.2 0.00031 34.9 4.7 51 10-66 7-57 (372)
114 3v5n_A Oxidoreductase; structu 59.3 7 0.00024 35.9 3.8 56 6-64 33-89 (417)
115 4gqa_A NAD binding oxidoreduct 55.8 9.4 0.00032 34.6 4.0 62 6-68 22-86 (412)
116 3imk_A Putative molybdenum car 55.8 43 0.0015 27.0 7.4 59 40-119 74-136 (158)
117 3db2_A Putative NADPH-dependen 55.3 8 0.00027 34.3 3.4 51 7-64 2-53 (354)
118 3df7_A Putative ATP-grAsp supe 54.6 17 0.00057 31.8 5.3 52 195-262 199-251 (305)
119 3euw_A MYO-inositol dehydrogen 53.7 11 0.00036 33.3 3.9 22 7-28 1-23 (344)
120 4huj_A Uncharacterized protein 52.6 19 0.00066 29.6 5.2 52 6-65 19-71 (220)
121 4fb5_A Probable oxidoreductase 52.3 13 0.00044 32.9 4.3 61 8-69 23-85 (393)
122 2nz2_A Argininosuccinate synth 50.8 24 0.00083 32.7 6.0 57 7-70 2-65 (413)
123 4had_A Probable oxidoreductase 50.5 13 0.00044 32.8 3.9 55 7-68 20-76 (350)
124 3ec7_A Putative dehydrogenase; 50.3 27 0.00091 31.1 6.1 50 10-65 23-73 (357)
125 1u2p_A Ptpase, low molecular w 50.1 14 0.00048 29.4 3.8 60 7-66 1-70 (163)
126 1wy5_A TILS, hypothetical UPF0 49.5 33 0.0011 30.1 6.4 62 6-70 19-92 (317)
127 3u3x_A Oxidoreductase; structu 47.1 15 0.00051 32.9 3.9 51 7-65 23-75 (361)
128 3s2u_A UDP-N-acetylglucosamine 45.4 28 0.00095 30.9 5.3 55 11-71 3-60 (365)
129 3rc1_A Sugar 3-ketoreductase; 44.7 16 0.00054 32.5 3.6 51 8-66 25-78 (350)
130 2cwd_A Low molecular weight ph 42.8 21 0.00071 28.4 3.7 60 7-66 1-70 (161)
131 4h3v_A Oxidoreductase domain p 42.3 14 0.00049 32.5 2.9 60 7-68 4-65 (390)
132 1tlt_A Putative oxidoreductase 42.1 33 0.0011 29.7 5.2 50 8-64 3-54 (319)
133 2pg3_A Queuosine biosynthesis 41.5 47 0.0016 27.4 5.9 54 11-71 3-65 (232)
134 1ni5_A Putative cell cycle pro 40.1 61 0.0021 29.9 6.9 59 10-71 13-82 (433)
135 2der_A TRNA-specific 2-thiouri 39.7 21 0.00073 32.6 3.7 58 7-71 13-87 (380)
136 3e18_A Oxidoreductase; dehydro 39.6 16 0.00056 32.5 2.9 49 8-64 3-52 (359)
137 3evn_A Oxidoreductase, GFO/IDH 39.1 20 0.00067 31.4 3.3 49 9-64 4-53 (329)
138 1vl2_A Argininosuccinate synth 38.7 48 0.0016 30.9 5.9 55 10-71 14-75 (421)
139 2hma_A Probable tRNA (5-methyl 38.6 34 0.0012 31.1 4.9 55 10-71 9-79 (376)
140 1gsa_A Glutathione synthetase; 38.3 45 0.0015 28.1 5.4 34 212-260 253-286 (316)
141 3ohs_X Trans-1,2-dihydrobenzen 38.3 30 0.001 30.2 4.4 52 10-66 2-54 (334)
142 1jl3_A Arsenate reductase; alp 38.3 31 0.0011 26.5 4.0 54 10-65 3-59 (139)
143 1qv9_A F420-dependent methylen 38.0 21 0.00071 31.1 3.0 34 39-72 64-101 (283)
144 1q0q_A 1-deoxy-D-xylulose 5-ph 37.5 42 0.0014 31.2 5.2 56 9-69 8-65 (406)
145 1ccw_A Protein (glutamate muta 36.7 1.1E+02 0.0037 23.2 7.0 71 10-86 3-78 (137)
146 3n07_A 3-deoxy-D-manno-octulos 36.3 57 0.0019 26.3 5.5 44 42-87 70-113 (195)
147 3a2k_A TRNA(Ile)-lysidine synt 35.6 49 0.0017 30.8 5.5 63 6-71 13-87 (464)
148 4dim_A Phosphoribosylglycinami 35.0 76 0.0026 28.1 6.6 48 6-59 3-50 (403)
149 3llv_A Exopolyphosphatase-rela 34.8 1.3E+02 0.0046 22.0 7.2 51 10-70 6-57 (141)
150 1ydw_A AX110P-like protein; st 34.5 31 0.0011 30.5 3.9 50 7-63 3-53 (362)
151 3n8i_A Low molecular weight ph 34.3 38 0.0013 26.8 4.0 58 7-65 2-70 (157)
152 2w6k_A COBE; biosynthetic prot 34.3 62 0.0021 25.4 5.2 56 14-69 14-75 (145)
153 3e9m_A Oxidoreductase, GFO/IDH 34.0 32 0.0011 30.1 3.8 49 9-64 4-53 (330)
154 3e8m_A Acylneuraminate cytidyl 34.0 75 0.0026 24.0 5.6 44 42-87 49-92 (164)
155 2r8e_A 3-deoxy-D-manno-octulos 33.7 79 0.0027 24.8 5.9 44 42-87 71-114 (188)
156 3fwz_A Inner membrane protein 33.3 1.5E+02 0.005 22.0 7.2 50 11-70 8-58 (140)
157 2y1e_A 1-deoxy-D-xylulose 5-ph 33.2 50 0.0017 30.6 5.0 55 10-69 21-78 (398)
158 2fek_A Low molecular weight pr 32.8 47 0.0016 26.6 4.3 53 10-65 22-80 (167)
159 3mz0_A Inositol 2-dehydrogenas 31.9 54 0.0019 28.6 5.0 51 10-66 2-53 (344)
160 3n1u_A Hydrolase, HAD superfam 31.6 91 0.0031 24.7 6.0 43 42-86 64-106 (191)
161 2ozp_A N-acetyl-gamma-glutamyl 31.5 27 0.00092 31.3 2.9 37 7-49 1-39 (345)
162 1ycp_F Fibrinopeptide A-alpha; 31.2 16 0.00054 20.6 0.8 9 247-255 14-22 (26)
163 2nvw_A Galactose/lactose metab 30.4 36 0.0012 31.8 3.7 53 6-64 35-92 (479)
164 2izz_A Pyrroline-5-carboxylate 29.9 43 0.0015 29.3 3.9 54 5-64 17-73 (322)
165 3qy9_A DHPR, dihydrodipicolina 29.7 41 0.0014 28.7 3.6 32 10-48 3-35 (243)
166 1zzg_A Glucose-6-phosphate iso 29.7 37 0.0013 31.5 3.6 57 13-70 119-182 (415)
167 2q8n_A Glucose-6-phosphate iso 29.5 56 0.0019 30.8 4.8 60 10-70 139-205 (460)
168 3bio_A Oxidoreductase, GFO/IDH 28.8 43 0.0015 29.1 3.7 35 9-49 8-43 (304)
169 1jf8_A Arsenate reductase; ptp 28.1 61 0.0021 24.6 4.1 54 10-65 3-59 (131)
170 3ouz_A Biotin carboxylase; str 26.6 1.2E+02 0.0041 27.4 6.5 46 7-59 4-50 (446)
171 2wmy_A WZB, putative acid phos 26.5 70 0.0024 24.9 4.3 52 11-65 9-66 (150)
172 3au8_A 1-deoxy-D-xylulose 5-ph 26.2 78 0.0027 30.0 5.0 60 9-70 76-137 (488)
173 1xyg_A Putative N-acetyl-gamma 26.0 50 0.0017 29.7 3.7 38 5-48 11-50 (359)
174 3jvi_A Protein tyrosine phosph 25.8 63 0.0022 25.5 3.9 56 10-65 4-69 (161)
175 3mmz_A Putative HAD family hyd 25.4 1.2E+02 0.004 23.6 5.4 43 42-87 57-99 (176)
176 3ff1_A Glucose-6-phosphate iso 25.4 49 0.0017 31.1 3.6 58 12-70 135-200 (446)
177 3cea_A MYO-inositol 2-dehydrog 25.3 85 0.0029 27.2 5.0 53 8-66 6-59 (346)
178 3by5_A Cobalamin biosynthesis 24.9 53 0.0018 26.3 3.2 56 14-69 13-71 (155)
179 3btv_A Galactose/lactose metab 24.7 65 0.0022 29.5 4.3 50 9-64 19-73 (438)
180 2ep5_A 350AA long hypothetical 24.3 51 0.0017 29.5 3.4 34 7-46 1-36 (350)
181 2pbz_A Hypothetical protein; N 24.3 84 0.0029 27.9 4.8 54 197-261 216-270 (320)
182 3ih5_A Electron transfer flavo 24.3 1.4E+02 0.0048 24.7 5.9 89 10-120 3-100 (217)
183 1id1_A Putative potassium chan 23.9 1.5E+02 0.0051 22.2 5.7 53 10-69 3-57 (153)
184 3ijp_A DHPR, dihydrodipicolina 23.8 37 0.0013 29.9 2.3 41 3-49 14-56 (288)
185 2p9j_A Hypothetical protein AQ 23.7 1.9E+02 0.0066 21.5 6.3 43 42-86 54-96 (162)
186 1z2n_X Inositol 1,3,4-trisphos 23.6 72 0.0025 27.3 4.2 11 251-261 290-300 (324)
187 4gmk_A Ribose-5-phosphate isom 23.5 26 0.0009 30.0 1.2 52 15-71 24-77 (228)
188 1n2z_A Vitamin B12 transport p 23.3 48 0.0016 27.3 2.8 52 12-71 38-89 (245)
189 3kux_A Putative oxidoreductase 23.3 50 0.0017 29.1 3.1 19 5-23 2-21 (352)
190 3ia7_A CALG4; glycosysltransfe 22.8 78 0.0027 27.4 4.3 52 10-69 4-58 (402)
191 3out_A Glutamate racemase; str 22.4 38 0.0013 29.3 2.1 23 7-29 4-28 (268)
192 4e12_A Diketoreductase; oxidor 22.4 95 0.0033 26.3 4.7 22 7-28 1-23 (283)
193 2czc_A Glyceraldehyde-3-phosph 21.9 1.5E+02 0.005 26.1 5.9 50 10-66 2-52 (334)
194 4hn9_A Iron complex transport 21.8 70 0.0024 27.8 3.8 50 12-71 97-146 (335)
195 1kor_A Argininosuccinate synth 21.7 1.1E+02 0.0036 28.1 5.0 55 11-71 1-62 (400)
196 1evy_A Glycerol-3-phosphate de 21.6 31 0.0011 30.5 1.3 25 4-28 9-34 (366)
197 3m2t_A Probable dehydrogenase; 21.5 58 0.002 28.8 3.2 15 8-22 3-18 (359)
198 3ij5_A 3-deoxy-D-manno-octulos 21.4 1.3E+02 0.0045 24.4 5.2 44 42-87 94-137 (211)
199 3hbm_A UDP-sugar hydrolase; PS 20.9 2.8E+02 0.0095 23.8 7.4 50 11-70 1-55 (282)
200 2yxb_A Coenzyme B12-dependent 20.7 2E+02 0.007 22.4 6.0 71 10-86 18-93 (161)
201 1k1e_A Deoxy-D-mannose-octulos 20.6 1.8E+02 0.0062 22.4 5.7 43 42-86 53-95 (180)
202 1b0z_A Protein (phosphoglucose 20.5 68 0.0023 30.0 3.5 59 11-70 131-197 (445)
203 2vqe_L 30S ribosomal protein S 20.1 25 0.00084 27.6 0.3 24 2-25 55-78 (135)
No 1
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=100.00 E-value=3.3e-33 Score=242.79 Aligned_cols=177 Identities=25% Similarity=0.356 Sum_probs=145.0
Q ss_pred ccCCccEEEEEcCcchhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCH-HHHHHHHHH
Q psy13615 7 MVQRKRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLIL-SNSLQVMQK 85 (263)
Q Consensus 7 m~~~~riavl~SG~Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~-~~~~~i~~~ 85 (263)
|. ++||+||+||+||||++|+++ .+.+.++++|++|+||+++++++++|+++|||+++++++++.++ ++++++++.
T Consensus 5 m~-~~ri~vl~SG~gsnl~all~~--~~~~~l~~~I~~Visn~~~a~~l~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~ 81 (209)
T 4ds3_A 5 MK-RNRVVIFISGGGSNMEALIRA--AQAPGFPAEIVAVFSDKAEAGGLAKAEAAGIATQVFKRKDFASKEAHEDAILAA 81 (209)
T ss_dssp -C-CEEEEEEESSCCHHHHHHHHH--HTSTTCSEEEEEEEESCTTCTHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHH
T ss_pred CC-CccEEEEEECCcHHHHHHHHH--HHcCCCCcEEEEEEECCcccHHHHHHHHcCCCEEEeCccccCCHHHHHHHHHHH
Confidence 44 789999999999999999976 45567789999999999999999999999999999999888665 778888888
Q ss_pred hccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEE----ee--cCCcCCccccccCCcEEEEecC-CCCCccccce
Q psy13615 86 VGAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGA----VE--KASLLPKVKDVAAGDVVIALPS-SGIHSNGFSL 158 (263)
Q Consensus 86 l~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~----~~--~~~~in~hpsl~~g~~ii~Lp~-~G~~~~g~Sl 158 (263)
+ ++ +++|++++||||+.+ ++ +.+++|+|||+ ||+ .|.+..
T Consensus 82 l--~~-------------------~~~Dliv~agy~~il~~~~l~~~~~~~iNiHpSL--------LP~yrG~~pi---- 128 (209)
T 4ds3_A 82 L--DV-------------------LKPDIICLAGYMRLLSGRFIAPYEGRILNIHPSL--------LPLFPGLHTH---- 128 (209)
T ss_dssp H--HH-------------------HCCSEEEESSCCSCCCHHHHGGGTTCEEEEESSC--------TTSSCSSCHH----
T ss_pred H--Hh-------------------cCCCEEEEeccccCcCHHHHhhccCCeEEECCcc--------ccCCCChhHH----
Confidence 8 77 899999999999843 33 35799999999 998 565543
Q ss_pred eEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHH-------HHHHHHHHHHhcCC
Q psy13615 159 VLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDT-------ILMRVIKKMIAEGT 226 (263)
Q Consensus 159 ~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~-------il~~~i~~~~~eg~ 226 (263)
.|++.+| .+.+|+| .| ++|+|+|||+|++|..+|+.++|+.+++.+| +|+++++.+.+...
T Consensus 129 ~~Ai~~G--~~~tGvT-vh----~v~~~~D~G~Ii~Q~~v~I~~~dt~~~L~~r~~~~~~~ll~~~l~~~~~g~~ 196 (209)
T 4ds3_A 129 QRALDAG--MKLAGCT-VH----LVTEGMDEGPILAQAAVPVLDGDTAETLAARVLKAEHRLYPLALQKFAAGEK 196 (209)
T ss_dssp HHHHHTT--CSEEEEE-EE----ECCC--CCCCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHcC--CCeEEEE-EE----EEcCCCCCCCeEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3455554 5669999 47 9999999999999999999988888877765 58888988865443
No 2
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=99.98 E-value=5.5e-33 Score=241.57 Aligned_cols=173 Identities=22% Similarity=0.309 Sum_probs=145.4
Q ss_pred CccEEEEEcCcchhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCH-HHHHHHHHHhcc
Q psy13615 10 RKRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLIL-SNSLQVMQKVGA 88 (263)
Q Consensus 10 ~~riavl~SG~Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~-~~~~~i~~~l~~ 88 (263)
|+||+||+||+||||++|+++ ++.+.++++|++|+||+++++++++|+++|||+++++++++.++ +++.++++.+
T Consensus 2 m~riavl~Sg~Gsnl~ali~~--~~~~~l~~eI~~Visn~~~a~v~~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l-- 77 (211)
T 3p9x_A 2 MKRVAIFASGSGTNAEAIIQS--QKAGQLPCEVALLITDKPGAKVVERVKVHEIPVCALDPKTYPSKEAYEIEVVQQL-- 77 (211)
T ss_dssp -CEEEEECCTTCHHHHHHHHH--HHTTCCSSEEEEEEESCSSSHHHHHHHTTTCCEEECCGGGSSSHHHHHHHHHHHH--
T ss_pred CCEEEEEEeCCchHHHHHHHH--HHcCCCCcEEEEEEECCCCcHHHHHHHHcCCCEEEeChhhcCchhhhHHHHHHHH--
Confidence 469999999999999999976 46677889999999999999999999999999999998887665 7788888888
Q ss_pred ccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEE----ee--cCCcCCccccccCCcEEEEecC-CCCCccccceeEE
Q psy13615 89 KYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGA----VE--KASLLPKVKDVAAGDVVIALPS-SGIHSNGFSLVLC 161 (263)
Q Consensus 89 ~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~----~~--~~~~in~hpsl~~g~~ii~Lp~-~G~~~~g~Sl~~a 161 (263)
++ +++|++++||||+.+ ++ +.+++|+|||+ ||+ .|.+.. .|+
T Consensus 78 ~~-------------------~~~Dliv~agy~~Il~~~~l~~~~~~~iNiHpSL--------LP~yrG~~pi----~~A 126 (211)
T 3p9x_A 78 KE-------------------KQIDFVVLAGYMRLVGPTLLGAYEGRIVNIHPSL--------LPAFPGLHAI----EQA 126 (211)
T ss_dssp HH-------------------TTCCEEEESSCCSCCCHHHHHHHTTSEEEEESSC--------TTSSCSSCHH----HHH
T ss_pred Hh-------------------cCCCEEEEeCchhhcCHHHHhhccCCeEEECCcc--------CCCCCCccHH----HHH
Confidence 77 899999999999843 22 45699999999 998 555443 345
Q ss_pred EecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHH-------HHHHHHHHHHhc
Q psy13615 162 FTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDT-------ILMRVIKKMIAE 224 (263)
Q Consensus 162 i~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~-------il~~~i~~~~~e 224 (263)
+.+| .+.+|+| .| ++|+|.|||+|++|..+|+.++|+.+++.+| +|+++++.+.+.
T Consensus 127 i~~G--~~~tGvT-vh----~v~~~~D~G~Ii~Q~~v~I~~~dt~~~L~~rl~~~~~~ll~~~l~~l~~g 189 (211)
T 3p9x_A 127 IRAN--VKVTGVT-IH----YVDEGMDTGPIIAQEAVSIEEEDTLETLTTKIQAVEHRLYPATLHKLLSK 189 (211)
T ss_dssp HHTT--CSEEEEE-EE----ECCSSSSCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHcC--CCeEEEE-EE----EEcCCCCCCCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 5555 5669999 47 9999999999999999999988888887765 588888888543
No 3
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=99.97 E-value=1.4e-32 Score=239.79 Aligned_cols=175 Identities=23% Similarity=0.299 Sum_probs=145.7
Q ss_pred CccEEEEEcCcchhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCH-HHHHHHHHHhcc
Q psy13615 10 RKRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLIL-SNSLQVMQKVGA 88 (263)
Q Consensus 10 ~~riavl~SG~Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~-~~~~~i~~~l~~ 88 (263)
++||+||+||+||||++|+++ ++.+ ++++|++|+||+++++++++|+++|||+++++++++.++ ++++++++.+
T Consensus 5 ~~riavl~SG~Gsnl~all~~--~~~~-~~~eI~~Vis~~~~a~~~~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l-- 79 (215)
T 3tqr_A 5 PLPIVVLISGNGTNLQAIIGA--IQKG-LAIEIRAVISNRADAYGLKRAQQADIPTHIIPHEEFPSRTDFESTLQKTI-- 79 (215)
T ss_dssp CEEEEEEESSCCHHHHHHHHH--HHTT-CSEEEEEEEESCTTCHHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHH--
T ss_pred CcEEEEEEeCCcHHHHHHHHH--HHcC-CCCEEEEEEeCCcchHHHHHHHHcCCCEEEeCccccCchhHhHHHHHHHH--
Confidence 568999999999999999976 4556 789999999999999999999999999999999888766 7788888888
Q ss_pred ccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEE----ee--cCCcCCccccccCCcEEEEecC-CCCCccccceeEE
Q psy13615 89 KYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGA----VE--KASLLPKVKDVAAGDVVIALPS-SGIHSNGFSLVLC 161 (263)
Q Consensus 89 ~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~----~~--~~~~in~hpsl~~g~~ii~Lp~-~G~~~~g~Sl~~a 161 (263)
++ +++|++++||||+.+ ++ +.+++|+|||+ ||+ .|.+.. .|+
T Consensus 80 ~~-------------------~~~Dliv~agy~~il~~~~l~~~~~~~iNiHpSL--------LP~yrG~~pi----~~A 128 (215)
T 3tqr_A 80 DH-------------------YDPKLIVLAGFMRKLGKAFVSHYSGRMINIHPSL--------LPKYTGLNTH----ERA 128 (215)
T ss_dssp HT-------------------TCCSEEEESSCCSCCCHHHHHHTTTSEEEEESSS--------TTTTCSSCHH----HHH
T ss_pred Hh-------------------cCCCEEEEccchhhCCHHHHhhccCCeEEeCccc--------CCCCCChhHH----HHH
Confidence 77 999999999999843 22 35799999999 998 555543 345
Q ss_pred EecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHH-------HHHHHHHHHHhcCCC
Q psy13615 162 FTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDT-------ILMRVIKKMIAEGTP 227 (263)
Q Consensus 162 i~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~-------il~~~i~~~~~eg~~ 227 (263)
+.+| .+.+|+| .| ++|+|.|||+|++|..+|+.++|+.+++.+| +|+++++.+.+....
T Consensus 129 i~~G--~~~tGvT-vh----~v~~~~D~G~Ii~Q~~v~I~~~dt~~~L~~rl~~~~~~ll~~~l~~~~~g~~~ 194 (215)
T 3tqr_A 129 LAAG--ETEHGVS-VH----YVTEDLDAGPLICQARLSITPQDTPETLKTRVHALEHIIYPEVLSWFAAGRLN 194 (215)
T ss_dssp HHTT--CSEEEEE-EE----ECC-CTTCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHcC--CCeEEEE-EE----EEcCCCCCCCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCeE
Confidence 5555 5669999 47 9999999999999999999988888887765 588999998655443
No 4
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=99.97 E-value=6.2e-32 Score=235.66 Aligned_cols=173 Identities=26% Similarity=0.311 Sum_probs=141.0
Q ss_pred ccCCccEEEEEcCcchhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCHHHHHHHHHHh
Q psy13615 7 MVQRKRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLILSNSLQVMQKV 86 (263)
Q Consensus 7 m~~~~riavl~SG~Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~~~~~~i~~~l 86 (263)
|..++||+||+||+|||+++|+++ .+.+.++++|++|+||+++++++++|+++|||+++++++++.+ +++++.+
T Consensus 5 ~~~~~ri~vl~SG~gsnl~all~~--~~~~~~~~~I~~Vis~~~~a~~l~~A~~~gIp~~~~~~~~~~~----~~~~~~L 78 (215)
T 3kcq_A 5 MKKELRVGVLISGRGSNLEALAKA--FSTEESSVVISCVISNNAEARGLLIAQSYGIPTFVVKRKPLDI----EHISTVL 78 (215)
T ss_dssp --CCEEEEEEESSCCHHHHHHHHH--TCCC-CSEEEEEEEESCTTCTHHHHHHHTTCCEEECCBTTBCH----HHHHHHH
T ss_pred CCCCCEEEEEEECCcHHHHHHHHH--HHcCCCCcEEEEEEeCCcchHHHHHHHHcCCCEEEeCcccCCh----HHHHHHH
Confidence 667889999999999999999976 4556778999999999999999999999999999998876643 4556666
Q ss_pred ccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEE----ee--cCCcCCccccccCCcEEEEecC-CCCCcccccee
Q psy13615 87 GAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGA----VE--KASLLPKVKDVAAGDVVIALPS-SGIHSNGFSLV 159 (263)
Q Consensus 87 ~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~----~~--~~~~in~hpsl~~g~~ii~Lp~-~G~~~~g~Sl~ 159 (263)
++ +++|++++||||+.+ ++ +.+++|+|||+ ||+ .|.+.. +
T Consensus 79 --~~-------------------~~~Dlivlagy~~IL~~~~l~~~~~~~iNiHpSL--------LP~yrG~~pi----~ 125 (215)
T 3kcq_A 79 --RE-------------------HDVDLVCLAGFMSILPEKFVTDWHHKIINIHPSL--------LPSFKGLNAQ----E 125 (215)
T ss_dssp --HH-------------------TTCSEEEESSCCSCCCHHHHHHTTTSEEEEESSC--------TTTTCSSCHH----H
T ss_pred --HH-------------------hCCCEEEEeCCceEeCHHHHhhccCCeEEECccc--------ccCCCCccHH----H
Confidence 66 899999999999843 22 35799999999 998 565543 3
Q ss_pred EEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHH-------HHHHHHHHHHhcC
Q psy13615 160 LCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDT-------ILMRVIKKMIAEG 225 (263)
Q Consensus 160 ~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~-------il~~~i~~~~~eg 225 (263)
|++.+| ++.+|+| .| ++|+|.|||+|++|..+|+.++|+.+++.+| +|+++++.+.+..
T Consensus 126 ~Ai~~G--~~~tGvT-vh----~v~~~lD~G~Ii~Q~~v~I~~~dt~~~L~~rl~~~e~~ll~~~l~~~~~g~ 191 (215)
T 3kcq_A 126 QAYKAG--VKIAGCT-LH----YVYQELDAGPIIMQAAVPVLREDTAESLASRILAAEHVCYPKGVKLIAQDK 191 (215)
T ss_dssp HHHHHT--CSEEEEE-EE----ECCSSTTCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHcC--CCeEEEE-EE----EEcCCCCCCCEEEEEEeecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 455555 5679999 47 9999999999999999999988888877665 5888999986543
No 5
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=99.97 E-value=2.5e-31 Score=231.86 Aligned_cols=174 Identities=25% Similarity=0.324 Sum_probs=144.4
Q ss_pred CccEEEEEcCcchhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCH-HHHHHHHHHhcc
Q psy13615 10 RKRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLIL-SNSLQVMQKVGA 88 (263)
Q Consensus 10 ~~riavl~SG~Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~-~~~~~i~~~l~~ 88 (263)
++||+||+||+||||++|+++ .+. .++++|++|+||++ ++++++|+++|||++.++++++.++ ++++++++.+
T Consensus 12 ~~ri~vl~SG~gsnl~all~~--~~~-~~~~eI~~Vis~~~-a~~~~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l-- 85 (215)
T 3da8_A 12 PARLVVLASGTGSLLRSLLDA--AVG-DYPARVVAVGVDRE-CRAAEIAAEASVPVFTVRLADHPSRDAWDVAITAAT-- 85 (215)
T ss_dssp SEEEEEEESSCCHHHHHHHHH--SST-TCSEEEEEEEESSC-CHHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHH--
T ss_pred CcEEEEEEeCChHHHHHHHHH--Hhc-cCCCeEEEEEeCCc-hHHHHHHHHcCCCEEEeCcccccchhhhhHHHHHHH--
Confidence 569999999999999999976 332 56789999999986 9999999999999999988777666 7788888888
Q ss_pred ccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEE----ee--cCCcCCccccccCCcEEEEecC-CCCCccccceeEE
Q psy13615 89 KYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGA----VE--KASLLPKVKDVAAGDVVIALPS-SGIHSNGFSLVLC 161 (263)
Q Consensus 89 ~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~----~~--~~~~in~hpsl~~g~~ii~Lp~-~G~~~~g~Sl~~a 161 (263)
++ +++|++++||||+.+ ++ +.+++|+|||+ ||+ .|.+.. +|+
T Consensus 86 ~~-------------------~~~Dlivlagy~~iL~~~~l~~~~~~~iNiHpSL--------LP~yrG~~pi----~~A 134 (215)
T 3da8_A 86 AA-------------------HEPDLVVSAGFMRILGPQFLSRFYGRTLNTHPAL--------LPAFPGTHGV----ADA 134 (215)
T ss_dssp HT-------------------TCCSEEEEEECCSCCCHHHHHHHTTTEEEEESSC--------TTSSCSTTHH----HHH
T ss_pred Hh-------------------hCCCEEEEcCchhhCCHHHHhhccCCeEEeCccc--------ccCCCCchHH----HHH
Confidence 77 999999999999843 22 45799999999 998 565543 345
Q ss_pred EecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHH-------HHHHHHHHHHhcCCC
Q psy13615 162 FTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDT-------ILMRVIKKMIAEGTP 227 (263)
Q Consensus 162 i~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~-------il~~~i~~~~~eg~~ 227 (263)
+.+| .+.+|+| .| ++|+|+|||+|++|..+|+.++|+.+++.+| +|+++++.+.+....
T Consensus 135 i~~G--~~~tGvT-vh----~v~~~lD~G~Ii~Q~~v~I~~~dt~~~L~~rl~~~~~~ll~~~l~~~~~g~~~ 200 (215)
T 3da8_A 135 LAYG--VKVTGAT-VH----LVDAGTDTGPILAQQPVPVLDGDDEETLHERIKVTERRLLVAAVAALATHGVT 200 (215)
T ss_dssp HHHT--CSEEEEE-EE----ECCSSSSCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHCEE
T ss_pred HHcC--CCeEEEE-EE----EEcCCCCCCCEEEEEEeecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcE
Confidence 5555 6669999 47 9999999999999999999988888877765 588899998765543
No 6
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=99.97 E-value=9.4e-31 Score=238.64 Aligned_cols=180 Identities=17% Similarity=0.146 Sum_probs=146.4
Q ss_pred eeeecc-CCccEEEEEcCcchhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCHHHHHH
Q psy13615 3 VKTRMV-QRKRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLILSNSLQ 81 (263)
Q Consensus 3 ~~~~m~-~~~riavl~SG~Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~~~~~~ 81 (263)
++.+-. .++||+||+||+||||++|+++ ++.+.++++|++|+||+++++. +|+++|||+++++.....+.+++++
T Consensus 97 ~~l~~~~~~~ri~vl~Sg~g~nl~~ll~~--~~~g~l~~~I~~Visn~~~~~~--~A~~~gIp~~~~~~~~~~r~~~~~~ 172 (302)
T 3o1l_A 97 WRITDSAQKKRVVLMASRESHCLADLLHR--WHSDELDCDIACVISNHQDLRS--MVEWHDIPYYHVPVDPKDKEPAFAE 172 (302)
T ss_dssp EEEEETTSCCEEEEEECSCCHHHHHHHHH--HHTTCSCSEEEEEEESSSTTHH--HHHTTTCCEEECCCCSSCCHHHHHH
T ss_pred eeecccCCCcEEEEEEeCCchhHHHHHHH--HHCCCCCcEEEEEEECcHHHHH--HHHHcCCCEEEcCCCcCCHHHHHHH
Confidence 444433 4779999999999999999966 5678889999999999999874 6999999999997655445577888
Q ss_pred HHHHhccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEEe----e--cCCcCCccccccCCcEEEEecC-CCCCcc
Q psy13615 82 VMQKVGAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAV----E--KASLLPKVKDVAAGDVVIALPS-SGIHSN 154 (263)
Q Consensus 82 i~~~l~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~~----~--~~~~in~hpsl~~g~~ii~Lp~-~G~~~~ 154 (263)
+++.+ ++ +++|+++|||||+.+. + +.++||+|||+ ||+ .|.+..
T Consensus 173 ~~~~l--~~-------------------~~~DliVlagym~IL~~~~l~~~~~~~INiHpSl--------LP~frG~~p~ 223 (302)
T 3o1l_A 173 VSRLV--GH-------------------HQADVVVLARYMQILPPQLCREYAHQVINIHHSF--------LPSFVGAKPY 223 (302)
T ss_dssp HHHHH--HH-------------------TTCSEEEESSCCSCCCTTHHHHTTTCEEEEESSC--------TTSSCSSCHH
T ss_pred HHHHH--HH-------------------hCCCEEEHhHhhhhcCHHHHhhhhCCeEEeCccc--------ccCCCCccHH
Confidence 88888 77 9999999999998432 2 35799999999 998 565544
Q ss_pred ccceeEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHH-------HHHHHHHHHHhcCC
Q psy13615 155 GFSLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDT-------ILMRVIKKMIAEGT 226 (263)
Q Consensus 155 g~Sl~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~-------il~~~i~~~~~eg~ 226 (263)
+|++. +|++.+|+| .| ++++++|||+|++|..+|+.++|+.+++.++ +|+++++++.+...
T Consensus 224 ----~~Ai~--~G~k~tG~T-vH----~v~~~lD~GpII~Q~~v~I~~~dt~~~L~~r~~~~e~~~l~~av~~~~~~~v 291 (302)
T 3o1l_A 224 ----HQASL--RGVKLIGAT-CH----YVTEELDAGPIIEQDVVRVSHRDSIENMVRFGRDVEKMVLARGLRAHLEDRV 291 (302)
T ss_dssp ----HHHHH--HTCSEEEEE-EE----ECCSSTTCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred ----HHHHH--cCCCeEEEE-EE----EECCCCcCCCeEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCE
Confidence 34444 457779999 47 9999999999999999999888888876654 68999999976554
No 7
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=99.97 E-value=1.1e-30 Score=227.48 Aligned_cols=173 Identities=24% Similarity=0.326 Sum_probs=145.1
Q ss_pred ccEEEEEcCcchhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCH-HHHHHHHHHhccc
Q psy13615 11 KRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLIL-SNSLQVMQKVGAK 89 (263)
Q Consensus 11 ~riavl~SG~Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~-~~~~~i~~~l~~~ 89 (263)
+||+||+||+||||++|+++ .+.+.++++|++|+||+++++++++|+++|||++.+++.++.++ ++++++++.+ +
T Consensus 1 ~ri~vl~Sg~gsnl~ali~~--~~~~~~~~~i~~Vis~~~~~~~~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l--~ 76 (212)
T 1jkx_A 1 MNIVVLISGNGSNLQAIIDA--CKTNKIKGTVRAVFSNKADAFGLERARQAGIATHTLIASAFDSREAYDRELIHEI--D 76 (212)
T ss_dssp CEEEEEESSCCHHHHHHHHH--HHTTSSSSEEEEEEESCTTCHHHHHHHHTTCEEEECCGGGCSSHHHHHHHHHHHH--G
T ss_pred CEEEEEEECCcHHHHHHHHH--HHcCCCCceEEEEEeCCCchHHHHHHHHcCCcEEEeCcccccchhhccHHHHHHH--H
Confidence 48999999999999999976 45567788999999999999999999999999999988877665 7788888888 7
Q ss_pred cCCCCceeeeccccccCCCCcCCCcEEEeeeeeEE----ee--cCCcCCccccccCCcEEEEecC-CCCCccccceeEEE
Q psy13615 90 YSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGA----VE--KASLLPKVKDVAAGDVVIALPS-SGIHSNGFSLVLCF 162 (263)
Q Consensus 90 ~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~----~~--~~~~in~hpsl~~g~~ii~Lp~-~G~~~~g~Sl~~ai 162 (263)
+ +++|++++||||+.+ ++ +.+++|+|||+ ||+ .|.+.. .|++
T Consensus 77 ~-------------------~~~Dliv~agy~~il~~~~l~~~~~~~iNiHpSl--------LP~yrG~~pi----~~ai 125 (212)
T 1jkx_A 77 M-------------------YAPDVVVLAGFMRILSPAFVSHYAGRLLNIHPSL--------LPKYPGLHTH----RQAL 125 (212)
T ss_dssp G-------------------GCCSEEEESSCCSCCCHHHHHHTTTSEEEEESSC--------TTSCCSSCHH----HHHH
T ss_pred h-------------------cCCCEEEEeChhhhCCHHHHhhccCCEEEEccCc--------ccCCCCccHH----HHHH
Confidence 7 999999999999843 22 35799999999 998 554433 4455
Q ss_pred ecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHH-------HHHHHHHHHHhcC
Q psy13615 163 TDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDT-------ILMRVIKKMIAEG 225 (263)
Q Consensus 163 ~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~-------il~~~i~~~~~eg 225 (263)
.+| .+.+|+| .| ++|+|.|||+|.+|..+|+.++|+.+++.+| +++++++.+.+..
T Consensus 126 ~~G--~~~tGvT-vh----~v~~~~D~G~Ii~Q~~v~I~~~dt~~~L~~rl~~~~~~ll~~~l~~~~~g~ 188 (212)
T 1jkx_A 126 ENG--DEEHGTS-VH----FVTDELDGGPVILQAKVPVFAGDSEDDITARVQTQEHAIYPLVISWFADGR 188 (212)
T ss_dssp HTT--CSEEEEE-EE----ECCSSTTCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HcC--CCceEEE-EE----EEcccccCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 655 5568999 47 9999999999999999999999888887765 5889999886544
No 8
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=99.97 E-value=2.7e-31 Score=240.89 Aligned_cols=175 Identities=18% Similarity=0.187 Sum_probs=143.7
Q ss_pred CCccEEEEEcCcchhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCHHHHHHHHHHhcc
Q psy13615 9 QRKRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLILSNSLQVMQKVGA 88 (263)
Q Consensus 9 ~~~riavl~SG~Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~~~~~~i~~~l~~ 88 (263)
.++||+||+||+||||++|+++ ++.+.++++|++|+||++++ +.++|+++|||++++++....+.++++++++.+
T Consensus 87 ~~~ri~vl~Sg~g~nl~~ll~~--~~~g~l~~~i~~Visn~~~a-~~~~A~~~gIp~~~~~~~~~~r~~~~~~~~~~l-- 161 (287)
T 3nrb_A 87 DRKKVVIMVSKFDHCLGDLLYR--HRLGELDMEVVGIISNHPRE-ALSVSLVGDIPFHYLPVTPATKAAQESQIKNIV-- 161 (287)
T ss_dssp CCCEEEEEECSCCHHHHHHHHH--HHHTSSCCEEEEEEESSCGG-GCCCCCCTTSCEEECCCCGGGHHHHHHHHHHHH--
T ss_pred CCcEEEEEEeCCCcCHHHHHHH--HHCCCCCeEEEEEEeCChHH-HHHHHHHcCCCEEEEeccCcchhhHHHHHHHHH--
Confidence 4779999999999999999966 56688899999999999986 678899999999999765422336778888888
Q ss_pred ccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEE----ee--cCCcCCccccccCCcEEEEecC-CCCCccccceeEE
Q psy13615 89 KYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGA----VE--KASLLPKVKDVAAGDVVIALPS-SGIHSNGFSLVLC 161 (263)
Q Consensus 89 ~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~----~~--~~~~in~hpsl~~g~~ii~Lp~-~G~~~~g~Sl~~a 161 (263)
++ +++|+++|||||+.+ ++ +.++||+|||+ ||+ .|.+.+ +|+
T Consensus 162 ~~-------------------~~~Dlivlagym~il~~~~l~~~~~~~iNiHpSl--------LP~~rG~~p~----~~A 210 (287)
T 3nrb_A 162 TQ-------------------SQADLIVLARYMQILSDDLSAFLSGRCINIHHSF--------LPGFKGAKPY----HQA 210 (287)
T ss_dssp HH-------------------HTCSEEEESSCCSCCCHHHHHHHTTSEEEEESSC--------TTTTCSSCHH----HHH
T ss_pred HH-------------------hCCCEEEhhhhhhhcCHHHHhhccCCeEEECccc--------ccCCCCchHH----HHH
Confidence 77 899999999999843 22 46899999999 998 565544 344
Q ss_pred EecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHH-------HHHHHHHHHHhcCC
Q psy13615 162 FTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDT-------ILMRVIKKMIAEGT 226 (263)
Q Consensus 162 i~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~-------il~~~i~~~~~eg~ 226 (263)
+. +|++.+|+| .| +++++.|+|+|+.|..+|+.++|+.+++.++ +|+++++++.+...
T Consensus 211 i~--~G~k~tG~T-vh----~v~~~lD~GpIi~Q~~v~i~~~dt~~~L~~r~~~~e~~~l~~av~~~~~~~~ 275 (287)
T 3nrb_A 211 HT--RGVKLIGAT-AH----FVTADLDEGPIIAQDVEHVSHRDSAEDLVRKGRDIERRVLSRAVLLFLEDRL 275 (287)
T ss_dssp HH--HTCSEEEEE-EE----ECCSSSSCCCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred HH--cCCCeEEEE-EE----EECCCCcCCCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCE
Confidence 44 457779999 47 9999999999999999999888888876654 68999999876543
No 9
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=99.97 E-value=1e-30 Score=227.13 Aligned_cols=173 Identities=27% Similarity=0.318 Sum_probs=141.4
Q ss_pred ccEEEEEcCcchhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCH-HHHHHHHHHhccc
Q psy13615 11 KRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLIL-SNSLQVMQKVGAK 89 (263)
Q Consensus 11 ~riavl~SG~Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~-~~~~~i~~~l~~~ 89 (263)
+||+||+||+||||++|+++ .+.+.++++|++|+||++++.++++|+++|||++++++.++.++ ++++++++.+ +
T Consensus 1 ~riaVl~SG~Gs~L~aLi~~--~~~~~~~~~I~~Vvs~~~~~~~~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l--~ 76 (209)
T 1meo_A 1 ARVAVLISGTGSNLQALIDS--TREPNSSAQIDIVISNKAAVAGLDKAERAGIPTRVINHKLYKNRVEFDSAIDLVL--E 76 (209)
T ss_dssp CEEEEEESSSCTTHHHHHHH--HHSTTCSCEEEEEEESSTTCHHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHH--H
T ss_pred CeEEEEEECCchHHHHHHHH--HhcCCCCcEEEEEEeCCCChHHHHHHHHcCCCEEEECccccCchhhhhHHHHHHH--H
Confidence 48999999999999999976 45566778999999999999999999999999999998877665 6777888877 6
Q ss_pred cCCCCceeeeccccccCCCCcCCCcEEEeeeeeEE----ee--cCCcCCccccccCCcEEEEecC-CCCCccccceeEEE
Q psy13615 90 YSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGA----VE--KASLLPKVKDVAAGDVVIALPS-SGIHSNGFSLVLCF 162 (263)
Q Consensus 90 ~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~----~~--~~~~in~hpsl~~g~~ii~Lp~-~G~~~~g~Sl~~ai 162 (263)
+ +++|++++||||+.+ ++ +.+++|+|||+ ||+ .|.+.. .|++
T Consensus 77 ~-------------------~~~Dliv~a~y~~il~~~~l~~~~~~~iNiHpSL--------LP~yrG~~pi----~~Ai 125 (209)
T 1meo_A 77 E-------------------FSIDIVCLAGFMRILSGPFVQKWNGKMLNIHPSL--------LPSFKGSNAH----EQAL 125 (209)
T ss_dssp H-------------------TTCCEEEEESCCSCCCHHHHHHTTTSEEEEESSS--------TTSSCSSCHH----HHHH
T ss_pred h-------------------cCCCEEEEcchhhhCCHHHHhhhcCCEEEEccCc--------CcCCCCccHH----HHHH
Confidence 7 899999999999843 22 35799999999 998 554433 4455
Q ss_pred ecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHH-------HHHHHHHHHHhcC
Q psy13615 163 TDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDT-------ILMRVIKKMIAEG 225 (263)
Q Consensus 163 ~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~-------il~~~i~~~~~eg 225 (263)
.+| .+.+|+| .| ++|+|.|||+|++|..+|+.++|+.+++.+| +++++++.+.+..
T Consensus 126 ~~G--~~~tGvT-vh----~v~~~~D~G~Ii~Q~~v~I~~~dt~~~L~~rl~~~~~~ll~~~l~~~~~g~ 188 (209)
T 1meo_A 126 ETG--VTVTGCT-VH----FVAEDVDAGQIILQEAVPVKRGDTVATLSERVKLAEHKIFPAALQLVASGT 188 (209)
T ss_dssp HHT--CSEEEEE-EE----ECCC---CCCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HcC--CCcEEEE-EE----EECCCCcCCCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 655 5669999 47 9999999999999999999999888887766 5888898886543
No 10
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=99.96 E-value=1.3e-30 Score=236.24 Aligned_cols=180 Identities=18% Similarity=0.165 Sum_probs=144.9
Q ss_pred eeeeccC-CccEEEEEcCcchhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCHHHHHH
Q psy13615 3 VKTRMVQ-RKRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLILSNSLQ 81 (263)
Q Consensus 3 ~~~~m~~-~~riavl~SG~Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~~~~~~ 81 (263)
++.+... ++||+||+||+||||++|+++ ++.+.++++|++|+||+++++++ |+++|||+++++....++.+++++
T Consensus 82 ~~l~~~~~~~ri~vl~Sg~g~~l~~ll~~--~~~g~l~~~i~~Visn~~~~~~~--A~~~gIp~~~~~~~~~~r~~~~~~ 157 (286)
T 3n0v_A 82 FELTAPNHRPKVVIMVSKADHCLNDLLYR--QRIGQLGMDVVAVVSNHPDLEPL--AHWHKIPYYHFALDPKDKPGQERK 157 (286)
T ss_dssp EEEECTTCCCEEEEEESSCCHHHHHHHHH--HHTTSSCCEEEEEEESSSTTHHH--HHHTTCCEEECCCBTTBHHHHHHH
T ss_pred EEeecCCCCcEEEEEEeCCCCCHHHHHHH--HHCCCCCcEEEEEEeCcHHHHHH--HHHcCCCEEEeCCCcCCHHHHHHH
Confidence 3444333 679999999999999999966 56678899999999999999865 999999999987654223367788
Q ss_pred HHHHhccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEE----ee--cCCcCCccccccCCcEEEEecC-CCCCcc
Q psy13615 82 VMQKVGAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGA----VE--KASLLPKVKDVAAGDVVIALPS-SGIHSN 154 (263)
Q Consensus 82 i~~~l~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~----~~--~~~~in~hpsl~~g~~ii~Lp~-~G~~~~ 154 (263)
+++.+ ++ +++|+++|||||+.+ ++ +.++||+|||+ ||+ .|.+..
T Consensus 158 ~~~~l--~~-------------------~~~Dlivla~y~~il~~~~l~~~~~~~iNiHpSl--------LP~~rG~~p~ 208 (286)
T 3n0v_A 158 VLQVI--EE-------------------TGAELVILARYMQVLSPELCRRLDGWAINIHHSL--------LPGFKGAKPY 208 (286)
T ss_dssp HHHHH--HH-------------------HTCSEEEESSCCSCCCHHHHHHTTTSEEEEEECS--------STTCCCSCHH
T ss_pred HHHHH--Hh-------------------cCCCEEEecccccccCHHHHhhhcCCeEEecccc--------ccCCCCccHH
Confidence 88888 77 899999999999843 22 45799999999 998 565544
Q ss_pred ccceeEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHH-------HHHHHHHHHHhcCC
Q psy13615 155 GFSLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDT-------ILMRVIKKMIAEGT 226 (263)
Q Consensus 155 g~Sl~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~-------il~~~i~~~~~eg~ 226 (263)
+|++.+ |++.+|+| .| +++++.|+|+|+.|..+|+.++|+.+++.++ +|+++++++.+...
T Consensus 209 ----~~Ai~~--G~~~~G~T-vh----~v~~~lD~GpIi~Q~~~~i~~~dt~~~L~~r~~~~e~~~l~~av~~~~~~~~ 276 (286)
T 3n0v_A 209 ----HQAYNK--GVKMVGAT-AH----YINNDLDEGPIIAQGVEVVDHSHYPEDLIAKGRDIECLTLARAVGYHIERRV 276 (286)
T ss_dssp ----HHHHHH--TCSEEEEE-EE----ECCSSTTCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred ----HHHHHc--CCCeEEEE-EE----EEcCCCCCCceeEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCE
Confidence 345454 46779999 47 9999999999999999999888888876654 68999999876543
No 11
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=99.96 E-value=1.6e-30 Score=236.28 Aligned_cols=174 Identities=17% Similarity=0.161 Sum_probs=143.0
Q ss_pred CCccEEEEEcCcchhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCHHHHHHHHHHhcc
Q psy13615 9 QRKRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLILSNSLQVMQKVGA 88 (263)
Q Consensus 9 ~~~riavl~SG~Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~~~~~~i~~~l~~ 88 (263)
.++||+||+||+||||++|+++ ++.+.++++|++|+||+++++++ |+++|||+++++.....+.++++++++.+
T Consensus 94 ~~~ri~vl~Sg~g~~l~~ll~~--~~~g~l~~~i~~Visn~~~~~~~--A~~~gIp~~~~~~~~~~r~~~~~~~~~~l-- 167 (292)
T 3lou_A 94 ARPKVLIMVSKLEHCLADLLFR--WKMGELKMDIVGIVSNHPDFAPL--AAQHGLPFRHFPITADTKAQQEAQWLDVF-- 167 (292)
T ss_dssp SCCEEEEEECSCCHHHHHHHHH--HHHTSSCCEEEEEEESSSTTHHH--HHHTTCCEEECCCCSSCHHHHHHHHHHHH--
T ss_pred CCCEEEEEEcCCCcCHHHHHHH--HHcCCCCcEEEEEEeCcHHHHHH--HHHcCCCEEEeCCCcCCHHHHHHHHHHHH--
Confidence 3679999999999999999966 56688899999999999999865 99999999998765423336778888888
Q ss_pred ccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEE----ee--cCCcCCccccccCCcEEEEecC-CCCCccccceeEE
Q psy13615 89 KYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGA----VE--KASLLPKVKDVAAGDVVIALPS-SGIHSNGFSLVLC 161 (263)
Q Consensus 89 ~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~----~~--~~~~in~hpsl~~g~~ii~Lp~-~G~~~~g~Sl~~a 161 (263)
++ +++|+++|||||+.+ ++ +.++||+|||+ ||+ .|.+.+ +|+
T Consensus 168 ~~-------------------~~~Dlivla~y~~il~~~~l~~~~~~~iNiHpSl--------LP~~rG~~p~----~~A 216 (292)
T 3lou_A 168 ET-------------------SGAELVILARYMQVLSPEASARLANRAINIHHSF--------LPGFKGAKPY----HQA 216 (292)
T ss_dssp HH-------------------HTCSEEEESSCCSCCCHHHHHHTTTSEEEEEEEC--------SSCCCSSCHH----HHH
T ss_pred HH-------------------hCCCEEEecCchhhCCHHHHhhhcCCeEEeCCCc--------CcCCCCccHH----HHH
Confidence 77 899999999999843 22 45799999999 998 565544 345
Q ss_pred EecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHH-------HHHHHHHHHHhcCC
Q psy13615 162 FTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDT-------ILMRVIKKMIAEGT 226 (263)
Q Consensus 162 i~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~-------il~~~i~~~~~eg~ 226 (263)
+.+ |++.+|+| .| +++++.|+|+|+.|..+|+.++|+.+++.++ +|+++++++.+...
T Consensus 217 i~~--G~~~~G~T-vh----~v~~~lD~G~Ii~Q~~v~i~~~dt~~~L~~r~~~~e~~~l~~av~~~~~~~~ 281 (292)
T 3lou_A 217 HAR--GVKLIGAT-AH----FVTDDLDEGPIIEQVVERVDHSYRPEQLLAVGRDVECITLARAVKAFIERRV 281 (292)
T ss_dssp HHH--TCSEEEEE-EE----ECCSSTTCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred HHc--CCCeEEEE-EE----EEcCCCcCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCE
Confidence 454 46779999 47 9999999999999999999888888876654 68999999976544
No 12
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=99.96 E-value=1.6e-30 Score=235.87 Aligned_cols=174 Identities=14% Similarity=0.113 Sum_probs=142.2
Q ss_pred CCccEEEEEcCcchhHHHHHHHhccccCCCCceEEEEEecC-CCChhhHHHHHcCCCEEEeeCCCCCCHHHHHHHHHHhc
Q psy13615 9 QRKRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNK-HNVEGLNIARNAGIPTKVSTYKHTLILSNSLQVMQKVG 87 (263)
Q Consensus 9 ~~~riavl~SG~Gsnl~al~~~~~~~~~~l~~~iv~Visn~-~~a~gl~~A~~~gIP~~~v~~~~~~~~~~~~~i~~~l~ 87 (263)
.++||+||+||+||||++|+++ ++.+.++++|++|+||+ +++. ++|+++|||++++++....+.++++++++.+
T Consensus 88 ~~~ri~vl~Sg~g~nl~~ll~~--~~~g~l~~~i~~Visn~p~~~~--~~A~~~gIp~~~~~~~~~~r~~~~~~~~~~l- 162 (288)
T 3obi_A 88 TRRKVMLLVSQSDHCLADILYR--WRVGDLHMIPTAIVSNHPRETF--SGFDFGDIPFYHFPVNKDTRRQQEAAITALI- 162 (288)
T ss_dssp SCEEEEEEECSCCHHHHHHHHH--HHTTSSCEEEEEEEESSCGGGS--CCTTTTTCCEEECCCCTTTHHHHHHHHHHHH-
T ss_pred CCcEEEEEEcCCCCCHHHHHHH--HHCCCCCeEEEEEEcCCChhHH--HHHHHcCCCEEEeCCCcccHHHHHHHHHHHH-
Confidence 4779999999999999999966 56788899999999999 7765 6799999999999876523337778888888
Q ss_pred cccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEE----ee--cCCcCCccccccCCcEEEEecC-CCCCccccceeE
Q psy13615 88 AKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGA----VE--KASLLPKVKDVAAGDVVIALPS-SGIHSNGFSLVL 160 (263)
Q Consensus 88 ~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~----~~--~~~~in~hpsl~~g~~ii~Lp~-~G~~~~g~Sl~~ 160 (263)
++ +++|+++|||||+.+ ++ +.++||+|||+ ||+ .|.+.. +|
T Consensus 163 -~~-------------------~~~Dlivlagy~~il~~~~l~~~~~~~iNiHpSl--------LP~~rG~~p~----~~ 210 (288)
T 3obi_A 163 -AQ-------------------THTDLVVLARYMQILSDEMSARLAGRCINIHHSF--------LPGFKGAKPY----HQ 210 (288)
T ss_dssp -HH-------------------HTCCEEEESSCCSCCCHHHHHHTTTSEEEEEEEC--------SSCCCSSCHH----HH
T ss_pred -Hh-------------------cCCCEEEhhhhhhhCCHHHHhhhcCCeEEeCccc--------ccCCCCchHH----HH
Confidence 77 899999999999843 22 45799999999 998 565543 34
Q ss_pred EEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHH-------HHHHHHHHHHhcCC
Q psy13615 161 CFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDT-------ILMRVIKKMIAEGT 226 (263)
Q Consensus 161 ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~-------il~~~i~~~~~eg~ 226 (263)
++.+ |++.+|+| .| +++++.|+|+|+.|..+|+.++|+.+++.++ +|+++++++.+...
T Consensus 211 A~~~--G~~~~G~T-vh----~v~~~~D~GpIi~Q~~v~i~~~dt~~~L~~r~~~~e~~~l~~av~~~~~~~~ 276 (288)
T 3obi_A 211 AFDR--GVKLIGAT-AH----YVTSALDEGPIIDQDVERISHRDTPADLVRKGRDIERRVLSRALHYHLDDRV 276 (288)
T ss_dssp HHHH--TCSEEEEE-EE----ECCSSTTCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHc--CCCEEEEE-EE----EECCCCcCCCeEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCE
Confidence 5454 46779999 47 9999999999999999999888888876654 68999999876543
No 13
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=99.96 E-value=6.4e-30 Score=222.59 Aligned_cols=174 Identities=21% Similarity=0.298 Sum_probs=143.7
Q ss_pred ccEEEEEcCcchhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCH-HHHHHHHHHhccc
Q psy13615 11 KRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLIL-SNSLQVMQKVGAK 89 (263)
Q Consensus 11 ~riavl~SG~Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~-~~~~~i~~~l~~~ 89 (263)
+||+||+||+|+|+++++++. ..+.++++|++|+||+++++++++|+++|||++++++.++.++ ++++++++.+ +
T Consensus 4 ~ki~vl~sG~g~~~~~~l~~l--~~~~l~~~I~~Vit~~~~~~v~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~~l--~ 79 (212)
T 3av3_A 4 KRLAVFASGSGTNFQAIVDAA--KRGDLPARVALLVCDRPGAKVIERAARENVPAFVFSPKDYPSKAAFESEILREL--K 79 (212)
T ss_dssp EEEEEECCSSCHHHHHHHHHH--HTTCCCEEEEEEEESSTTCHHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHH--H
T ss_pred cEEEEEEECCcHHHHHHHHHH--HhCCCCCeEEEEEeCCCCcHHHHHHHHcCCCEEEeCcccccchhhhHHHHHHHH--H
Confidence 589999999999999999764 4455678999999999999999999999999999988877665 7788888877 6
Q ss_pred cCCCCceeeeccccccCCCCcCCCcEEEeeeeeEE----ee--cCCcCCccccccCCcEEEEecC-CCCCccccceeEEE
Q psy13615 90 YSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGA----VE--KASLLPKVKDVAAGDVVIALPS-SGIHSNGFSLVLCF 162 (263)
Q Consensus 90 ~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~----~~--~~~~in~hpsl~~g~~ii~Lp~-~G~~~~g~Sl~~ai 162 (263)
+ +++|++++||||+.+ ++ +.+++|+|||+ ||+ .|.+.. +|++
T Consensus 80 ~-------------------~~~Dliv~a~y~~il~~~~l~~~~~~~iNiHpSL--------LP~yrG~~pi----~~Ai 128 (212)
T 3av3_A 80 G-------------------RQIDWIALAGYMRLIGPTLLSAYEGKIVNIHPSL--------LPAFPGKDAI----GQAY 128 (212)
T ss_dssp H-------------------TTCCEEEESSCCSCCCHHHHHHTTTCEEEEESSC--------TTSSCSTTHH----HHHH
T ss_pred h-------------------cCCCEEEEchhhhhCCHHHHhhhcCCEEEEecCc--------CCCCCCcCHH----HHHH
Confidence 7 899999999999843 23 35799999999 998 555443 4455
Q ss_pred ecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHH-------HHHHHHHHHHhcCC
Q psy13615 163 TDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDT-------ILMRVIKKMIAEGT 226 (263)
Q Consensus 163 ~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~-------il~~~i~~~~~eg~ 226 (263)
.+| .+.+|+| .| ++|+|.|||+|++|..+|+.++|+.+++.++ +|+++++.+.+...
T Consensus 129 ~~G--~~~tGvT-vh----~v~~~~D~G~Ii~Q~~v~I~~~dt~~~L~~r~~~~~~~ll~~~l~~~~~g~~ 192 (212)
T 3av3_A 129 RAG--VSETGVT-VH----YVDEGMDTGPVIAQRVVPIVPGEPIEALEERIHQVEHELYPTVLRMLLGEKE 192 (212)
T ss_dssp HHT--CSEEEEE-EE----ECCSSSSCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HcC--CCeEEEE-EE----EECCCCCCCCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 655 5679999 47 9999999999999999999999888887765 58888998865443
No 14
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=99.96 E-value=2e-29 Score=220.07 Aligned_cols=173 Identities=21% Similarity=0.277 Sum_probs=143.5
Q ss_pred ccEEEEEcCcchhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCH-HHHHHHHHHhccc
Q psy13615 11 KRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLIL-SNSLQVMQKVGAK 89 (263)
Q Consensus 11 ~riavl~SG~Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~-~~~~~i~~~l~~~ 89 (263)
+||+||+||+|+|+++++++. ..+.++++|++|+||++++.++++|+++|||++++++.++.++ ++++++++.+ +
T Consensus 2 ~rI~vl~SG~g~~~~~~l~~l--~~~~~~~~i~~Vvs~~~~~~~~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l--~ 77 (216)
T 2ywr_A 2 LKIGVLVSGRGSNLQAIIDAI--ESGKVNASIELVISDNPKAYAIERCKKHNVECKVIQRKEFPSKKEFEERMALEL--K 77 (216)
T ss_dssp EEEEEEECSCCHHHHHHHHHH--HTTSSCEEEEEEEESCTTCHHHHHHHHHTCCEEECCGGGSSSHHHHHHHHHHHH--H
T ss_pred CEEEEEEeCCcHHHHHHHHHH--HhCCCCCeEEEEEeCCCChHHHHHHHHcCCCEEEeCcccccchhhhhHHHHHHH--H
Confidence 589999999999999999774 3344567999999999999999999999999999988877665 7778888877 6
Q ss_pred cCCCCceeeeccccccCCCCcCCCcEEEeeeeeEE----ee--cCCcCCccccccCCcEEEEecC-CCCCccccceeEEE
Q psy13615 90 YSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGA----VE--KASLLPKVKDVAAGDVVIALPS-SGIHSNGFSLVLCF 162 (263)
Q Consensus 90 ~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~----~~--~~~~in~hpsl~~g~~ii~Lp~-~G~~~~g~Sl~~ai 162 (263)
+ +++|++++||||+.+ ++ +.+++|+|||+ ||+ .|.+.. +|++
T Consensus 78 ~-------------------~~~Dliv~a~y~~il~~~~l~~~~~~~iNiHpSL--------LP~yrG~~pi----~~ai 126 (216)
T 2ywr_A 78 K-------------------KGVELVVLAGFMRILSHNFLKYFPNKVINIHPSL--------IPAFQGLHAQ----KQAV 126 (216)
T ss_dssp H-------------------TTCCEEEESSCCSCCCHHHHTTSTTCEEEEESSC--------TTTTCSTTHH----HHHH
T ss_pred h-------------------cCCCEEEEeCchhhCCHHHHhhccCCeEEEcCCc--------CcCCCCccHH----HHHH
Confidence 7 899999999999843 33 35789999999 998 555543 3455
Q ss_pred ecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHH-------HHHHHHHHHHhcC
Q psy13615 163 TDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDT-------ILMRVIKKMIAEG 225 (263)
Q Consensus 163 ~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~-------il~~~i~~~~~eg 225 (263)
.+| .+.+|+| .| ++|+|.|||+|++|..+|+.++|+.+++.+| +++++++.+.+..
T Consensus 127 ~~G--~~~tGvT-vh----~v~~~~D~G~Ii~q~~~~i~~~dt~~~L~~rl~~~~~~ll~~~l~~~~~g~ 189 (216)
T 2ywr_A 127 EFG--VKFSGCT-VH----IVDESVDAGPVIVQAVVPVLPEDDENTLADRILKWEHKILPQTVQWFAQDR 189 (216)
T ss_dssp HHT--CSEEEEE-EE----ECCSSSSCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HcC--CCeEEEE-EE----EEcccCCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 655 5568999 47 9999999999999999999988888887765 5888898886543
No 15
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=99.96 E-value=2.3e-29 Score=221.49 Aligned_cols=174 Identities=22% Similarity=0.311 Sum_probs=144.6
Q ss_pred CccEEEEEcCcchhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCH-HHHHHHHHHhcc
Q psy13615 10 RKRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLIL-SNSLQVMQKVGA 88 (263)
Q Consensus 10 ~~riavl~SG~Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~-~~~~~i~~~l~~ 88 (263)
|+||+||+||+|+|+++++++. ..+.++++|++|+||+++++++++|+++|||++++++.++.++ ++++++++.+
T Consensus 22 ~~rI~~l~SG~g~~~~~~l~~l--~~~~~~~~I~~Vvt~~~~~~~~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l-- 97 (229)
T 3auf_A 22 MIRIGVLISGSGTNLQAILDGC--REGRIPGRVAVVISDRADAYGLERARRAGVDALHMDPAAYPSRTAFDAALAERL-- 97 (229)
T ss_dssp CEEEEEEESSCCHHHHHHHHHH--HTTSSSEEEEEEEESSTTCHHHHHHHHTTCEEEECCGGGSSSHHHHHHHHHHHH--
T ss_pred CcEEEEEEeCCcHHHHHHHHHH--HhCCCCCeEEEEEcCCCchHHHHHHHHcCCCEEEECcccccchhhccHHHHHHH--
Confidence 5699999999999999999764 3345568999999999999999999999999999988887665 7778888877
Q ss_pred ccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEE----ee--cCCcCCccccccCCcEEEEecC-CCCCccccceeEE
Q psy13615 89 KYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGA----VE--KASLLPKVKDVAAGDVVIALPS-SGIHSNGFSLVLC 161 (263)
Q Consensus 89 ~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~----~~--~~~~in~hpsl~~g~~ii~Lp~-~G~~~~g~Sl~~a 161 (263)
++ +++|++++||||+.+ ++ +.+++|+|||+ ||+ .|.+.. .|+
T Consensus 98 ~~-------------------~~~Dliv~agy~~IL~~~~l~~~~~~~iNiHpSL--------LP~yrG~~pi----~~A 146 (229)
T 3auf_A 98 QA-------------------YGVDLVCLAGYMRLVRGPMLTAFPNRILNIHPSL--------LPAFPGLEAQ----RQA 146 (229)
T ss_dssp HH-------------------TTCSEEEESSCCSCCCHHHHHHSTTCEEEEESSC--------TTSSCSSCHH----HHH
T ss_pred Hh-------------------cCCCEEEEcChhHhCCHHHHhhccCCEEEEccCc--------CcCCCCcCHH----HHH
Confidence 67 899999999999843 22 35799999999 998 554433 445
Q ss_pred EecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHH-------HHHHHHHHHHhcC
Q psy13615 162 FTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDT-------ILMRVIKKMIAEG 225 (263)
Q Consensus 162 i~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~-------il~~~i~~~~~eg 225 (263)
+.+| .+.+|+| .| ++|+|.|||+|++|..+|+.++|+.+++.+| +|+++++.+.+..
T Consensus 147 i~~G--~~~tGvT-vh----~v~~~~D~G~Ii~Q~~v~I~~~dt~~~L~~rl~~~~~~ll~~~l~~l~~g~ 210 (229)
T 3auf_A 147 LEHG--VKVAGCT-VH----FVTAGVDEGPIILQAAVPVLEGDTVEDLRRRILAEEHRIYPEAIRLFAEGR 210 (229)
T ss_dssp HHHT--CSEEEEE-EE----ECCSSTTCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHcC--CCeEEEE-EE----EECCCCcCCCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 5655 5669999 47 9999999999999999999999888887765 5888999886543
No 16
>2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N biosynthesis, methyltransferase; HET: FON U5P; 1.2A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 1yrw_A
Probab=99.83 E-value=4.3e-21 Score=175.25 Aligned_cols=160 Identities=15% Similarity=0.140 Sum_probs=125.9
Q ss_pred ccEEEEEcCc--chhHHHHHHHhccccCCCCceEEEEEecCCC-------ChhhHHHHHcCCCEEEeeCCCCCCHHHHHH
Q psy13615 11 KRVAVLISGT--GTNLKSLLEATSNRSDIMRAEIVLVVSNKHN-------VEGLNIARNAGIPTKVSTYKHTLILSNSLQ 81 (263)
Q Consensus 11 ~riavl~SG~--Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~-------a~gl~~A~~~gIP~~~v~~~~~~~~~~~~~ 81 (263)
+||+||+|+. ++||++|+++ +.+|++|+||.++ +++.++|+++|||++.++... + .+
T Consensus 1 mrivf~gt~~fa~~~L~~L~~~--------~~~i~~Vvt~~d~~~g~~~~~~v~~~A~~~gIpv~~~~~~~--~----~~ 66 (305)
T 2bln_A 1 MKTVVFAYHDMGCLGIEALLAA--------GYEISAIFTHTDNPGEKAFYGSVARLAAERGIPVYAPDNVN--H----PL 66 (305)
T ss_dssp CEEEEEECHHHHHHHHHHHHHT--------TCEEEEEECCCC------CCCCHHHHHHHHTCCEECCSCCC--S----HH
T ss_pred CEEEEEEcCHHHHHHHHHHHHC--------CCcEEEEEcCCCCCCCCcCccHHHHHHHHcCCCEECCCcCC--c----HH
Confidence 4899999998 9999999843 3699999998655 368999999999999876543 2 23
Q ss_pred HHHHhccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEE----ee--cCCcCCccccccCCcEEEEecCCCCCccc
Q psy13615 82 VMQKVGAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGA----VE--KASLLPKVKDVAAGDVVIALPSSGIHSNG 155 (263)
Q Consensus 82 i~~~l~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~----~~--~~~~in~hpsl~~g~~ii~Lp~~G~~~~g 155 (263)
+++.+ ++ +++|++++||||+.+ ++ +.+++|+|||+ ||. ++|
T Consensus 67 ~~~~l--~~-------------------~~~Dliv~~~y~~ilp~~il~~~~~g~iNiHpSL--------LP~----yRG 113 (305)
T 2bln_A 67 WVERI--AQ-------------------LSPDVIFSFYYRHLIYDEILQLAPAGAFNLHGSL--------LPK----YRG 113 (305)
T ss_dssp HHHHH--HH-------------------TCCSEEEEESCCSCCCHHHHTTCTTCEEEEESSC--------TTT----TEE
T ss_pred HHHHH--Hh-------------------cCCCEEEEeccccccCHHHHhcCcCCEEEecCCc--------CcC----CCC
Confidence 44555 56 889999999999842 22 35689999999 998 344
Q ss_pred cce-eEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHH-------HHHHHHHHHHhc
Q psy13615 156 FSL-VLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDT-------ILMRVIKKMIAE 224 (263)
Q Consensus 156 ~Sl-~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~-------il~~~i~~~~~e 224 (263)
.++ +|++.+| .+.+|+| .| +.|+|.|||+|.+|..+|+.++|+.+++.++ ++.++++.+.+.
T Consensus 114 ~~pi~~ai~~G--~~~tGvT-ih----~~~~~~D~G~Ii~q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~l~~l~~g 183 (305)
T 2bln_A 114 RAPLNWVLVNG--ETETGVT-LH----RMVKRADAGAIVAQLRIAIAPDDIAITLHHKLCHAARQLLEQTLPAIKHG 183 (305)
T ss_dssp SCHHHHHHHTT--CSEEEEE-EE----ECCSSTTCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHcC--CCcEEEE-EE----EECCCccCCCeEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 444 5566766 4559999 46 9999999999999999999998888888776 478888888643
No 17
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* 3r8x_A
Probab=99.82 E-value=9.3e-21 Score=173.69 Aligned_cols=162 Identities=17% Similarity=0.156 Sum_probs=125.3
Q ss_pred CCccEEEEEcCc--chhHHHHHHHhccccCCCCceEEEEEec--CCC--------ChhhHHHHHcCCCEEEeeCCCCCCH
Q psy13615 9 QRKRVAVLISGT--GTNLKSLLEATSNRSDIMRAEIVLVVSN--KHN--------VEGLNIARNAGIPTKVSTYKHTLIL 76 (263)
Q Consensus 9 ~~~riavl~SG~--Gsnl~al~~~~~~~~~~l~~~iv~Visn--~~~--------a~gl~~A~~~gIP~~~v~~~~~~~~ 76 (263)
.++||+||+|+. +++|++|+++ +.+|++|+|| ++. +++.++|+++|||++.. .++.+
T Consensus 2 ~~mrIvf~Gt~~fa~~~L~~L~~~--------~~~i~~Vvt~pd~p~grg~~~~~~~v~~~A~~~gIpv~~~--~~~~~- 70 (314)
T 1fmt_A 2 ESLRIIFAGTPDFAARHLDALLSS--------GHNVVGVFTQPDRPAGRGKKLMPSPVKVLAEEKGLPVFQP--VSLRP- 70 (314)
T ss_dssp CCCEEEEEECSHHHHHHHHHHHHT--------TCEEEEEECCCCBC------CBCCHHHHHHHHTTCCEECC--SCSCS-
T ss_pred CCCEEEEEecCHHHHHHHHHHHHC--------CCcEEEEEeCCCCccccccccCcCHHHHHHHHcCCcEEec--CCCCC-
Confidence 457999999999 9999999842 2699999998 332 57899999999998643 33323
Q ss_pred HHHHHHHHHhccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEE----ee--cCCcCCccccccCCcEEEEecCCC
Q psy13615 77 SNSLQVMQKVGAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGA----VE--KASLLPKVKDVAAGDVVIALPSSG 150 (263)
Q Consensus 77 ~~~~~i~~~l~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~----~~--~~~~in~hpsl~~g~~ii~Lp~~G 150 (263)
.++++.+ ++ +++|++++||||+.+ ++ +.+++|+|||+ ||.
T Consensus 71 ---~~~~~~l--~~-------------------~~~Dliv~~~y~~ilp~~il~~~~~g~iNiHpSL--------LP~-- 116 (314)
T 1fmt_A 71 ---QENQQLV--AE-------------------LQADVMVVVAYGLILPKAVLEMPRLGCINVHGSL--------LPR-- 116 (314)
T ss_dssp ---HHHHHHH--HH-------------------TTCSEEEEESCCSCCCHHHHHSSTTCEEEEESSS--------TTT--
T ss_pred ---HHHHHHH--Hh-------------------cCCCEEEEeeccccCCHHHHhhccCCEEEEcCCc--------CcC--
Confidence 2344555 56 889999999999842 33 35689999999 998
Q ss_pred CCccccce-eEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHH-------HHHHHHHHHH
Q psy13615 151 IHSNGFSL-VLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDT-------ILMRVIKKMI 222 (263)
Q Consensus 151 ~~~~g~Sl-~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~-------il~~~i~~~~ 222 (263)
++|.++ +|++.+| .+.+|+| .| +.|+|.|||+|.+|..+|+.++|+.+++.++ ++.++++.+.
T Consensus 117 --yRG~~pi~~Ai~~G--~~~tGvT-ih----~~~~~~D~G~Ii~q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~l~~l~ 187 (314)
T 1fmt_A 117 --WRGAAPIQRSLWAG--DAETGVT-IM----QMDVGLDTGDMLYKLSCPITAEDTSGTLYDKLAELGPQGLITTLKQLA 187 (314)
T ss_dssp --TBSSCHHHHHHHHT--CSEEEEE-EE----ECCSSSSCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCCcCHHHHHHHcC--CCceEEE-EE----EEcccCcCCCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444 5677766 4558999 46 9999999999999999999998888887765 5788888886
Q ss_pred hc
Q psy13615 223 AE 224 (263)
Q Consensus 223 ~e 224 (263)
+.
T Consensus 188 ~g 189 (314)
T 1fmt_A 188 DG 189 (314)
T ss_dssp HT
T ss_pred cC
Confidence 53
No 18
>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1
Probab=99.81 E-value=1.8e-20 Score=185.95 Aligned_cols=160 Identities=15% Similarity=0.147 Sum_probs=126.1
Q ss_pred ccEEEEEcCc--chhHHHHHHHhccccCCCCceEEEEEecCCCC-------hhhHHHHHcCCCEEEeeCCCCCCHHHHHH
Q psy13615 11 KRVAVLISGT--GTNLKSLLEATSNRSDIMRAEIVLVVSNKHNV-------EGLNIARNAGIPTKVSTYKHTLILSNSLQ 81 (263)
Q Consensus 11 ~riavl~SG~--Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a-------~gl~~A~~~gIP~~~v~~~~~~~~~~~~~ 81 (263)
+||+||+|+. ++||++|+++ +++|++|+||++++ ++.++|+++|||++.++.... .+
T Consensus 1 ~ri~~~~s~~~~~~~l~~l~~~--------~~~i~~v~t~~~~~~~~~~~~~~~~~a~~~~ip~~~~~~~~~------~~ 66 (660)
T 1z7e_A 1 MKTVVFAYHDMGCLGIEALLAA--------GYEISAIFTHTDNPGEKAFYGSVARLAAERGIPVYAPDNVNH------PL 66 (660)
T ss_dssp CEEEEEECHHHHHHHHHHHHHT--------TCEEEEEECCCC--------CCHHHHHHHHTCCEECCSCTTS------HH
T ss_pred CEEEEEEeCHHHHHHHHHHHhC--------CCCEEEEEeCCCCCccCcCccHHHHHHHHcCCCEeccCCCCc------HH
Confidence 4899999998 9999999943 36999999997664 589999999999988765431 23
Q ss_pred HHHHhccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEE----ee--cCCcCCccccccCCcEEEEecC-CCCCcc
Q psy13615 82 VMQKVGAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGA----VE--KASLLPKVKDVAAGDVVIALPS-SGIHSN 154 (263)
Q Consensus 82 i~~~l~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~----~~--~~~~in~hpsl~~g~~ii~Lp~-~G~~~~ 154 (263)
+++.+ ++ +++|++++||||+.+ ++ +.++||+|||| ||+ .|.+..
T Consensus 67 ~~~~l--~~-------------------~~~d~iv~~~~~~il~~~~l~~~~~~~iNiH~sl--------LP~~rG~~p~ 117 (660)
T 1z7e_A 67 WVERI--AQ-------------------LSPDVIFSFYYRHLIYDEILQLAPAGAFNLHGSL--------LPKYRGRAPL 117 (660)
T ss_dssp HHHHH--HH-------------------HCCSEEEEESCCSCCCHHHHTTCTTCEEEEESSS--------TTTTCSSCHH
T ss_pred HHHHH--Hh-------------------cCCCEEEEcCcccccCHHHHhcCCCCeEEecCCc--------CCCCCCccHH
Confidence 45555 56 789999999999843 33 35689999999 998 554433
Q ss_pred ccceeEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHH-------HHHHHHHHHHhc
Q psy13615 155 GFSLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDT-------ILMRVIKKMIAE 224 (263)
Q Consensus 155 g~Sl~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~-------il~~~i~~~~~e 224 (263)
+|++.+| .+.+|+| .| ++|+|.|||+|++|..+|+.++|+.+++.++ ++.++++.+.+.
T Consensus 118 ----~~ai~~g--~~~~G~t-~~----~~~~~~D~G~ii~q~~~~i~~~dt~~~l~~~~~~~~~~~~~~~l~~~~~~ 183 (660)
T 1z7e_A 118 ----NWVLVNG--ETETGVT-LH----RMVKRADAGAIVAQLRIAIAPDDIAITLHHKLCHAARQLLEQTLPAIKHG 183 (660)
T ss_dssp ----HHHHHTT--CSEEEEE-EE----ECCSSTTTSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ----HHHHHcC--CCcEEEE-EE----EECCCccCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4466655 5569999 47 9999999999999999999988888887765 578888888543
No 19
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae}
Probab=99.79 E-value=5.5e-20 Score=168.82 Aligned_cols=165 Identities=15% Similarity=0.145 Sum_probs=122.0
Q ss_pred eccCCccEEEEEcCc--chhHHHHHHHhccccCCCCceEEEEEec--CCC--------ChhhHHHHHcCCCEEEeeCCCC
Q psy13615 6 RMVQRKRVAVLISGT--GTNLKSLLEATSNRSDIMRAEIVLVVSN--KHN--------VEGLNIARNAGIPTKVSTYKHT 73 (263)
Q Consensus 6 ~m~~~~riavl~SG~--Gsnl~al~~~~~~~~~~l~~~iv~Visn--~~~--------a~gl~~A~~~gIP~~~v~~~~~ 73 (263)
-||+++||+||+|.. -.+|++|+++ +++|++|+|+ ++. ++..++|+++|||++. +.++
T Consensus 3 ~m~~~mrivf~Gt~~fa~~~L~~L~~~--------~~~v~~Vvt~pd~p~grg~~~~~~~v~~~A~~~gIpv~~--~~~~ 72 (318)
T 3q0i_A 3 AMSQSLRIVFAGTPDFAARHLAALLSS--------EHEIIAVYTQPERPAGRGKKLTASPVKTLALEHNVPVYQ--PENF 72 (318)
T ss_dssp ----CCEEEEECCSHHHHHHHHHHHTS--------SSEEEEEECCCC---------CCCHHHHHHHHTTCCEEC--CSCS
T ss_pred ccccCCEEEEEecCHHHHHHHHHHHHC--------CCcEEEEEcCCCCcccccccCCCCHHHHHHHHcCCCEEc--cCcC
Confidence 378889999999987 5788888822 3699999996 333 4668999999999864 3333
Q ss_pred CCHHHHHHHHHHhccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEE----ee--cCCcCCccccccCCcEEEEec
Q psy13615 74 LILSNSLQVMQKVGAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGA----VE--KASLLPKVKDVAAGDVVIALP 147 (263)
Q Consensus 74 ~~~~~~~~i~~~l~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~----~~--~~~~in~hpsl~~g~~ii~Lp 147 (263)
.+ .++++.+ ++ +++|++++||||+.+ ++ +..++|+|||+ ||
T Consensus 73 ~~----~~~~~~l--~~-------------------~~~Dliv~~~y~~ilp~~~l~~~~~g~iNiHpSl--------LP 119 (318)
T 3q0i_A 73 KS----DESKQQL--AA-------------------LNADLMVVVAYGLLLPKVVLDTPKLGCINVHGSI--------LP 119 (318)
T ss_dssp CS----HHHHHHH--HT-------------------TCCSEEEESSCCSCCCHHHHTSSTTCEEEEESSS--------TT
T ss_pred CC----HHHHHHH--Hh-------------------cCCCEEEEeCccccCCHHHHhhCcCCEEEeCCcc--------Cc
Confidence 33 2345656 66 899999999999843 22 34589999999 99
Q ss_pred C-CCCCccccceeEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHH-------HHHHHHH
Q psy13615 148 S-SGIHSNGFSLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDT-------ILMRVIK 219 (263)
Q Consensus 148 ~-~G~~~~g~Sl~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~-------il~~~i~ 219 (263)
. .|.+.. +|++.+| ...+|+| .| +.|+|.|||+|++|..+|+.++|+.+++.++ ++.++++
T Consensus 120 ~yRG~~pi----~~Ai~~G--~~~tGvT-ih----~~~~~~D~G~Ii~q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~l~ 188 (318)
T 3q0i_A 120 RWRGAAPI----QRSIWAG--DSETGVT-IM----QMDVGLDTGDMLKIATLPIEASDTSASMYDKLAELGPQALLECLQ 188 (318)
T ss_dssp TTBSSCHH----HHHHHHT--CSEEEEE-EE----ECCSSSSCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcCHH----HHHHHcC--CCeEEEE-EE----EEcCCCCCCCEEEEEEEeeCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 8 444322 5566766 4559999 46 9999999999999999999988888887765 5778888
Q ss_pred HHHhc
Q psy13615 220 KMIAE 224 (263)
Q Consensus 220 ~~~~e 224 (263)
.+.+.
T Consensus 189 ~l~~g 193 (318)
T 3q0i_A 189 DIAQG 193 (318)
T ss_dssp HHHHT
T ss_pred HHHcC
Confidence 88653
No 20
>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A
Probab=99.77 E-value=9.8e-20 Score=167.88 Aligned_cols=170 Identities=15% Similarity=0.098 Sum_probs=121.7
Q ss_pred eccCCccEEEEEcCcchhHHH-HHHHhccccCCCCceEEEEEe--cCC--CChhhHHHHHcCCCEEEeeCCCCCCHHHHH
Q psy13615 6 RMVQRKRVAVLISGTGTNLKS-LLEATSNRSDIMRAEIVLVVS--NKH--NVEGLNIARNAGIPTKVSTYKHTLILSNSL 80 (263)
Q Consensus 6 ~m~~~~riavl~SG~Gsnl~a-l~~~~~~~~~~l~~~iv~Vis--n~~--~a~gl~~A~~~gIP~~~v~~~~~~~~~~~~ 80 (263)
.|+.++||+||+ ++||.. ++++... . +.+|++|+| |++ ..+..++|+++|||++.++.... +.++..
T Consensus 18 ~~~~~mrIvf~G---~~~fa~~~L~~L~~--~--~~~i~~Vvt~pd~~~~~~~v~~~A~~~gIpv~~~~~~~~-~~~~~~ 89 (329)
T 2bw0_A 18 LYFQSMKIAVIG---QSLFGQEVYCHLRK--E--GHEVVGVFTVPDKDGKADPLGLEAEKDGVPVFKYSRWRA-KGQALP 89 (329)
T ss_dssp ---CCCEEEEEC---CHHHHHHHHHHHHH--T--TCEEEEEEECCCCSSCCCHHHHHHHHHTCCEEECSCCEE-TTEECH
T ss_pred ccCCCCEEEEEc---CcHHHHHHHHHHHH--C--CCeEEEEEeCCCcCCCCCHHHHHHHHcCCCEEecCcccc-cccccH
Confidence 466678999993 467764 5554322 2 369999999 221 24667999999999999875321 113345
Q ss_pred HHHHHhccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEE----ee--cCCcCCccccccCCcEEEEecC-CCCCc
Q psy13615 81 QVMQKVGAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGA----VE--KASLLPKVKDVAAGDVVIALPS-SGIHS 153 (263)
Q Consensus 81 ~i~~~l~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~----~~--~~~~in~hpsl~~g~~ii~Lp~-~G~~~ 153 (263)
++++.+ ++ +++|++++||||+.+ ++ +.++||+|||+ ||. .|.+.
T Consensus 90 ~~~~~l--~~-------------------~~~Dliv~a~y~~ilp~~il~~~~~g~iNiHpSL--------LP~yRG~~p 140 (329)
T 2bw0_A 90 DVVAKY--QA-------------------LGAELNVLPFCSQFIPMEIISAPRHGSIIYHPSL--------LPRHRGASA 140 (329)
T ss_dssp HHHHHH--HT-------------------TCCSEEEESSCSSCCCHHHHTCSTTCEEEEESSC--------TTTTBSSCH
T ss_pred HHHHHH--Hh-------------------cCCCEEEEeehhhhCCHHHHhhCcCCEEEEcCCc--------CcCCCCcCH
Confidence 566766 66 899999999999842 23 35689999999 998 44433
Q ss_pred cccceeEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHHH--------HHHHHHHHHh
Q psy13615 154 NGFSLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTI--------LMRVIKKMIA 223 (263)
Q Consensus 154 ~g~Sl~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~i--------l~~~i~~~~~ 223 (263)
. +|++.+| .+.+|+| .| ++|+|.|||+|++|..+|+.++|+.+++.+++ +.++++.+.+
T Consensus 141 i----~~Ai~~G--~~~tGvT-vh----~~~~~lDtG~Ii~Q~~v~I~~~dt~~~L~~r~l~~~~~~ll~~~l~~l~~ 207 (329)
T 2bw0_A 141 I----NWTLIHG--DKKGGFS-IF----WADDGLDTGDLLLQKECEVLPDDTVSTLYNRFLFPEGIKGMVQAVRLIAE 207 (329)
T ss_dssp H----HHHHHTT--CSEEEEE-EE----ECCSSSSCSCEEEEEEEECCTTCCHHHHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred H----HHHHHcC--CCcEEEE-EE----EECCcCcCCCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 2 4566665 5569999 46 89999999999999999999999998888773 4456666654
No 21
>3rfo_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure, cytosol; HET: PGE; 2.40A {Bacillus anthracis}
Probab=99.72 E-value=6.4e-18 Score=155.03 Aligned_cols=161 Identities=16% Similarity=0.133 Sum_probs=120.6
Q ss_pred CccEEEEEcCc--chhHHHHHHHhccccCCCCceEEEEEecCCC----------ChhhHHHHHcCCCEEEeeCCCCCCHH
Q psy13615 10 RKRVAVLISGT--GTNLKSLLEATSNRSDIMRAEIVLVVSNKHN----------VEGLNIARNAGIPTKVSTYKHTLILS 77 (263)
Q Consensus 10 ~~riavl~SG~--Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~----------a~gl~~A~~~gIP~~~v~~~~~~~~~ 77 (263)
|+||+||+|.. -..|++|+++ +.+|++|+|+.+. .++.++|+++|||++.. .++.+.+
T Consensus 4 mmrIvf~Gtp~fa~~~L~~L~~~--------~~~v~~Vvt~pd~~~gRg~~l~~~pv~~~A~~~gIpv~~~--~~~~~~~ 73 (317)
T 3rfo_A 4 MIKVVFMGTPDFSVPVLRRLIED--------GYDVIGVVTQPDRPVGRKKVLTPTPVKVEAEKHGIPVLQP--LRIREKD 73 (317)
T ss_dssp TSEEEEECCSTTHHHHHHHHHHT--------TCEEEEEECCCCCEETTTTEECCCHHHHHHHHTTCCEECC--SCTTSHH
T ss_pred ceEEEEEeCCHHHHHHHHHHHHC--------CCcEEEEEeCCCcccCCCcccCCCHHHHHHHHcCCCEEcc--ccCCCHH
Confidence 46899999987 4678888732 3699999997422 35789999999997643 3332322
Q ss_pred HHHHHHHHhccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEE----ee--cCCcCCccccccCCcEEEEecCCCC
Q psy13615 78 NSLQVMQKVGAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGA----VE--KASLLPKVKDVAAGDVVIALPSSGI 151 (263)
Q Consensus 78 ~~~~i~~~l~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~----~~--~~~~in~hpsl~~g~~ii~Lp~~G~ 151 (263)
.++.+ ++ +++|+++++|||+.+ ++ +..++|+|||+ ||.
T Consensus 74 ----~~~~l--~~-------------------~~~Dliv~~~y~~ilp~~~l~~~~~g~iNiHpSl--------LP~--- 117 (317)
T 3rfo_A 74 ----EYEKV--LA-------------------LEPDLIVTAAFGQIVPNEILEAPKYGCINVHASL--------LPE--- 117 (317)
T ss_dssp ----HHHHH--HH-------------------HCCSEEEESSCCSCCCHHHHHSSTTCEEEEESSC--------TTS---
T ss_pred ----HHHHH--Hh-------------------cCCCEEEEcCchhhCCHHHHhhCcCCEEEECCcc--------CcC---
Confidence 24545 56 789999999999842 22 34589999999 998
Q ss_pred Cccccce-eEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHH-------HHHHHHHHHHh
Q psy13615 152 HSNGFSL-VLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDT-------ILMRVIKKMIA 223 (263)
Q Consensus 152 ~~~g~Sl-~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~-------il~~~i~~~~~ 223 (263)
++|.++ +|++.+| ...+|+| .| +.|+|.|||+|++|..+|+.++|+.+++.++ ++.++++.+.+
T Consensus 118 -yRG~~pi~~Ai~~G--~~~tGvT-ih----~~~~~~DtG~Ii~q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~l~~l~~ 189 (317)
T 3rfo_A 118 -LRGGAPIHYAIMEG--KEKTGIT-IM----YMVEKLDAGDILTQVEVEIEERETTGSLFDKLSEAGAHLLSKTVPLLIQ 189 (317)
T ss_dssp -SBSSCHHHHHHHTT--CSEEEEE-EE----ECCSSTTCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -CCCcCHHHHHHHcC--CCceEEE-EE----EEcccCCCCCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333333 5577766 4569999 46 9999999999999999999988888887765 47788888864
Q ss_pred c
Q psy13615 224 E 224 (263)
Q Consensus 224 e 224 (263)
.
T Consensus 190 g 190 (317)
T 3rfo_A 190 G 190 (317)
T ss_dssp T
T ss_pred C
Confidence 3
No 22
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii}
Probab=99.72 E-value=9.7e-18 Score=153.64 Aligned_cols=161 Identities=16% Similarity=0.179 Sum_probs=120.1
Q ss_pred CccEEEEEcCc--chhHHHHHHHhccccCCCCceEEEEEec--CC--------CChhhHHHHHcCCCEEEeeCCCCCCHH
Q psy13615 10 RKRVAVLISGT--GTNLKSLLEATSNRSDIMRAEIVLVVSN--KH--------NVEGLNIARNAGIPTKVSTYKHTLILS 77 (263)
Q Consensus 10 ~~riavl~SG~--Gsnl~al~~~~~~~~~~l~~~iv~Visn--~~--------~a~gl~~A~~~gIP~~~v~~~~~~~~~ 77 (263)
++||+||+|.. -..|++|+++ +.+|++|+|+ ++ .++..++|+++|||++. ..++.+.
T Consensus 2 ~mrivf~Gtp~fa~~~L~~L~~~--------~~~v~~Vvt~pd~~~grg~~l~~~~v~~~A~~~gIpv~~--~~~~~~~- 70 (314)
T 3tqq_A 2 SLKIVFAGTPQFAVPTLRALIDS--------SHRVLAVYTQPDRPSGRGQKIMESPVKEIARQNEIPIIQ--PFSLRDE- 70 (314)
T ss_dssp CCEEEEEECSGGGHHHHHHHHHS--------SSEEEEEECCCC----------CCHHHHHHHHTTCCEEC--CSCSSSH-
T ss_pred CcEEEEECCCHHHHHHHHHHHHC--------CCeEEEEEeCCCCccccCCccCCCHHHHHHHHcCCCEEC--cccCCCH-
Confidence 35999999997 4578888732 3699999994 44 24667999999999754 3333332
Q ss_pred HHHHHHHHhccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEE----ee--cCCcCCccccccCCcEEEEecCCCC
Q psy13615 78 NSLQVMQKVGAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGA----VE--KASLLPKVKDVAAGDVVIALPSSGI 151 (263)
Q Consensus 78 ~~~~i~~~l~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~----~~--~~~~in~hpsl~~g~~ii~Lp~~G~ 151 (263)
++++.+ ++ +++|+++++|||+.+ ++ +..++|+|||+ ||.
T Consensus 71 ---~~~~~l--~~-------------------~~~Dliv~~~~~~ilp~~il~~~~~g~iNiHpSl--------LP~--- 115 (314)
T 3tqq_A 71 ---VEQEKL--IA-------------------MNADVMVVVAYGLILPKKALNAFRLGCVNVHASL--------LPR--- 115 (314)
T ss_dssp ---HHHHHH--HT-------------------TCCSEEEEESCCSCCCHHHHTSSTTCEEEEESSC--------TTT---
T ss_pred ---HHHHHH--Hh-------------------cCCCEEEEcCcccccCHHHHhhCcCCEEEecCcc--------ccC---
Confidence 345656 56 899999999999842 33 34589999999 998
Q ss_pred Cccccce-eEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHH-------HHHHHHHHHHh
Q psy13615 152 HSNGFSL-VLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDT-------ILMRVIKKMIA 223 (263)
Q Consensus 152 ~~~g~Sl-~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~-------il~~~i~~~~~ 223 (263)
++|.++ +|++.+|. ..+|+| .| +.|+|.|||+|.+|..+|+.++|+.+++.++ ++.++++.+.+
T Consensus 116 -yRG~~pi~~Ai~~G~--~~tGvT-ih----~~~~~~D~G~Ii~q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~l~~l~~ 187 (314)
T 3tqq_A 116 -WRGAAPIQRAILAGD--RETGIS-IM----QMNEGLDTGDVLAKSACVISSEDTAADLHDRLSLIGADLLLESLAKLEK 187 (314)
T ss_dssp -TBSSCHHHHHHHHTC--SEEEEE-EE----ECCSSSSCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCCccHHHHHHHcCC--CeeEEE-EE----eeecCCCCCCEEEEEEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 333333 55667664 559999 46 9999999999999999999988888887765 57788888864
Q ss_pred c
Q psy13615 224 E 224 (263)
Q Consensus 224 e 224 (263)
.
T Consensus 188 g 188 (314)
T 3tqq_A 188 G 188 (314)
T ss_dssp T
T ss_pred C
Confidence 3
No 23
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=99.55 E-value=9.4e-15 Score=138.53 Aligned_cols=112 Identities=34% Similarity=0.531 Sum_probs=96.4
Q ss_pred cEEEEecCCCCCccccceeEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHHH
Q psy13615 141 DVVIALPSSGIHSNGFSLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKK 220 (263)
Q Consensus 141 ~~ii~Lp~~G~~~~g~Sl~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~~ 220 (263)
.++|+-.-.| .++|+. ++.||..+.+++.+++||++++.|.||+||||++++|.|.++++..+++.+.++.++++.
T Consensus 186 ~vlvEe~i~G---~E~sv~-~~~dg~~~~~~~~~~~~~~~~~~~~g~~~gg~g~~~P~~~l~~~~~~~i~~~i~~~~~~~ 261 (431)
T 3mjf_A 186 RIVVEEFLDG---EEASFI-VMVDGENVLPMATSQDHKRVGDGDTGPNTGGMGAYSPAPVVTDDVHQRVMDQVIWPTVRG 261 (431)
T ss_dssp CEEEEECCCS---EEEEEE-EEEESSCEEECCCBEECCEEETTTEEEECSCSEEEESCTTSCHHHHHHHHHHTHHHHHHH
T ss_pred eEEEEEeeCC---cEEEEE-EEEcCCEEEEEEeeEeceecccCCCCCCCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4556444455 457764 778988888899999999999999999999999999999899999999998899999999
Q ss_pred HHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCCCC
Q psy13615 221 MIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGDP 263 (263)
Q Consensus 221 ~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~gdp 263 (263)
|..++++|+|+++++++.+..+ .+.|+|+|+|||||
T Consensus 262 ~~~~g~~~~G~~~ve~~~~~~g-------~~~viEiN~R~G~~ 297 (431)
T 3mjf_A 262 MAAEGNIYTGFLYAGLMISADG-------QPKVIEFNCRFGDP 297 (431)
T ss_dssp HHHTTCCCEEEEEEEEEECTTS-------CEEEEEECGGGSTT
T ss_pred HHHcCCCcEEEEEEEEEEeCCC-------CeEEEEEecCCCCc
Confidence 9999999999999999955433 05678999999998
No 24
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=99.51 E-value=2e-14 Score=136.78 Aligned_cols=112 Identities=30% Similarity=0.421 Sum_probs=96.3
Q ss_pred CcEEEEecCCCCCccccceeEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHH
Q psy13615 140 GDVVIALPSSGIHSNGFSLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIK 219 (263)
Q Consensus 140 g~~ii~Lp~~G~~~~g~Sl~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~ 219 (263)
..++|+-.-.| .++|+. ++.||..+.+++.+++|++.++.|.|++||||++++|.|.++++..+++.+.|+.++++
T Consensus 201 ~~vlvEe~i~G---~E~sv~-~~~dg~~~~~~~~~~~~~~~~~~~~g~~~gg~g~~~P~~~l~~~~~~~i~~~i~~~a~~ 276 (442)
T 3lp8_A 201 CAIIIEEFLEG---KEISFF-TLVDGSNPVILGVAQDYKTIGDNNKGPNTGGMGSYSKPNIITQEMEHIIIQKIIYPTIK 276 (442)
T ss_dssp SSEEEEECCCS---EEEEEE-EEEESSCEEEEEEEEECCEEEGGGEEEECSCSEEEECTTSSCHHHHHHHHHHTHHHHHH
T ss_pred CeEEEEEeecC---cEEEEE-EEECCCeEEEeEEeEeeeecccCCCCCCCCCcEEEeeCCCCCHHHHHHHHHHHHHHHHH
Confidence 35566544345 457764 77898888888999999999999999999999999999989999999999889999999
Q ss_pred HHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCCCC
Q psy13615 220 KMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGDP 263 (263)
Q Consensus 220 ~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~gdp 263 (263)
.|..+|++|.|+++++|+. +..|+.++|+|+|||||
T Consensus 277 ~~~a~g~~~~G~~~ve~~~--------~~~g~~viEiN~R~g~~ 312 (442)
T 3lp8_A 277 AMFNMNIQFRGLLFAGIII--------KKNEPKLLEYNVRFGDP 312 (442)
T ss_dssp HHHHTTCCCEEEEEEEEEE--------ETTEEEEEEEESSCCTT
T ss_pred HHHHcCCCceeEEEEEEEE--------eCCCeEEEEEecCCCCC
Confidence 9999999999999999994 44456788999999997
No 25
>3kiz_A Phosphoribosylformylglycinamidine cyclo-ligase; STR genomics, joint center for structural genomics, JCSG; 1.50A {Cytophaga hutchinsonii atcc 33406}
Probab=99.30 E-value=1e-13 Score=129.80 Aligned_cols=138 Identities=14% Similarity=0.109 Sum_probs=108.9
Q ss_pred ccEEEEEcCc---chhHHHHHHHhc-----cccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCC------CH
Q psy13615 11 KRVAVLISGT---GTNLKSLLEATS-----NRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTL------IL 76 (263)
Q Consensus 11 ~riavl~SG~---Gsnl~al~~~~~-----~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~------~~ 76 (263)
.+-.+|+|++ ||+++-..+... .++..++.+.++++.||-.|.|.+ |.+++++ .++ ..
T Consensus 47 ~~~pvLv~~tDGVGTKl~lA~~~~k~tg~~~~~~tIG~daVam~VNDIaamGA~-------Pl~~L~~-a~g~l~~~~~~ 118 (394)
T 3kiz_A 47 DPEYCNIMHADGAGTKSSLAYVYWKETGDISVWKGIAQDAVIMNIDDLICVGAV-------DNILLSS-TIGRNKNLIPG 118 (394)
T ss_dssp CTTEEEEEEEEECTTHHHHHHHHHHHHCCTHHHHHHHHHHHHHHHHHHGGGTCC-------SSEEEEE-EEEECTTTSCH
T ss_pred CCCceEEEEccCCcHHHHHHHHhhhhcccccchhhhhhhheEeeHHHHHhCcCc-------hHHHHHh-hcCcCccCCCH
Confidence 3556788877 999987763210 123456789999999999999987 9988876 332 23
Q ss_pred HHHHHHHHHh--cc---ccCCCCc--eeeeccccccCCCCcCCCcEEEeeeeeEEeecCCcCCccccccCCcEEEEecCC
Q psy13615 77 SNSLQVMQKV--GA---KYSDIAP--FSQDGGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKDVAAGDVVIALPSS 149 (263)
Q Consensus 77 ~~~~~i~~~l--~~---~~~~~~~--~~~~gge~~~l~~~~~~d~i~LAG~m~~~~~~~~~in~hpsl~~g~~ii~Lp~~ 149 (263)
+..+++++++ +| ++ ++ |+++||||+++|++|.. +++++++.+++++++++.. ..+++||+||.++|+
T Consensus 119 e~l~~Iv~Gi~e~~~~~~~---aGvg~~LVGGeTae~p~l~~~--~~i~~t~vGiV~~~~ii~~-~~ak~GD~IIgl~Ss 192 (394)
T 3kiz_A 119 EVLAAIINGTEEVLQMLRD---NGIGIYSTGGETADVGDLVRT--IIVDSTVTCRMKRQDVISN-ENIKAGNVIVGFASY 192 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHH---TTCCEEEEEEEEEECTTTBSS--EEEEEEEEEEEEGGGCCCG-GGCCTTCEEEEEESS
T ss_pred HHHHHHHHHHHHHHHHHHH---hCCCceEEeeeeeEcCCcccC--ccEEEEEEEEEccCccccc-ccCCCCCEEEEECCc
Confidence 7888888887 44 45 76 89999999999999876 4566788999988888887 678999999999999
Q ss_pred C-----------CCccccceeEEE
Q psy13615 150 G-----------IHSNGFSLVLCF 162 (263)
Q Consensus 150 G-----------~~~~g~Sl~~ai 162 (263)
| +|+||||+.|.+
T Consensus 193 G~~~~~~~~~~~~HSNG~SLvRk~ 216 (394)
T 3kiz_A 193 GQTSYETEYNGGMGSNGLTSARHD 216 (394)
T ss_dssp BCCTTCSSCBCCCTTSSHHHHHHH
T ss_pred ccccccccccCCccchHHHHHHHH
Confidence 9 699999997764
No 26
>3mdo_A Putative phosphoribosylformylglycinamidine cyclo-; structural genomics, joint center for structural genomics; HET: MSE PGE P6G PG4; 1.91A {Parabacteroides distasonis}
Probab=99.29 E-value=1.1e-13 Score=129.34 Aligned_cols=138 Identities=15% Similarity=0.110 Sum_probs=108.0
Q ss_pred ccEEEEEcCc---chhHHHHHHHhc-----cccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCC------CH
Q psy13615 11 KRVAVLISGT---GTNLKSLLEATS-----NRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTL------IL 76 (263)
Q Consensus 11 ~riavl~SG~---Gsnl~al~~~~~-----~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~------~~ 76 (263)
.+-.+|+|++ ||+++-..+... .++..++.+.++++.||-.|.|.+ |.+++++ .++ ..
T Consensus 46 ~~~pvLv~~tDGVGTKl~lA~~~~k~~g~~~~~~tIG~daVamnVNDIaamGA~-------Pl~~L~~-a~g~l~~~~~~ 117 (389)
T 3mdo_A 46 DPEYCNIMHADGAGTKSSLAYMYWKETGDLSVWKGIAQDALIMNIDDLLCVGAV-------DNILVSS-TIGRNKLLVPG 117 (389)
T ss_dssp CTTEEEEEEEEECTTHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHTTTCC-------SSEEEEE-EEEECTTTSCH
T ss_pred CCCceEEEecCCCcHHHHHHHHhhhhccccchHHHHHhHheEeeHHHHHhCcCC-------hHHHHHh-hcCcCccCCCH
Confidence 3556788877 999987653210 123456789999999999999987 9988876 331 23
Q ss_pred HHHHHHHHHh--cc---ccCCCCc--eeeeccccccCCCCcCCCcEEEeeeeeEEeecCCcCCccccccCCcEEEEecCC
Q psy13615 77 SNSLQVMQKV--GA---KYSDIAP--FSQDGGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKDVAAGDVVIALPSS 149 (263)
Q Consensus 77 ~~~~~i~~~l--~~---~~~~~~~--~~~~gge~~~l~~~~~~d~i~LAG~m~~~~~~~~~in~hpsl~~g~~ii~Lp~~ 149 (263)
+..+++++++ .| ++ ++ |+++||||+++|+++... .+++++.|++++++++.. ..+++||+||.++|+
T Consensus 118 e~l~~Iv~Gi~e~c~~~~~---aGigv~LVGGeTae~p~l~~~~--~v~~t~vGiV~~~~ii~~-~~ak~GD~IIgl~S~ 191 (389)
T 3mdo_A 118 EVISAIINGTDELLAELRE---MGVGCYATGGETADVGDLVRTI--IVDSTVTCRMKRSDVIDN-KNIQGGDVIVGLASS 191 (389)
T ss_dssp HHHHHHHHHHHHHHHHHHH---TTCCEEEEEEEEEECTTTBSSE--EEEEEEEEEEEGGGCCCG-GGCCTTCEEEEEESS
T ss_pred HHHHHHHHHHHHHHHHHHH---hCCCcEEeCccceECCCcccCc--cEEEEEEEEEcccccccc-ccCCCCCEEEEECCc
Confidence 7888888887 34 35 65 999999999999988764 456788999988888886 678999999999999
Q ss_pred C-----------CCccccceeEEE
Q psy13615 150 G-----------IHSNGFSLVLCF 162 (263)
Q Consensus 150 G-----------~~~~g~Sl~~ai 162 (263)
| +|+||||+.|.+
T Consensus 192 G~~~~~~~~~~~~HSNG~SLvRk~ 215 (389)
T 3mdo_A 192 GQATYEKEYNGGMGSNGLTSARHD 215 (389)
T ss_dssp BCCTTCSSCBCCCCSSSHHHHHHH
T ss_pred ccccccccccCCccccHHHHHHHH
Confidence 9 599999997764
No 27
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=99.10 E-value=2.6e-10 Score=106.89 Aligned_cols=110 Identities=30% Similarity=0.482 Sum_probs=89.8
Q ss_pred CcEEEEecCCCCCccccceeEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHH
Q psy13615 140 GDVVIALPSSGIHSNGFSLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIK 219 (263)
Q Consensus 140 g~~ii~Lp~~G~~~~g~Sl~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~ 219 (263)
+.++|+-.-.| .++++. ++.||+.+.+++..++|++.++.+.++++|+|+.++|.+ ++++..+++ +++..++++
T Consensus 184 ~~vlvEe~i~G---~E~sv~-~~~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~-l~~~~~~~i-~~~a~~~~~ 257 (412)
T 1vkz_A 184 GPVVIDEFLAG---NELSAM-AVVNGRNFVILPFVRDYKRLMDGDRGPNTGGMGSWGPVE-IPSDTIKKI-EELFDKTLW 257 (412)
T ss_dssp SCEEEEECCCS---EEEEEE-EEEETTEEEECCCCEECCEEETTTEEEECSCSEEEECCC-CCHHHHHHH-HHHHHHHHH
T ss_pred CeEEEEECCcC---cEEEEE-EEECCCEEEEeeeeEeeeeccCCCCCCCCCCceEEECCC-CCHHHHHHH-HHHHHHHHH
Confidence 35666543345 357764 666887666666668899999999999999999999998 789988888 689999999
Q ss_pred HHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCCCC
Q psy13615 220 KMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGDP 263 (263)
Q Consensus 220 ~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~gdp 263 (263)
+|..+|..|.|+++++++.+ ..|+.++|+|+|+|++
T Consensus 258 ~l~~~g~~~~G~~~ve~~~~--------~~g~~viEiN~R~g~~ 293 (412)
T 1vkz_A 258 GVEKEGYAYRGFLYLGLMLH--------DGDPYILEYNVRLGDP 293 (412)
T ss_dssp HHHHTTCCCEEEEEEEEEEE--------TTEEEEEEEESSCCTT
T ss_pred HHHhcCCCcEEEEEEEEEEE--------CCCcEEEEEecCCCCC
Confidence 99999999999999999944 4446789999999985
No 28
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A
Probab=99.05 E-value=3.2e-10 Score=106.13 Aligned_cols=112 Identities=38% Similarity=0.560 Sum_probs=91.2
Q ss_pred CcEEEEecCCCCCccccceeEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHH
Q psy13615 140 GDVVIALPSSGIHSNGFSLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIK 219 (263)
Q Consensus 140 g~~ii~Lp~~G~~~~g~Sl~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~ 219 (263)
+.++|+-.-.| .++++. ++.+|..+.+++..++|+++++.+.++++|+|+.++|.+.++++..+++.+++..++++
T Consensus 180 ~~~lvEe~i~g---~E~sv~-~~~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~~~~~~~~~~~~~~~~~ 255 (424)
T 2yw2_A 180 ERVVIEEFLEG---EEASYI-VMINGDRYVPLPTSQDHKRLLDEDKGPNTGGMGAYSPTPVINEEVEKRIREEIVERVIK 255 (424)
T ss_dssp SSEEEEECCCS---EEEEEE-EEEETTEEEECCCBEECCEEETTTEEEECSCSEEEESCTTSCHHHHHHHHHHTHHHHHH
T ss_pred CeEEEEECCCC---cEEEEE-EEEcCCEEEeecceeeccccccCCCCCCCCCCeeECCCccCCHHHHHHHHHHHHHHHHH
Confidence 34555433344 357764 66688767677778889999999999999999999999878999998887788999999
Q ss_pred HHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCCCC
Q psy13615 220 KMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGDP 263 (263)
Q Consensus 220 ~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~gdp 263 (263)
.|.++++.|.|+++++++.+ ..|+.++|+|+|+|+|
T Consensus 256 ~l~~~g~~~~G~~~ve~~~~--------~~g~~viEiN~R~g~~ 291 (424)
T 2yw2_A 256 GLKEEGIYYRGFLYAGLMIT--------KEGPKVLEFNVRLGDP 291 (424)
T ss_dssp HHHHHTCCCEEEEEEEEEEE--------TTEEEEEEEESSCCTT
T ss_pred HHHHcCCCceeEEEEEEEEe--------CCCcEEEEEecCCCCc
Confidence 99999999999999999954 3445688999999986
No 29
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A*
Probab=99.05 E-value=1.6e-10 Score=108.10 Aligned_cols=112 Identities=40% Similarity=0.608 Sum_probs=91.2
Q ss_pred CcEEEEecCCCCCccccceeEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHH
Q psy13615 140 GDVVIALPSSGIHSNGFSLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIK 219 (263)
Q Consensus 140 g~~ii~Lp~~G~~~~g~Sl~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~ 219 (263)
+.++|+-.-.| .++++. ++.+|..+.+++.+++|+++++.+.++++|+|+.++|.+.++++..+++.+++..++++
T Consensus 180 ~~~lvEe~i~g---~E~sv~-~~~dG~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~~~~~~~~~~~~~~~~~ 255 (422)
T 2xcl_A 180 ASVVIEEYLSG---EEFSLM-AFVKGEKVYPMVIAQDHKRAFDGDKGPNTGGMGAYSPVPQISEETVRHAVETIVKPAAK 255 (422)
T ss_dssp SSEEEEECCCS---EEEEEE-EEEETTEEEECCCBEEEEEEEGGGEEEEEEEEEEEESCTTSCHHHHHHHHHHTHHHHHH
T ss_pred CeEEEEECCcC---cEEEEE-EEEcCCEEEecceeeeeehhcCCCCCCCCCCCeeEccCCCCCHHHHHHHHHHHHHHHHH
Confidence 34555433344 357764 66688766667778888999999999999999999999878999999888789999999
Q ss_pred HHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCCCC
Q psy13615 220 KMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGDP 263 (263)
Q Consensus 220 ~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~gdp 263 (263)
.|.++++.|.|+++++++.+ ..|+.++|+|+|+|+|
T Consensus 256 ~l~~~g~~~~G~~~vd~~~~--------~~g~~viEiN~R~g~~ 291 (422)
T 2xcl_A 256 AMVQEGRSFTGVLYAGLMLT--------ENGSKVIEFNARFGDP 291 (422)
T ss_dssp HHHHTTCCCEEEEEEEEEEE--------TTEEEEEEEESSCCTT
T ss_pred HHHHcCCCcEEEEEeeEEEe--------CCCcEEEEEecCCCCc
Confidence 99999999999999999954 3445788999999986
No 30
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A
Probab=99.04 E-value=3.7e-10 Score=106.98 Aligned_cols=112 Identities=38% Similarity=0.621 Sum_probs=91.0
Q ss_pred CcEEEEecCCCCCccccceeEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHH
Q psy13615 140 GDVVIALPSSGIHSNGFSLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIK 219 (263)
Q Consensus 140 g~~ii~Lp~~G~~~~g~Sl~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~ 219 (263)
+.++|+-.-.| .++++. ++.+|..+.+++.+++|+++++.+.++++|+|+.++|.+.++++..+++.+++..++++
T Consensus 201 ~~~lvEe~i~G---~E~sv~-~~~dG~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~~~~~~~~~~~~~~~~~ 276 (451)
T 2yrx_A 201 SQVVIEEYLEG---EEFSFM-AFVNGEKVYPLAIAQDHKRAYDGDEGPNTGGMGAYSPVPQISDEMMDAALEAILRPAAK 276 (451)
T ss_dssp CCEEEEECCCS---EEEEEE-EEEETTEEEECCCBEECCEEETTTEEEECSCSEEEESCTTSCHHHHHHHHHHTHHHHHH
T ss_pred CeEEEEECCcC---cEEEEE-EEEcCCEEEEeeeEEeccccccCCCCCCCCCCeEEccCCCCCHHHHHHHHHHHHHHHHH
Confidence 34555433344 357764 66688766677778888999999999999999999999878999988887788999999
Q ss_pred HHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCCCC
Q psy13615 220 KMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGDP 263 (263)
Q Consensus 220 ~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~gdp 263 (263)
.|...++.|.|+++++++.+ ..|+.++|+|+|+|+|
T Consensus 277 ~l~~~g~~~~G~~~ve~~~~--------~~g~~viEiN~R~g~~ 312 (451)
T 2yrx_A 277 ALAAEGRPFLGVLYAGLMAT--------ANGPKVIEFNARFGDP 312 (451)
T ss_dssp HHHHTTCCCEEEEEEEEEEE--------TTEEEEEEEESSCCTT
T ss_pred HHHHcCCCceeEEEEEEEEe--------CCCcEEEEEecCCCCc
Confidence 99999999999999999954 4455788999999986
No 31
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens}
Probab=99.03 E-value=2.6e-10 Score=107.91 Aligned_cols=111 Identities=45% Similarity=0.711 Sum_probs=91.3
Q ss_pred cEEEEecCCCCCccccceeEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHHH
Q psy13615 141 DVVIALPSSGIHSNGFSLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKK 220 (263)
Q Consensus 141 ~~ii~Lp~~G~~~~g~Sl~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~~ 220 (263)
.++|+-.-.| .++++. ++.+|+.+..++..++|++.++.+.++++|+|+.++|.+.++++..+++.+++..++++.
T Consensus 208 ~~lvEe~i~G---~E~sv~-~~~dG~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~~~~~~a~~~~~~ 283 (452)
T 2qk4_A 208 TIVIEELLDG---EEVSCL-CFTDGKTVAPMPPAQDHKRLLEGDGGPNTGGMGAYCPAPQVSNDLLLKIKDTVLQRTVDG 283 (452)
T ss_dssp CEEEEECCCS---EEEEEE-EEECSSCEEECCCBEEEEEEETTTEEEEEEEEEEEESCTTCCHHHHHHHHHHTHHHHHHH
T ss_pred eEEEEECCCC---CeEEEE-EEECCCEEEEcceeeecccccCCCCCCCCCCceeeccCccCCHHHHHHHHHHHHHHHHHH
Confidence 4555433344 357764 566877677788888899999999999999999999999889999988877889999999
Q ss_pred HHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCCCC
Q psy13615 221 MIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGDP 263 (263)
Q Consensus 221 ~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~gdp 263 (263)
|..+++.|.|+++++++.+ ..|+.++|+|+|+|+|
T Consensus 284 l~~~g~~~~G~~~ve~~~~--------~~g~~viEiN~R~~~~ 318 (452)
T 2qk4_A 284 MQQEGTPYTGILYAGIMLT--------KNGPKVLEFNCRFGDP 318 (452)
T ss_dssp HHHTTCCCCEEEEEEEEEE--------TTEEEEEEEESSCCTT
T ss_pred HHHcCCCceeEEEEEEEEe--------CCCcEEEEEeccCCCc
Confidence 9999999999999999944 4456789999999986
No 32
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus}
Probab=99.03 E-value=7.7e-10 Score=103.44 Aligned_cols=111 Identities=35% Similarity=0.562 Sum_probs=90.2
Q ss_pred CcEEEEecCCCCCccccceeEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHH
Q psy13615 140 GDVVIALPSSGIHSNGFSLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIK 219 (263)
Q Consensus 140 g~~ii~Lp~~G~~~~g~Sl~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~ 219 (263)
+.++|+-.-.| .++++. ++.+|+.+..+++.++|++.++.+.++++|+|+.++|.+ ++++..+++.+.+..++++
T Consensus 175 ~~~lvEe~i~g---~E~sv~-~~~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~-l~~~~~~~~~~~~~~~~~~ 249 (417)
T 2ip4_A 175 GEVVVEEYLEG---EEATVL-ALTDGETILPLLPSQDHKRLLDGDQGPMTGGMGAVAPYP-MDEATLRRVEEEILGPLVR 249 (417)
T ss_dssp CCEEEEECCCS---CEEEEE-EEESSSCEEECCCBEECCEEETTTEEEECSCSEEEESCC-CCHHHHHHHHHHTHHHHHH
T ss_pred CeEEEEECccC---cEEEEE-EEEeCCEEEEcchheechhhccCCCCCcCCCCeeeeCCC-CCHHHHHHHHHHHHHHHHH
Confidence 44555433344 357764 666877677777788899999999999999999999998 7888888887788899999
Q ss_pred HHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCCCC
Q psy13615 220 KMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGDP 263 (263)
Q Consensus 220 ~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~gdp 263 (263)
.|.+.|+.|.|+++++++.+. .|+.++|+|+|+|+|
T Consensus 250 ~l~~~g~~~~G~~~ve~~~~~--------~g~~viEiN~R~g~~ 285 (417)
T 2ip4_A 250 GLRAEGVVYRGVVYAGLMLTR--------EGPKVLEFNARFGDP 285 (417)
T ss_dssp HHHHTTCCCCEEEEEEEEECS--------SCEEEEEEESSCCTT
T ss_pred HHHHcCCCceEEEEEEEEEeC--------CCeEEEEEecCCCCc
Confidence 999999999999999999554 345688999999986
No 33
>1zgh_A Methionyl-tRNA formyltransferase; southeast collaboratory FO structural genomics, PSI, protein structure initiative, secsg; 2.05A {Clostridium thermocellum} SCOP: b.46.1.1 c.65.1.1
Probab=98.93 E-value=5e-11 Score=106.26 Aligned_cols=84 Identities=19% Similarity=0.075 Sum_probs=66.7
Q ss_pred cCCCcEEEeeeeeE----EeecCCcCCccccccCCcEEEEecCCCCCccccce-eEEEecCcceeecCCccccccccCCC
Q psy13615 110 YQPGDYDLAGFAVG----AVEKASLLPKVKDVAAGDVVIALPSSGIHSNGFSL-VLCFTDGKTVKVMPPSQDHKRKYNND 184 (263)
Q Consensus 110 ~~~d~i~LAG~m~~----~~~~~~~in~hpsl~~g~~ii~Lp~~G~~~~g~Sl-~~ai~dg~~~~~~~~t~dhkr~~~~d 184 (263)
+++|++++||||+. +++...++|+|||+ ||. ++|.++ +|++.+| .+.+|+| .| +.|
T Consensus 76 ~~pDliv~~~y~~ilp~~il~~~g~iNiHpSL--------LP~----yRG~~pi~~Ai~~G--~~~tGvT-ih----~~~ 136 (260)
T 1zgh_A 76 INPEYILFPHWSWIIPKEIFENFTCVVFHMTD--------LPF----GRGGSPLQNLIERG--IKKTKIS-AI----KVD 136 (260)
T ss_dssp HCCSEEEESSCCSCCCHHHHTTSCEEEEESSC--------TTT----TEESCHHHHHHHTT--CCEEEEE-EE----ECC
T ss_pred cCCCEEEEeccccccCHHHHccCCEEEEeCCc--------CCC----CCCcCHHHHHHHcC--CCcEEEE-EE----EEc
Confidence 78999999999984 23345689999999 998 344444 5567766 4569999 46 999
Q ss_pred CCCCCCCeeEECcccCCCHHHHHHHHHHHH
Q psy13615 185 KGPNTGGMGAYCPCDILTEAQKKEIHDTIL 214 (263)
Q Consensus 185 ~G~dTGgmga~~pv~i~~~~~~~~i~~~il 214 (263)
+|.|||+|.+|.++|+. |+.+++.+++.
T Consensus 137 ~~lDtG~Ii~Q~~v~I~--dt~~~L~~rl~ 164 (260)
T 1zgh_A 137 GGIDTGDIFFKRDLDLY--GTAEEIFMRAS 164 (260)
T ss_dssp SSSSCSCEEEEEEEECC--SCHHHHHHHHH
T ss_pred cCccCCCeEEEEEEecc--CCHHHHHHHHH
Confidence 99999999999999986 78888877654
No 34
>3p4e_A Phosphoribosylformylglycinamidine cyclo-ligase; structural genomics, center for structural genomics of infec diseases, csgid; HET: AMP CIT; 1.77A {Vibrio cholerae} PDB: 1cli_A
Probab=98.80 E-value=1.1e-09 Score=101.30 Aligned_cols=134 Identities=38% Similarity=0.590 Sum_probs=107.3
Q ss_pred EEEEEcCcchhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCC--HHHHHHHHHHh--cc
Q psy13615 13 VAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLI--LSNSLQVMQKV--GA 88 (263)
Q Consensus 13 iavl~SG~Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~--~~~~~~i~~~l--~~ 88 (263)
+++-.-+-|+.|.... .......++.+.+++..|+-.|.|.+ |.++++...+++ .+..+++++++ +|
T Consensus 64 lv~~tD~~g~~~~~a~--~~~~~~~iG~~aVa~~vsDiaamGA~-------P~~~l~~l~~~~~~~~~l~~i~~Gi~~~~ 134 (349)
T 3p4e_A 64 LVSGTDGVGTKLRLAL--DMKKHDTIGIDLVAMCVNDLIVQGAE-------PLFFLDYYATGKLDVDTAAEVISGIADGC 134 (349)
T ss_dssp EEEEEECCTHHHHHHH--HTTCCSSHHHHHHHHHHHHHHTTTCE-------EEEEEEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCCcchhHHH--hcCCHHHHHHHHHHHHHHHHHHcCCc-------HHHHHHhhcCCCCCHHHHHHHHHHHHHHH
Confidence 3334445588886443 12234456778888999998899888 999988766543 37888899988 77
Q ss_pred ccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEEeecCCcCCccccccCCcEEEEecCCCCCcccccee
Q psy13615 89 KYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKDVAAGDVVIALPSSGIHSNGFSLV 159 (263)
Q Consensus 89 ~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~~~~~~~in~hpsl~~g~~ii~Lp~~G~~~~g~Sl~ 159 (263)
++ ++|.++||+|+..|+.|....+.++||+.|++++.+++.. ...++||+|+.+.+.|.|+.|+++.
T Consensus 135 ~~---~g~~lvGGdT~~~~~~~~~~~~~l~gt~vG~v~~~~~~~~-~~a~~GD~Ii~tg~~G~~~~g~~l~ 201 (349)
T 3p4e_A 135 LQ---AGCALIGGETAEMPGMYEGEDYDVAGFCVGVVEKEEIIDG-SKVQVGDALIAVGSSGPHSNGYSLV 201 (349)
T ss_dssp HH---HTCEEEEEEEEECBTTBCTTCEEEEEEEEEEEEGGGCCCS-TTCCTTCEEEEEECSSSTTSSHHHH
T ss_pred HH---cCCEEEcceeEECCCcccCCcccEEEEEEEEEcCcccccC-CCCCCCCEEEEcCCcchhhhHHHHH
Confidence 88 9999999999999999988888999999999987777776 6678999999999999999887763
No 35
>3m84_A Phosphoribosylformylglycinamidine cyclo-ligase; alpha-beta fold, csgid, ATP-binding, nucleotide-BIND purine biosynthesis; HET: MSE AMP TRS; 1.70A {Francisella tularensis subsp} PDB: 3qty_A*
Probab=98.78 E-value=1e-09 Score=101.50 Aligned_cols=135 Identities=27% Similarity=0.479 Sum_probs=108.1
Q ss_pred EEEEEcCcchhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCC--HHHHHHHHHHh--cc
Q psy13615 13 VAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLI--LSNSLQVMQKV--GA 88 (263)
Q Consensus 13 iavl~SG~Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~--~~~~~~i~~~l--~~ 88 (263)
+++-.-+-|+++.-.. ....+..++.+.+++..|+-.|.|.+ |.++++...+++ .+..+++++++ +|
T Consensus 63 lv~stD~~~~k~~~a~--~~~~~~~iG~~ava~~vsDiaamGA~-------P~~~l~~l~~~~~~~~~l~~i~~Gi~~~~ 133 (350)
T 3m84_A 63 LVQSIDGVGTKTKVAV--MCGKFENLGYDLFSAATNDIVVMGAK-------PITFLDYVAHDKLDPAIMEELVKGMSKAC 133 (350)
T ss_dssp EEEEEECCTTHHHHHH--HHTCCHHHHHHHHHHHHHHHHTTTCE-------EEEEEEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEEEcCcCCchHHHHH--HhCCHHHHHHHHHHHHHHHHHHcCCc-------HHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 4555556688875433 11233345677888888998888888 999988766653 37888999998 78
Q ss_pred ccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEEeecCCcCCccccccCCcEEEEecCCCCCccccceeE
Q psy13615 89 KYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKDVAAGDVVIALPSSGIHSNGFSLVL 160 (263)
Q Consensus 89 ~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~~~~~~~in~hpsl~~g~~ii~Lp~~G~~~~g~Sl~~ 160 (263)
++ ++|.++||+|+..|+.|....+.++|++.|++++.+++.. ...++||+|+.+.+.|.|+.++++.+
T Consensus 134 ~~---~g~~lvGGdT~~~p~~~~~~~~~l~gt~vG~v~~~~~l~~-~~a~~GD~Ii~tg~~G~~~~g~~l~r 201 (350)
T 3m84_A 134 AE---CGVSLVGGETAEMPGVYQAGEIDMVGVITGIVDRKRIING-ENIKEGDIVFGLSSSGLHTNGYSFAR 201 (350)
T ss_dssp HH---TTCEEEEEEEEECTTTBCTTCEEEEEEEEEEEEGGGCCCS-TTCCTTCEEEEEECSSSTTSSHHHHH
T ss_pred HH---hCCeEEeeeeeEcCCcccCCcccEEEEEEEEEeCCccccc-ccCCCCCEEEEecCchHHHHHHHHHH
Confidence 88 9999999999999999988888999999999987777776 66789999999999999998887643
No 36
>2btu_A Phosphoribosyl-aminoimidazole synthetase; synthase, PURM, de novo purine biosynthesis, AIR synthase family, spine, FGAR amidotransferase; 2.31A {Bacillus anthracis}
Probab=98.35 E-value=8.8e-08 Score=88.10 Aligned_cols=131 Identities=37% Similarity=0.597 Sum_probs=99.2
Q ss_pred EcCcchhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCC--HHHHHHHHHHh--ccccCC
Q psy13615 17 ISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLI--LSNSLQVMQKV--GAKYSD 92 (263)
Q Consensus 17 ~SG~Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~--~~~~~~i~~~l--~~~~~~ 92 (263)
..+-|+++.-..+ ......++.+.+++..|+-.|.|.+ |.++++...+++ .+..+++++++ +|++
T Consensus 61 tD~~~~~~~~~~~--~~~~~~iG~~ava~~vsDi~a~Ga~-------P~~~l~~l~~~~~~~~~l~~i~~Gi~~~~~~-- 129 (346)
T 2btu_A 61 TDGVGTKLMLAFM--ADKHDTIGIDAVAMCVNDIVVQGAE-------PLFFLDYIACGKAEPSKIENIVKGISEGCRQ-- 129 (346)
T ss_dssp EEECCTTHHHHHH--HCCCSSHHHHHHHHHHHHHHTTTCE-------EEEEEEEEEESSCCHHHHHHHHHHHHHHHHH--
T ss_pred cccCCchHHHHHH--hcCcchHHHHHHHHHHHHHHHcCCC-------hHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH--
Confidence 3344666543331 1223445567777777887788877 998888766543 37788888888 7787
Q ss_pred CCceeeeccccccCCCCcCCCcEEEeeeeeEEeecCCcCCccccccCCcEEEEecCCCCCccccceeE
Q psy13615 93 IAPFSQDGGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKDVAAGDVVIALPSSGIHSNGFSLVL 160 (263)
Q Consensus 93 ~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~~~~~~~in~hpsl~~g~~ii~Lp~~G~~~~g~Sl~~ 160 (263)
++|.++||+|...|++|+.+-+.+++++.|++++.+++.. ...++||+|+.+.+.|.|+.|+++.+
T Consensus 130 -~g~~lvGGdt~~~~~~y~~~~~~i~~t~vG~v~~~~~~~~-~~a~~GD~ii~~g~~G~~~~g~~l~~ 195 (346)
T 2btu_A 130 -AGCALIGGETAEMPGMYSTEEYDLAGFTVGIVDKKKIVTG-EKIEAGHVLIGLASSGIHSNGYSLVR 195 (346)
T ss_dssp -HTCEEEEEEEEECSTTSCSSCEEEEEEEEEEEETTSCCCS-TTCCTTCEEEEEECSSSTTSCHHHHH
T ss_pred -hCCeEeeeEEEEcCCcccCCCccEEEEEEEEEccccccCc-cCCCCCCEEEEECCchhhhhHHHHHH
Confidence 9999999999999999987778899999998887677665 45679999999999999998876543
No 37
>2z01_A Phosphoribosylformylglycinamidine cyclo-ligase; alpha and beta proteins, cytoplasm, purine biosynthesis, structural genomics, NPPSFA; 2.20A {Geobacillus kaustophilus}
Probab=98.27 E-value=1.4e-07 Score=86.76 Aligned_cols=134 Identities=39% Similarity=0.589 Sum_probs=93.1
Q ss_pred EEEEEcCcchhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCC--HHHHHHHHHHh--cc
Q psy13615 13 VAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLI--LSNSLQVMQKV--GA 88 (263)
Q Consensus 13 iavl~SG~Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~--~~~~~~i~~~l--~~ 88 (263)
+++-..+-|+++.-... ......++...+++..|+-.|.|.+ |.++++...+++ .+..+++++++ +|
T Consensus 59 lv~stD~~~~~~~~~~~--~~~~~~iG~~ava~~vsDlaa~Ga~-------P~~~~~~l~~~~~~~~~l~~i~~Gi~~~~ 129 (348)
T 2z01_A 59 LISGTDGVGTKLKLAFL--LDRHDTIGIDCVAMCVNDIIVQGAE-------PLFFLDYIACGKAVPEKIAAIVKGVADGC 129 (348)
T ss_dssp EEEEEEECCTHHHHHHH--HTCCSSHHHHHHHHHHHHHHTTTCE-------EEEEEEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred eeeecccccchHHHHHH--hCCHHHHHHHHHHHHHHHHHhcCCC-------hHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 44444444776543221 1233445667777778887788877 988887765543 37788888888 77
Q ss_pred ccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEEeecCCcCCccccccCCcEEEEecCCCCCcccccee
Q psy13615 89 KYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKDVAAGDVVIALPSSGIHSNGFSLV 159 (263)
Q Consensus 89 ~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~~~~~~~in~hpsl~~g~~ii~Lp~~G~~~~g~Sl~ 159 (263)
++ ++|.++||+|...|++|+.+-+.+++++.|.+++.+++.. ...++||+|+.+.+.|.|+.++++.
T Consensus 130 ~~---~g~~lvGGdt~~~~~~y~~~~~~i~~t~vG~v~~~~~l~~-~~a~~GD~ii~~g~~G~~~~g~~l~ 196 (348)
T 2z01_A 130 VE---AGCALIGGETAEMPGMYDEDEYDLAGFAVGVAEKERLITG-ETIQAGDALVGLPSSGLHSNGYSLV 196 (348)
T ss_dssp HH---HTCEEEECCEEC--------CEEEEEEEEEEEEGGGCCCS-TTCCTTCEEEEEECSSSTTSCHHHH
T ss_pred HH---cCCEEECceeeecCCcccCCCeeEEEEEEEEEccccccCc-cCCCCCCEEEEECCchHHHhHHHHH
Confidence 87 9999999999999999988778899999998886666665 4567999999998899998887654
No 38
>2v9y_A Phosphoribosylformylglycinamidine cyclo-ligase; multifunctional enzyme, structural genomics consortium, nucleotide-binding, purine biosynthesis; 2.10A {Homo sapiens}
Probab=98.22 E-value=3.2e-07 Score=84.18 Aligned_cols=131 Identities=41% Similarity=0.645 Sum_probs=98.7
Q ss_pred EcCcchhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCC--HHHHHHHHHHh--ccccCC
Q psy13615 17 ISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLI--LSNSLQVMQKV--GAKYSD 92 (263)
Q Consensus 17 ~SG~Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~--~~~~~~i~~~l--~~~~~~ 92 (263)
..+.++++.-.... .....++...+++..|+-.|.|.+ |.++++...+.+ .+..+++++++ +|++
T Consensus 33 ~D~~v~~~~~a~~~--d~~~~iG~~ava~~vsDiaamGA~-------P~~~l~~l~~~~~~~~~l~~i~~Gi~~~~~~-- 101 (334)
T 2v9y_A 33 TDGVGTKLKIAQLC--NKHDTIGQDLVAMCVNDILAQGAE-------PLFFLDYFSCGKLDLSVTEAVVAGIAKACGK-- 101 (334)
T ss_dssp EECCTTHHHHHHHH--TCCTTHHHHHHHHHHHHHHTTTCE-------EEEEEEEEEESSCCHHHHHHHHHHHHHHHHH--
T ss_pred cCcCCcchhhheec--CCHHHHHHHHHHHHHHHHHHCCCc-------HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH--
Confidence 33446665433221 123445667777888888888877 998888655543 37788899988 7787
Q ss_pred CCceeeeccccccCCCCcCCCcEEEeeeeeEEeecCCcCCccccccCCcEEEEecCCCCCcccccee
Q psy13615 93 IAPFSQDGGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKDVAAGDVVIALPSSGIHSNGFSLV 159 (263)
Q Consensus 93 ~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~~~~~~~in~hpsl~~g~~ii~Lp~~G~~~~g~Sl~ 159 (263)
++|.++||+|.+.|++|....+++++++.|++++.+++..+...++||+|+...+.|.|+.++++.
T Consensus 102 -~g~~lvGGdT~~~~~~y~~~~~~i~~t~vG~v~~~~~~~~~~~a~~GD~Ii~~g~~G~~~~g~~~~ 167 (334)
T 2v9y_A 102 -AGCALLGGETAEMPDMYPPGEYDLAGFAVGAMERDQKLPHLERITEGDVVVGIASSGLHSNGFSLV 167 (334)
T ss_dssp -HTCEEEEEEEEECTTTSCTTCEEEEEEEEEEEEGGGCSCCGGGCCTTCEEEEEECSSSTTSSHHHH
T ss_pred -hCCeEEeEEeEEcCCcccCCceeEEEEEEEEEccccccccccCCCCCCEEEEECCccHHHHHHHHH
Confidence 999999999999999998888889999999888666665423468999999998899998877653
No 39
>3vti_C Hydrogenase maturation factor; transferase, carbamoyltransfer, maturation of [NIFE]-hydroge nitrIle synthesis, iron; 2.56A {Thermoanaerobacter tengcongensis}
Probab=97.46 E-value=1.4e-05 Score=72.44 Aligned_cols=104 Identities=15% Similarity=0.149 Sum_probs=76.3
Q ss_pred EEEEEecCCCChhhHHHHHcCCCEEEeeCCCCC---CHHHHHHHHHHh--ccccCCCCceeeeccccccCCCCcCCCcEE
Q psy13615 42 IVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTL---ILSNSLQVMQKV--GAKYSDIAPFSQDGGETAELPGLYQPGDYD 116 (263)
Q Consensus 42 iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~---~~~~~~~i~~~l--~~~~~~~~~~~~~gge~~~l~~~~~~d~i~ 116 (263)
.+++..|+-.|.|.+ |.++.+...+. +.+..+++++++ +|++ +++.++||+|...|+. ..|...
T Consensus 53 ava~~~sDiaamGA~-------P~~~~~~l~~p~~~~~~~l~~i~~Gi~~~~~~---~g~~lvGGdt~~~~~g-~~~~~~ 121 (314)
T 3vti_C 53 AVCGTVNDASMRGAK-------PLFLTAAFIIEEGFPVEDLKKIVKSMAEAAKE---AGVKIVAGDTKVVEKG-SVDRIF 121 (314)
T ss_dssp HHHHHHHHTTTTTEE-------EEEEEEEEEEETTCCHHHHHHHHHHHHHHHHH---HTCEEEEEEEEEECTT-SBSSEE
T ss_pred HHHHHHHHHHHcCCc-------cceeEEEEEcCCCCCHHHHHHHHHHHHHHHHH---cCCeEEeeeeEEccCC-CcCCeE
Confidence 344455566667766 88777654332 347888889988 7777 9999999999998731 234577
Q ss_pred EeeeeeEEeecCCcCCccccccCCcEEEEecCCCCCccccc
Q psy13615 117 LAGFAVGAVEKASLLPKVKDVAAGDVVIALPSSGIHSNGFS 157 (263)
Q Consensus 117 LAG~m~~~~~~~~~in~hpsl~~g~~ii~Lp~~G~~~~g~S 157 (263)
+++++.|++++.+++.. ...++||+|+...+.|.|+.+++
T Consensus 122 i~~t~vG~v~~~~~~~~-~~a~~GD~i~~tg~~G~~~~~~~ 161 (314)
T 3vti_C 122 INTSGIGVLYEGANVSI-KNAKPGDIVLISGTIGDHGMAVM 161 (314)
T ss_dssp EEEEEEEEECTTCCCCT-TCCCTTCEEEESSCSSHHHHHHH
T ss_pred EEEEEEEEECCCccccc-cCCCCCCEEEEECChHHHHHHHH
Confidence 88889998886666665 55789999999988888865544
No 40
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=97.39 E-value=0.00018 Score=67.01 Aligned_cols=87 Identities=8% Similarity=0.012 Sum_probs=53.1
Q ss_pred cccceeEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEe
Q psy13615 154 NGFSLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKK 233 (263)
Q Consensus 154 ~g~Sl~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~ 233 (263)
.++++. .+.++.++...|++..+.+ .|. -.....|.+.++++..+++. ++..++++.| .|.|++.
T Consensus 208 ~E~sv~-v~~~~~g~~~~p~~~~~~~-----~g~---~~~~~~Pa~~l~~~~~~~~~-~~a~~i~~~L-----g~~G~~~ 272 (403)
T 3k5i_A 208 MELAVI-VVKTKDEVLSYPTVETVQE-----DSI---CKLVYAPARNVSDAINQKAQ-ELARKAVAAF-----DGKGVFG 272 (403)
T ss_dssp EEEEEE-EEECSSCEEECCCEEEEEE-----TTE---EEEEEESCSSCCHHHHHHHH-HHHHHHHHTS-----CCSEEEE
T ss_pred eEEEEE-EEEcCCCEEEeCCeeeEEe-----CCE---EEEEEeCCCCCCHHHHHHHH-HHHHHHHHHc-----CCeeEEE
Confidence 456663 5555555556666532211 011 12356677756787777774 4554554444 5799999
Q ss_pred eccccccCCceeeecCcceeeeeCCCCCC
Q psy13615 234 RGFTEGTVTAKVFSSRNRREKEDNPEEGD 262 (263)
Q Consensus 234 ~gl~~~~~~~~~~~~~~~~~~e~n~~~gd 262 (263)
+.++.+..+ .+.++|+|+|+|+
T Consensus 273 ve~~~~~dg-------~~~v~EiNpR~~~ 294 (403)
T 3k5i_A 273 VEMFLLEDD-------SIMLCEIASRIHN 294 (403)
T ss_dssp EEEEEETTS-------CEEEEEEESSCCG
T ss_pred EEEEEeCCC-------cEEEEEeecCCCC
Confidence 999954322 1568999999986
No 41
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus}
Probab=97.31 E-value=0.00048 Score=62.77 Aligned_cols=99 Identities=14% Similarity=0.118 Sum_probs=66.2
Q ss_pred CcEEEEecCCCCCccccceeEEEecCcc-eeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHH
Q psy13615 140 GDVVIALPSSGIHSNGFSLVLCFTDGKT-VKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVI 218 (263)
Q Consensus 140 g~~ii~Lp~~G~~~~g~Sl~~ai~dg~~-~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i 218 (263)
..++|+-.-.+ +.++++. .+.++++ +..++++++|++....+ ..++|.+.++++..+++ .++..+++
T Consensus 167 ~~~lvEe~i~~--g~e~sv~-~~~d~~G~~~~~~~~~~~~~~~~~~--------~~~~p~~~l~~~~~~~~-~~~a~~~~ 234 (369)
T 3aw8_A 167 RGLILEGFVPF--DREVSLL-AVRGRTGEVAFYPLVENRHWGGILR--------LSLAPAPGASEALQKKA-EAYALRAM 234 (369)
T ss_dssp SSEEEEECCCC--SEEEEEE-EEECTTSCEEECCCEEEEEETTEEE--------EEEESCTTCCHHHHHHH-HHHHHHHH
T ss_pred CcEEEEEcCCC--CEEEEEE-EEECCCCCEEEECCeeeeeeCCEEE--------EEECCCCCCCHHHHHHH-HHHHHHHH
Confidence 44555433331 3457764 6676553 55678877665432221 36778876788888888 57777777
Q ss_pred HHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCCCC
Q psy13615 219 KKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGDP 263 (263)
Q Consensus 219 ~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~gdp 263 (263)
++| .|+|+++++++.+. .++.++|+|+|+|++
T Consensus 235 ~~l-----g~~G~~~vd~~~~~--------~~~~viEiN~R~~~~ 266 (369)
T 3aw8_A 235 EAL-----DYVGVLALEFFQVG--------EELLFNEMAPRVHNS 266 (369)
T ss_dssp HHH-----TCCEEEEEEEEEET--------TEEEEEEEESSCCGG
T ss_pred HHC-----CCeeEEEEEEEEEC--------CcEEEEEEeCCcCCc
Confidence 777 46899999999543 345789999999864
No 42
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}
Probab=97.13 E-value=0.00077 Score=61.65 Aligned_cols=99 Identities=12% Similarity=0.052 Sum_probs=61.5
Q ss_pred CcEEEEecCCCCCccccceeEEEecCcc-eeecCCcccc--ccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHHHHHH
Q psy13615 140 GDVVIALPSSGIHSNGFSLVLCFTDGKT-VKVMPPSQDH--KRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMR 216 (263)
Q Consensus 140 g~~ii~Lp~~G~~~~g~Sl~~ai~dg~~-~~~~~~t~dh--kr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~ 216 (263)
+.++|+-.-.+ +.++++. .+.++++ +..++++++| ++.+.. -..++|.+ ++++..+++ .++..+
T Consensus 164 ~~~lvEe~i~~--g~e~sv~-~~~~~~G~~~~~~~~~~~~~~~~~~~--------~~~~~p~~-l~~~~~~~~-~~~a~~ 230 (380)
T 3ax6_A 164 GETYLEEFVEI--EKELAVM-VARNEKGEIACYPVVEMYFDEDANIC--------DTVIAPAR-IEEKYSKIA-REIATS 230 (380)
T ss_dssp SSEEEEECCCE--EEEEEEE-EEECSSCCEEEEEEEEEC----------------CEEEESCS-SCHHHHHHH-HHHHHH
T ss_pred CCEEEEeccCC--CeeEEEE-EEECCCCCEEEECCeeeeecccCCee--------EEEECCCC-CCHHHHHHH-HHHHHH
Confidence 55666433332 3457764 5665443 4566777655 322111 13567777 677777777 477777
Q ss_pred HHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCCCC
Q psy13615 217 VIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGDP 263 (263)
Q Consensus 217 ~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~gdp 263 (263)
++++| .|.|++.++++.+..+ .+.++|+|+|+|++
T Consensus 231 ~~~~l-----g~~G~~~vd~~~~~~g-------~~~viEiN~R~~~~ 265 (380)
T 3ax6_A 231 VVEAL-----EGVGIFGIEMFLTKQG-------EILVNEIAPRPHNS 265 (380)
T ss_dssp HHHHH-----TCCEEEEEEEEEETTS-------CEEEEEEESSCCGG
T ss_pred HHHHC-----CCeEEEEEEEEEeCCC-------cEEEEEecCCCCCC
Confidence 77777 4689999999954322 15789999999974
No 43
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=97.09 E-value=0.00094 Score=60.69 Aligned_cols=81 Identities=17% Similarity=0.102 Sum_probs=54.7
Q ss_pred ccceeEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEee
Q psy13615 155 GFSLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKR 234 (263)
Q Consensus 155 g~Sl~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~ 234 (263)
++++. .+.|+.+..+++.+++| ..+++++..+.|.+. .++ .+++..++. +.+.|.|++++
T Consensus 167 e~sv~-~~~d~~~~~~~~~~~~~--------~~~~~~~~~~~p~~~-~~~-~~~~a~~~~---------~~l~~~G~~~v 226 (363)
T 4ffl_A 167 VVSLE-VVGDGSHFAVVKETLVH--------IDETYDCHMVTPLPA-NPL-FRQISHDLA---------ANLPLKGIMDV 226 (363)
T ss_dssp EEEEE-EEEESSCEEECCCEEEE--------ECTTSCEEEEEECCC-CHH-HHHHHHHHH---------HTTTCEEEEEE
T ss_pred EEEEE-EEEECCeEEEEEEEEec--------cCCcccceeecchhH-HHH-HHHHHHHHH---------HhCCccceeee
Confidence 46653 77788888778777655 346778888888774 222 222222222 35679999999
Q ss_pred ccccccCCceeeecCcceeeeeCCCCCCC
Q psy13615 235 GFTEGTVTAKVFSSRNRREKEDNPEEGDP 263 (263)
Q Consensus 235 gl~~~~~~~~~~~~~~~~~~e~n~~~gdp 263 (263)
.|+.+ ..++.++|+|+|||++
T Consensus 227 ef~~~--------~~~~~viEiN~R~~g~ 247 (363)
T 4ffl_A 227 EAIFG--------PKGLRVIEIDARFPSQ 247 (363)
T ss_dssp EEEEE--------TTEEEEEEEECSCCSS
T ss_pred eeEEe--------CCeEEEEEEeCCCCCC
Confidence 99954 4456788999999763
No 44
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=96.85 E-value=0.0038 Score=57.96 Aligned_cols=99 Identities=18% Similarity=0.161 Sum_probs=60.9
Q ss_pred cEEEEecCCCCCccccceeEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHHH
Q psy13615 141 DVVIALPSSGIHSNGFSLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKK 220 (263)
Q Consensus 141 ~~ii~Lp~~G~~~~g~Sl~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~~ 220 (263)
.++++-.-.|. ++++. ++.++.....++++..+ ...++....++..+|.+ ++++..+++. ++..++++
T Consensus 194 ~~lvEe~i~G~---e~sv~-~~~~~g~~~~~~~~~~~-----~~~~~~~~~~~~~~Pa~-l~~~~~~~i~-~~~~~~~~- 261 (425)
T 3vot_A 194 GIVAEQFIDGP---EFAIE-TLSIQGNVHVLSIGYKG-----NSKGPFFEEGVYIAPAQ-LKEETRLAIV-KEVTGAVS- 261 (425)
T ss_dssp CEEEEECCCSC---EEEEE-EEEETTEEEEEEEEEEE-----CCCCSBCCCCEEEESCC-CCHHHHHHHH-HHHHHHHH-
T ss_pred cEEEEEEecCc---EEEEE-EEEeCCcEEEEeEEEEe-----ccCCCccccceEeeccc-CCHHHHHHHH-HHHHHHHH-
Confidence 45554433553 46763 55654555566666422 34567777777888887 4666666664 33334444
Q ss_pred HHhcCCCeEEEEeeccccccCCceeeecCc-ceeeeeCCCCCC
Q psy13615 221 MIAEGTPFVGEKKRGFTEGTVTAKVFSSRN-RREKEDNPEEGD 262 (263)
Q Consensus 221 ~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~-~~~~e~n~~~gd 262 (263)
..|+. .|+.+++++.+ ..| +.++|+|+|+|.
T Consensus 262 --alg~~-~G~~~ve~~~~--------~dG~~~~iEiN~R~gG 293 (425)
T 3vot_A 262 --ALGIH-QGPAHTELRLD--------KDGTPYVIEVGARIGG 293 (425)
T ss_dssp --HTTCC-SEEEEEEEEEC--------TTCCEEEEEEESSCGG
T ss_pred --HcCCC-cceEEEEEEEE--------eCCcEEEEEEecCCCC
Confidence 33543 49999999954 444 578899999964
No 45
>2z1u_A Hydrogenase expression/formation protein HYPE; alpha-beta fold, beta barrel, lyase; HET: ATP; 2.00A {Desulfovibrio vulgaris subsp} PDB: 2z1t_A*
Probab=96.84 E-value=0.00029 Score=64.48 Aligned_cols=89 Identities=16% Similarity=0.089 Sum_probs=67.9
Q ss_pred CCEEEeeCCCCCC---HHHHHHHHHHh--ccccCCCCceeeeccccccCCC-CcCCCcEEEeeeeeEEeecCCcCCcccc
Q psy13615 63 IPTKVSTYKHTLI---LSNSLQVMQKV--GAKYSDIAPFSQDGGETAELPG-LYQPGDYDLAGFAVGAVEKASLLPKVKD 136 (263)
Q Consensus 63 IP~~~v~~~~~~~---~~~~~~i~~~l--~~~~~~~~~~~~~gge~~~l~~-~~~~d~i~LAG~m~~~~~~~~~in~hps 136 (263)
-|.++++...+.+ .+..+++++++ +|++ +++.++||+|...|+ .|+ ...+++++.|++++.+.+.. ..
T Consensus 88 ~P~~~~~~l~~p~~~~~~~l~~i~~Gi~~~~~~---~g~~lvGGdt~~~~~g~~~--~~~i~~t~vG~v~~~~~~~~-~~ 161 (343)
T 2z1u_A 88 RPRYLSCGFILEEGLDMDILERVVASMGKAARE---AGVFIVTGDTKVVPRGACD--KMFINTTGIGEILVDPAPSG-DR 161 (343)
T ss_dssp EEEEEEEEEEEETTCCHHHHHHHHHHHHHHHHH---HTCEEEEEEEEEECTTSSS--SEEEEEEEEEEECCSSCCCG-GG
T ss_pred eeHHhheeeecCCCCCHHHHHHHHHHHHHHHHH---hCCEEECcEEEEcCCCCCC--CeEEEEEEEEEECCCccccc-cC
Confidence 4888877765542 37788888888 7777 999999999999873 343 56788889998876666654 45
Q ss_pred ccCCcEEEEecCCCCCccccc
Q psy13615 137 VAAGDVVIALPSSGIHSNGFS 157 (263)
Q Consensus 137 l~~g~~ii~Lp~~G~~~~g~S 157 (263)
.++||+|+.....|.|+.+++
T Consensus 162 a~~GD~I~vtg~~G~~g~~~~ 182 (343)
T 2z1u_A 162 ARPGDAILISGSMGDHGLTIL 182 (343)
T ss_dssp CCTTCEEEECSCSSHHHHHHH
T ss_pred CCCCCEEEEECCccHHHHHHH
Confidence 689999999888888765544
No 46
>2rb9_A HYPE protein; hydrogenase maturation, dimer, enzyme, X- RAY crystallography, structural genomics, BSGI; 2.00A {Escherichia coli O157} PDB: 2i6r_A
Probab=96.70 E-value=0.00045 Score=62.98 Aligned_cols=92 Identities=16% Similarity=0.129 Sum_probs=68.4
Q ss_pred CCCEEEeeCCCCC---CHHHHHHHHHHh--ccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEEeecCCcCCcccc
Q psy13615 62 GIPTKVSTYKHTL---ILSNSLQVMQKV--GAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKD 136 (263)
Q Consensus 62 gIP~~~v~~~~~~---~~~~~~~i~~~l--~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~~~~~~~in~hps 136 (263)
+-|.++++...+. +.+..+++++++ +|++ +++.++||+|...|+- ..+...+++++.|++++.+.+.. ..
T Consensus 87 A~P~~~~~~l~~p~~~~~~~l~~i~~Gi~~~~~~---~g~~lvGGdt~~~~~g-~~~~~~i~~t~vG~v~~~~~~~~-~~ 161 (334)
T 2rb9_A 87 AIPRYLSCGFILEEGLPMETLKAVVTSMAETART---AGIAIVTGDTKVVQRG-AADKLFINTAGMGAIPTNIHWGA-QT 161 (334)
T ss_dssp CCCCEEEEEEEEETTCCHHHHHHHHHHHHHHHHH---TTCEEEEEEEEEECTT-SBSSEEEEEEEEEEECTTCCCCG-GG
T ss_pred CchHHhEEEEecCCCCCHHHHHHHHHHHHHHHHH---cCCEEEeeEeEEccCC-CCCceEEEEEEEEEECccccccc-cc
Confidence 3488887776552 237788888988 7777 9999999999998721 12356788888998876666654 45
Q ss_pred ccCCcEEEEecCCCCCccccce
Q psy13615 137 VAAGDVVIALPSSGIHSNGFSL 158 (263)
Q Consensus 137 l~~g~~ii~Lp~~G~~~~g~Sl 158 (263)
.++||+|+.....|.|+.+++.
T Consensus 162 a~~GD~Iivtg~~G~~g~~~~~ 183 (334)
T 2rb9_A 162 LTAGDILLVSGTLGDHGATILN 183 (334)
T ss_dssp CCTTCEEEESSCSSHHHHHHHH
T ss_pred CCCCCEEEEECCchHHHHHHHH
Confidence 6899999998888888665543
No 47
>3mcq_A Thiamine-monophosphate kinase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PGE PG4 1PE; 1.91A {Methylobacillus flagellatus}
Probab=96.55 E-value=0.0005 Score=62.28 Aligned_cols=86 Identities=13% Similarity=0.029 Sum_probs=66.9
Q ss_pred CCCEEEeeCCCCCC--HHHHHHHHHHh--ccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEEeecCCcCCccccc
Q psy13615 62 GIPTKVSTYKHTLI--LSNSLQVMQKV--GAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKDV 137 (263)
Q Consensus 62 gIP~~~v~~~~~~~--~~~~~~i~~~l--~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~~~~~~~in~hpsl 137 (263)
+-|.++++...+.+ .+..+++++++ +|++ +++.++||+|..- + ..+++++.|++++.+++.. ...
T Consensus 78 a~P~~~l~~l~~p~~~~~~l~~i~~Gi~~~~~~---~g~~lvGGdt~~~-----~--~~i~~t~iG~v~~~~~~~~-~~a 146 (319)
T 3mcq_A 78 AQPRWATLTIALPEADEDWISKFAAGFFACAAQ---FDIALIGGDTTRG-----P--LTISVQIMGETPPGASLLR-STA 146 (319)
T ss_dssp CEEEEEEEEEEESSCCHHHHHHHHHHHHHHHHH---TTCEEEEEEEEES-----S--CEEEEEEEEEECTTCCCCS-SCC
T ss_pred CchHHhEEEEECCCCCHHHHHHHHHHHHHHHHH---cCCeEEeeEcCCC-----C--eEEEEEEEEeeCCCccccc-CCC
Confidence 45888887765543 37888899988 7777 9999999999962 2 5678888888876677766 567
Q ss_pred cCCcEEEEecCCCCCccccce
Q psy13615 138 AAGDVVIALPSSGIHSNGFSL 158 (263)
Q Consensus 138 ~~g~~ii~Lp~~G~~~~g~Sl 158 (263)
++||+|+...+.|.|+.++++
T Consensus 147 ~~GD~ii~tg~~G~~~~g~~~ 167 (319)
T 3mcq_A 147 RADDDIWVSGPLGDAALALAA 167 (319)
T ss_dssp CTTEEEEECSCCSHHHHHHHH
T ss_pred CCCCEEEEECCccHHHHHHHH
Confidence 899999999888888766544
No 48
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=96.33 E-value=0.0081 Score=54.76 Aligned_cols=98 Identities=15% Similarity=0.141 Sum_probs=61.0
Q ss_pred CcEEEEecCCCCCccccceeEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHH
Q psy13615 140 GDVVIALPSSGIHSNGFSLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIK 219 (263)
Q Consensus 140 g~~ii~Lp~~G~~~~g~Sl~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~ 219 (263)
+.++|+-.-.| +.++++. .+.++.+....++. +|++.. .+ ....+.|.+ ++++..+++ .++..++++
T Consensus 189 ~~~lvEe~i~~--g~E~sv~-~~~~~~g~~~~~~~-~~~~~~-~~------~~~~~~p~~-l~~~~~~~~-~~~a~~~~~ 255 (391)
T 1kjq_A 189 GRVIVEGVVKF--DFEITLL-TVSAVDGVHFCAPV-GHRQED-GD------YRESWQPQQ-MSPLALERA-QEIARKVVL 255 (391)
T ss_dssp CCEEEEECCCC--SEEEEEE-EEEETTEEEECCCE-EEEEET-TE------EEEEEECCC-CCHHHHHHH-HHHHHHHHH
T ss_pred CCEEEEEecCC--CeEEEEE-EEEeCCCeEEccCc-ceEEEC-CE------EEEEEeCCC-CCHHHHHHH-HHHHHHHHH
Confidence 34555433332 3457764 66666665555443 454321 11 123556776 577777777 467777777
Q ss_pred HHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCCCC
Q psy13615 220 KMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGDP 263 (263)
Q Consensus 220 ~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~gdp 263 (263)
+| + |.|+.+++++.+. .++.++|+|+|+|++
T Consensus 256 ~l---g--~~G~~~ve~~~~~--------~~~~viEiN~R~~~~ 286 (391)
T 1kjq_A 256 AL---G--GYGLFGVELFVCG--------DEVIFSEVSPRPHDT 286 (391)
T ss_dssp HH---C--SSEEEEEEEEEET--------TEEEEEEEESSCCGG
T ss_pred Hc---C--CeeEEEEEEEEeC--------CcEEEEEEECCCCCC
Confidence 76 3 7999999999543 355789999999964
No 49
>3c9u_A Thiamine monophosphate kinase; beta barrel, alpha-beta structure, transferase; HET: TPP ADP; 1.48A {Aquifex aeolicus} SCOP: d.79.4.1 d.139.1.1 PDB: 3c9r_A* 3c9t_A* 3c9s_A* 1vqv_A
Probab=96.31 E-value=0.00027 Score=64.91 Aligned_cols=85 Identities=18% Similarity=0.239 Sum_probs=64.9
Q ss_pred CCCEEEeeCCCCCC---HHHHHHHHHHh--ccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEEeecCCcCCcccc
Q psy13615 62 GIPTKVSTYKHTLI---LSNSLQVMQKV--GAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKD 136 (263)
Q Consensus 62 gIP~~~v~~~~~~~---~~~~~~i~~~l--~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~~~~~~~in~hps 136 (263)
.-|.++++...+++ .+..+++++++ +|++ +++.++||+|.+.+ ...+++++.|+ +++.+.. ..
T Consensus 113 A~P~~~l~~l~~p~~~~~~~l~~i~~Gi~~~~~~---~gv~lvGGdT~~~~------~~~i~vt~vG~--~~~~l~~-~~ 180 (342)
T 3c9u_A 113 GLPKWALISLNLPEDLEVSYVERFYIGVKRACEF---YKCEVVGGNISKSE------KIGISVFLVGE--TERFVGR-DG 180 (342)
T ss_dssp CEEEEEEEEEEECTTSBHHHHHHHHHHHHHHHHH---HTCEEEEEEEEECS------SCEEEEEEEEE--ESSCCCS-SC
T ss_pred CchHHhEEEEecCCCCCHHHHHHHHHHHHHHHHH---cCCeEEeeEeeecC------CeEEEEEEEEe--cCccccc-cC
Confidence 34888887766653 37788889988 7777 99999999999752 35678888887 3566654 45
Q ss_pred ccCCcEEEEecCCCCCccccce
Q psy13615 137 VAAGDVVIALPSSGIHSNGFSL 158 (263)
Q Consensus 137 l~~g~~ii~Lp~~G~~~~g~Sl 158 (263)
.++||+|+...+.|.|+.|+++
T Consensus 181 a~~GD~IivtG~~G~~~~g~~~ 202 (342)
T 3c9u_A 181 ARLGDSVFVSGTLGDSRAGLEL 202 (342)
T ss_dssp CCTTCEEEEESCSSHHHHHHHH
T ss_pred CCCCCEEEEECchhHHHHHHHH
Confidence 6899999999888988766655
No 50
>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus}
Probab=96.02 E-value=0.0041 Score=56.34 Aligned_cols=84 Identities=17% Similarity=0.097 Sum_probs=49.3
Q ss_pred ccccceeEEEecCcc-eeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEE
Q psy13615 153 SNGFSLVLCFTDGKT-VKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGE 231 (263)
Q Consensus 153 ~~g~Sl~~ai~dg~~-~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~ 231 (263)
+.++++. .+.++++ +..++++++|++....+ ..++|.++ . +++ .++..++++.+ .|.|.
T Consensus 174 g~e~sv~-~~~d~~G~~~~~~~~~~~~~~~~~~--------~~~~p~~~-~----~~~-~~~~~~~~~~l-----g~~G~ 233 (365)
T 2z04_A 174 EAEISCI-GVRDREGKTYFYPQPFNKHEEGILI--------YNYVPYAK-L----KEA-EEITKRLMELL-----DIVGV 233 (365)
T ss_dssp SEEEEEE-EEECTTCCEEECCEEEEEEETTEEE--------EEEEEEEC-C----HHH-HHHHHHHHHHT-----TCCEE
T ss_pred CEEEEEE-EEECCCCCEEEECCEEEEEeCCEeE--------EEECCHhH-H----HHH-HHHHHHHHHHc-----CCEEE
Confidence 3457764 6666553 56778777664421111 24566664 2 222 23333444443 57899
Q ss_pred EeeccccccCCceeeecCcceeeeeCCCCCCC
Q psy13615 232 KKRGFTEGTVTAKVFSSRNRREKEDNPEEGDP 263 (263)
Q Consensus 232 L~~gl~~~~~~~~~~~~~~~~~~e~n~~~gdp 263 (263)
++++++.+..+ .+.++|+|+|+|+|
T Consensus 234 ~~vd~~~~~~g-------~~~~iEiN~R~~~~ 258 (365)
T 2z04_A 234 FTVEFFLLKDG-------RVLINEFAPRVHNT 258 (365)
T ss_dssp EEEEEEECTTS-------CEEEEEEESSCCGG
T ss_pred EEEEEEEeCCC-------cEEEEEeccCcCCC
Confidence 99999955332 15688999999874
No 51
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=95.94 E-value=0.012 Score=54.61 Aligned_cols=57 Identities=18% Similarity=0.255 Sum_probs=42.8
Q ss_pred eeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCCCC
Q psy13615 192 MGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGDP 263 (263)
Q Consensus 192 mga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~gdp 263 (263)
++.+.|.+ ++++..+++ .++..+++++| + |.|+++++++.+. .++.++|+|+|+|++
T Consensus 243 ~~~~~p~~-l~~~~~~~i-~~~a~~~~~~l---g--~~G~~~ve~~~~~--------~~~~viEiN~R~~~~ 299 (433)
T 2dwc_A 243 HASWQPAE-ISEKAEREV-YRIAKRITDVL---G--GLGIFGVEMFVKG--------DKVWANEVSPRPHDT 299 (433)
T ss_dssp EEEEESCC-CCHHHHHHH-HHHHHHHHHHH---C--SSEECEEEEEEET--------TEEEEEEEESSCCGG
T ss_pred EEEEcCCC-CCHHHHHHH-HHHHHHHHHHc---C--CeeEEEEEEEEeC--------CcEEEEEEeCCcCCC
Confidence 55677877 677777777 46777777766 3 7999999999543 355789999999964
No 52
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=95.89 E-value=0.024 Score=52.95 Aligned_cols=97 Identities=14% Similarity=0.113 Sum_probs=59.7
Q ss_pred CcEEEEecCCCCCccccceeEEEecCcc-eeecCCccccccccCCCCCCCCCCe--eEECcccCCCHHHHHHHHHHHHHH
Q psy13615 140 GDVVIALPSSGIHSNGFSLVLCFTDGKT-VKVMPPSQDHKRKYNNDKGPNTGGM--GAYCPCDILTEAQKKEIHDTILMR 216 (263)
Q Consensus 140 g~~ii~Lp~~G~~~~g~Sl~~ai~dg~~-~~~~~~t~dhkr~~~~d~G~dTGgm--ga~~pv~i~~~~~~~~i~~~il~~ 216 (263)
+.++|+-.-.| +.++++. .+.++.+ +..+++++.+.+ .|+ .+++|.+.++++..+++. ++..+
T Consensus 207 ~~~lvEe~i~~--~~Eisv~-v~~~~~G~~~~~~~~e~~~~----------~g~~~~~~~Pa~~l~~~~~~~~~-~~a~~ 272 (419)
T 4e4t_A 207 VPCVLEKRLPL--KYEVSAL-IARGADGRSAAFPLAQNVHH----------NGILALTIVPAPAADTARVEEAQ-QAAVR 272 (419)
T ss_dssp CCEEEEECCCE--EEEEEEE-EEECTTSCEEECCCEEEEEE----------TTEEEEEEESCTTCCHHHHHHHH-HHHHH
T ss_pred CcEEEeecCCC--CeEEEEE-EEEcCCCCEEEEeCeEEEee----------CCeEEEEEcCCCCCCHHHHHHHH-HHHHH
Confidence 34555332232 3456653 5556553 456677653211 122 346677767888877775 56666
Q ss_pred HHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCCC
Q psy13615 217 VIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGD 262 (263)
Q Consensus 217 ~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~gd 262 (263)
++++| .|.|++.+.|+.+..+ .+.|+|+|+|+|+
T Consensus 273 i~~~l-----g~~G~~~vE~~~~~dG-------~~~v~EiNpR~~~ 306 (419)
T 4e4t_A 273 IADTL-----GYVGVLCVEFFVLEDG-------SFVANEMAPRPHN 306 (419)
T ss_dssp HHHHH-----TCCEEEEEEEEEETTC-------CEEEEEEESSCCG
T ss_pred HHHHC-----CCeeEEEEEEEEeCCC-------CEEEEEEeCCCCC
Confidence 66665 4789999999954322 1578999999986
No 53
>2z1e_A Hydrogenase expression/formation protein HYPE; [NIFE] hydrogenase maturation, ATPase, transferase; 1.55A {Thermococcus kodakarensis} SCOP: d.79.4.1 d.139.1.1 PDB: 2z1f_A
Probab=95.41 E-value=0.0044 Score=56.21 Aligned_cols=86 Identities=15% Similarity=0.184 Sum_probs=62.6
Q ss_pred CCCEEEeeCCCCC---CHHHHHHHHHHh--ccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEEeecCCcCCcccc
Q psy13615 62 GIPTKVSTYKHTL---ILSNSLQVMQKV--GAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKD 136 (263)
Q Consensus 62 gIP~~~v~~~~~~---~~~~~~~i~~~l--~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~~~~~~~in~hps 136 (263)
.-|.++.+...+. +.+..+++++++ .|++ +++.++||+|...|+.. .+.+++++.|.+++. . .. ..
T Consensus 90 a~P~~~~~~l~~p~~~~~~~l~~~~~Gi~~~~~~---~g~~lvGGdt~~~~~~~---~~~i~~t~~G~v~~~-~-~~-~~ 160 (338)
T 2z1e_A 90 AEPIALANSMIIGEGLDMEVLKRVLKSMDETARE---VPVPIVTGDTKVVEDKI---EMFVITAGIGIAEHP-V-SD-AG 160 (338)
T ss_dssp CEEEEEEEEEEEETTCCHHHHHHHHHHHHHHHHH---TTCCEEEEEEEEESSSC---CEEEEEEEEEEESSC-C-CT-TC
T ss_pred CchhHhEEEEecCCCCCHHHHHHHHHHHHHHHHH---cCCEEECcEEEEcCCCC---ceEEEEEEEEEECCc-c-Cc-cC
Confidence 3487777765553 337788888888 6777 99999999999987422 566788888887644 2 22 44
Q ss_pred ccCCcEEEEecCCCCCcccc
Q psy13615 137 VAAGDVVIALPSSGIHSNGF 156 (263)
Q Consensus 137 l~~g~~ii~Lp~~G~~~~g~ 156 (263)
.++||+|+.....|.|+.++
T Consensus 161 a~~GD~i~vtg~~G~~g~~~ 180 (338)
T 2z1e_A 161 AKVGDAVLVSGTIGDHGIAL 180 (338)
T ss_dssp CCTTCEEEESSCSSHHHHHH
T ss_pred CCCCCEEEEECCccHHHHHH
Confidence 57999999887778776443
No 54
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=94.93 E-value=0.032 Score=48.64 Aligned_cols=63 Identities=14% Similarity=0.217 Sum_probs=42.8
Q ss_pred CCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCCC
Q psy13615 186 GPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGD 262 (263)
Q Consensus 186 G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~gd 262 (263)
...+|+++...|.+ ++++..+++. ++..++++.+ | +.|...+.++.+..+ .+.++|+|+|+|.
T Consensus 215 ~~~~g~~~~~~p~~-l~~~~~~~i~-~~a~~~~~~l---g--~~G~~~vD~~~~~~g-------~~~~iEiN~rpg~ 277 (306)
T 1iow_A 215 KFLSDETQYFCPAG-LEASQEANLQ-ALVLKAWTTL---G--CKGWGRIDVMLDSDG-------QFYLLEANTSPGM 277 (306)
T ss_dssp HHTCSCCEEESSCC-CCHHHHHHHH-HHHHHHHHHH---T--CCSEEEEEEEECTTS-------CEEEEEEESSCCC
T ss_pred eecCCCeeEEcCCC-CCHHHHHHHH-HHHHHHHHHc---C--CceEEEEEEEEcCCC-------CEEEEEecCCCCC
Confidence 34578888888876 4666666664 4455555554 4 478888999855432 1568899999985
No 55
>3u0o_A Selenide, water dikinase; ATP binding protein, selenophosphate synthesis, transferase; 2.25A {Escherichia coli}
Probab=94.89 E-value=0.014 Score=53.48 Aligned_cols=83 Identities=18% Similarity=0.175 Sum_probs=60.0
Q ss_pred HHcCCCEEEeeCCCCC----CHHHHHHHHHHh--ccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEEeecCCcCC
Q psy13615 59 RNAGIPTKVSTYKHTL----ILSNSLQVMQKV--GAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAVEKASLLP 132 (263)
Q Consensus 59 ~~~gIP~~~v~~~~~~----~~~~~~~i~~~l--~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~~~~~~~in 132 (263)
..-+-|.++++...+. +.+..+++++++ +|++ +++.++||+|...|+. .+.++ +.|++++++++.
T Consensus 94 amGA~P~~~l~~l~~p~~~~~~~~l~~i~~Gi~~~~~~---~gv~lvGGdt~~~~~~----~~~~t--~vG~v~~~~~~~ 164 (347)
T 3u0o_A 94 AMGGKPIMAIAILGWPINKLSPEIAREVTEGGRYACRQ---AGIALAGGHSIDAPEP----IFGLA--VTGIVPTERVKK 164 (347)
T ss_dssp HTTCEEEEEEEEEEECTTTSCHHHHHHHHHHHHHHHHH---TTCCEEEEEEEECSSC----EEEEE--EEEEEEGGGCCC
T ss_pred HcCCchHHHHhheeCCCCCCCHHHHHHHHHHHHHHHHH---cCCEEEcceeccCCCc----EEEEE--EEEEECCcceec
Confidence 3345688888765543 237788899988 7777 9999999999998752 34444 567777666766
Q ss_pred ccccccCCcEEEEecCCCC
Q psy13615 133 KVKDVAAGDVVIALPSSGI 151 (263)
Q Consensus 133 ~hpsl~~g~~ii~Lp~~G~ 151 (263)
. ...++||+|+.....|.
T Consensus 165 ~-~~a~~GD~iiltg~~G~ 182 (347)
T 3u0o_A 165 N-STAQAGCKLFLTKPLGI 182 (347)
T ss_dssp S-SCCCTTCEEEESSCBCH
T ss_pred C-CCCCCCCEEEEeCCccH
Confidence 5 55689999997766554
No 56
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=94.82 E-value=0.016 Score=50.92 Aligned_cols=68 Identities=9% Similarity=-0.017 Sum_probs=43.8
Q ss_pred ccCCCCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCC
Q psy13615 180 KYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPE 259 (263)
Q Consensus 180 ~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~ 259 (263)
.|+.+...+++|+..+ |.+ ++++..+++. ++..++++.+ | +.|...++++.++ .++.++|+|+|
T Consensus 204 ~~~~~~~~~~~g~~~~-p~~-l~~~~~~~i~-~~a~~~~~~l---g--~~G~~~vD~~~~~--------g~~~vlEiN~r 267 (307)
T 3r5x_A 204 FFDYNAKYDDASTIEE-VIE-LPAELKERVN-KASLACYKAL---K--CSVYARVDMMVKD--------GIPYVMEVNTL 267 (307)
T ss_dssp EETTEEEEEEEEEEEE-ECC-CCHHHHHHHH-HHHHHHHHHT---T--CCSEEEEEEEEET--------TEEEEEEEESS
T ss_pred ccChhhcCCCCCCeEe-cCC-CCHHHHHHHH-HHHHHHHHHh---C--CCceEEEEEEEEC--------CeEEEEEEcCC
Confidence 3344444447788877 765 5677666663 5555555554 3 4477788888553 23468899999
Q ss_pred CCCC
Q psy13615 260 EGDP 263 (263)
Q Consensus 260 ~gdp 263 (263)
+|.+
T Consensus 268 pg~~ 271 (307)
T 3r5x_A 268 PGMT 271 (307)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 9963
No 57
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=94.61 E-value=0.066 Score=55.93 Aligned_cols=88 Identities=15% Similarity=0.181 Sum_probs=61.6
Q ss_pred ccceeEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEee
Q psy13615 155 GFSLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKR 234 (263)
Q Consensus 155 g~Sl~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~ 234 (263)
++++ .++.|+.++...++.. | ....|..+|++....|.+.++++..+++. ++..++.+++ .++|...+
T Consensus 761 E~~V-~~l~d~~~v~~~~i~e-~----~~~~g~~~gd~~~~~P~~~l~~~~~~~i~-~~a~~i~~aL-----g~~G~~~v 828 (1073)
T 1a9x_A 761 EVDV-DAICDGEMVLIGGIME-H----IEQAGVHSGDSACSLPAYTLSQEIQDVMR-QQVQKLAFEL-----QVRGLMNV 828 (1073)
T ss_dssp EEEE-EEEECSSCEEEEEEEE-E----SSCTTSCGGGCCEEESCSSCCHHHHHHHH-HHHHHHHHHT-----TCCEEEEE
T ss_pred EEEE-EEEEECCeEEEEeeEE-E----EeccCCccCCceEEecCCCCCHHHHHHHH-HHHHHHHHHc-----CCcceEEE
Confidence 4665 3777877766666664 4 23457888888888887677888877775 3444544443 56799999
Q ss_pred ccccccCCceeeecCcceeeeeCCCCCC
Q psy13615 235 GFTEGTVTAKVFSSRNRREKEDNPEEGD 262 (263)
Q Consensus 235 gl~~~~~~~~~~~~~~~~~~e~n~~~gd 262 (263)
.++.++ .++.++|+|+|++.
T Consensus 829 df~v~~--------~~~~viEvNpR~~~ 848 (1073)
T 1a9x_A 829 QFAVKN--------NEVYLIEVNPRAAR 848 (1073)
T ss_dssp EEEECS--------SCEEEEEEECSCCT
T ss_pred EEEEEC--------CeEEEEEEECCCcc
Confidence 999643 33568899999974
No 58
>2yyd_A Selenide, water dikinase; FULL-length selenophosphate synthetase, structural genomics, NPPSFA; 1.98A {Aquifex aeolicus} PDB: 2yye_A* 2zod_A 2zau_A
Probab=94.32 E-value=0.019 Score=52.53 Aligned_cols=81 Identities=15% Similarity=0.144 Sum_probs=59.5
Q ss_pred HcCCCEEEeeCCCCCC----HHHHHHHHHHh--ccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEEeecCCcCCc
Q psy13615 60 NAGIPTKVSTYKHTLI----LSNSLQVMQKV--GAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAVEKASLLPK 133 (263)
Q Consensus 60 ~~gIP~~~v~~~~~~~----~~~~~~i~~~l--~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~~~~~~~in~ 133 (263)
.-+-|.++++...+++ .+..+++++++ +|++ +++.++||+|...|+ ..+..++.|++++.+++..
T Consensus 96 mGa~P~~~l~~l~~p~~~~~~~~l~~i~~Gi~~~~~~---~gv~lvGGdt~~~~~------~~i~~t~vG~v~~~~~~~~ 166 (345)
T 2yyd_A 96 MGGIPVNALAISCFNNCELDIEIFREVIRGALDKLRE---AKTVLLGGHTIDDKE------PKFGLSVAGICPEGKYITQ 166 (345)
T ss_dssp TTCEEEEEEEEEEECTTTCCHHHHHHHHHHHHHHHHH---TTCEEEEEEEEECSS------CEEEEEEEEECGGGCCCCS
T ss_pred cCCchHHHheeEeCCCCCCCHHHHHHHHHHHHHHHHH---cCCEEEeeEcccCCC------ceEEEEEEEEEcCCceecC
Confidence 3356888877655432 37888888988 6777 999999999998654 2356667788876666665
Q ss_pred cccccCCcEEEEecCCC
Q psy13615 134 VKDVAAGDVVIALPSSG 150 (263)
Q Consensus 134 hpsl~~g~~ii~Lp~~G 150 (263)
...++||+|+.....|
T Consensus 167 -~~a~~GD~Iivtg~lG 182 (345)
T 2yyd_A 167 -SGAQVGQLLILTKPIG 182 (345)
T ss_dssp -SCCCTTCEEEECSCBC
T ss_pred -CCCCCCCEEEEECCCc
Confidence 5568999999876544
No 59
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}
Probab=94.17 E-value=0.17 Score=45.50 Aligned_cols=93 Identities=11% Similarity=0.100 Sum_probs=52.0
Q ss_pred cccceeEEEecCcceeecCCcccc--ccccCC----CCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy13615 154 NGFSLVLCFTDGKTVKVMPPSQDH--KRKYNN----DKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTP 227 (263)
Q Consensus 154 ~g~Sl~~ai~dg~~~~~~~~t~dh--kr~~~~----d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~ 227 (263)
.++++. .+.++.+...++++... ...|+. +....+|......|.+ ++++..+++. ++...+.+.+ |
T Consensus 213 ~E~~v~-vl~~~~~~~~~~~~e~~~~~~~~d~~q~~~~ky~~~~~~~~~pa~-l~~~~~~~i~-~~a~~~~~~l---g-- 284 (346)
T 3se7_A 213 TEIGCA-VMGNGPELITGEVDQITLSHGFFKIHQESTPESGSDNSAVTVPAD-ISTTSRSLVQ-DTAKAVYRAL---G-- 284 (346)
T ss_dssp EEEEEE-EEEETTEEEECCCEEECCC--------------CGGGSCEESSCC-CCHHHHHHHH-HHHHHHHHHH---T--
T ss_pred EEEEEE-EEecCCCeEEEeeEEEecCCCCcCcccchhccccCCCeeEEeCCC-CCHHHHHHHH-HHHHHHHHHh---C--
Confidence 446652 44454444566665421 112333 4555666677777876 5777766664 4555555555 3
Q ss_pred eEEEEeeccccccCCceeeecCcceeeeeCCCCC
Q psy13615 228 FVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEG 261 (263)
Q Consensus 228 ~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~g 261 (263)
+.|...+.++.+..+ .+.++|+|.|+|
T Consensus 285 ~~G~~~vD~~~~~~g-------~~~vlEiN~rPG 311 (346)
T 3se7_A 285 CRGLSRVDLFLTEDG-------KVVLNEVNTFPG 311 (346)
T ss_dssp CCEEEEEEEEECTTS-------CEEEEEEESSCC
T ss_pred CceEEEEEEEEeCCC-------CEEEEEEeCCCC
Confidence 458888999854432 156899999987
No 60
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=94.07 E-value=0.21 Score=44.73 Aligned_cols=105 Identities=14% Similarity=0.135 Sum_probs=57.8
Q ss_pred CcEEEEecCCCCCccccceeEEEecCcceeecCCcccc--ccccCCCCCCC----CCCeeEECcccCCCHHHHHHHHHHH
Q psy13615 140 GDVVIALPSSGIHSNGFSLVLCFTDGKTVKVMPPSQDH--KRKYNNDKGPN----TGGMGAYCPCDILTEAQKKEIHDTI 213 (263)
Q Consensus 140 g~~ii~Lp~~G~~~~g~Sl~~ai~dg~~~~~~~~t~dh--kr~~~~d~G~d----TGgmga~~pv~i~~~~~~~~i~~~i 213 (263)
..++|+-.-.| .++++. .+.++.++..+++.... ...|+.+.... +|......|.+ ++++..+++. ++
T Consensus 202 ~~~lvEe~I~G---~E~~v~-vl~~~~~~~~~~~~ei~~~~~~~~~~~k~~~~~~~g~~~~~~p~~-l~~~~~~~i~-~~ 275 (343)
T 1e4e_A 202 SKILIEQAVSG---CEVGCA-VLGNSAALVVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVPAD-LSAEERGRIQ-ET 275 (343)
T ss_dssp SSEEEEECCCS---EEEEEE-EEEETTCCEECCCEEEEESSSCCCGGGSSSGGGCCSSEEECSSCS-SCHHHHHHHH-HH
T ss_pred CcEEEEeCcCC---eEEEEE-EEeCCCCeEEeeeEEEeeCCCccCHhhcccccCCCCCeeEEeCCC-CCHHHHHHHH-HH
Confidence 34555332244 346652 44454445555554311 11333333444 56655566765 5666666664 44
Q ss_pred HHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCCC
Q psy13615 214 LMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGD 262 (263)
Q Consensus 214 l~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~gd 262 (263)
..++.++| | +.|...+.++.+..+ .+.++|+|.|+|-
T Consensus 276 a~~~~~al---g--~~G~~~vD~~~~~~g-------~~~viEiN~rpg~ 312 (343)
T 1e4e_A 276 VKKIYKTL---G--CRGLARVDMFLQDNG-------RIVLNEVNTLPGF 312 (343)
T ss_dssp HHHHHHHT---T--CEEEEEEEEEECTTC-------CEEEEEEESSCCC
T ss_pred HHHHHHHc---C--CceEEEEEEEEeCCC-------CEEEEEeeCCCCC
Confidence 44554544 4 479999999954332 1468999999983
No 61
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori}
Probab=94.03 E-value=0.051 Score=49.83 Aligned_cols=105 Identities=11% Similarity=0.040 Sum_probs=60.2
Q ss_pred CcEEEEecCCCCCccccceeEEEecCcceeecCCcc-ccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHH
Q psy13615 140 GDVVIALPSSGIHSNGFSLVLCFTDGKTVKVMPPSQ-DHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVI 218 (263)
Q Consensus 140 g~~ii~Lp~~G~~~~g~Sl~~ai~dg~~~~~~~~t~-dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i 218 (263)
.+++|+-.-.|. .++|+..+.++|. ....++-. .....|+.+.++.+|+....+|.+ ++++..+++. ++..+++
T Consensus 222 ~~vlVEe~I~G~--~E~svi~v~v~g~-~~~~~~ei~~~~~~~d~~~ky~~g~~~~~~Pa~-l~~~~~~~i~-~~a~~~~ 296 (367)
T 2pvp_A 222 KEVLIEPFIQGV--KEYNLAGCKIKKD-FCFSYIEEPNKQEFLDFKQKYLDFSRNKAPKAS-LSNALEEQLK-ENFKKLY 296 (367)
T ss_dssp SCEEEEECCTTC--EEEEEEEEEETTE-EEEEEEEETTTTEEECCCCSSCCSCCCSCCCCC-CCHHHHHHHH-HHHHHHH
T ss_pred CcEEEEeCCCCC--ceeeEEEEEECCE-EEEEEEEEecCCceEcccccccCCCeeEEecCC-CCHHHHHHHH-HHHHHHH
Confidence 345554333441 4566544555543 22232211 123456677788888877777876 5776666663 3443444
Q ss_pred HHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCCC
Q psy13615 219 KKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGD 262 (263)
Q Consensus 219 ~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~gd 262 (263)
++| | +.|...+.++.+ . .++.++|+|.|+|.
T Consensus 297 ~aL---g--~~G~~~vDf~~~-~-------g~~~vlEiN~rpg~ 327 (367)
T 2pvp_A 297 SDL---F--DGAIIRCDFFVI-E-------NEVYLNEINPIPGS 327 (367)
T ss_dssp TTT---S--TTCCEEEEEEEE-T-------TEEEEEEEESSCGG
T ss_pred HHc---C--CCCEEEEEEEEE-C-------CeEEEEEEeCCCCC
Confidence 433 4 467788888854 1 23468999999983
No 62
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=93.95 E-value=0.087 Score=46.41 Aligned_cols=67 Identities=13% Similarity=-0.142 Sum_probs=45.7
Q ss_pred CCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCCC
Q psy13615 186 GPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGD 262 (263)
Q Consensus 186 G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~gd 262 (263)
++....++.. |.+ ++++..+++ .++..+++++|-++...+.|...+.++.+..+ ++.++|+|+|+|.
T Consensus 224 ~~~~~~~g~~-p~~-l~~~~~~~i-~~~a~~~~~~l~~~~~~~~G~~~vd~~~~~~g-------~~~viEiN~R~g~ 290 (334)
T 2r85_A 224 DITYTVIGNI-PIV-LRESLLMDV-IEAGERVVKAAEELMGGLWGPFCLEGVFTPDL-------EFVVFEISARIVA 290 (334)
T ss_dssp CCCEEEEEEE-ECC-CCGGGHHHH-HHHHHHHHHHHHHHSSCCCEEEEEEEEECTTS-------CEEEEEEECSCCG
T ss_pred CCceeeeCCC-Ccc-cCHHHHHHH-HHHHHHHHHHHHhhcccccccEEEEEEECCCC-------CEEEEEEeCCcCC
Confidence 3333333444 554 466666777 47777888888665667999999999965332 2468899999985
No 63
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}
Probab=93.94 E-value=0.14 Score=47.23 Aligned_cols=103 Identities=13% Similarity=0.112 Sum_probs=50.8
Q ss_pred cEEEEecCCCCCccccceeEEEecCcceeecCCcccc--ccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHH
Q psy13615 141 DVVIALPSSGIHSNGFSLVLCFTDGKTVKVMPPSQDH--KRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVI 218 (263)
Q Consensus 141 ~~ii~Lp~~G~~~~g~Sl~~ai~dg~~~~~~~~t~dh--kr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i 218 (263)
+++|+-.-.| .++++. .+.+ .....++++... ...|+.+....+|+....+|.+ ++++..+++. ++...+.
T Consensus 239 ~vlVEe~I~G---~E~~v~-vl~d-~~~~~~~~~ei~~~~~~~d~~~ky~~g~~~~~~Pa~-l~~~~~~~i~-~~a~~~~ 311 (383)
T 3k3p_A 239 RVLIEQGVDA---REIEVG-ILGN-TDVKTTLPGEIVKDVAFYDYEAKYIDNKITMAIPAE-IDPVIVEKMR-DYAATAF 311 (383)
T ss_dssp EEEEEECCCS---EEEEEE-EEES-SSCEECCCEEEC-----------------CEESSCC-CCHHHHHHHH-HHHHHHH
T ss_pred eEEEEcCCCC---eEEEEE-EEeC-CCeeEEeeEEEecCCCccchhhcccCCCeeEEecCC-CCHHHHHHHH-HHHHHHH
Confidence 4445432244 446652 3334 334445544321 1244455556677777888887 5777766664 4444444
Q ss_pred HHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCCC
Q psy13615 219 KKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGD 262 (263)
Q Consensus 219 ~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~gd 262 (263)
+++ | +.|...+.++.+..+ .+.++|+|.|+|.
T Consensus 312 ~aL---g--~~G~~~vDf~~~~~g-------~~~vlEINtrPG~ 343 (383)
T 3k3p_A 312 RTL---G--CCGLSRCDFFLTEDG-------KVYLNELNTMPGF 343 (383)
T ss_dssp HHT---T--CCEEEEEEEEECTTC-------CEEEEEEESSCCC
T ss_pred HHc---C--CceEEEEEEEEECCC-------CEEEEEeeCCCCC
Confidence 443 4 569988999955433 1468999999994
No 64
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=93.76 E-value=0.082 Score=48.25 Aligned_cols=59 Identities=17% Similarity=0.194 Sum_probs=40.6
Q ss_pred CCCeeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEE-EEeeccccccCCceeeecCcceeeeeCCCCCC
Q psy13615 189 TGGMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVG-EKKRGFTEGTVTAKVFSSRNRREKEDNPEEGD 262 (263)
Q Consensus 189 TGgmga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G-~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~gd 262 (263)
...++.+.|.+ ++++..+++. ++..++++++ | |.| ...+.++.++ .++.++|+|+|+|.
T Consensus 223 ~~~~~~~~p~~-l~~~~~~~l~-~~a~~~~~~l---g--~~gg~~~ve~~~~~--------~~~~~iEiN~R~~~ 282 (403)
T 4dim_A 223 AVPVGHYVPLD-VKDDIIEKTK-TEVKKAIKAL---G--LNNCAVNVDMILKD--------NEVYIIELTGRVGA 282 (403)
T ss_dssp EEEEEEEESCC-SCHHHHHHHH-HHHHHHHHHH---T--CCSEEEEEEEEEET--------TEEEEEEEESSCCS
T ss_pred CcceeEEeCCC-CCHHHHHHHH-HHHHHHHHHc---C--CCCCcEEEEEEEEC--------CcEEEEEEcCCCCC
Confidence 45677788876 6777777775 5556666665 2 454 6678888543 34578899999985
No 65
>2yxz_A Thiamin-monophosphate kinase; alpha/beta structure, transferase; 1.90A {Thermus thermophilus}
Probab=93.64 E-value=0.019 Score=51.30 Aligned_cols=80 Identities=18% Similarity=0.105 Sum_probs=56.6
Q ss_pred CEEEeeCCCCC---CHHHHHHHHHHh--ccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEEeecCCcCCcccccc
Q psy13615 64 PTKVSTYKHTL---ILSNSLQVMQKV--GAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKDVA 138 (263)
Q Consensus 64 P~~~v~~~~~~---~~~~~~~i~~~l--~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~~~~~~~in~hpsl~ 138 (263)
|.++.+..... +.+..+++++++ .|++ +++.++||+|.+.+.. .++++ |.+++.+.+. ...+
T Consensus 83 P~~~~~~~~~p~~~~~~~l~~~~~Gi~~~~~~---~g~~lvGG~t~~~~~~------~i~~t--G~v~~~~~~~--~~a~ 149 (311)
T 2yxz_A 83 PLGFTLGLFLPEDLEEGFVLELVRGAAEAAKR---LGAFLLGGDTNRGVEV------ALTVS--GYALAEAPLP--RKAL 149 (311)
T ss_dssp EEEEEEEEEECTTCBHHHHHHHHHHHHHHHHH---TTCEEEEEEEEECSSC------EEEEE--EEEEESSCCC--SCCC
T ss_pred hhhheeeEeCCCCCCHHHHHHHHHHHHHHHHH---cCCeEEceecCCCCCc------EEEEE--eeeCCCCccc--cCCC
Confidence 77666554333 236778888888 7777 9999999999986532 35555 6666555555 4578
Q ss_pred CCcEEEEec-CCCCCcccc
Q psy13615 139 AGDVVIALP-SSGIHSNGF 156 (263)
Q Consensus 139 ~g~~ii~Lp-~~G~~~~g~ 156 (263)
+||+|+... ..|.|+.++
T Consensus 150 ~GD~i~~~g~~~G~~~~~~ 168 (311)
T 2yxz_A 150 PGDLLYLAGDRWGRTGAAI 168 (311)
T ss_dssp TTCEEEEESSCTTHHHHHH
T ss_pred CCCEEEEeCCCcchHHHHH
Confidence 999999888 788876554
No 66
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A
Probab=93.24 E-value=0.13 Score=49.49 Aligned_cols=56 Identities=16% Similarity=0.071 Sum_probs=40.4
Q ss_pred ECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccc-cCCceeeecCcceeeeeCCCCCCC
Q psy13615 195 YCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEG-TVTAKVFSSRNRREKEDNPEEGDP 263 (263)
Q Consensus 195 ~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~-~~~~~~~~~~~~~~~e~n~~~gdp 263 (263)
.+|.+..+++..+++. ++..++++++ .|.|..+++++.+ ..+ ++.++|+|+|+|++
T Consensus 319 ~~P~~~l~~~~~~~i~-~~a~~~~~al-----g~~G~~~ve~~~~~~dg-------~~~~iEiN~R~~g~ 375 (554)
T 1w96_A 319 EAPVTIAKAETFHEME-KAAVRLGKLV-----GYVSAGTVEYLYSHDDG-------KFYFLELNPRLQVE 375 (554)
T ss_dssp EESCCSSCHHHHHHHH-HHHHHHHHHH-----TCCEEEEEEEEECTTTC-------CEEEEEEECSCCTT
T ss_pred eCCCcCCCHHHHHHHH-HHHHHHHHHc-----CCcceEEEEEEEECCCC-------CEEEEEeeCCCCcc
Confidence 4577767888877775 4666666655 5779999999964 222 25688999999874
No 67
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus}
Probab=92.88 E-value=0.2 Score=46.61 Aligned_cols=57 Identities=18% Similarity=0.134 Sum_probs=37.5
Q ss_pred eEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCc-ceeeeeCCCCCC
Q psy13615 193 GAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRN-RREKEDNPEEGD 262 (263)
Q Consensus 193 ga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~-~~~~e~n~~~gd 262 (263)
+..+|.+.++++..+++. ++..+++++ +.|.|+++++++.+. ..| +.++|+|+|++-
T Consensus 238 ~~~~P~~~l~~~~~~~i~-~~a~~~~~~-----lg~~G~~~ve~~~~~-------~~g~~~viEiN~R~~~ 295 (451)
T 2vpq_A 238 VEEAPSPILDDETRREMG-NAAVRAAKA-----VNYENAGTIEFIYDL-------NDNKFYFMEMNTRIQV 295 (451)
T ss_dssp EEEESCTTCCHHHHHHHH-HHHHHHHHH-----TTCCEEEEEEEEEET-------TTTEEEEEEEECSCCT
T ss_pred EEEcCCCCCCHHHHHHHH-HHHHHHHHH-----cCCcceEEEEEEEEC-------CCCCEEEEEeeCCCCC
Confidence 345677767877766665 333333333 457799999999541 223 568899999973
No 68
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=92.85 E-value=0.2 Score=46.58 Aligned_cols=56 Identities=18% Similarity=0.042 Sum_probs=35.9
Q ss_pred EECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCCC
Q psy13615 194 AYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGD 262 (263)
Q Consensus 194 a~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~gd 262 (263)
..+|.+.++++..+++. ..+.+.+.. +.|.|..+++++.+..+ .+.++|+|+|++-
T Consensus 239 ~~~P~~~l~~~~~~~i~----~~a~~~~~~--lg~~G~~~ve~~~~~~g-------~~~viEiN~R~~~ 294 (451)
T 1ulz_A 239 EIAPSLILTPEKREYYG----NIVTKAAKE--IGYYNAGTMEFIADQEG-------NLYFIEMNTRIQV 294 (451)
T ss_dssp EEESCSSCCHHHHHHHH----HHHHHHHHH--TTCCEEEEEEEEECTTC-------CEEEEEEECSCCT
T ss_pred eECCcccCCHHHHHHHH----HHHHHHHHH--cCCCcceEEEEEEeCCC-------CEEEEEeeCCCCc
Confidence 34566666776666554 233333333 45789999999955332 1568899999973
No 69
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...
Probab=92.76 E-value=0.2 Score=46.55 Aligned_cols=54 Identities=13% Similarity=0.016 Sum_probs=36.0
Q ss_pred EECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCC
Q psy13615 194 AYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEG 261 (263)
Q Consensus 194 a~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~g 261 (263)
..+|.+.++++..+++. ++..++++++ .|.|+.+++++.+. .++.++|+|+|++
T Consensus 241 ~~~p~~~l~~~~~~~i~-~~a~~~~~~l-----g~~G~~~ve~~~~~--------~~~~viEiN~R~~ 294 (449)
T 2w70_A 241 EEAPAPGITPELRRYIG-ERCAKACVDI-----GYRGAGTFEFLFEN--------GEFYFIEMNTRIQ 294 (449)
T ss_dssp EEESCTTCCHHHHHHHH-HHHHHHHHHH-----TCCEEEEEEEEEET--------TEEEEEEEECSCC
T ss_pred eeCCcccCCHHHHHHHH-HHHHHHHHHc-----CCCceEEEEEEEEC--------CCEEEEEEECCCC
Confidence 34666666777666654 3333444433 47799999999544 3457899999996
No 70
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Probab=92.51 E-value=0.37 Score=43.56 Aligned_cols=65 Identities=17% Similarity=0.170 Sum_probs=37.2
Q ss_pred CCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCCC
Q psy13615 184 DKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGD 262 (263)
Q Consensus 184 d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~gd 262 (263)
+....+|+.....|.+ ++++..+++. ++..++.+++ | +.|...+.++.+..+ .+.++|+|.|+|-
T Consensus 249 ~~k~~~g~~~~~~pa~-l~~~~~~~i~-~~a~~~~~al---g--~~G~~~vD~~~~~~g-------~~~viEiN~rpg~ 313 (364)
T 2i87_A 249 KSKYKDGKVQLQIPAD-LDEDVQLTLR-NMALEAFKAT---D--CSGLVRADFFVTEDN-------QIYINETNAMPGF 313 (364)
T ss_dssp --------CCEESSCS-SCHHHHHHHH-HHHHHHHHHT---T--CCEEEEEEEEECTTC-------CEEEEEEESSCCC
T ss_pred HHcccCCCeeEEeCCC-CCHHHHHHHH-HHHHHHHHHc---C--CCcEEEEEEEEecCC-------CEEEEEEeCCCCC
Confidence 3334455555667776 5666666664 4444444444 4 459999999954322 1468999999983
No 71
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii}
Probab=92.44 E-value=0.38 Score=44.13 Aligned_cols=103 Identities=17% Similarity=0.181 Sum_probs=51.3
Q ss_pred CcEEEEecCCCCCccccceeEEEecCcceeecCCccc--cccccCCCCCCCCCC-eeEECcccCCCHHHHHHHHHHHHHH
Q psy13615 140 GDVVIALPSSGIHSNGFSLVLCFTDGKTVKVMPPSQD--HKRKYNNDKGPNTGG-MGAYCPCDILTEAQKKEIHDTILMR 216 (263)
Q Consensus 140 g~~ii~Lp~~G~~~~g~Sl~~ai~dg~~~~~~~~t~d--hkr~~~~d~G~dTGg-mga~~pv~i~~~~~~~~i~~~il~~ 216 (263)
.+++|+-.-.| .++++. .+.+ .....+++... +...|+.+....+|. ....+|.+ ++++..++++ ++..+
T Consensus 217 ~~vlVEe~I~G---~E~~v~-vl~~-~~~~~~~~~ei~~~~~~~d~~~ky~~g~~~~~~~Pa~-l~~~~~~~i~-~~a~~ 289 (372)
T 3tqt_A 217 DRLMVEPRIRG---REIECA-VLGN-GAPKASLPGEIIPHHDYYSYDAKYLDPNGATTTTSVD-LSESVTKQIQ-QIAID 289 (372)
T ss_dssp SCEEEEECCCS---EEEEEE-EEES-SSCEECCCEEEECC---------------CEEESCCC-CCHHHHHHHH-HHHHH
T ss_pred CCEEEECCCCC---EEEEEE-EEeC-CCceEeeeEEEecCCCccchhhcccCCCceEEEeCCC-CCHHHHHHHH-HHHHH
Confidence 34445433344 456652 3333 34444454431 112344455555665 66777877 5777777664 44444
Q ss_pred HHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCC
Q psy13615 217 VIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEG 261 (263)
Q Consensus 217 ~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~g 261 (263)
+.++| | +.|..-+.++.+..+ .+.++|+|.|+|
T Consensus 290 ~~~aL---g--~~G~~rvDf~~~~dg-------~~~vlEINt~PG 322 (372)
T 3tqt_A 290 AFKMV---H--CSGMARVDFFVTPNN-------KVLVNEINTIPG 322 (372)
T ss_dssp HHHHT---T--CCEEEEEEEEECTTC-------CEEEEEEESSCC
T ss_pred HHHHh---C--CccEEEEEEEEeCCC-------cEEEEEEECCCC
Confidence 44443 3 568888898855432 146899999998
No 72
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=92.18 E-value=0.22 Score=45.51 Aligned_cols=61 Identities=18% Similarity=0.186 Sum_probs=39.7
Q ss_pred CCC-CeeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCCC
Q psy13615 188 NTG-GMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGD 262 (263)
Q Consensus 188 dTG-gmga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~gd 262 (263)
.+| +....+|.+ ++++..+++. ++..+++++| | +.|...+.++.+..+ .+.++|+|+|+|.
T Consensus 262 ~~g~~~~~~~Pa~-l~~~~~~~i~-~~a~~~~~al---g--~~G~~~vD~~~~~~g-------~~~vlEiN~rpg~ 323 (377)
T 1ehi_A 262 VDNSAVHFQIPAQ-LSPEVTKEVK-QMALDAYKVL---N--LRGEARMDFLLDENN-------VPYLGEPNTLPGF 323 (377)
T ss_dssp TCCTTCEEESSCC-CCHHHHHHHH-HHHHHHHHHT---T--CCEEEEEEEEECTTC-------CEEEEEEESSCCC
T ss_pred cCCCCeeEEeCCC-CCHHHHHHHH-HHHHHHHHHc---C--CCcEEEEEEEEeCCC-------CEEEEEEeCCCCC
Confidence 345 566677876 5777766664 3444444443 4 459999999954322 1468999999984
No 73
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*
Probab=92.04 E-value=0.46 Score=43.70 Aligned_cols=67 Identities=15% Similarity=0.130 Sum_probs=38.5
Q ss_pred CCCCCCCC-CCeeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCC
Q psy13615 182 NNDKGPNT-GGMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEE 260 (263)
Q Consensus 182 ~~d~G~dT-Ggmga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~ 260 (263)
+.+..... ++....+|.+ ++++..+++. ++..++.+.+ | +.|...+.++.+..+ .+.++|+|.|+
T Consensus 274 d~~~ky~~~~~~~~~~Pa~-l~~~~~~~i~-~~a~~~~~aL---g--~~G~~~vDf~~~~dg-------~~~vlEiN~~P 339 (386)
T 3e5n_A 274 SYATKYISEHGAEIVIPAD-IDAQTQQRIQ-QIAVQAYQAL---G--CAGMARVDVFLCADG-------RIVINEVNTLP 339 (386)
T ss_dssp ------------CEESSCS-SCHHHHHHHH-HHHHHHHHHH---T--CCSEEEEEEEECTTC-------CEEEEEEESSC
T ss_pred chhcccCCCCCeEEEECCC-CCHHHHHHHH-HHHHHHHHHh---C--CccEEEEEEEEECCC-------cEEEEEeECCC
Confidence 33333433 3466778887 5777777774 5555555555 3 468888888854332 15689999999
Q ss_pred CC
Q psy13615 261 GD 262 (263)
Q Consensus 261 gd 262 (263)
|-
T Consensus 340 G~ 341 (386)
T 3e5n_A 340 GF 341 (386)
T ss_dssp CC
T ss_pred CC
Confidence 94
No 74
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Probab=91.92 E-value=0.66 Score=42.04 Aligned_cols=68 Identities=15% Similarity=0.161 Sum_probs=42.1
Q ss_pred ccCCCCCCCCCC-eeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCC
Q psy13615 180 KYNNDKGPNTGG-MGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNP 258 (263)
Q Consensus 180 ~~~~d~G~dTGg-mga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~ 258 (263)
.|+.+.....|. .....|.+ ++++..+++. ++...+.+.+ | +.|...+.++.+..+ .+.++|+|.
T Consensus 253 ~~~~~~ky~~~~~~~~~~Pa~-l~~~~~~~i~-~~a~~~~~al---g--~~G~~~vD~~~~~~g-------~~~vlEiN~ 318 (364)
T 3i12_A 253 FYAYDTKYIDDNGAQVVVPAQ-IPSEVNDKIR-AIAIQAYQTL---G--CAGMARVDVFLTADN-------EVVINEINT 318 (364)
T ss_dssp CC--TTTTSGGGGCEEESSCS-SCHHHHHHHH-HHHHHHHHHT---T--CCEEEEEEEEECTTC-------CEEEEEEES
T ss_pred ccCHHHcccCCCceEEEeCCC-CCHHHHHHHH-HHHHHHHHHh---C--CceEEEEEEEEecCC-------CEEEEEeeC
Confidence 334444444544 67778887 5777766664 4444444443 4 479888999855332 146899999
Q ss_pred CCC
Q psy13615 259 EEG 261 (263)
Q Consensus 259 ~~g 261 (263)
|+|
T Consensus 319 ~Pg 321 (364)
T 3i12_A 319 LPG 321 (364)
T ss_dssp SCC
T ss_pred CCC
Confidence 887
No 75
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=91.90 E-value=0.14 Score=46.85 Aligned_cols=61 Identities=13% Similarity=0.099 Sum_probs=40.5
Q ss_pred CCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCC
Q psy13615 186 GPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEG 261 (263)
Q Consensus 186 G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~g 261 (263)
...+|+.....|.+ ++++..++++ ++..++.++| + +.|..-+.++.+..+ ..++|+|.|+|
T Consensus 276 ky~~~~~~~~~Pa~-l~~~~~~~i~-~~a~~~~~aL---g--~~G~~~vDf~~~~dg--------~~vlEIN~~PG 336 (373)
T 3lwb_A 276 KYLDDAAELDVPAK-VDDQVAEAIR-QLAIRAFAAI---D--CRGLARVDFFLTDDG--------PVINEINTMPG 336 (373)
T ss_dssp HHTCTTCEEESSCC-CCHHHHHHHH-HHHHHHHHHT---T--CCSEEEEEEEEETTE--------EEEEEEESSCC
T ss_pred cccCCCceEEeCCC-CCHHHHHHHH-HHHHHHHHHh---C--CccEEEEEEEEECCC--------CEEEEecCCCC
Confidence 34456666677877 5777777664 4444444444 4 458888899854433 35899999998
No 76
>3ac6_A Phosphoribosylformylglycinamidine synthase 2; purine metabolism, ATP-binding, ligase, nucleotide-binding, biosynthesis; HET: ADP; 2.35A {Thermus thermophilus} PDB: 3viu_A*
Probab=91.75 E-value=0.063 Score=53.72 Aligned_cols=91 Identities=8% Similarity=-0.069 Sum_probs=62.9
Q ss_pred CEEEeeCCCCCCH------HHHHHHHHHh--ccccCCCCceeeeccccccCCCCcCCC-cEEEeeeeeEEeecCCcCCcc
Q psy13615 64 PTKVSTYKHTLIL------SNSLQVMQKV--GAKYSDIAPFSQDGGETAELPGLYQPG-DYDLAGFAVGAVEKASLLPKV 134 (263)
Q Consensus 64 P~~~v~~~~~~~~------~~~~~i~~~l--~~~~~~~~~~~~~gge~~~l~~~~~~d-~i~LAG~m~~~~~~~~~in~h 134 (263)
|..+.+...+++. ....++++++ +|++ +|+.++||+|...++.+... ...++.++.++++..+++..
T Consensus 480 Pl~~~~~l~~g~~~~~~~~~~l~~~v~Gi~~a~~~---~gv~ivgG~ts~~~~~~~~~i~ptl~i~~vG~v~~~~~i~~- 555 (725)
T 3ac6_A 480 PLAYTDGLNLGSPETPEGYHELAETIAGLKEASEA---LGVPVVSGNVSLYNESGGKRIPPTAMVGVVGVLEVDKRAEM- 555 (725)
T ss_dssp EEEEEEEEECSCSSSHHHHHHHHHHHHHHHHHHHH---HTCCEEEEEEECCCEETTEECCCEEEEEEEEEEEGGGCCBS-
T ss_pred ceEEEEEEEcCCCCChhHHHHHHHHHHHHHHHHHH---hCCCeeeeeeeecCCCCCCccCCceEEEEEEEechhhccCh-
Confidence 7777776655432 2567788888 7787 99999999999987765321 23567778887764555543
Q ss_pred ccccCCcEEEEecCCCCCccccce
Q psy13615 135 KDVAAGDVVIALPSSGIHSNGFSL 158 (263)
Q Consensus 135 psl~~g~~ii~Lp~~G~~~~g~Sl 158 (263)
...++||.||.+...|.|..+.++
T Consensus 556 ~~~~~GD~lil~g~~g~~~ggs~l 579 (725)
T 3ac6_A 556 GFRRPGEVLLLIGEERGELGASEV 579 (725)
T ss_dssp SCCSTTCEEEEESCSCCBCTTCHH
T ss_pred hhCCCCCEEEEEcCCCCCccHHHH
Confidence 224689999999887777544433
No 77
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=91.54 E-value=0.53 Score=42.86 Aligned_cols=96 Identities=11% Similarity=0.115 Sum_probs=52.9
Q ss_pred CcEEEEecCCCCCccccceeEEEecCcc-eeecCCccccccccCCCCCCCCCCeeEE--CcccCCCHHHHHHHHHHHHHH
Q psy13615 140 GDVVIALPSSGIHSNGFSLVLCFTDGKT-VKVMPPSQDHKRKYNNDKGPNTGGMGAY--CPCDILTEAQKKEIHDTILMR 216 (263)
Q Consensus 140 g~~ii~Lp~~G~~~~g~Sl~~ai~dg~~-~~~~~~t~dhkr~~~~d~G~dTGgmga~--~pv~i~~~~~~~~i~~~il~~ 216 (263)
+.++|+-.-.| ..++++. .+.+.++ +..++++..+. .+|+... .|.+ ++++..+++. ++..+
T Consensus 183 ~~~lvEe~i~g--~~E~~v~-~~~~~~G~~~~~~~~e~~~----------~~g~~~~~~~p~~-l~~~~~~~~~-~~a~~ 247 (389)
T 3q2o_A 183 AECILEKWVPF--EKEVSVI-VIRSVSGETKVFPVAENIH----------VNNILHESIVPAR-ITEELSQKAI-AYAKV 247 (389)
T ss_dssp SCEEEEECCCC--SEEEEEE-EEECTTCCEEECCCEEEEE----------ETTEEEEEEESCS-SCHHHHHHHH-HHHHH
T ss_pred CCEEEEecccC--ceEEEEE-EEEcCCCCEEEecCeeeEE----------cCCceEEEECCCC-CCHHHHHHHH-HHHHH
Confidence 44555433333 2456653 5555333 34556553110 1133333 4443 5667666664 44444
Q ss_pred HHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCCC
Q psy13615 217 VIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGD 262 (263)
Q Consensus 217 ~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~gd 262 (263)
+++.+ .|.|++.+.++.+..+ .+.++|+|+|+|.
T Consensus 248 ~~~~l-----g~~G~~~ve~~~~~dg-------~~~viEiNpR~~~ 281 (389)
T 3q2o_A 248 LADEL-----ELVGTLAVEMFATADG-------EIYINELAPRPHN 281 (389)
T ss_dssp HHHHT-----TCCEEEEEEEEECTTS-------CEEEEEEESSCCG
T ss_pred HHHHc-----CCeeEEEEEEEEeCCC-------CEEEEEeeCCCCC
Confidence 44443 4689999999955332 2568899999985
No 78
>1vk3_A Phosphoribosylformylglycinamidine synthase II; TM1246, structural genomics, JCSG, PSI, protein structure initiative; 2.15A {Thermotoga maritima} SCOP: d.79.4.1 d.79.4.1 d.139.1.1 d.139.1.1 PDB: 3d54_A* 2hs3_A* 2hs0_A* 2hs4_A* 2hru_A* 2hry_A*
Probab=91.44 E-value=0.058 Score=53.08 Aligned_cols=84 Identities=19% Similarity=0.231 Sum_probs=55.5
Q ss_pred CEEEeeCCCCCCHHHHHHHHHHh--ccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEEeecCCcCCccccccCCc
Q psy13615 64 PTKVSTYKHTLILSNSLQVMQKV--GAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKDVAAGD 141 (263)
Q Consensus 64 P~~~v~~~~~~~~~~~~~i~~~l--~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~~~~~~~in~hpsl~~g~ 141 (263)
|...++...++ +..+++++++ .|++ +|+.++||+|...|.+ ....+ +.+++.|.+++.+++.. ...++||
T Consensus 114 P~a~l~~l~~g--~~l~~~~~Gi~~~~~~---~GvplvGG~t~~~~~y-~~~p~-~~~~~vG~v~~~~~~~~-~~~~~GD 185 (615)
T 1vk3_A 114 PTAIFDSLHMS--RIIDGIIEGIADYGNS---IGVPTVGGELRISSLY-AHNPL-VNVLAAGVVRNDMLVDS-KASRPGQ 185 (615)
T ss_dssp EEEEEEEEEES--SCCHHHHHHHHHHHHH---HTCCEEEEEEEECGGG-TTCCE-EEEEEEEEEETTSCCCS-SCCSTTC
T ss_pred ehhhhhhhhHH--HHHHHHHHHHHHHHHH---cCCCEeEEEEEEecCC-CCCce-EEEEEEEEEcHHHccCc-cCCCCcC
Confidence 87777766665 3455666766 5677 9999999999987774 32333 56667888876666654 3457999
Q ss_pred EEEEecC----CCCCccc
Q psy13615 142 VVIALPS----SGIHSNG 155 (263)
Q Consensus 142 ~ii~Lp~----~G~~~~g 155 (263)
+||.+.+ .|.|+..
T Consensus 186 ~Iil~G~~tg~~G~~g~~ 203 (615)
T 1vk3_A 186 VIVIFGGATGRDGIHGAS 203 (615)
T ss_dssp EEEEEESCBCSCC-----
T ss_pred EEEEECCCCCCCcccHHH
Confidence 9998755 5667644
No 79
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A*
Probab=91.27 E-value=0.27 Score=44.92 Aligned_cols=95 Identities=13% Similarity=0.100 Sum_probs=57.2
Q ss_pred cEEEEecCCCCCccccceeEEEecCcc-eeecCCccccccccCCCCCCCCCCee--EECcccCCCHHHHHHHHHHHHHHH
Q psy13615 141 DVVIALPSSGIHSNGFSLVLCFTDGKT-VKVMPPSQDHKRKYNNDKGPNTGGMG--AYCPCDILTEAQKKEIHDTILMRV 217 (263)
Q Consensus 141 ~~ii~Lp~~G~~~~g~Sl~~ai~dg~~-~~~~~~t~dhkr~~~~d~G~dTGgmg--a~~pv~i~~~~~~~~i~~~il~~~ 217 (263)
.++|+---.+ +.++|+. .+.+.++ +...|++..+.+ .|.. ++.|. .++++..++++ ++..++
T Consensus 149 ~vivEe~I~~--~~Eisv~-v~~~~~G~~~~~p~~e~~~~----------~g~~~~~~~pa-~l~~~~~~~~~-~~a~~i 213 (355)
T 3eth_A 149 ECIVEQGINF--SGEVSLV-GARGFDGSTVFYPLTHNLHQ----------DGILRTSVAFP-QANAQQQARAE-EMLSAI 213 (355)
T ss_dssp TEEEEECCCC--SEEEEEE-EEECTTSCEEECCCEEEEEE----------TTEEEEEEECS-SCCHHHHHHHH-HHHHHH
T ss_pred CEEEEEccCC--CcEEEEE-EEEcCCCCEEEECCEEEEee----------CCeEEEEECCC-CCCHHHHHHHH-HHHHHH
Confidence 4555432232 3457763 4545443 445677643211 1222 23333 35777777774 666677
Q ss_pred HHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCCCC
Q psy13615 218 IKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGDP 263 (263)
Q Consensus 218 i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~gdp 263 (263)
+++| .|+|++.+.|+.+. .++.|+|+|+|++++
T Consensus 214 ~~aL-----g~~G~~~vEf~~~~--------~~~~v~EinpR~~~s 246 (355)
T 3eth_A 214 MQEL-----GYVGVMAMECFVTP--------QGLLINELAPRVHNS 246 (355)
T ss_dssp HHHH-----TCCEEEEEEEEEET--------TEEEEEEEESSCCGG
T ss_pred HHHC-----CCeeEEEEEEEEEC--------CcEEEEEeeCCCCCC
Confidence 6665 57999999999553 345789999999863
No 80
>3fd5_A Selenide, water dikinase 1; selenophosphate synthetase, SELD, ATP-binding, nucleotide-binding, selenium, transferase; HET: AP2; 1.90A {Homo sapiens} PDB: 3fd6_A*
Probab=91.01 E-value=0.19 Score=46.67 Aligned_cols=67 Identities=22% Similarity=0.260 Sum_probs=51.1
Q ss_pred HHHHHHHHHh--ccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEEeecCCcCCccccccCCcEEEEecCCCCCc
Q psy13615 77 SNSLQVMQKV--GAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKDVAAGDVVIALPSSGIHS 153 (263)
Q Consensus 77 ~~~~~i~~~l--~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~~~~~~~in~hpsl~~g~~ii~Lp~~G~~~ 153 (263)
+..+++++++ .|++ +++.++||+|...|. ..+.+++.|++++.+++.. ...++||+|+..-.-|.|+
T Consensus 141 ~~l~~i~~Gi~~~~~~---~gv~lvGGdT~~~p~------~~i~~t~~G~v~~~~~l~~-~~a~~GD~Iiltg~lG~~~ 209 (394)
T 3fd5_A 141 KVMPLIIQGFKDAAEE---AGTSVTGGQTVLNPW------IVLGGVATTVCQPNEFIMP-DNAVPGDVLVLTKPLGTQV 209 (394)
T ss_dssp HHHHHHHHHHHHHHHH---TTCCEEEEEEEEESS------CEEEEEEEEEECGGGCCCT-TCCCTTCEEEESSCBCHHH
T ss_pred HHHHHHHHHHHHHHHH---hCCcEEeeeEEEcCC------cEEEEEEEEEEcCCceecC-CCCCCCCEEEEECCccHHH
Confidence 3677888888 6777 999999999999764 2456677888876666665 5578999999876656553
No 81
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=90.91 E-value=0.81 Score=39.65 Aligned_cols=73 Identities=23% Similarity=0.160 Sum_probs=41.6
Q ss_pred ccCCccEEEEEcCc-chhHHHHHHHhccccCCCCceEEEEEecCCC------------ChhhHHHHHcCCCEEEeeCCCC
Q psy13615 7 MVQRKRVAVLISGT-GTNLKSLLEATSNRSDIMRAEIVLVVSNKHN------------VEGLNIARNAGIPTKVSTYKHT 73 (263)
Q Consensus 7 m~~~~riavl~SG~-Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~------------a~gl~~A~~~gIP~~~v~~~~~ 73 (263)
|++++|++++.||. -|.+.+.+ . .++ +.+|+++.++.+. ..+...|+..|||..+++....
T Consensus 1 ~~~~MKvvvl~SGGkDSs~al~~-l--~~~---G~eV~~L~~~~~~~~~s~~~h~~~~e~a~~~A~~LGIpl~~v~~~g~ 74 (237)
T 3rjz_A 1 MVGLADVAVLYSGGKDSNYALYW-A--IKN---RFSVKFLVTMVSENEESYMYHTINANLTDLQARALGIPLVKGFTQGE 74 (237)
T ss_dssp --CCSEEEEECCSSHHHHHHHHH-H--HHT---TCEEEEEEEEECC--------CCSSSHHHHHHHHHTCCEEEEEC---
T ss_pred CCCCCEEEEEecCcHHHHHHHHH-H--HHc---CCeEEEEEEEcCCCCCccccCCccHHHHHHHHHHcCCCEEEEECCCC
Confidence 66667999999998 45444333 1 122 3578777543211 2345679999999999986532
Q ss_pred CCHHHHHHHHHHh
Q psy13615 74 LILSNSLQVMQKV 86 (263)
Q Consensus 74 ~~~~~~~~i~~~l 86 (263)
+.+..+.+.+.+
T Consensus 75 -~~~e~e~l~~~l 86 (237)
T 3rjz_A 75 -KEKEVEDLKRVL 86 (237)
T ss_dssp ----CHHHHHHHH
T ss_pred -chHHHHHHHHHH
Confidence 123455555655
No 82
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=90.66 E-value=0.34 Score=51.11 Aligned_cols=62 Identities=18% Similarity=0.210 Sum_probs=44.6
Q ss_pred CCCeeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccc-cCCceeeecCcceeeeeCCCCCCC
Q psy13615 189 TGGMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEG-TVTAKVFSSRNRREKEDNPEEGDP 263 (263)
Q Consensus 189 TGgmga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~-~~~~~~~~~~~~~~~e~n~~~gdp 263 (263)
++.++..+|.+.++++..+++. ++..+++++ +.|.|...+.++.+ ..+ ...++|+|+|+|.+
T Consensus 254 ~~~~~e~~Pa~~l~~~~~~~i~-~~a~~i~~a-----lg~~G~~~vEf~vd~~dg-------~~~~iEiNpR~~~~ 316 (1165)
T 2qf7_A 254 NQKVVERAPAPYLSEAQRQELA-AYSLKIAGA-----TNYIGAGTVEYLMDADTG-------KFYFIEVNPRIQVE 316 (1165)
T ss_dssp TEEEEEEESCTTCCHHHHHHHH-HHHHHHHHH-----TTCCEEEEEEEEEETTTT-------EEEEEEEECSCCTT
T ss_pred ccceEEecccccCCHHHHHHHH-HHHHHHHHH-----cCCCcceeEEEEEECCCC-------CEEEEEEEcCCCCC
Confidence 4568888898888888877775 355555544 35789999999954 222 25789999999864
No 83
>3ac6_A Phosphoribosylformylglycinamidine synthase 2; purine metabolism, ATP-binding, ligase, nucleotide-binding, biosynthesis; HET: ADP; 2.35A {Thermus thermophilus} PDB: 3viu_A*
Probab=90.33 E-value=0.14 Score=51.17 Aligned_cols=87 Identities=13% Similarity=0.108 Sum_probs=56.6
Q ss_pred CEEEeeCCCCCCH------HHHHHHHHHh--ccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEEeecCCcCCccc
Q psy13615 64 PTKVSTYKHTLIL------SNSLQVMQKV--GAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVK 135 (263)
Q Consensus 64 P~~~v~~~~~~~~------~~~~~i~~~l--~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~~~~~~~in~hp 135 (263)
|..+++...+++. ...+++++++ .|++ +|+.++||+|...|++ ....+ +.+++.|.+++.+++. .
T Consensus 117 P~~~l~~l~~~~~~~~~~~~~l~~~~~Gi~~~~~~---~G~~lvgG~t~~~~~~-~~~~~-i~~~~vG~v~~~~~~~--~ 189 (725)
T 3ac6_A 117 PIALLDSLRFGPPEEARSRYLLKGVVSGIAFYGNA---IGVPTVGGDLYFHEGY-RENPL-VNAMCLGLLREEHLKR--S 189 (725)
T ss_dssp EEEEEEEEEESCTTSHHHHHHHHHHHHHHHHHHHH---HTCCEEEEEEEECGGG-SSSCE-EEEEEEEEEEGGGCCC--B
T ss_pred hHhheeeEEcCCCCCccHHHHHHHHHHHHHHHHHH---hCCCeeEEEEEEeCCc-CCCce-EEEEEEEEeChhhccc--C
Confidence 8877776555432 3567778777 5666 9999999999988774 32333 5566788777555442 4
Q ss_pred cccCCcEEEEec----CCCCCccccc
Q psy13615 136 DVAAGDVVIALP----SSGIHSNGFS 157 (263)
Q Consensus 136 sl~~g~~ii~Lp----~~G~~~~g~S 157 (263)
..++||+|+.+- ..|+|+..++
T Consensus 190 ~a~~GD~ii~~G~~~g~~G~gg~~~~ 215 (725)
T 3ac6_A 190 RASLGRPIYYAGAKTGRDGIGGAAFA 215 (725)
T ss_dssp CCCTTCEEEEEESCBCSCCC------
T ss_pred CCCCCCEEEEECCCCCCCcchHHHHH
Confidence 567899998764 5788876554
No 84
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}
Probab=90.10 E-value=0.44 Score=44.35 Aligned_cols=56 Identities=18% Similarity=0.106 Sum_probs=36.3
Q ss_pred eEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCCC
Q psy13615 193 GAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGD 262 (263)
Q Consensus 193 ga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~gd 262 (263)
..++|.+.++++..+++. ..+.+.+.+.|+ .|..+++++.+. .++.++|+|+|++.
T Consensus 244 ~~~~P~~~l~~~~~~~i~----~~a~~~~~~lg~--~g~~~ve~~~~~--------~~~~viEiN~R~~~ 299 (461)
T 2dzd_A 244 VEVAPSVSLSDELRQRIC----EAAVQLMRSVGY--VNAGTVEFLVSG--------DEFYFIEVNPRIQV 299 (461)
T ss_dssp EEEESCTTSCHHHHHHHH----HHHHHHHHHTTC--CEEEEEEEEEET--------TEEEEEEEESSCCG
T ss_pred EEECCcccCCHHHHHHHH----HHHHHHHHHcCC--CcceEEEEEEeC--------CCEEEEEEECCCCC
Confidence 345677667776655554 344455545555 466789998543 44578999999973
No 85
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=88.01 E-value=1.8 Score=45.07 Aligned_cols=65 Identities=20% Similarity=0.248 Sum_probs=46.0
Q ss_pred CCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeE-EEEeeccccccCCceeeecCcceeeeeCCCCC
Q psy13615 185 KGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFV-GEKKRGFTEGTVTAKVFSSRNRREKEDNPEEG 261 (263)
Q Consensus 185 ~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~-G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~g 261 (263)
.|..+|.....+|.+.++++..+++. +....+++.+ .|. |...+.++.+..+. ...++|+|+|++
T Consensus 240 ~~v~~g~s~~~~Pa~~l~~~~~~~l~-~~a~~i~~~l-----g~~~G~~~vdf~~~~~~g------~~~viEiNpR~~ 305 (1073)
T 1a9x_A 240 MGIHTGDSITVAPAQTLTDKEYQIMR-NASMAVLREI-----GVETGGSNVQFAVNPKNG------RLIVIEMNPRVS 305 (1073)
T ss_dssp TTSCGGGSCEEESCCSCCHHHHHHHH-HHHHHHHHHH-----TCCSEEEEEEEEECTTTC------CEEEEEEESSCC
T ss_pred CccccCcEEEEecCCCCCHHHHHHHH-HHHHHHHHHc-----CcccCceEEEEEEECCCC------CEEEEEecCCCC
Confidence 45677877777888778888877775 4444555554 367 99999999554221 346899999987
No 86
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=86.51 E-value=0.79 Score=38.19 Aligned_cols=59 Identities=22% Similarity=0.176 Sum_probs=38.3
Q ss_pred eccCCccEEEEEcCc--chhHHHHHHHhccccCCCCceEEEEEecCCC----ChhhHHHHHcCCCEEEeeCC
Q psy13615 6 RMVQRKRVAVLISGT--GTNLKSLLEATSNRSDIMRAEIVLVVSNKHN----VEGLNIARNAGIPTKVSTYK 71 (263)
Q Consensus 6 ~m~~~~riavl~SG~--Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~----a~gl~~A~~~gIP~~~v~~~ 71 (263)
.||.+.|+++..||. .+-+..++. + .+.++.++..|... ..+.+.|+++|||..+++..
T Consensus 2 ~~m~~~kv~v~~SGG~DS~~ll~ll~----~---~g~~v~~~~v~~~~~~~~~~~~~~a~~lgi~~~~~~~~ 66 (203)
T 3k32_A 2 NAMKLMDVHVLFSGGKDSSLSAVILK----K---LGYNPHLITINFGVIPSYKLAEETAKILGFKHKVITLD 66 (203)
T ss_dssp ----CEEEEEECCCSHHHHHHHHHHH----H---TTEEEEEEEEECSSSCTTHHHHHHHHHHTCEEEEEECC
T ss_pred CcccCCeEEEEEECcHHHHHHHHHHH----H---cCCCeEEEEEeCCCchHHHHHHHHHHHhCCCEEEEECC
Confidence 578888999999997 343444441 2 13577777777532 34677899999999988754
No 87
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=86.41 E-value=0.83 Score=40.22 Aligned_cols=67 Identities=21% Similarity=0.238 Sum_probs=34.9
Q ss_pred cCCCCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCC
Q psy13615 181 YNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEE 260 (263)
Q Consensus 181 ~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~ 260 (263)
++.+....+|+....+|.+ ++++..+++. ++...+.+. -| +.|..-+.++.+..+ .+.++|+|.|+
T Consensus 219 ~~~~~k~~~g~~~~~~P~~-l~~~~~~~l~-~~a~~~~~~---lg--~~G~~~vD~~~~~~g-------~~~vlEiN~~p 284 (317)
T 4eg0_A 219 YDYHAKYVANDTQYLIPCG-LPAEQETELK-RIARRAFDV---LG--CTDWGRADFMLDAAG-------NAYFLEVNTAP 284 (317)
T ss_dssp -----------CEEESSCS-SCHHHHHHHH-HHHHHHHHT---TT--CCSEEEEEEEECTTC-------CEEEEEEESSC
T ss_pred echhhcccCCCeeEEcCCC-CCHHHHHHHH-HHHHHHHHH---hC--CCceEEEEEEEeCCC-------CEEEEEeeCCC
Confidence 3444455667777777876 4666666554 333333332 24 467777888854322 25689999999
Q ss_pred C
Q psy13615 261 G 261 (263)
Q Consensus 261 g 261 (263)
|
T Consensus 285 g 285 (317)
T 4eg0_A 285 G 285 (317)
T ss_dssp C
T ss_pred C
Confidence 8
No 88
>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1
Probab=86.25 E-value=1.2 Score=39.83 Aligned_cols=55 Identities=29% Similarity=0.371 Sum_probs=39.5
Q ss_pred ccCCccEEEEEcCc-chhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEE
Q psy13615 7 MVQRKRVAVLISGT-GTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTK 66 (263)
Q Consensus 7 m~~~~riavl~SG~-Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~ 66 (263)
|+.+.||+++.+|. |+.+-..+.. +.. ..+++++++.+++..+.+.|+++|++..
T Consensus 1 M~~~irVaIIG~G~iG~~~~~~l~~---~~~--~~elvav~d~~~~~~~~~~a~~~g~~~~ 56 (312)
T 1nvm_B 1 MNQKLKVAIIGSGNIGTDLMIKVLR---NAK--YLEMGAMVGIDAASDGLARAQRMGVTTT 56 (312)
T ss_dssp CCSCEEEEEECCSHHHHHHHHHHHH---HCS--SEEEEEEECSCTTCHHHHHHHHTTCCEE
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHh---hCc--CeEEEEEEeCChhhhHHHHHHHcCCCcc
Confidence 66778999999998 7655444421 112 3688888887777768889999998743
No 89
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis}
Probab=84.58 E-value=2.1 Score=40.33 Aligned_cols=58 Identities=14% Similarity=0.043 Sum_probs=36.1
Q ss_pred CCCeeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEe-eccccccCCceeeecCc-ceeeeeCCCCC
Q psy13615 189 TGGMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKK-RGFTEGTVTAKVFSSRN-RREKEDNPEEG 261 (263)
Q Consensus 189 TGgmga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~-~gl~~~~~~~~~~~~~~-~~~~e~n~~~g 261 (263)
.+..+..+|.+ ++++..+++. +....+++.+ | |.|... +.++.+ ..| +.++|+|+|++
T Consensus 273 ~~~~~~~~Pa~-l~~~~~~~l~-~~a~~~~~al---G--~~g~~~~vef~~~--------~dg~~~~iEvNpR~~ 332 (474)
T 3vmm_A 273 FTETSHITPSI-LDEEAKKKIV-EAAKKANEGL---G--LQNCATHTEIKLM--------KNREPGLIESAARFA 332 (474)
T ss_dssp TBCCEEEESCC-CCHHHHHHHH-HHHHHHHHHH---T--CCSEEEEEEEEEE--------GGGEEEEEEEESSCC
T ss_pred ccceEEEECCC-CCHHHHHHHH-HHHHHHHHHc---C--CCCccEEEEEEEc--------CCCCEEEEEEeCCCC
Confidence 56677788875 5666666554 3333444443 4 556554 677633 333 57899999997
No 90
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Probab=84.41 E-value=0.94 Score=40.20 Aligned_cols=66 Identities=17% Similarity=0.252 Sum_probs=41.4
Q ss_pred cCCCCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCC
Q psy13615 181 YNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEE 260 (263)
Q Consensus 181 ~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~ 260 (263)
|+.+....+|+....+|.+ ++++..++++ ++..++.+++ | +.|...+.++.+ .+ .+.++|+|.|+
T Consensus 226 ~~~~~k~~~g~~~~~~Pa~-l~~~~~~~i~-~~a~~~~~al---g--~~G~~~vD~~~~-~g-------~~~vlEiN~rp 290 (322)
T 2fb9_A 226 YDYETKYTPGRAELLIPAP-LDPGTQETVQ-ELALKAYKVL---G--VRGMARVDFFLA-EG-------ELYLNELNTIP 290 (322)
T ss_dssp EETTTEEECCEEEEESSCC-CCTTHHHHHH-HHHHHHHHHH---T--CCSEEEEEEEEE-TT-------EEEEEEEESSC
T ss_pred cCHHHcccCCCeEEEeCCC-CCHHHHHHHH-HHHHHHHHHh---C--CceEEEEEEEEE-CC-------cEEEEEEECCC
Confidence 3344444456566667876 4666666664 4555555555 4 358888888855 22 24689999999
Q ss_pred C
Q psy13615 261 G 261 (263)
Q Consensus 261 g 261 (263)
|
T Consensus 291 g 291 (322)
T 2fb9_A 291 G 291 (322)
T ss_dssp C
T ss_pred C
Confidence 8
No 91
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=83.99 E-value=1.5 Score=39.72 Aligned_cols=32 Identities=16% Similarity=0.173 Sum_probs=24.1
Q ss_pred cCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCCC
Q psy13615 224 EGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGD 262 (263)
Q Consensus 224 eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~gd 262 (263)
+.+.|.|++.+.++.+..+ .+.++|+|+|+|+
T Consensus 246 ~~lg~~G~~~ve~~~~~~g-------~~~v~EinpR~~~ 277 (377)
T 3orq_A 246 QSIHFIGTFTVEFFIDSNN-------QLYVNEIAPRPHN 277 (377)
T ss_dssp TTSCCCEEEEEEEEEETTC-------CEEEEEEESSCCG
T ss_pred HHCCCeEEEEEEEEEeCCC-------cEEEEEeeCCcCC
Confidence 3456799999999965322 2568999999985
No 92
>1r0k_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH dependent, fosmidomycin, non- mevalonate pathway, oxidoreductase; 1.91A {Zymomonas mobilis} SCOP: a.69.3.1 c.2.1.3 d.81.1.3 PDB: 1r0l_A*
Probab=83.00 E-value=1.4 Score=40.93 Aligned_cols=58 Identities=24% Similarity=0.356 Sum_probs=41.9
Q ss_pred ccCCccEEEEEc-Cc-chhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEee
Q psy13615 7 MVQRKRVAVLIS-GT-GTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVST 69 (263)
Q Consensus 7 m~~~~riavl~S-G~-Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~ 69 (263)
|..|+||++|.| |+ |++.-.++.+ ..+ ..+++++.+++.-....+.+++++++...+.
T Consensus 1 m~~m~rI~ILGsTGSIG~~~l~vi~~---~p~--~~~v~al~ag~ni~~l~~~~~~f~~~~v~v~ 60 (388)
T 1r0k_A 1 MSQPRTVTVLGATGSIGHSTLDLIER---NLD--RYQVIALTANRNVKDLADAAKRTNAKRAVIA 60 (388)
T ss_dssp -CCCEEEEEETTTSHHHHHHHHHHHH---TGG--GEEEEEEEESSCHHHHHHHHHHTTCSEEEES
T ss_pred CCCceEEEEECCCeEeHHHHHHHHHh---CcC--cEEEEEEEcCCCHHHHHHHHHHcCCcEEEEc
Confidence 555689999999 88 9887777743 112 2588888777655566788999998877664
No 93
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A
Probab=82.39 E-value=2.4 Score=40.80 Aligned_cols=56 Identities=16% Similarity=0.075 Sum_probs=38.0
Q ss_pred EECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCCC
Q psy13615 194 AYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGD 262 (263)
Q Consensus 194 a~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~gd 262 (263)
..+|.+.++++..+++. +...++.+++ .|+|...+.++.+..+ ...++|+|+|++.
T Consensus 312 e~~Pa~~l~~~~~~~l~-~~a~~~~~al-----G~~G~~~VEf~~d~dg-------~~~~lEiNpR~~~ 367 (540)
T 3glk_A 312 EEAPATIAPLAIFEFME-QCAIRLAKTV-----GYVSAGTVEYLYSQDG-------SFHFLELNPRLQV 367 (540)
T ss_dssp EEESCTTSCHHHHHHHH-HHHHHHHHHH-----TCCEEEEEEEEEETTS-------CEEEEEEECSCCT
T ss_pred EecCCCCCCHHHHHHHH-HHHHHHHHHc-----CCccceEEEEEEcCCC-------CEEEEEEECCCCC
Confidence 44687777888877775 4444444444 4779999999843222 2578999999973
No 94
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A*
Probab=81.90 E-value=2.6 Score=41.11 Aligned_cols=57 Identities=16% Similarity=0.054 Sum_probs=38.8
Q ss_pred eEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCCC
Q psy13615 193 GAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGD 262 (263)
Q Consensus 193 ga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~gd 262 (263)
...+|.+.++++..+++. +....+.+.+ .|+|...+.++.+..+ ...++|+|+|++.
T Consensus 327 ie~aPa~~l~~~~~~~i~-~~A~~~a~al-----Gy~G~~~VEfl~d~dG-------~~yflEINpRl~~ 383 (587)
T 3jrx_A 327 VEEAPATIAPLAIFEFME-QCAIRLAKTV-----GYVSAGTVEYLYSQDG-------SFHFLELNPRLQV 383 (587)
T ss_dssp EEEESCCSSCHHHHHHHH-HHHHHHHHHH-----TCCEEEEEEEEECSSS-------CEEEEEEESSCCT
T ss_pred eEecCCCCCCHHHHHHHH-HHHHHHHHHc-----CCcceeEEEEEEeCCC-------CEEEEEEeCCCCC
Confidence 344688877888877775 4444444444 4789999999854322 2578999999973
No 95
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=81.86 E-value=2.3 Score=39.25 Aligned_cols=56 Identities=16% Similarity=0.121 Sum_probs=36.3
Q ss_pred eEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCC
Q psy13615 193 GAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEG 261 (263)
Q Consensus 193 ga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~g 261 (263)
+..+|.+.++++..+++. +...+++++ +.|.|...+.++.+..+ ++.++|+|+|++
T Consensus 243 ~~~~p~~~l~~~~~~~l~-~~a~~~~~~-----lg~~G~~~ve~~~~~~g-------~~~~iEiNpR~~ 298 (446)
T 3ouz_A 243 IEESPAILLDEKTRTRLH-ETAIKAAKA-----IGYEGAGTFEFLVDKNL-------DFYFIEMNTRLQ 298 (446)
T ss_dssp EEEESCTTSCHHHHHHHH-HHHHHHHHH-----TTCCEEEEEEEEECTTC-------CEEEEEEESSCC
T ss_pred EEECCCCCCCHHHHHHHH-HHHHHHHHH-----cCCCCceEEEEEEeCCC-------CEEEEEeECCCC
Confidence 345677667777776665 333333333 34679888899854431 457899999996
No 96
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=81.63 E-value=5.2 Score=35.84 Aligned_cols=66 Identities=15% Similarity=0.160 Sum_probs=38.8
Q ss_pred CCCCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCC
Q psy13615 182 NNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEG 261 (263)
Q Consensus 182 ~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~g 261 (263)
+.+.....+......|.+ ++++..++++ ++-.++.+++ | +.|..-+.++.+..| + +.++|+|.++|
T Consensus 253 d~~~k~~~~~~~~~~pa~-l~~~~~~~i~-~~A~~~~~aL---g--~~G~~~VDf~~~~dg-~------~~vlEvNt~PG 318 (357)
T 4fu0_A 253 DYTEKYTLKSSKIYMPAR-IDAEAEKRIQ-EAAVTIYKAL---G--CSGFSRVDMFYTPSG-E------IVFNEVNTIPG 318 (357)
T ss_dssp TSCSBCSSCCEEEESSCS-CCHHHHHHHH-HHHHHHHHHT---T--CCEEEEEEEEECTTC-C------EEEEEEESSCC
T ss_pred cccccccCCCceEecCCC-CCHHHHHHHH-HHHHHHHHHh---C--CcceEEEEEEEeCCC-C------EEEEEEeCCCC
Confidence 333344444444455655 4677766664 3333444433 4 568888888854432 1 46899999998
No 97
>3a06_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; MEP pathway, isoprene biosynthesis, metal- NADP, oxidoreductase; HET: NDP; 2.00A {Thermotoga maritima} PDB: 3a14_A*
Probab=79.02 E-value=2.3 Score=39.23 Aligned_cols=55 Identities=13% Similarity=0.184 Sum_probs=41.4
Q ss_pred CccEEEEEc-Cc-chhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeC
Q psy13615 10 RKRVAVLIS-GT-GTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTY 70 (263)
Q Consensus 10 ~~riavl~S-G~-Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~ 70 (263)
++||++|+| |+ |++...++.+ . + .++++++.+++.-..-.+.|++++.++..+..
T Consensus 3 ~k~i~ILGsTGSIG~~tldVi~~---~-~--~~~vvaL~a~~n~~~l~~q~~~f~p~~v~v~~ 59 (376)
T 3a06_A 3 ERTLVILGATGSIGTQTLDVLKK---V-K--GIRLIGISFHSNLELAFKIVKEFNVKNVAITG 59 (376)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHH---S-C--SEEEEEEEESSCHHHHHHHHHHHTCCEEEECS
T ss_pred cceEEEECCCCHHHHHHHHHHHh---C-C--CeEEEEEEccCCHHHHHHHHHHcCCCEEEEcc
Confidence 479999996 77 8886666633 2 2 37999998876556668889999988776654
No 98
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=77.62 E-value=2.4 Score=42.01 Aligned_cols=57 Identities=14% Similarity=0.063 Sum_probs=38.1
Q ss_pred eeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCC
Q psy13615 192 MGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEG 261 (263)
Q Consensus 192 mga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~g 261 (263)
.+..+|.|.++++..+++. +....++++ +.|.|...+.++.+..+ ...++|+|+|++
T Consensus 264 ~ie~~Pa~~l~~~~~~~l~-~~a~~~~~a-----lg~~G~~~vEf~~~~dG-------~~~~iEiNpR~~ 320 (675)
T 3u9t_A 264 VVEEAPAPGLGAELRRAMG-EAAVRAAQA-----IGYVGAGTVEFLLDERG-------QFFFMEMNTRLQ 320 (675)
T ss_dssp CEEEESCSSCCHHHHHHHH-HHHHHHHHH-----TTCCSEEEEECCBCTTS-------CBCBCEEESSCC
T ss_pred EEEECCCCCCCHHHHHHHH-HHHHHHHHH-----cCCccceEEEEEEcCCC-------CEEEEecccccc
Confidence 3456788878888777765 333333333 34689999999855422 257899999995
No 99
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=77.13 E-value=3.7 Score=43.56 Aligned_cols=59 Identities=14% Similarity=-0.011 Sum_probs=40.8
Q ss_pred CeeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCC
Q psy13615 191 GMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEG 261 (263)
Q Consensus 191 gmga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~g 261 (263)
.++..+|.+.++++..+++.+ ...+++++ +.|+|...+.++.+..+ .+..++|+|+|++
T Consensus 265 k~~e~~Pa~~l~~~~~~~l~~-~a~~~~~a-----lg~~G~~~VEfivd~d~------g~~y~iEINpRl~ 323 (1236)
T 3va7_A 265 KVIEETPAPNLPEATRAKMRA-ASERLGSL-----LKYKCAGTVEFIYDEQR------DEFYFLEVNARLQ 323 (1236)
T ss_dssp EEEEEESCSSCCHHHHHHHHH-HHHHHHHH-----TTCEEEEEEEEEEETTT------TEEEEEEEECSCC
T ss_pred ceEEEcCCCCCCHHHHHHHHH-HHHHHHHH-----cCCcceEEEEEEEECCC------CcEEEEEEECCCC
Confidence 355667888888888777753 33344333 46889999999954321 2457899999994
No 100
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=74.86 E-value=3 Score=41.30 Aligned_cols=56 Identities=14% Similarity=0.091 Sum_probs=36.8
Q ss_pred eEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCC
Q psy13615 193 GAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEG 261 (263)
Q Consensus 193 ga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~g 261 (263)
+..+|.|.++++..+++.+ ... +.+ +.+.|.|...+.++.+..+ ...++|+|+|++
T Consensus 239 ~e~~Pa~~l~~~~~~~l~~-~a~---~~~--~alg~~G~~~vEf~~d~dg-------~~~~lEiNpR~~ 294 (681)
T 3n6r_A 239 VEEAPSPFLDEATRRAMGE-QAV---ALA--KAVGYASAGTVEFIVDGQK-------NFYFLEMNTRLQ 294 (681)
T ss_dssp EEEESCSSCCHHHHHHHHH-HHH---HHH--HTTTCCSEEEEEEEECTTS-------CCCCCEEECSCC
T ss_pred EEecCCCCCCHHHHHHHHH-HHH---HHH--HHcCCCceEEEEEEEeCCC-------CEEEEecccccC
Confidence 4467888788887776652 222 222 2445779998999854322 157889999994
No 101
>2zod_A Selenide, water dikinase; FULL-length selenophosphate synthetase, transferase, ATP- binding, magnesium, nucleotide-binding, selenium; 1.98A {Aquifex aeolicus} SCOP: d.79.4.1 d.139.1.1 PDB: 2yye_A 2zau_A
Probab=72.81 E-value=5.1 Score=35.96 Aligned_cols=81 Identities=14% Similarity=0.134 Sum_probs=52.8
Q ss_pred HHHHHcCCCEEEeeCCCCC----CHHHHHHHHHHh--ccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEEeecCC
Q psy13615 56 NIARNAGIPTKVSTYKHTL----ILSNSLQVMQKV--GAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAVEKAS 129 (263)
Q Consensus 56 ~~A~~~gIP~~~v~~~~~~----~~~~~~~i~~~l--~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~~~~~~ 129 (263)
+.|..-+-|...+....+. +.+..+++++++ .|++ +++.++||.|..-|.. . +...+.+++++++
T Consensus 92 DiaAmGa~P~~~l~~l~~p~~~~~~~~l~~~~~Gi~~~~~~---~gv~lvGGdt~~~~~~----~--i~~t~~G~~~~~~ 162 (345)
T 2zod_A 92 DVYAMGGIPVNALAISCFNNCELDIEIFREVIRGALDKLRE---AKTVLLGGHTIDDKEP----K--FGLSVAGICPEGK 162 (345)
T ss_dssp HHHHTTCEEEEEEEEEEECTTTCCHHHHHHHHHHHHHHHHH---TTCEEEEEEEEECSSC----E--EEEEEEEECGGGC
T ss_pred HHHHcCCCchhhhhhhhcCCCcCCHHHHHHHHHHHHHHHHh---ccCcccCCceEECCcC----c--ccceeEEEecCcc
Confidence 3344455687665443332 236778888888 6666 9999999999764321 2 3334566776666
Q ss_pred cCCccccccCCcEEEEe
Q psy13615 130 LLPKVKDVAAGDVVIAL 146 (263)
Q Consensus 130 ~in~hpsl~~g~~ii~L 146 (263)
++.. ...++||+|+.-
T Consensus 163 ~~~~-~~a~~GD~iivt 178 (345)
T 2zod_A 163 YITQ-SGAQVGQLLILT 178 (345)
T ss_dssp CCCS-SCCCTTCEEEEC
T ss_pred cccc-ccCCCCCeEEEc
Confidence 6665 566899999853
No 102
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=72.44 E-value=3.7 Score=35.81 Aligned_cols=30 Identities=23% Similarity=0.227 Sum_probs=22.4
Q ss_pred CCCeEEEEeeccccccCCceeeecCcceeeeeCCCCCC
Q psy13615 225 GTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGD 262 (263)
Q Consensus 225 g~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~gd 262 (263)
.+.|.|...+.++.++ .++.++|+|+|+|.
T Consensus 245 ~lg~~G~~~vd~~~~~--------g~~~~iEiN~R~~g 274 (331)
T 2pn1_A 245 GSGLVGPLDFDLFDVA--------GTLYLSEINPRFGG 274 (331)
T ss_dssp TTCCCEEEEEEEEEET--------TEEEEEEEESSCCT
T ss_pred HhCCcceEEEEEEEcC--------CCEEEEEEeCCCCC
Confidence 3457899999998433 23468899999985
No 103
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=70.85 E-value=6.7 Score=41.27 Aligned_cols=56 Identities=16% Similarity=0.148 Sum_probs=37.7
Q ss_pred eeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCC
Q psy13615 192 MGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEG 261 (263)
Q Consensus 192 mga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~g 261 (263)
....+|.+.++++..+++. +....+++ .- .|+|...+.++ ++..++.++|+|+|++
T Consensus 241 ~~e~~Pa~~l~~~~~~~l~-~~a~~~~~---al--G~~G~~~vEfl--------vd~d~~y~iEINpR~~ 296 (1150)
T 3hbl_A 241 VVEVAPSVGLSPTLRQRIC-DAAIQLME---NI--KYVNAGTVEFL--------VSGDEFFFIEVNPRVQ 296 (1150)
T ss_dssp EEEESSCSSCCHHHHHHHH-HHHHHHHH---HT--TCCEEEEEEEE--------EETTEEEEEEEECSCC
T ss_pred eEEecCCCCCCHHHHHHHH-HHHHHHHH---Hc--CCCceEEEEEE--------EECCeEEEEEEeCCCC
Confidence 4567888878888776664 33333333 22 46788888887 4444668999999996
No 104
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A*
Probab=68.73 E-value=7.1 Score=35.54 Aligned_cols=56 Identities=9% Similarity=-0.044 Sum_probs=37.7
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHHHhc-CCCeEEEEeeccccccCCceeeecCcceeeeeCCCCC
Q psy13615 197 PCDILTEAQKKEIHDTILMRVIKKMIAE-GTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEG 261 (263)
Q Consensus 197 pv~i~~~~~~~~i~~~il~~~i~~~~~e-g~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~g 261 (263)
|.+ ++++..+++. ++...+++++.+. +-.+.|.+.+.++.+..+ .+.|.|+|+|+|
T Consensus 260 Pa~-l~~~~~~~a~-~~a~~v~~al~~~~~~~~~G~~~vE~fvt~dg-------~i~V~EIapR~g 316 (361)
T 2r7k_A 260 PVV-IRESLLPQVF-EMGDKLVAKAKELVPPGMIGPFCLQSLCNENL-------ELVVFEMSARVD 316 (361)
T ss_dssp ECC-CCGGGHHHHH-HHHHHHHHHHHHHSTTCCCEEEEEEEEECTTS-------CEEEEEEESSBC
T ss_pred CCc-CCHHHHHHHH-HHHHHHHHHHHhhccCCccceEEEEEEEcCCC-------CEEEEEEcCCCC
Confidence 554 4566666664 6666677776422 225799999999955433 246889999997
No 105
>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*
Probab=68.73 E-value=9.2 Score=36.15 Aligned_cols=61 Identities=11% Similarity=0.059 Sum_probs=43.8
Q ss_pred eeeeccCCccEEEEEcCc--chhHHHHHHHhccccCCCCceEEEEEecCCC------ChhhHHHHHcCC-CEEEeeC
Q psy13615 3 VKTRMVQRKRVAVLISGT--GTNLKSLLEATSNRSDIMRAEIVLVVSNKHN------VEGLNIARNAGI-PTKVSTY 70 (263)
Q Consensus 3 ~~~~m~~~~riavl~SG~--Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~------a~gl~~A~~~gI-P~~~v~~ 70 (263)
|-..+..+.|+++..||. -|.+..++. +. +.+|+++..|... ..+-+.|+++|| |.++++.
T Consensus 3 ~~~~l~~~~KVvVA~SGGlDSSvll~~L~----e~---G~eViavtvd~Gq~~~~ele~a~~~A~~lGi~~~~vvD~ 72 (455)
T 1k92_A 3 ILKHLPVGQRIGIAFSGGLDTSAALLWMR----QK---GAVPYAYTANLGQPDEEDYDAIPRRAMEYGAENARLIDC 72 (455)
T ss_dssp EECSCCTTSEEEEECCSSHHHHHHHHHHH----HT---TCEEEEEEEECCCTTCSCTTHHHHHHHHHTCSEEEEEEC
T ss_pred hhhhhcCCCeEEEEEcChHHHHHHHHHHH----Hc---CCEEEEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 556677788999999998 444444441 21 4689998888432 356788999999 7888875
No 106
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}
Probab=66.07 E-value=4.4 Score=35.30 Aligned_cols=53 Identities=17% Similarity=0.255 Sum_probs=27.8
Q ss_pred eccCCccEEEEEcCc-chh-HHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCE
Q psy13615 6 RMVQRKRVAVLISGT-GTN-LKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPT 65 (263)
Q Consensus 6 ~m~~~~riavl~SG~-Gsn-l~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~ 65 (263)
.||.++||+++..|. |.. +...+. +.. ..++++|.+.++ ..+-+.|+++|++.
T Consensus 2 ~~M~~~~igiIG~G~~g~~~~~~~l~----~~~--~~~l~av~d~~~-~~~~~~a~~~~~~~ 56 (308)
T 3uuw_A 2 NAMKNIKMGMIGLGSIAQKAYLPILT----KSE--RFEFVGAFTPNK-VKREKICSDYRIMP 56 (308)
T ss_dssp ---CCCEEEEECCSHHHHHHTHHHHT----SCS--SSEEEEEECSCH-HHHHHHHHHHTCCB
T ss_pred CccccCcEEEEecCHHHHHHHHHHHH----hCC--CeEEEEEECCCH-HHHHHHHHHcCCCC
Confidence 577788999999997 653 333331 111 356666554332 23344455666653
No 107
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Probab=64.68 E-value=6.4 Score=33.05 Aligned_cols=24 Identities=25% Similarity=0.094 Sum_probs=17.3
Q ss_pred EEEeeccccccCCceeeecCcceeeeeCCCCC
Q psy13615 230 GEKKRGFTEGTVTAKVFSSRNRREKEDNPEEG 261 (263)
Q Consensus 230 G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~g 261 (263)
|...+.++. +..|+.++|+|+|+|
T Consensus 232 g~~~vD~~~--------~~~g~~~iEiN~r~g 255 (280)
T 1uc8_A 232 GVVAVDLFE--------SERGLLVNEVNHTME 255 (280)
T ss_dssp SEEEEEEEE--------ETTEEEEEEEETTCC
T ss_pred CeEEEEEEE--------eCCCeEEEEEeCCCC
Confidence 556677774 334567899999987
No 108
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=64.14 E-value=13 Score=30.29 Aligned_cols=56 Identities=16% Similarity=0.177 Sum_probs=36.1
Q ss_pred CCccEEEEEcCc--chhHHHHHHHhccccCCCCceEEEEEecCCCC------hhhHHHHHcCCCEEEeeCC
Q psy13615 9 QRKRVAVLISGT--GTNLKSLLEATSNRSDIMRAEIVLVVSNKHNV------EGLNIARNAGIPTKVSTYK 71 (263)
Q Consensus 9 ~~~riavl~SG~--Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a------~gl~~A~~~gIP~~~v~~~ 71 (263)
.+.|+++..||. .|-+..++. +.+ .++.++..|.... .+.+.|+++|||..+++..
T Consensus 2 ~~~~v~v~lSGG~DS~~ll~ll~----~~~---~~v~~~~~~~~~~~~~e~~~a~~~a~~lgi~~~~~~~~ 65 (219)
T 3bl5_A 2 KKEKAIVVFSGGQDSTTCLLWAL----KEF---EEVETVTFHYNQRHSQEVEVAKSIAEKLGVKNHLLDMS 65 (219)
T ss_dssp -CCEEEEECCSSHHHHHHHHHHH----HHC---SEEEEEEEESSCTTCHHHHHHHHHHHTTCCCEEEEECG
T ss_pred CCCCEEEEccCcHHHHHHHHHHH----HcC---CceEEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEeCh
Confidence 456899999998 333344442 112 4677777775432 3456678899999988754
No 109
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=63.80 E-value=17 Score=31.46 Aligned_cols=59 Identities=15% Similarity=0.212 Sum_probs=31.4
Q ss_pred ccCC--ccEEEEEcCcchhHH---HHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCC
Q psy13615 7 MVQR--KRVAVLISGTGTNLK---SLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYK 71 (263)
Q Consensus 7 m~~~--~riavl~SG~Gsnl~---al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~ 71 (263)
||++ +||.++.+|.|.-.. .|.++.. + .+.+|.++..... ...+..++.|+++..+...
T Consensus 1 mM~~m~mkIl~~~~~~gG~~~~~~~la~~L~-~---~G~~V~v~~~~~~--~~~~~~~~~g~~~~~~~~~ 64 (364)
T 1f0k_A 1 MMSGQGKRLMVMAGGTGGHVFPGLAVAHHLM-A---QGWQVRWLGTADR--MEADLVPKHGIEIDFIRIS 64 (364)
T ss_dssp ------CEEEEECCSSHHHHHHHHHHHHHHH-T---TTCEEEEEECTTS--THHHHGGGGTCEEEECCCC
T ss_pred CCCCCCcEEEEEeCCCccchhHHHHHHHHHH-H---cCCEEEEEecCCc--chhhhccccCCceEEecCC
Confidence 4444 799988777653333 4444322 1 2468876655432 1223455679998877654
No 110
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=61.33 E-value=26 Score=30.27 Aligned_cols=76 Identities=12% Similarity=0.145 Sum_probs=40.6
Q ss_pred ccCCccEEEEEc-----Ccc--hhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCC-CCHHH
Q psy13615 7 MVQRKRVAVLIS-----GTG--TNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHT-LILSN 78 (263)
Q Consensus 7 m~~~~riavl~S-----G~G--snl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~-~~~~~ 78 (263)
|+.++||+++.. ..| +-+..++++ .. +.+|.++..+......-......++++..+..... .....
T Consensus 1 M~~~mkIl~v~~~~~p~~gG~~~~~~~l~~~----L~--g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (394)
T 3okp_A 1 MSASRKTLVVTNDFPPRIGGIQSYLRDFIAT----QD--PESIVVFASTQNAEEAHAYDKTLDYEVIRWPRSVMLPTPTT 74 (394)
T ss_dssp ---CCCEEEEESCCTTSCSHHHHHHHHHHTT----SC--GGGEEEEEECSSHHHHHHHHTTCSSEEEEESSSSCCSCHHH
T ss_pred CCCCceEEEEeCccCCccchHHHHHHHHHHH----hc--CCeEEEEECCCCccchhhhccccceEEEEccccccccchhh
Confidence 788899998875 123 333444422 11 46887777766443223444567788777765433 23344
Q ss_pred HHHHHHHhcccc
Q psy13615 79 SLQVMQKVGAKY 90 (263)
Q Consensus 79 ~~~i~~~l~~~~ 90 (263)
...+.+.+ ++
T Consensus 75 ~~~l~~~~--~~ 84 (394)
T 3okp_A 75 AHAMAEII--RE 84 (394)
T ss_dssp HHHHHHHH--HH
T ss_pred HHHHHHHH--Hh
Confidence 55555555 55
No 111
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*
Probab=60.97 E-value=7.3 Score=34.64 Aligned_cols=55 Identities=22% Similarity=0.239 Sum_probs=29.1
Q ss_pred eeeeccC--CccEEEEEcCc-chhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCC
Q psy13615 3 VKTRMVQ--RKRVAVLISGT-GTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGI 63 (263)
Q Consensus 3 ~~~~m~~--~~riavl~SG~-Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gI 63 (263)
+.++|+. +.||+++..|. |......+.+ ... ..++++|+..++ ....+.|+++|+
T Consensus 4 ~~~~m~~~~~~rvgiiG~G~~g~~~~~~l~~---~~~--~~~lvav~d~~~-~~~~~~~~~~~~ 61 (354)
T 3q2i_A 4 IVIPPITDRKIRFALVGCGRIANNHFGALEK---HAD--RAELIDVCDIDP-AALKAAVERTGA 61 (354)
T ss_dssp CCCCCCCSSCEEEEEECCSTTHHHHHHHHHH---TTT--TEEEEEEECSSH-HHHHHHHHHHCC
T ss_pred EEeecCCCCcceEEEEcCcHHHHHHHHHHHh---CCC--CeEEEEEEcCCH-HHHHHHHHHcCC
Confidence 4577774 56889998886 6543333311 101 356666554332 233344555665
No 112
>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}
Probab=60.53 E-value=11 Score=34.12 Aligned_cols=53 Identities=19% Similarity=0.218 Sum_probs=33.6
Q ss_pred eccCCccEEEEEcCc----chhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCC
Q psy13615 6 RMVQRKRVAVLISGT----GTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIP 64 (263)
Q Consensus 6 ~m~~~~riavl~SG~----Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP 64 (263)
++|.+.||+++..|. |......+. ..+ ..+++++++|+....+.+.|+++|+|
T Consensus 8 ~~m~~~rvgiiG~G~~~~ig~~h~~~~~----~~~--~~~lva~v~d~~~~~a~~~a~~~g~~ 64 (398)
T 3dty_A 8 RIPQPIRWAMVGGGSQSQIGYIHRCAAL----RDN--TFVLVAGAFDIDPIRGSAFGEQLGVD 64 (398)
T ss_dssp CSCSCEEEEEEECCTTCSSHHHHHHHHH----GGG--SEEEEEEECCSSHHHHHHHHHHTTCC
T ss_pred cccCcceEEEEcCCccchhHHHHHHHHh----hCC--CeEEEEEEeCCCHHHHHHHHHHhCCC
Confidence 345678999999996 433222221 112 36888767766445566778888886
No 113
>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*
Probab=60.17 E-value=9.2 Score=34.89 Aligned_cols=51 Identities=22% Similarity=0.279 Sum_probs=33.2
Q ss_pred CccEEEEEcCcchhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEE
Q psy13615 10 RKRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTK 66 (263)
Q Consensus 10 ~~riavl~SG~Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~ 66 (263)
+.||+|.++|-|.. -+++.. +.. -..++++|++.+ ...+.+.|+++|+|++
T Consensus 7 ~~rv~VvG~G~g~~---h~~a~~-~~~-~~~elvav~~~~-~~~a~~~a~~~gv~~~ 57 (372)
T 4gmf_A 7 KQRVLIVGAKFGEM---YLNAFM-QPP-EGLELVGLLAQG-SARSRELAHAFGIPLY 57 (372)
T ss_dssp CEEEEEECSTTTHH---HHHTTS-SCC-TTEEEEEEECCS-SHHHHHHHHHTTCCEE
T ss_pred CCEEEEEehHHHHH---HHHHHH-hCC-CCeEEEEEECCC-HHHHHHHHHHhCCCEE
Confidence 67899998887753 222221 111 136888887755 3466788999999964
No 114
>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}
Probab=59.31 E-value=7 Score=35.88 Aligned_cols=56 Identities=18% Similarity=0.174 Sum_probs=30.2
Q ss_pred eccCCccEEEEEcCcchhHH-HHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCC
Q psy13615 6 RMVQRKRVAVLISGTGTNLK-SLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIP 64 (263)
Q Consensus 6 ~m~~~~riavl~SG~Gsnl~-al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP 64 (263)
.||.+.||+++..|+|+-+- ..+.+.. ..+ ..++++.++++....+.+.|+++|+|
T Consensus 33 ~~m~~~rvgiiG~G~~~~ig~~h~~~~~-~~~--~~~lva~v~d~~~~~a~~~a~~~g~~ 89 (417)
T 3v5n_A 33 TRQKRIRLGMVGGGSGAFIGAVHRIAAR-LDD--HYELVAGALSSTPEKAEASGRELGLD 89 (417)
T ss_dssp --CCCEEEEEESCC--CHHHHHHHHHHH-HTS--CEEEEEEECCSSHHHHHHHHHHHTCC
T ss_pred ccCCcceEEEEcCCCchHHHHHHHHHHh-hCC--CcEEEEEEeCCCHHHHHHHHHHcCCC
Confidence 44567899999999633221 1111111 112 26788756665445556678888886
No 115
>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}
Probab=55.78 E-value=9.4 Score=34.65 Aligned_cols=62 Identities=13% Similarity=0.096 Sum_probs=32.6
Q ss_pred eccCCccEEEEEcCc-chhHHHHHHHhccccCC--CCceEEEEEecCCCChhhHHHHHcCCCEEEe
Q psy13615 6 RMVQRKRVAVLISGT-GTNLKSLLEATSNRSDI--MRAEIVLVVSNKHNVEGLNIARNAGIPTKVS 68 (263)
Q Consensus 6 ~m~~~~riavl~SG~-Gsnl~al~~~~~~~~~~--l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v 68 (263)
.|.++.||+|+..|. |......+.+....... -..++++|+.-+ ...+-+.|+++|+|..+-
T Consensus 22 ~Ms~klrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~-~~~a~~~a~~~~~~~~y~ 86 (412)
T 4gqa_A 22 SMSARLNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQD-QAMAERHAAKLGAEKAYG 86 (412)
T ss_dssp ---CEEEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSS-HHHHHHHHHHHTCSEEES
T ss_pred cccccceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCC-HHHHHHHHHHcCCCeEEC
Confidence 488888999999987 54322222110000001 135777766543 344566778888875543
No 116
>3imk_A Putative molybdenum carrier protein; YP_461806.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE MES PG4 PG6; 1.45A {Syntrophus aciditrophicus SB}
Probab=55.76 E-value=43 Score=27.03 Aligned_cols=59 Identities=14% Similarity=0.023 Sum_probs=43.2
Q ss_pred ceEEEEEecCCCChh----hHHHHHcCCCEEEeeCCCCCCHHHHHHHHHHhccccCCCCceeeeccccccCCCCcCCCcE
Q psy13615 40 AEIVLVVSNKHNVEG----LNIARNAGIPTKVSTYKHTLILSNSLQVMQKVGAKYSDIAPFSQDGGETAELPGLYQPGDY 115 (263)
Q Consensus 40 ~~iv~Visn~~~a~g----l~~A~~~gIP~~~v~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~gge~~~l~~~~~~d~i 115 (263)
.|-.++++......| ++.|++++=|+.+++............+.+.+ .+ +++...
T Consensus 74 SDgTLI~~~g~lsGGT~lT~~~a~~~~KP~l~i~l~~~~~~~~~~~v~~wl--~~-------------------~~i~vL 132 (158)
T 3imk_A 74 SDGTLIISHGILKGGSALTEFFAEQYKKPCLHIDLDRISIEDAATLINSWT--VS-------------------HHIQVL 132 (158)
T ss_dssp SSEEEEEESSSCCHHHHHHHHHHHHTTCCEEEEETTTSCHHHHHHHHHHHH--HH-------------------TTCCEE
T ss_pred cCeEEEEecCCCCCchHHHHHHHHHhCCCEEEEecccccccchHHHHHHHH--HH-------------------CCceEE
Confidence 577888886666655 88999999999999876543345555666666 56 777777
Q ss_pred EEee
Q psy13615 116 DLAG 119 (263)
Q Consensus 116 ~LAG 119 (263)
.+||
T Consensus 133 NVAG 136 (158)
T 3imk_A 133 NIAG 136 (158)
T ss_dssp EEEC
T ss_pred Eecc
Confidence 7877
No 117
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}
Probab=55.32 E-value=8 Score=34.34 Aligned_cols=51 Identities=14% Similarity=0.154 Sum_probs=26.5
Q ss_pred ccCCccEEEEEcCc-chhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCC
Q psy13615 7 MVQRKRVAVLISGT-GTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIP 64 (263)
Q Consensus 7 m~~~~riavl~SG~-Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP 64 (263)
|+.+.||+++..|. |..+...+ . +.. ..++++|..-+ ...+.+.|+++|++
T Consensus 2 M~~~~~vgiiG~G~~g~~~~~~l---~-~~~--~~~lvav~d~~-~~~~~~~~~~~g~~ 53 (354)
T 3db2_A 2 MYNPVGVAAIGLGRWAYVMADAY---T-KSE--KLKLVTCYSRT-EDKREKFGKRYNCA 53 (354)
T ss_dssp CCCCEEEEEECCSHHHHHHHHHH---T-TCS--SEEEEEEECSS-HHHHHHHHHHHTCC
T ss_pred CCCcceEEEEccCHHHHHHHHHH---H-hCC--CcEEEEEECCC-HHHHHHHHHHcCCC
Confidence 77778999998887 54333222 1 111 35665554332 22333445555554
No 118
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus}
Probab=54.56 E-value=17 Score=31.81 Aligned_cols=52 Identities=13% Similarity=0.116 Sum_probs=31.1
Q ss_pred ECcccCCCHHHHHHHHHHHHHHHHHHHHhcCC-CeEEEEeeccccccCCceeeecCcceeeeeCCCCCC
Q psy13615 195 YCPCDILTEAQKKEIHDTILMRVIKKMIAEGT-PFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGD 262 (263)
Q Consensus 195 ~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~-~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~gd 262 (263)
..|.+ ++++..+++. ++..++++ .+ .+.|...+.++.+ .++.++|+|+|+|-
T Consensus 199 ~~p~~-l~~~~~~~i~-~~a~~~~~-----~l~g~~G~~~vD~~~~---------~~~~viEiNpR~~~ 251 (305)
T 3df7_A 199 VVPAR-ISDEVKREVV-EEAVRAVE-----CVEGLNGYVGVDIVYS---------DQPYVIEINARLTT 251 (305)
T ss_dssp EESCC-CCHHHHHHHH-HHHHHHHT-----TSTTCCEEEEEEEEES---------SSEEEEEEESSCCG
T ss_pred cccCC-CCHHHHHHHH-HHHHHHHH-----HcCCCcCceEEEEEEC---------CCEEEEEEcCCCCC
Confidence 44544 3555555553 33333332 33 4578888888853 23578999999983
No 119
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}
Probab=53.72 E-value=11 Score=33.34 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=13.9
Q ss_pred ccCCccEEEEEcCc-chhHHHHH
Q psy13615 7 MVQRKRVAVLISGT-GTNLKSLL 28 (263)
Q Consensus 7 m~~~~riavl~SG~-Gsnl~al~ 28 (263)
|+.+.||+++..|. |+.+...+
T Consensus 1 M~~~~rvgiiG~G~~g~~~~~~l 23 (344)
T 3euw_A 1 MSLTLRIALFGAGRIGHVHAANI 23 (344)
T ss_dssp --CCEEEEEECCSHHHHHHHHHH
T ss_pred CCCceEEEEECCcHHHHHHHHHH
Confidence 66677999999988 65443333
No 120
>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}
Probab=52.61 E-value=19 Score=29.64 Aligned_cols=52 Identities=10% Similarity=0.190 Sum_probs=31.2
Q ss_pred eccCCccEEEEEcCc-chhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCE
Q psy13615 6 RMVQRKRVAVLISGT-GTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPT 65 (263)
Q Consensus 6 ~m~~~~riavl~SG~-Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~ 65 (263)
.||.++||+|+.+|+ |+.+...+. +. +.++.+ +.|+......+.++++|+..
T Consensus 19 ~~m~mmkI~IIG~G~mG~~la~~l~----~~---g~~V~~-v~~r~~~~~~~l~~~~g~~~ 71 (220)
T 4huj_A 19 YFQSMTTYAIIGAGAIGSALAERFT----AA---QIPAII-ANSRGPASLSSVTDRFGASV 71 (220)
T ss_dssp TGGGSCCEEEEECHHHHHHHHHHHH----HT---TCCEEE-ECTTCGGGGHHHHHHHTTTE
T ss_pred hhhcCCEEEEECCCHHHHHHHHHHH----hC---CCEEEE-EECCCHHHHHHHHHHhCCCc
Confidence 456678999999998 776655542 11 235543 35553344444566777654
No 121
>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}
Probab=52.30 E-value=13 Score=32.87 Aligned_cols=61 Identities=11% Similarity=0.053 Sum_probs=31.7
Q ss_pred cCCccEEEEEcCc-chhHHHHHHHhccccCC-CCceEEEEEecCCCChhhHHHHHcCCCEEEee
Q psy13615 8 VQRKRVAVLISGT-GTNLKSLLEATSNRSDI-MRAEIVLVVSNKHNVEGLNIARNAGIPTKVST 69 (263)
Q Consensus 8 ~~~~riavl~SG~-Gsnl~al~~~~~~~~~~-l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~ 69 (263)
|.|.||+|+..|. |..-...+.+...-... -..++++|+.-++ ..+-+.|+++|+|..+-+
T Consensus 23 MkkirvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~-~~a~~~a~~~g~~~~y~d 85 (393)
T 4fb5_A 23 MKPLGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANA-GLAEARAGEFGFEKATAD 85 (393)
T ss_dssp -CCCEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC---TTHHHHHHHHTCSEEESC
T ss_pred CCCccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCH-HHHHHHHHHhCCCeecCC
Confidence 3456789988886 53211111000000011 1368888776554 445678899999865543
No 122
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}
Probab=50.82 E-value=24 Score=32.68 Aligned_cols=57 Identities=16% Similarity=0.173 Sum_probs=37.0
Q ss_pred ccCCccEEEEEcCc--chhHHHHHHHhccccCCCCceEEEEEecCCC----ChhhHHHHHcCCC-EEEeeC
Q psy13615 7 MVQRKRVAVLISGT--GTNLKSLLEATSNRSDIMRAEIVLVVSNKHN----VEGLNIARNAGIP-TKVSTY 70 (263)
Q Consensus 7 m~~~~riavl~SG~--Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~----a~gl~~A~~~gIP-~~~v~~ 70 (263)
|..+.|+++..||. .|-+..++. +. +.+|.++..|... ..+.+.|+++|+| .++++.
T Consensus 2 ~~~~~kVvvalSGGlDSsvll~lL~----e~---G~eV~av~vd~g~~~e~e~a~~~A~~lGi~~~~vvd~ 65 (413)
T 2nz2_A 2 MSSKGSVVLAYSGGLDTSCILVWLK----EQ---GYDVIAYLANIGQKEDFEEARKKALKLGAKKVFIEDV 65 (413)
T ss_dssp ---CEEEEEECCSSHHHHHHHHHHH----HT---TEEEEEEEEESSCCCCHHHHHHHHHHHTCSEEEEEEC
T ss_pred CCCCCeEEEEEcChHHHHHHHHHHH----Hc---CCEEEEEEEECCcHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 55567999999998 343444441 21 4688888888543 3557789999999 777653
No 123
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=50.47 E-value=13 Score=32.79 Aligned_cols=55 Identities=9% Similarity=0.250 Sum_probs=34.3
Q ss_pred ccCCccEEEEEcCc-chh-HHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEe
Q psy13615 7 MVQRKRVAVLISGT-GTN-LKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVS 68 (263)
Q Consensus 7 m~~~~riavl~SG~-Gsn-l~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v 68 (263)
+.+|.|++|+..|. |.+ +...+.. .. .+++++|++-+ ...+-+.|+++|+|..+-
T Consensus 20 ~~~mirigiIG~G~ig~~~~~~~~~~----~~--~~~lvav~d~~-~~~a~~~a~~~g~~~~y~ 76 (350)
T 4had_A 20 FQSMLRFGIISTAKIGRDNVVPAIQD----AE--NCVVTAIASRD-LTRAREMADRFSVPHAFG 76 (350)
T ss_dssp --CCEEEEEESCCHHHHHTHHHHHHH----CS--SEEEEEEECSS-HHHHHHHHHHHTCSEEES
T ss_pred ccCccEEEEEcChHHHHHHHHHHHHh----CC--CeEEEEEECCC-HHHHHHHHHHcCCCeeeC
Confidence 34567999999987 643 2333321 12 36888876544 345677889999986543
No 124
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}
Probab=50.29 E-value=27 Score=31.08 Aligned_cols=50 Identities=14% Similarity=0.110 Sum_probs=31.1
Q ss_pred CccEEEEEcCc-chhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCE
Q psy13615 10 RKRVAVLISGT-GTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPT 65 (263)
Q Consensus 10 ~~riavl~SG~-Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~ 65 (263)
+.||+++..|. |......+.. +.. ..++++|+.-+ ...+-+.|+++|++.
T Consensus 23 ~~rvgiIG~G~~g~~~~~~l~~---~~~--~~~lvav~d~~-~~~~~~~a~~~g~~~ 73 (357)
T 3ec7_A 23 TLKAGIVGIGMIGSDHLRRLAN---TVS--GVEVVAVCDIV-AGRAQAALDKYAIEA 73 (357)
T ss_dssp CEEEEEECCSHHHHHHHHHHHH---TCT--TEEEEEEECSS-TTHHHHHHHHHTCCC
T ss_pred eeeEEEECCcHHHHHHHHHHHh---hCC--CcEEEEEEeCC-HHHHHHHHHHhCCCC
Confidence 67899999987 6544333311 112 36787766544 345566788999743
No 125
>1u2p_A Ptpase, low molecular weight protein-tyrosine- phosphatase; hydrolase; 1.90A {Mycobacterium tuberculosis} PDB: 1u2q_A
Probab=50.15 E-value=14 Score=29.41 Aligned_cols=60 Identities=13% Similarity=0.189 Sum_probs=34.9
Q ss_pred ccCCccEEEEEcCc---chhHHHHHHHhccccC---CCCceEEEEEe----cCCCChhhHHHHHcCCCEE
Q psy13615 7 MVQRKRVAVLISGT---GTNLKSLLEATSNRSD---IMRAEIVLVVS----NKHNVEGLNIARNAGIPTK 66 (263)
Q Consensus 7 m~~~~riavl~SG~---Gsnl~al~~~~~~~~~---~l~~~iv~Vis----n~~~a~gl~~A~~~gIP~~ 66 (263)
|..++||.|+.+|+ ..-.++++.+...+.+ .+.++=+.+-. +.++-.+++.++++||+..
T Consensus 1 m~~~~~VLFVC~gN~cRSpmAEal~~~~~~~~gl~~~~~v~SAGt~~~~~G~~~~p~a~~~l~~~Gid~s 70 (163)
T 1u2p_A 1 MSDPLHVTFVCTGNICRSPMAEKMFAQQLRHRGLGDAVRVTSAGTGNWHVGSCADERAAGVLRAHGYPTD 70 (163)
T ss_dssp ---CEEEEEEESSSSSHHHHHHHHHHHHHHHTTCTTTEEEEEEESSCTTTTCCCCHHHHHHHHHTTCCCC
T ss_pred CCCCCEEEEEcCCcHhHHHHHHHHHHHHHHHCCCCCcEEEEecccCCCcCCCCCCHHHHHHHHHcCcCCC
Confidence 66778999999998 4555666644321211 12222233332 2466678899999999965
No 126
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=49.46 E-value=33 Score=30.12 Aligned_cols=62 Identities=16% Similarity=0.183 Sum_probs=40.1
Q ss_pred eccC-CccEEEEEcCc--chhHHHHHHHhccccCCCCce-EEEEEecCCCC--------hhhHHHHHcCCCEEEeeC
Q psy13615 6 RMVQ-RKRVAVLISGT--GTNLKSLLEATSNRSDIMRAE-IVLVVSNKHNV--------EGLNIARNAGIPTKVSTY 70 (263)
Q Consensus 6 ~m~~-~~riavl~SG~--Gsnl~al~~~~~~~~~~l~~~-iv~Visn~~~a--------~gl~~A~~~gIP~~~v~~ 70 (263)
+|.. ..|+++..||. .+.+..++.. .. ..++.+ +.++..|+..- .+.+.|+++|||.++++.
T Consensus 19 ~l~~~~~~vlva~SGG~DS~~Ll~ll~~--~~-~~~g~~~v~av~vd~g~r~~s~~~~~~v~~~a~~lgi~~~v~~~ 92 (317)
T 1wy5_A 19 KIFSGERRVLIAFSGGVDSVVLTDVLLK--LK-NYFSLKEVALAHFNHMLRESAERDEEFCKEFAKERNMKIFVGKE 92 (317)
T ss_dssp CSCSSCCEEEEECCSSHHHHHHHHHHHH--ST-TTTTCSEEEEEEEECCSSTHHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred CCCCCCCEEEEEecchHHHHHHHHHHHH--HH-HHcCCCEEEEEEEECCCCcccHHHHHHHHHHHHHcCCcEEEEEE
Confidence 3443 35799999998 4444445422 11 234567 88888885431 356778999999998874
No 127
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}
Probab=47.13 E-value=15 Score=32.86 Aligned_cols=51 Identities=12% Similarity=-0.008 Sum_probs=28.4
Q ss_pred ccCCccEEEEEcCcchh--HHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCE
Q psy13615 7 MVQRKRVAVLISGTGTN--LKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPT 65 (263)
Q Consensus 7 m~~~~riavl~SG~Gsn--l~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~ 65 (263)
||.+.||+++..|.... +...+. . . ..++++|+.-++ ..+.+.|+++|++.
T Consensus 23 Mm~~irvgiiG~G~~~~~~~~~~~~----~-~--~~~lvav~d~~~-~~a~~~a~~~~~~~ 75 (361)
T 3u3x_A 23 MMDELRFAAVGLNHNHIYGQVNCLL----R-A--GARLAGFHEKDD-ALAAEFSAVYADAR 75 (361)
T ss_dssp ---CCEEEEECCCSTTHHHHHHHHH----H-T--TCEEEEEECSCH-HHHHHHHHHSSSCC
T ss_pred hccCcEEEEECcCHHHHHHHHHHhh----c-C--CcEEEEEEcCCH-HHHHHHHHHcCCCc
Confidence 88899999999997542 222221 1 1 367777766443 33455667776543
No 128
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=45.35 E-value=28 Score=30.94 Aligned_cols=55 Identities=15% Similarity=0.260 Sum_probs=31.6
Q ss_pred ccEEEEEcCc-chhHHHH--HHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCC
Q psy13615 11 KRVAVLISGT-GTNLKSL--LEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYK 71 (263)
Q Consensus 11 ~riavl~SG~-Gsnl~al--~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~ 71 (263)
+||.+.+.|+ |+-+.++ .++.. +. +.+|..+.+.+. . -.+...+.|+|+..++..
T Consensus 3 ~~i~i~~GGTgGHi~palala~~L~-~~---g~~V~~vg~~~g-~-e~~~v~~~g~~~~~i~~~ 60 (365)
T 3s2u_A 3 GNVLIMAGGTGGHVFPALACAREFQ-AR---GYAVHWLGTPRG-I-ENDLVPKAGLPLHLIQVS 60 (365)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHH-HT---TCEEEEEECSSS-T-HHHHTGGGTCCEEECC--
T ss_pred CcEEEEcCCCHHHHHHHHHHHHHHH-hC---CCEEEEEECCch-H-hhchhhhcCCcEEEEECC
Confidence 4788777777 6665444 33322 21 468876665431 1 123456789998887644
No 129
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*
Probab=44.70 E-value=16 Score=32.51 Aligned_cols=51 Identities=16% Similarity=0.104 Sum_probs=29.1
Q ss_pred cCCccEEEEEcCc-ch-h-HHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEE
Q psy13615 8 VQRKRVAVLISGT-GT-N-LKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTK 66 (263)
Q Consensus 8 ~~~~riavl~SG~-Gs-n-l~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~ 66 (263)
|.+.||+|+..|. |. . +.++. +.. ..++++|.+.+ ...+.+.|+++|+|.+
T Consensus 25 m~~~rigiIG~G~~g~~~~~~~l~-----~~~--~~~l~av~d~~-~~~~~~~a~~~g~~~~ 78 (350)
T 3rc1_A 25 ANPIRVGVIGCADIAWRRALPALE-----AEP--LTEVTAIASRR-WDRAKRFTERFGGEPV 78 (350)
T ss_dssp -CCEEEEEESCCHHHHHTHHHHHH-----HCT--TEEEEEEEESS-HHHHHHHHHHHCSEEE
T ss_pred CCceEEEEEcCcHHHHHHHHHHHH-----hCC--CeEEEEEEcCC-HHHHHHHHHHcCCCCc
Confidence 4466899998887 54 2 33333 111 35777665543 2344556677777754
No 130
>2cwd_A Low molecular weight phosphotyrosine protein PHOS; tyrosine phosphatase, structural genomics; 1.90A {Thermus thermophilus}
Probab=42.83 E-value=21 Score=28.40 Aligned_cols=60 Identities=8% Similarity=0.057 Sum_probs=36.0
Q ss_pred ccCCccEEEEEcCc---chhHHHHHHHhccccC---CCCceEEEEEe----cCCCChhhHHHHHcCCCEE
Q psy13615 7 MVQRKRVAVLISGT---GTNLKSLLEATSNRSD---IMRAEIVLVVS----NKHNVEGLNIARNAGIPTK 66 (263)
Q Consensus 7 m~~~~riavl~SG~---Gsnl~al~~~~~~~~~---~l~~~iv~Vis----n~~~a~gl~~A~~~gIP~~ 66 (263)
|..++||.|+.+|+ ..-.++++.+...+.+ .+..+=+.+-. +.++-.+++.++++||+..
T Consensus 1 ~~~~~~VLFVC~gN~cRSpmAEal~~~~~~~~gl~~~~~v~SAGt~~~~~g~~~~p~a~~~l~e~Gid~s 70 (161)
T 2cwd_A 1 MDRPVRVLFVCLGNICRSPMAEGIFRKLLKERGLEDRFEVDSAGTGAWHVGEPMDPRARRVLEEEGAYFP 70 (161)
T ss_dssp -CCCEEEEEEESSSSSHHHHHHHHHHHHHHHHTCTTTEEEEEEESSCTTTTCCCCHHHHHHHHHHTCCCC
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHHHHHHcCCCCcEEEEecccCCCccCCCCCHHHHHHHHHcCcCcc
Confidence 44567999999998 4555666644321111 22223333333 3556678899999999975
No 131
>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}
Probab=42.34 E-value=14 Score=32.55 Aligned_cols=60 Identities=10% Similarity=0.043 Sum_probs=31.1
Q ss_pred ccCCccEEEEEcCc-chhH-HHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEe
Q psy13615 7 MVQRKRVAVLISGT-GTNL-KSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVS 68 (263)
Q Consensus 7 m~~~~riavl~SG~-Gsnl-~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v 68 (263)
|. +.||+++..|. |... .++...-....-...+++++|+.-++ ..+-+.|+++|+|..+-
T Consensus 4 M~-klrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~-~~a~~~a~~~g~~~~~~ 65 (390)
T 4h3v_A 4 MT-NLGIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDA-EAVRAAAGKLGWSTTET 65 (390)
T ss_dssp CC-EEEEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSH-HHHHHHHHHHTCSEEES
T ss_pred CC-cCcEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCH-HHHHHHHHHcCCCcccC
Confidence 44 57899998876 5432 22221100000111347777655442 34456678888876553
No 132
>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5
Probab=42.09 E-value=33 Score=29.67 Aligned_cols=50 Identities=18% Similarity=0.216 Sum_probs=26.6
Q ss_pred cCCccEEEEEcCc-chh-HHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCC
Q psy13615 8 VQRKRVAVLISGT-GTN-LKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIP 64 (263)
Q Consensus 8 ~~~~riavl~SG~-Gsn-l~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP 64 (263)
|.+.||+++..|. |.. +...+. +.. ..++++++..++ ..+-+.|+++|+|
T Consensus 3 m~~~~vgiiG~G~~g~~~~~~~l~----~~~--~~~lvav~d~~~-~~~~~~~~~~g~~ 54 (319)
T 1tlt_A 3 LKKLRIGVVGLGGIAQKAWLPVLA----AAS--DWTLQGAWSPTR-AKALPICESWRIP 54 (319)
T ss_dssp --CEEEEEECCSTHHHHTHHHHHH----SCS--SEEEEEEECSSC-TTHHHHHHHHTCC
T ss_pred CCcceEEEECCCHHHHHHHHHHHH----hCC--CeEEEEEECCCH-HHHHHHHHHcCCC
Confidence 4467899998887 553 322221 111 356766655443 3334556667766
No 133
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=41.54 E-value=47 Score=27.37 Aligned_cols=54 Identities=17% Similarity=0.152 Sum_probs=34.5
Q ss_pred ccEEEEEcCc--chhHHHHHHHhccccCCCCceEEEEEecCCCC------hhhHHHHHcCCC-EEEeeCC
Q psy13615 11 KRVAVLISGT--GTNLKSLLEATSNRSDIMRAEIVLVVSNKHNV------EGLNIARNAGIP-TKVSTYK 71 (263)
Q Consensus 11 ~riavl~SG~--Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a------~gl~~A~~~gIP-~~~v~~~ 71 (263)
.|++++.||. .+-+..++. +.+ .++.++..|.... .+.+.|+++||| ..+++..
T Consensus 3 ~kvvv~lSGG~DS~~~l~ll~----~~~---~~v~av~~~~g~~~~~e~~~a~~~a~~lgi~~~~vi~~~ 65 (232)
T 2pg3_A 3 KRAVVVFSGGQDSTTCLIQAL----QDY---DDVHCITFDYGQRHRAEIEVAQELSQKLGAAAHKVLDVG 65 (232)
T ss_dssp CEEEEECCSSHHHHHHHHHHH----HHC---SEEEEEEEESSSSCHHHHHHHHHHHHHHTCSEEEEEECT
T ss_pred CCEEEEecCcHHHHHHHHHHH----HcC---CCEEEEEEECCCCCHHHHHHHHHHHHHhCCCceEEEeCh
Confidence 5899999998 333333331 112 4777777774432 345678899999 8887643
No 134
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=40.11 E-value=61 Score=29.87 Aligned_cols=59 Identities=17% Similarity=0.132 Sum_probs=39.6
Q ss_pred CccEEEEEcCc--chhHHHHHHHhccccCC-CCceEEEEEecCCCC--------hhhHHHHHcCCCEEEeeCC
Q psy13615 10 RKRVAVLISGT--GTNLKSLLEATSNRSDI-MRAEIVLVVSNKHNV--------EGLNIARNAGIPTKVSTYK 71 (263)
Q Consensus 10 ~~riavl~SG~--Gsnl~al~~~~~~~~~~-l~~~iv~Visn~~~a--------~gl~~A~~~gIP~~~v~~~ 71 (263)
..|++|.+||. .+.|..++... . .. .+.++.++..|+..- .+.+.|+++|||+++++..
T Consensus 13 ~~~vlVa~SGG~DS~~Ll~ll~~~--~-~~~~g~~v~avhvdhglr~~s~~~~~~v~~~~~~lgi~~~v~~~~ 82 (433)
T 1ni5_A 13 SRQILVAFSGGLDSTVLLHQLVQW--R-TENPGVALRAIHVHHGLSANADAWVTHCENVCQQWQVPLVVERVQ 82 (433)
T ss_dssp CSEEEEECCSBHHHHHHHHHHHHH--H-TTSTTCEEEEEEECCSCCSSHHHHHHHHHHHHHHTTCCEEEECCC
T ss_pred CCEEEEEEcchHHHHHHHHHHHHH--H-HhcCCCeEEEEEEECCCCcccHHHHHHHHHHHHHcCCcEEEEEec
Confidence 45799999998 44455555221 1 12 357898999985421 3467899999999988643
No 135
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=39.66 E-value=21 Score=32.58 Aligned_cols=58 Identities=17% Similarity=0.246 Sum_probs=36.7
Q ss_pred ccC-CccEEEEEcCc-ch-hHHHHHHHhccccCCCCceEEEEEecCCC--------------ChhhHHHHHcCCCEEEee
Q psy13615 7 MVQ-RKRVAVLISGT-GT-NLKSLLEATSNRSDIMRAEIVLVVSNKHN--------------VEGLNIARNAGIPTKVST 69 (263)
Q Consensus 7 m~~-~~riavl~SG~-Gs-nl~al~~~~~~~~~~l~~~iv~Visn~~~--------------a~gl~~A~~~gIP~~~v~ 69 (263)
|.. ..|+++..||. -| -+..++. +. +.+|.++..|.-. ..+.+.|+++|||..+++
T Consensus 13 ~~~~~~kVvVa~SGGvDSsv~a~lL~----~~---G~~V~~v~~~~~~~~~~~~~~~s~~d~~~a~~va~~LGIp~~vvd 85 (380)
T 2der_A 13 MSETAKKVIVGMSGGVDSSVSAWLLQ----QQ---GYQVEGLFMKNWEEDDGEEYCTAAADLADAQAVCDKLGIELHTVN 85 (380)
T ss_dssp ----CCEEEEECCSCSTTHHHHHHHH----TT---CCEEEEEEEECCCCCSHHHHHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCCCCCEEEEEEEChHHHHHHHHHHH----Hc---CCeEEEEEEEcCccccccCCCCCHHHHHHHHHHHHHcCCcEEEEe
Confidence 444 34899999998 34 3333441 22 4688888886321 134567899999999998
Q ss_pred CC
Q psy13615 70 YK 71 (263)
Q Consensus 70 ~~ 71 (263)
..
T Consensus 86 ~~ 87 (380)
T 2der_A 86 FA 87 (380)
T ss_dssp CH
T ss_pred Cc
Confidence 54
No 136
>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}
Probab=39.59 E-value=16 Score=32.52 Aligned_cols=49 Identities=16% Similarity=0.209 Sum_probs=24.5
Q ss_pred cCCccEEEEEcCc-chhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCC
Q psy13615 8 VQRKRVAVLISGT-GTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIP 64 (263)
Q Consensus 8 ~~~~riavl~SG~-Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP 64 (263)
|.+.||+++..|. |......+. +.. ..++++|+.-+++ -++.|+++|++
T Consensus 3 m~~~~vgiiG~G~~g~~~~~~l~----~~~--~~~l~av~d~~~~--~~~~a~~~g~~ 52 (359)
T 3e18_A 3 LKKYQLVIVGYGGMGSYHVTLAS----AAD--NLEVHGVFDILAE--KREAAAQKGLK 52 (359)
T ss_dssp CCCEEEEEECCSHHHHHHHHHHH----TST--TEEEEEEECSSHH--HHHHHHTTTCC
T ss_pred CCcCcEEEECcCHHHHHHHHHHH----hCC--CcEEEEEEcCCHH--HHHHHHhcCCc
Confidence 4567899988887 543333331 111 3566665543322 12344555554
No 137
>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}
Probab=39.10 E-value=20 Score=31.43 Aligned_cols=49 Identities=16% Similarity=0.210 Sum_probs=26.4
Q ss_pred CCccEEEEEcCc-chhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCC
Q psy13615 9 QRKRVAVLISGT-GTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIP 64 (263)
Q Consensus 9 ~~~riavl~SG~-Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP 64 (263)
.+.||+++..|. |..+...+.+ .+ ..++++|.+.++ ..+.+.|+++|+|
T Consensus 4 ~~~rigiiG~G~ig~~~~~~l~~----~~--~~~~~av~d~~~-~~~~~~a~~~~~~ 53 (329)
T 3evn_A 4 SKVRYGVVSTAKVAPRFIEGVRL----AG--NGEVVAVSSRTL-ESAQAFANKYHLP 53 (329)
T ss_dssp -CEEEEEEBCCTTHHHHHHHHHH----HC--SEEEEEEECSCS-STTCC---CCCCS
T ss_pred CceEEEEEechHHHHHHHHHHHh----CC--CcEEEEEEcCCH-HHHHHHHHHcCCC
Confidence 567999999997 6544333321 12 356777655443 3334556677776
No 138
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1
Probab=38.72 E-value=48 Score=30.88 Aligned_cols=55 Identities=18% Similarity=0.204 Sum_probs=38.3
Q ss_pred CccEEEEEcCc--chhHHHHHHHhccccCCCCceEEEEEecCCC----ChhhHHHHHcCC-CEEEeeCC
Q psy13615 10 RKRVAVLISGT--GTNLKSLLEATSNRSDIMRAEIVLVVSNKHN----VEGLNIARNAGI-PTKVSTYK 71 (263)
Q Consensus 10 ~~riavl~SG~--Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~----a~gl~~A~~~gI-P~~~v~~~ 71 (263)
+.|+++..||. -|-+..++. +. +.+|+++..|-.. ..+-+.|+++|| |..++|..
T Consensus 14 ~~KVVVA~SGGlDSSv~a~~Lk----e~---G~eViavt~d~Gq~~Ele~A~~vA~~lGi~~~~VvDl~ 75 (421)
T 1vl2_A 14 KEKVVLAYSGGLDTSVILKWLC----EK---GFDVIAYVANVGQKDDFVAIKEKALKTGASKVYVEDLR 75 (421)
T ss_dssp CCEEEEECCSSHHHHHHHHHHH----HT---TCEEEEEEEESSCCCCHHHHHHHHHHHTCSEEEEEECH
T ss_pred cCCEEEEeCCcHHHHHHHHHHH----HC---CCeEEEEEEEcCCHHHHHHHHHHHHHcCCceEEEEecH
Confidence 45899999998 343444441 21 4689888888432 256778999999 89998864
No 139
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}
Probab=38.56 E-value=34 Score=31.10 Aligned_cols=55 Identities=20% Similarity=0.347 Sum_probs=37.0
Q ss_pred CccEEEEEcCc--chhHHHHHHHhccccCCCCceEEEEEecCCC-------C-------hhhHHHHHcCCCEEEeeCC
Q psy13615 10 RKRVAVLISGT--GTNLKSLLEATSNRSDIMRAEIVLVVSNKHN-------V-------EGLNIARNAGIPTKVSTYK 71 (263)
Q Consensus 10 ~~riavl~SG~--Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~-------a-------~gl~~A~~~gIP~~~v~~~ 71 (263)
.+|+++..||. .|-+..++. +. +.+|.++..+... | .+.+.|+++|||..+++..
T Consensus 9 ~~kVlVa~SGGvDSsv~a~lL~----~~---G~~V~~v~~~~~~~~~~~~~c~~~~d~~~a~~va~~lGIp~~vv~~~ 79 (376)
T 2hma_A 9 KTRVVVGMSGGVDSSVTALLLK----EQ---GYDVIGIFMKNWDDTDENGVCTATEDYKDVVAVADQIGIPYYSVNFE 79 (376)
T ss_dssp GSEEEEECCSSHHHHHHHHHHH----HT---TCEEEEEEEECCCCCC----CHHHHHHHHHHHHHHHHTCCEEEEECH
T ss_pred CCeEEEEEeCHHHHHHHHHHHH----Hc---CCcEEEEEEECCCcccccccCCCHHHHHHHHHHHHHhCCcEEEEeCh
Confidence 45899999998 333333441 22 4688888877431 2 3456789999999999853
No 140
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=38.32 E-value=45 Score=28.09 Aligned_cols=34 Identities=24% Similarity=0.194 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCC
Q psy13615 212 TILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEE 260 (263)
Q Consensus 212 ~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~ 260 (263)
++...+.+.|...|+.|.|+=+. |..++|+|+|+
T Consensus 253 ~~a~~~~~~l~~~g~~~~~vD~~---------------g~~~iEvN~r~ 286 (316)
T 1gsa_A 253 KIARQIGPTLKEKGLIFVGLDII---------------GDRLTEINVTS 286 (316)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEE---------------TTEEEEEECSS
T ss_pred HHHHHHHHHHHhCCCcEEEEEec---------------CCEEEEEcCCC
Confidence 44455666776678877775433 23578999984
No 141
>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X
Probab=38.32 E-value=30 Score=30.23 Aligned_cols=52 Identities=15% Similarity=0.254 Sum_probs=29.8
Q ss_pred CccEEEEEcCc-chhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEE
Q psy13615 10 RKRVAVLISGT-GTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTK 66 (263)
Q Consensus 10 ~~riavl~SG~-Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~ 66 (263)
+.|++++..|. |..+...+. +......++++|.+.+ ...+.+.|+++|+|..
T Consensus 2 ~~rigiiG~G~ig~~~~~~l~----~~~~~~~~l~av~d~~-~~~a~~~a~~~~~~~~ 54 (334)
T 3ohs_X 2 ALRWGIVSVGLISSDFTAVLQ----TLPRSEHQVVAVAARD-LSRAKEFAQKHDIPKA 54 (334)
T ss_dssp CEEEEEECCSHHHHHHHHHHT----TSCTTTEEEEEEECSS-HHHHHHHHHHHTCSCE
T ss_pred ccEEEEECchHHHHHHHHHHH----hCCCCCeEEEEEEcCC-HHHHHHHHHHcCCCcc
Confidence 35899998887 655433331 1111235777765543 3345567777888743
No 142
>1jl3_A Arsenate reductase; alpha-beta fold, PTP-loop, oxidoreductase; 1.60A {Bacillus subtilis} SCOP: c.44.1.1 PDB: 1z2d_A 1z2e_A 2ipa_B
Probab=38.26 E-value=31 Score=26.49 Aligned_cols=54 Identities=13% Similarity=0.130 Sum_probs=33.3
Q ss_pred CccEEEEEcCc---chhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCE
Q psy13615 10 RKRVAVLISGT---GTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPT 65 (263)
Q Consensus 10 ~~riavl~SG~---Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~ 65 (263)
++||.|+.+|+ ..-.++++.+.. .+.+.++=+++-...++-.+++.++++||++
T Consensus 3 ~~~VLFVC~gN~cRSpmAEai~~~~~--~~~~~v~SAGt~~~~~~p~a~~~l~~~Gid~ 59 (139)
T 1jl3_A 3 NKIIYFLCTGNSCRSQMAEGWAKQYL--GDEWKVYSAGIEAHGLNPNAVKAMKEVGIDI 59 (139)
T ss_dssp CEEEEEEESSSSSHHHHHHHHHHHHS--CTTEEEEEEESSCCCCCHHHHHHHHHTTCCC
T ss_pred CCeEEEEcCCchHHHHHHHHHHHHhC--CCCEEEEcCcCCCCCCCHHHHHHHHHcCCCc
Confidence 45899999998 555566665422 1222233333333345667788899999985
No 143
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=38.02 E-value=21 Score=31.10 Aligned_cols=34 Identities=12% Similarity=0.164 Sum_probs=28.9
Q ss_pred CceEEEEEecCCCChhhHHHHH----cCCCEEEeeCCC
Q psy13615 39 RAEIVLVVSNKHNVEGLNIARN----AGIPTKVSTYKH 72 (263)
Q Consensus 39 ~~~iv~Visn~~~a~gl~~A~~----~gIP~~~v~~~~ 72 (263)
..|.+.++|=++.++|=..||+ .|||+.+++...
T Consensus 64 ~pDfvI~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~p 101 (283)
T 1qv9_A 64 EPDFIVYGGPNPAAPGPSKAREMLADSEYPAVIIGDAP 101 (283)
T ss_dssp CCSEEEEECSCTTSHHHHHHHHHHHTSSSCEEEEEEGG
T ss_pred CCCEEEEECCCCCCCCchHHHHHHHhCCCCEEEEcCCc
Confidence 4689999999999999888876 799999997654
No 144
>1q0q_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; oxidoreductase; HET: DXP NDP; 1.90A {Escherichia coli} SCOP: a.69.3.1 c.2.1.3 d.81.1.3 PDB: 1q0l_A* 1q0h_A* 3r0i_A* 1k5h_A 1onn_A 1ono_A 1onp_A* 1jvs_A* 1t1r_A* 1t1s_A* 2egh_A* 3anm_A* 3anl_A* 3ann_A* 3iie_A
Probab=37.46 E-value=42 Score=31.18 Aligned_cols=56 Identities=14% Similarity=0.132 Sum_probs=41.7
Q ss_pred CCccEEEEEcCc--chhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEee
Q psy13615 9 QRKRVAVLISGT--GTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVST 69 (263)
Q Consensus 9 ~~~riavl~SG~--Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~ 69 (263)
-|++|++|.|.. |++...++++ ..+ .++|+++..++.-..-.+.|++++-.+..+.
T Consensus 8 ~~k~i~ILGSTGSIGtqtLdVi~~---~pd--~f~V~aL~ag~nv~~L~~q~~~f~p~~v~v~ 65 (406)
T 1q0q_A 8 GMKQLTILGSTGSIGCSTLDVVRH---NPE--HFRVVALVAGKNVTRMVEQCLEFSPRYAVMD 65 (406)
T ss_dssp -CEEEEEETTTSHHHHHHHHHHHH---CTT--TEEEEEEEESSCHHHHHHHHHHHCCSEEEES
T ss_pred CceeEEEEccCcHHHHHHHHHHHh---CCC--ccEEEEEEcCCCHHHHHHHHHHhCCCEEEEc
Confidence 367999999977 8888877743 212 3799999998755566888999997766664
No 145
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=36.70 E-value=1.1e+02 Score=23.24 Aligned_cols=71 Identities=10% Similarity=-0.011 Sum_probs=47.6
Q ss_pred CccEEEEEcCc-----chhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCHHHHHHHHH
Q psy13615 10 RKRVAVLISGT-----GTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLILSNSLQVMQ 84 (263)
Q Consensus 10 ~~riavl~SG~-----Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~~~~~~i~~ 84 (263)
+.|+.+...+. |-|+-+.+ .. . .++++.-+-.|.+....++.|++.+..+..++..........+++++
T Consensus 3 ~~~vvla~~~~d~HdiG~~~v~~~--l~-~---~G~~Vi~lG~~~p~e~~v~~a~~~~~d~v~lS~~~~~~~~~~~~~i~ 76 (137)
T 1ccw_A 3 KKTIVLGVIGSDCHAVGNKILDHA--FT-N---AGFNVVNIGVLSPQELFIKAAIETKADAILVSSLYGQGEIDCKGLRQ 76 (137)
T ss_dssp CCEEEEEEETTCCCCHHHHHHHHH--HH-H---TTCEEEEEEEEECHHHHHHHHHHHTCSEEEEEECSSTHHHHHTTHHH
T ss_pred CCEEEEEeCCCchhHHHHHHHHHH--HH-H---CCCEEEECCCCCCHHHHHHHHHhcCCCEEEEEecCcCcHHHHHHHHH
Confidence 44666554444 66555544 22 1 15788877788777788899999999999988665333466666777
Q ss_pred Hh
Q psy13615 85 KV 86 (263)
Q Consensus 85 ~l 86 (263)
.+
T Consensus 77 ~l 78 (137)
T 1ccw_A 77 KC 78 (137)
T ss_dssp HH
T ss_pred HH
Confidence 66
No 146
>3n07_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; structural genomics, phosphatase, PSI-2, protein structure initiative; HET: MSE; 1.76A {Vibrio cholerae}
Probab=36.28 E-value=57 Score=26.33 Aligned_cols=44 Identities=11% Similarity=0.097 Sum_probs=30.7
Q ss_pred EEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCHHHHHHHHHHhc
Q psy13615 42 IVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLILSNSLQVMQKVG 87 (263)
Q Consensus 42 iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~~~~~~i~~~l~ 87 (263)
-++|+||++......+++++||+.++...+ ++.+..+.+++.++
T Consensus 70 ~~~ivT~~~~~~~~~~l~~lgi~~~~~~~k--~k~~~~~~~~~~~~ 113 (195)
T 3n07_A 70 EIAIITGRRSQIVENRMKALGISLIYQGQD--DKVQAYYDICQKLA 113 (195)
T ss_dssp EEEEECSSCCHHHHHHHHHTTCCEEECSCS--SHHHHHHHHHHHHC
T ss_pred EEEEEECcCHHHHHHHHHHcCCcEEeeCCC--CcHHHHHHHHHHhC
Confidence 356889988888888999999997664432 23356666666664
No 147
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=35.59 E-value=49 Score=30.81 Aligned_cols=63 Identities=13% Similarity=0.100 Sum_probs=41.0
Q ss_pred eccC-CccEEEEEcCc--chhHHHHHHHhccccCCCCceEEEEEecCCCC---------hhhHHHHHcCCCEEEeeCC
Q psy13615 6 RMVQ-RKRVAVLISGT--GTNLKSLLEATSNRSDIMRAEIVLVVSNKHNV---------EGLNIARNAGIPTKVSTYK 71 (263)
Q Consensus 6 ~m~~-~~riavl~SG~--Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a---------~gl~~A~~~gIP~~~v~~~ 71 (263)
+|.. ..|++|.+||. .+.|..++... . ...+.++.++-.|+..- .+.+.|+++|||.++++..
T Consensus 13 ~l~~~~~~vlVa~SGG~DS~~Ll~ll~~~--~-~~~~~~v~avhvdhglrg~~s~~~~~~v~~~~~~lgi~~~v~~~~ 87 (464)
T 3a2k_A 13 QLLSEGAAVIVGVSGGPDSLALLHVFLSL--R-DEWKLQVIAAHVDHMFRGRESEEEMEFVKRFCVERRILCETAQID 87 (464)
T ss_dssp CSSSCSSBEEEECCSSHHHHHHHHHHHHH--H-HTTTCBCEEEEEECTTCTHHHHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CCCCCCCEEEEEEcCcHHHHHHHHHHHHH--H-HHcCCeEEEEEEECCCCccccHHHHHHHHHHHHHcCCcEEEEEec
Confidence 4554 45799999998 44455554221 1 12346788888885432 4567799999999988653
No 148
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=34.95 E-value=76 Score=28.15 Aligned_cols=48 Identities=23% Similarity=0.284 Sum_probs=25.4
Q ss_pred eccCCccEEEEEcCcchhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHH
Q psy13615 6 RMVQRKRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIAR 59 (263)
Q Consensus 6 ~m~~~~riavl~SG~Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~ 59 (263)
-||.++||.|+.+|.- -..++.+. + +++.+++++-+.++++++...|.
T Consensus 3 ~m~~~~~ilI~g~g~~--~~~~~~a~--~--~~G~~~v~v~~~~~~~~~~~~ad 50 (403)
T 4dim_A 3 AMYDNKRLLILGAGRG--QLGLYKAA--K--ELGIHTIAGTMPNAHKPCLNLAD 50 (403)
T ss_dssp ---CCCEEEEECCCGG--GHHHHHHH--H--HHTCEEEEEECSSCCHHHHHHCS
T ss_pred cccCCCEEEEECCcHh--HHHHHHHH--H--HCCCEEEEEcCCCCCCcchhhCC
Confidence 4888889888777652 23344331 2 23567777733334667665543
No 149
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=34.85 E-value=1.3e+02 Score=22.00 Aligned_cols=51 Identities=20% Similarity=0.291 Sum_probs=29.7
Q ss_pred CccEEEEEcCc-chhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeC
Q psy13615 10 RKRVAVLISGT-GTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTY 70 (263)
Q Consensus 10 ~~riavl~SG~-Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~ 70 (263)
++++.|++.|. |+.+-..+. +. +.+++++ ++ +...++.+++.++++...+.
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~----~~---g~~V~~i--d~-~~~~~~~~~~~~~~~~~gd~ 57 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELT----AA---GKKVLAV--DK-SKEKIELLEDEGFDAVIADP 57 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHH----HT---TCCEEEE--ES-CHHHHHHHHHTTCEEEECCT
T ss_pred CCEEEEECCCHHHHHHHHHHH----HC---CCeEEEE--EC-CHHHHHHHHHCCCcEEECCC
Confidence 45788888877 765555442 11 3456543 22 23456677788877655543
No 150
>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A
Probab=34.48 E-value=31 Score=30.49 Aligned_cols=50 Identities=14% Similarity=0.106 Sum_probs=29.2
Q ss_pred ccCCccEEEEEcCc-chhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCC
Q psy13615 7 MVQRKRVAVLISGT-GTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGI 63 (263)
Q Consensus 7 m~~~~riavl~SG~-Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gI 63 (263)
|+.+.||+++..|. |..+...+. +.. ..++++|++.++ ..+.+.|+++|+
T Consensus 3 ~~~~~~vgiiG~G~ig~~~~~~l~----~~~--~~~lv~v~d~~~-~~~~~~a~~~~~ 53 (362)
T 1ydw_A 3 TETQIRIGVMGCADIARKVSRAIH----LAP--NATISGVASRSL-EKAKAFATANNY 53 (362)
T ss_dssp ---CEEEEEESCCTTHHHHHHHHH----HCT--TEEEEEEECSSH-HHHHHHHHHTTC
T ss_pred CCCceEEEEECchHHHHHHHHHHh----hCC--CcEEEEEEcCCH-HHHHHHHHHhCC
Confidence 67788999999987 654433331 112 367777665443 344566788886
No 151
>3n8i_A Low molecular weight phosphotyrosine protein PHOS; tyrosine phosphatase, hydrolase, protein-ligand complex; HET: NLA; 1.50A {Homo sapiens} SCOP: c.44.1.1 PDB: 5pnt_A* 1xww_A 1bvh_A 1dg9_A* 1phr_A 1pnt_A 1z12_A 1z13_A 1c0e_A 2p4u_A
Probab=34.33 E-value=38 Score=26.81 Aligned_cols=58 Identities=14% Similarity=0.220 Sum_probs=33.4
Q ss_pred ccCCccEEEEEcCc---chhHHHHHHHhccccCCCC--ceE--EEEEe----cCCCChhhHHHHHcCCCE
Q psy13615 7 MVQRKRVAVLISGT---GTNLKSLLEATSNRSDIMR--AEI--VLVVS----NKHNVEGLNIARNAGIPT 65 (263)
Q Consensus 7 m~~~~riavl~SG~---Gsnl~al~~~~~~~~~~l~--~~i--v~Vis----n~~~a~gl~~A~~~gIP~ 65 (263)
+|.++||.|+.+|+ ..-.++++.+...+.+ +. .++ +.+.. +.++-.+++.++++||+.
T Consensus 2 ~~~~~~vLFVC~gN~cRSpmAE~~~~~~~~~~g-l~~~~~v~SAGt~~~~~G~~~~~~a~~~l~~~Gid~ 70 (157)
T 3n8i_A 2 EQATKSVLFVCLGNICRSPIAEAVFRKLVTDQN-ISENWRVDSAATSGYEIGNPPDYRGQSCMKRHGIPM 70 (157)
T ss_dssp --CCEEEEEEESSSSSHHHHHHHHHHHHHHHTT-CGGGEEEEEEESSSTTTTCCCCHHHHHHHHHTTCCC
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHHHHHHcC-CCCcEEEEeeecCccccCCCCCHHHHHHHHHcCcCC
Confidence 35578999999998 4455556544222211 21 233 22222 234567789999999995
No 152
>2w6k_A COBE; biosynthetic protein, cobalamin, complete proteome, vitamin B12; 1.70A {Pseudomonas aeruginosa} SCOP: c.151.1.1 PDB: 2bsn_A 2w6l_A
Probab=34.29 E-value=62 Score=25.42 Aligned_cols=56 Identities=16% Similarity=0.116 Sum_probs=33.2
Q ss_pred EEEEcCcchhHHHHHHHhc---cccCCCCce--EEEEEecCCCChh-hHHHHHcCCCEEEee
Q psy13615 14 AVLISGTGTNLKSLLEATS---NRSDIMRAE--IVLVVSNKHNVEG-LNIARNAGIPTKVST 69 (263)
Q Consensus 14 avl~SG~Gsnl~al~~~~~---~~~~~l~~~--iv~Visn~~~a~g-l~~A~~~gIP~~~v~ 69 (263)
+-+..-+|+..+.|.+++. .+.+-.... ..+-+.-+.+-+| ++.|+++|+|..+++
T Consensus 14 vGIGcrrg~~~~~i~~ai~~aL~~~~l~~~~v~~latid~K~dE~gL~~~A~~lg~pl~~~~ 75 (145)
T 2w6k_A 14 AGIGCRRGCSAEHLRALLERTLGEHGRSLAELDALASIDGKRDEPGLRQLATLLERPVHFLA 75 (145)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHHHTTCCGGGCCEEEEECSSSCCHHHHHHHHHHTSCEEEEC
T ss_pred EEEeeCCCCCHHHHHHHHHHHHHHcCCCHHHcceEechHHhCCCHHHHHHHHHhCCCcEEeC
Confidence 3466667776655543321 112211223 4445555666666 789999999999986
No 153
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}
Probab=34.02 E-value=32 Score=30.11 Aligned_cols=49 Identities=18% Similarity=0.272 Sum_probs=28.7
Q ss_pred CCccEEEEEcCc-chhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCC
Q psy13615 9 QRKRVAVLISGT-GTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIP 64 (263)
Q Consensus 9 ~~~riavl~SG~-Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP 64 (263)
.+.||+++..|. |..+-..+.+ .. ..++++|...+ ...+.+.|+++|+|
T Consensus 4 ~~~~igiiG~G~~g~~~~~~l~~----~~--~~~l~av~d~~-~~~~~~~~~~~~~~ 53 (330)
T 3e9m_A 4 DKIRYGIMSTAQIVPRFVAGLRE----SA--QAEVRGIASRR-LENAQKMAKELAIP 53 (330)
T ss_dssp CCEEEEECSCCTTHHHHHHHHHH----SS--SEEEEEEBCSS-SHHHHHHHHHTTCC
T ss_pred CeEEEEEECchHHHHHHHHHHHh----CC--CcEEEEEEeCC-HHHHHHHHHHcCCC
Confidence 456899999887 6544433321 11 35676655433 33445567777776
No 154
>3e8m_A Acylneuraminate cytidylyltransferase; 2-keto-3-deoxynononic acid 9-phosphate phosphohydrolase, nucleotidyltransferase; HET: PEG PG4 EDO PGE; 1.10A {Bacteroides thetaiotaomicron} PDB: 3e84_A 3e81_A*
Probab=33.99 E-value=75 Score=23.97 Aligned_cols=44 Identities=11% Similarity=0.006 Sum_probs=30.9
Q ss_pred EEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCHHHHHHHHHHhc
Q psy13615 42 IVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLILSNSLQVMQKVG 87 (263)
Q Consensus 42 iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~~~~~~i~~~l~ 87 (263)
-++++||++.......++++|++.++...+ ++.+..+.+++.++
T Consensus 49 ~~~i~T~~~~~~~~~~~~~~gl~~~~~~~k--pk~~~~~~~~~~~~ 92 (164)
T 3e8m_A 49 PVGILTGEKTEIVRRRAEKLKVDYLFQGVV--DKLSAAEELCNELG 92 (164)
T ss_dssp CEEEECSSCCHHHHHHHHHTTCSEEECSCS--CHHHHHHHHHHHHT
T ss_pred EEEEEeCCChHHHHHHHHHcCCCEeecccC--ChHHHHHHHHHHcC
Confidence 356889998888888899999987665432 23366666666663
No 155
>2r8e_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; YRBI, divalent metal, HAD superfamily, KDO 8-P, hydrolase; 1.40A {Escherichia coli O6} PDB: 2r8x_A 2r8y_A 2r8z_A 3hyc_A 3i6b_A*
Probab=33.71 E-value=79 Score=24.83 Aligned_cols=44 Identities=11% Similarity=0.065 Sum_probs=30.5
Q ss_pred EEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCHHHHHHHHHHhc
Q psy13615 42 IVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLILSNSLQVMQKVG 87 (263)
Q Consensus 42 iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~~~~~~i~~~l~ 87 (263)
-++++||++.......++++|++.++-..+ .+.+..+++++.++
T Consensus 71 ~v~ivT~~~~~~~~~~l~~lgl~~~~~~~k--pk~~~~~~~~~~~g 114 (188)
T 2r8e_A 71 EVAIITGRKAKLVEDRCATLGITHLYQGQS--NKLIAFSDLLEKLA 114 (188)
T ss_dssp EEEEECSSCCHHHHHHHHHHTCCEEECSCS--CSHHHHHHHHHHHT
T ss_pred eEEEEeCCChHHHHHHHHHcCCceeecCCC--CCHHHHHHHHHHcC
Confidence 367899988877788899999986554332 34466666666653
No 156
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=33.26 E-value=1.5e+02 Score=22.02 Aligned_cols=50 Identities=18% Similarity=0.242 Sum_probs=31.1
Q ss_pred ccEEEEEcCc-chhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeC
Q psy13615 11 KRVAVLISGT-GTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTY 70 (263)
Q Consensus 11 ~riavl~SG~-Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~ 70 (263)
.++.|++.|+ |+.+...+.+ . +.+++++-.| ..-++.+++.|+++..-+.
T Consensus 8 ~~viIiG~G~~G~~la~~L~~----~---g~~v~vid~~---~~~~~~~~~~g~~~i~gd~ 58 (140)
T 3fwz_A 8 NHALLVGYGRVGSLLGEKLLA----S---DIPLVVIETS---RTRVDELRERGVRAVLGNA 58 (140)
T ss_dssp SCEEEECCSHHHHHHHHHHHH----T---TCCEEEEESC---HHHHHHHHHTTCEEEESCT
T ss_pred CCEEEECcCHHHHHHHHHHHH----C---CCCEEEEECC---HHHHHHHHHcCCCEEECCC
Confidence 4788888888 8776665522 1 2455544332 3446778888998766543
No 157
>2y1e_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; oxidoreductase, DOXP/MEP pathway; 1.65A {Mycobacterium tuberculosis} PDB: 2jcv_A* 2jcz_A* 2jd2_A 2jd1_A 2y1d_A* 2y1c_A 2y1f_A* 2y1g_A* 3ras_A* 4a03_A* 4aic_A* 2jcx_A* 2jcy_A 2jd0_A* 2c82_A
Probab=33.22 E-value=50 Score=30.55 Aligned_cols=55 Identities=27% Similarity=0.288 Sum_probs=40.7
Q ss_pred CccEEEEEcCc--chhHHHHHHHhccccCCCCceEEEEEe-cCCCChhhHHHHHcCCCEEEee
Q psy13615 10 RKRVAVLISGT--GTNLKSLLEATSNRSDIMRAEIVLVVS-NKHNVEGLNIARNAGIPTKVST 69 (263)
Q Consensus 10 ~~riavl~SG~--Gsnl~al~~~~~~~~~~l~~~iv~Vis-n~~~a~gl~~A~~~gIP~~~v~ 69 (263)
|+||++|.|.. |++...++++ ..+ .++|+++.. ++.-..-.+.|++++-.+..+.
T Consensus 21 mk~i~ILGSTGSIGtqtLdVi~~---~pd--~f~V~aLaa~g~nv~~L~~q~~~f~p~~v~v~ 78 (398)
T 2y1e_A 21 RLRVVVLGSTGSIGTQALQVIAD---NPD--RFEVVGLAAGGAHLDTLLRQRAQTGVTNIAVA 78 (398)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHH---CTT--TEEEEEEEECSSCHHHHHHHHHHHCCCCEEES
T ss_pred ceEEEEEccCcHHHHHHHHHHHh---CCC--ceEEEEEEecCCCHHHHHHHHHHcCCCEEEEc
Confidence 57899999977 8888777743 212 378999999 7655555788999997766664
No 158
>2fek_A Low molecular weight protein-tyrosine- phosphatase WZB; phosphate binding, hydrolase; NMR {Escherichia coli K12}
Probab=32.82 E-value=47 Score=26.62 Aligned_cols=53 Identities=11% Similarity=0.168 Sum_probs=32.9
Q ss_pred CccEEEEEcCc---chhHHHHHHHhccccCCCCceEEEEEe---cCCCChhhHHHHHcCCCE
Q psy13615 10 RKRVAVLISGT---GTNLKSLLEATSNRSDIMRAEIVLVVS---NKHNVEGLNIARNAGIPT 65 (263)
Q Consensus 10 ~~riavl~SG~---Gsnl~al~~~~~~~~~~l~~~iv~Vis---n~~~a~gl~~A~~~gIP~ 65 (263)
++||.|+.+|+ ..-.++++.+.. +.+.++=+.+.. +.++-.+++.++++||+.
T Consensus 22 m~~VLFVCtgN~cRSpmAEal~r~~~---~~~~v~SAGt~~~~g~~~~p~a~~vl~e~Gid~ 80 (167)
T 2fek_A 22 FNNILVVCVGNICRSPTAERLLQRYH---PELKVESAGLGALVGKGADPTAISVAAEHQLSL 80 (167)
T ss_dssp CCEEEEEESSSSSHHHHHHHHHHHHC---TTCEEEEEETTCCTTCCCCHHHHHHHHHTTCCC
T ss_pred cCeEEEEcCCcHHHHHHHHHHHHHhc---CCeEEEeeecCCCCCCCCCHHHHHHHHHcCCCc
Confidence 45899999998 555566664421 223222233222 455667888999999985
No 159
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*
Probab=31.86 E-value=54 Score=28.64 Aligned_cols=51 Identities=18% Similarity=0.251 Sum_probs=30.7
Q ss_pred CccEEEEEcCc-chhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEE
Q psy13615 10 RKRVAVLISGT-GTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTK 66 (263)
Q Consensus 10 ~~riavl~SG~-Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~ 66 (263)
+.||+++..|. |..+...+.+ +.. ..++++|...+ ...+.+.|+++|++..
T Consensus 2 ~~rigiIG~G~~g~~~~~~l~~---~~~--~~~l~av~d~~-~~~~~~~~~~~g~~~~ 53 (344)
T 3mz0_A 2 SLRIGVIGTGAIGKEHINRITN---KLS--GAEIVAVTDVN-QEAAQKVVEQYQLNAT 53 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHHHH---TCS--SEEEEEEECSS-HHHHHHHHHHTTCCCE
T ss_pred eEEEEEECccHHHHHHHHHHHh---hCC--CcEEEEEEcCC-HHHHHHHHHHhCCCCe
Confidence 35899999987 6554433311 112 46787765544 3455667888997433
No 160
>3n1u_A Hydrolase, HAD superfamily, subfamily III A; structural genomics, PSI-2; 1.80A {Legionella pneumophila} SCOP: c.108.1.0
Probab=31.62 E-value=91 Score=24.71 Aligned_cols=43 Identities=12% Similarity=0.002 Sum_probs=30.6
Q ss_pred EEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCHHHHHHHHHHh
Q psy13615 42 IVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLILSNSLQVMQKV 86 (263)
Q Consensus 42 iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~~~~~~i~~~l 86 (263)
-++++||++.......++++|++.++-..+ ++.+....+++.+
T Consensus 64 ~~~ivTn~~~~~~~~~l~~lgl~~~~~~~k--pk~~~~~~~~~~~ 106 (191)
T 3n1u_A 64 QVAIITTAQNAVVDHRMEQLGITHYYKGQV--DKRSAYQHLKKTL 106 (191)
T ss_dssp EEEEECSCCSHHHHHHHHHHTCCEEECSCS--SCHHHHHHHHHHH
T ss_pred eEEEEeCcChHHHHHHHHHcCCccceeCCC--ChHHHHHHHHHHh
Confidence 456889988888888999999987665433 3446666666666
No 161
>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}
Probab=31.49 E-value=27 Score=31.34 Aligned_cols=37 Identities=24% Similarity=0.312 Sum_probs=23.4
Q ss_pred ccCCccEEEEE-cCc-chhHHHHHHHhccccCCCCceEEEEEecC
Q psy13615 7 MVQRKRVAVLI-SGT-GTNLKSLLEATSNRSDIMRAEIVLVVSNK 49 (263)
Q Consensus 7 m~~~~riavl~-SG~-Gsnl~al~~~~~~~~~~l~~~iv~Visn~ 49 (263)
|+.++||+|+. +|. |..+-.++.. .. ..+++++.+.+
T Consensus 1 M~~~~kV~IiGAtG~iG~~llr~L~~----~p--~~elv~v~s~~ 39 (345)
T 2ozp_A 1 MTGKKTLSIVGASGYAGGEFLRLALS----HP--YLEVKQVTSRR 39 (345)
T ss_dssp ---CEEEEEETTTSHHHHHHHHHHHT----CT--TEEEEEEBCST
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHc----CC--CcEEEEEECch
Confidence 67778999998 888 8777666621 12 35888777643
No 162
>1ycp_F Fibrinopeptide A-alpha; fibrinopeptide-A, complex (serine protease-peptide), thrombi hydrolase-hydrolase substrate complex; 2.50A {Bos taurus}
Probab=31.20 E-value=16 Score=20.56 Aligned_cols=9 Identities=33% Similarity=0.309 Sum_probs=7.5
Q ss_pred ecCcceeee
Q psy13615 247 SSRNRREKE 255 (263)
Q Consensus 247 ~~~~~~~~e 255 (263)
+.||+||+|
T Consensus 14 gvRGPRvvE 22 (26)
T 1ycp_F 14 GVRGPRVVE 22 (26)
T ss_pred CccCCeeee
Confidence 458999999
No 163
>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A
Probab=30.44 E-value=36 Score=31.81 Aligned_cols=53 Identities=11% Similarity=0.013 Sum_probs=31.2
Q ss_pred eccCCccEEEEEc----Cc-chhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCC
Q psy13615 6 RMVQRKRVAVLIS----GT-GTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIP 64 (263)
Q Consensus 6 ~m~~~~riavl~S----G~-Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP 64 (263)
.||.+.||+|+.. |. |......+.+ ... ..++++|+..+ ...+.+.|+++|+|
T Consensus 35 ~~m~~irvgiIG~g~~GG~~g~~h~~~l~~---~~~--~~~lvav~d~~-~~~a~~~a~~~g~~ 92 (479)
T 2nvw_A 35 PSSRPIRVGFVGLTSGKSWVAKTHFLAIQQ---LSS--QFQIVALYNPT-LKSSLQTIEQLQLK 92 (479)
T ss_dssp GGGCCEEEEEECCCSTTSHHHHTHHHHHHH---TTT--TEEEEEEECSC-HHHHHHHHHHTTCT
T ss_pred CCCCcCEEEEEcccCCCCHHHHHHHHHHHh---cCC--CeEEEEEEeCC-HHHHHHHHHHcCCC
Confidence 3567789999998 43 4333322311 101 36888766544 33445678888987
No 164
>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*
Probab=29.91 E-value=43 Score=29.26 Aligned_cols=54 Identities=15% Similarity=0.197 Sum_probs=28.1
Q ss_pred eeccCCccEEEEEcCc-chhHHHHHHHhccccCCCC-ceEEEEEecCCCC-hhhHHHHHcCCC
Q psy13615 5 TRMVQRKRVAVLISGT-GTNLKSLLEATSNRSDIMR-AEIVLVVSNKHNV-EGLNIARNAGIP 64 (263)
Q Consensus 5 ~~m~~~~riavl~SG~-Gsnl~al~~~~~~~~~~l~-~~iv~Visn~~~a-~gl~~A~~~gIP 64 (263)
++|++++||+|+..|. |+-+-..+. +.+..+ .+|. +.|+... .-++.++++|+.
T Consensus 17 ~~~~~~mkI~iIG~G~mG~ala~~L~----~~G~~~~~~V~--v~~r~~~~~~~~~l~~~G~~ 73 (322)
T 2izz_A 17 NLYFQSMSVGFIGAGQLAFALAKGFT----AAGVLAAHKIM--ASSPDMDLATVSALRKMGVK 73 (322)
T ss_dssp -----CCCEEEESCSHHHHHHHHHHH----HTTSSCGGGEE--EECSCTTSHHHHHHHHHTCE
T ss_pred hhccCCCEEEEECCCHHHHHHHHHHH----HCCCCCcceEE--EECCCccHHHHHHHHHcCCE
Confidence 5788888999999998 776655441 222111 4554 4454322 234555667764
No 165
>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}
Probab=29.69 E-value=41 Score=28.71 Aligned_cols=32 Identities=25% Similarity=0.362 Sum_probs=21.5
Q ss_pred CccEEEEEcCc-chhHHHHHHHhccccCCCCceEEEEEec
Q psy13615 10 RKRVAVLISGT-GTNLKSLLEATSNRSDIMRAEIVLVVSN 48 (263)
Q Consensus 10 ~~riavl~SG~-Gsnl~al~~~~~~~~~~l~~~iv~Visn 48 (263)
|+||+++..|+ |+.+..++.. .+ . ++++++.-
T Consensus 3 MmkI~ViGaGrMG~~i~~~l~~----~~--~-eLva~~d~ 35 (243)
T 3qy9_A 3 SMKILLIGYGAMNQRVARLAEE----KG--H-EIVGVIEN 35 (243)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH----TT--C-EEEEEECS
T ss_pred ceEEEEECcCHHHHHHHHHHHh----CC--C-EEEEEEec
Confidence 67999999987 8777666522 12 3 67766653
No 166
>1zzg_A Glucose-6-phosphate isomerase; structural genomics, riken structural genomics/PR initiative, RSGI, NPPSFA; 1.95A {Thermus thermophilus}
Probab=29.66 E-value=37 Score=31.51 Aligned_cols=57 Identities=12% Similarity=0.086 Sum_probs=37.7
Q ss_pred EEEEEcCcchhHHHHHHHhccc-c-----C-CCCceEEEEEecCCCChhhHHHHHcCCCEEEeeC
Q psy13615 13 VAVLISGTGTNLKSLLEATSNR-S-----D-IMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTY 70 (263)
Q Consensus 13 iavl~SG~Gsnl~al~~~~~~~-~-----~-~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~ 70 (263)
+++.+|.+||..+-+..+...+ + + .....+++ +|++...+=.+.|+++||+++.++.
T Consensus 119 lviviSKSGtT~ET~~~~~~ar~~l~~~~G~~~~~~~va-vT~~~~s~L~~~a~~~Gi~~f~~~d 182 (415)
T 1zzg_A 119 LVNAVSKSGSTAETLAGLAVFLKWLKAHLGEDWRRHLVV-TTDPKEGPLRAFAEREGLKAFAIPK 182 (415)
T ss_dssp EEEEEESSSCCHHHHHHHHHHHHHHHHHHGGGGGGGEEE-EECSSSSHHHHHHHHHTCEEEECCT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHhcCccccCeEEE-EeCCCCChHHHHHHHhCCcEEEecc
Confidence 8899999998887775322111 1 1 11245554 5555567777899999999888864
No 167
>2q8n_A Glucose-6-phosphate isomerase; TM1385, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: 2PE; 1.82A {Thermotoga maritima MSB8}
Probab=29.47 E-value=56 Score=30.76 Aligned_cols=60 Identities=12% Similarity=0.097 Sum_probs=38.8
Q ss_pred Ccc-EEEEEcCcchhHHHHHHHhccc-c-----CCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeC
Q psy13615 10 RKR-VAVLISGTGTNLKSLLEATSNR-S-----DIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTY 70 (263)
Q Consensus 10 ~~r-iavl~SG~Gsnl~al~~~~~~~-~-----~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~ 70 (263)
+.+ +++.+|.+||..+-+..+...+ + +.....+++ +|++...+=.+.|+++||+++.+..
T Consensus 139 ~~~TlvIviSKSGtT~ET~~~~~~ar~~l~~~~G~~~~~~VA-vT~~~~s~L~~~A~~~Gi~~f~~~d 205 (460)
T 2q8n_A 139 PKTTLFNVISKSGSTAEVMATYSIARGILEAYGLDPREHMLI-TTDPEKGFLRKLVKEEGFRSLEVPP 205 (460)
T ss_dssp GGGEEEEEECSSSCCHHHHHHHHHHHHHHHHTTCCGGGTEEE-EECSSSSHHHHHHHHHTCEEEECCT
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCccCeEEE-EeCCCCChHHHHHHHhCCceEeecc
Confidence 444 7899999998887775322111 1 212245554 5555567777889999999888864
No 168
>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}
Probab=28.83 E-value=43 Score=29.14 Aligned_cols=35 Identities=23% Similarity=0.273 Sum_probs=20.5
Q ss_pred CCccEEEEEcCc-chhHHHHHHHhccccCCCCceEEEEEecC
Q psy13615 9 QRKRVAVLISGT-GTNLKSLLEATSNRSDIMRAEIVLVVSNK 49 (263)
Q Consensus 9 ~~~riavl~SG~-Gsnl~al~~~~~~~~~~l~~~iv~Visn~ 49 (263)
.+.||+++..|+ |+.+...+.+ .. ..++++|+..+
T Consensus 8 ~~irv~IIG~G~iG~~~~~~l~~----~~--~~elvav~d~~ 43 (304)
T 3bio_A 8 KKIRAAIVGYGNIGRYALQALRE----AP--DFEIAGIVRRN 43 (304)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHH----CT--TEEEEEEECC-
T ss_pred CCCEEEEECChHHHHHHHHHHhc----CC--CCEEEEEEcCC
Confidence 467899998887 6655443321 12 35777766433
No 169
>1jf8_A Arsenate reductase; ptpase I fold, P-loop, sulfinic acid, oxidoreductase; 1.12A {Staphylococcus aureus} SCOP: c.44.1.1 PDB: 1jfv_A 2fxi_A 1lju_A* 1rxi_A 1rxe_A 1ljl_A 2cd7_A 1lk0_A
Probab=28.15 E-value=61 Score=24.60 Aligned_cols=54 Identities=7% Similarity=0.060 Sum_probs=32.7
Q ss_pred CccEEEEEcCc---chhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCE
Q psy13615 10 RKRVAVLISGT---GTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPT 65 (263)
Q Consensus 10 ~~riavl~SG~---Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~ 65 (263)
++||.|+.+|+ ..-.++++.+.. . ..+..+=+++-...++-.+++.++++||+.
T Consensus 3 ~~~VLFVC~gN~cRSpmAEa~~~~~~-~-~~~~v~SAGt~~~~~~p~a~~~l~~~Gid~ 59 (131)
T 1jf8_A 3 KKTIYFISTGNSARSQMAEGWGKEIL-G-EGWNVYSAGIETHGVNPKAIEAMKEVDIDI 59 (131)
T ss_dssp CEEEEEEESSSSSHHHHHHHHHHHHS-T-TTEEEEEEESSCCCCCHHHHHHHHHTTCCC
T ss_pred CCEEEEEcCCcchHHHHHHHHHHHhc-C-CCEEEEcCcCCCCCCCHHHHHHHHHcCCCc
Confidence 56899999998 555666665422 1 222222233333345567788899999985
No 170
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=26.65 E-value=1.2e+02 Score=27.41 Aligned_cols=46 Identities=20% Similarity=0.189 Sum_probs=28.4
Q ss_pred ccCCccEEEEEcCcchhHHHHHHHhccccCCCCceEEEEEec-CCCChhhHHHH
Q psy13615 7 MVQRKRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSN-KHNVEGLNIAR 59 (263)
Q Consensus 7 m~~~~riavl~SG~Gsnl~al~~~~~~~~~~l~~~iv~Visn-~~~a~gl~~A~ 59 (263)
|| ++||.| .|+|.....++.+. + +++.+++++.++ +++++....|.
T Consensus 4 m~-~~kiLI--~g~g~~a~~i~~aa--~--~~G~~~v~v~~~~~~~~~~~~~ad 50 (446)
T 3ouz_A 4 ME-IKSILI--ANRGEIALRALRTI--K--EMGKKAICVYSEADKDALYLKYAD 50 (446)
T ss_dssp TC-CCEEEE--CCCHHHHHHHHHHH--H--HTTCEEEEEEEGGGTTCTHHHHSS
T ss_pred cc-cceEEE--ECCCHHHHHHHHHH--H--HcCCEEEEEEcCcccccchHhhCC
Confidence 44 456654 56777666666442 2 346788888776 45677666554
No 171
>2wmy_A WZB, putative acid phosphatase WZB; hydrolase; 2.21A {Escherichia coli}
Probab=26.48 E-value=70 Score=24.87 Aligned_cols=52 Identities=13% Similarity=0.160 Sum_probs=32.2
Q ss_pred ccEEEEEcCc---chhHHHHHHHhccccCCCCceEEEEEe---cCCCChhhHHHHHcCCCE
Q psy13615 11 KRVAVLISGT---GTNLKSLLEATSNRSDIMRAEIVLVVS---NKHNVEGLNIARNAGIPT 65 (263)
Q Consensus 11 ~riavl~SG~---Gsnl~al~~~~~~~~~~l~~~iv~Vis---n~~~a~gl~~A~~~gIP~ 65 (263)
+||.|+.+|+ ..-.++++.+.. +.+..+=+.+.. +.++-.+++.++++||+.
T Consensus 9 ~~VLFVC~gN~cRSpmAEal~r~~~---~~~~v~SAGt~~~~g~~~~p~a~~~l~e~Gid~ 66 (150)
T 2wmy_A 9 DSILVICTGNICRSPIGERLLRRLL---PSKKINSAGVGALVDHTADESAIRVAEKNGLCL 66 (150)
T ss_dssp CEEEEEESSSSSHHHHHHHHHHHHC---TTSEEEEEETTCCTTCCCCHHHHHHHHHTTCCC
T ss_pred CEEEEEcCCchHHHHHHHHHHHHhc---CCCEEEeccccCCCCCCCCHHHHHHHHHcCCCc
Confidence 4899999998 555566664422 223222222221 355667888999999985
No 172
>3au8_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH binding; HET: NDP; 1.86A {Plasmodium falciparum} PDB: 3au9_A* 3aua_A*
Probab=26.23 E-value=78 Score=30.02 Aligned_cols=60 Identities=18% Similarity=0.054 Sum_probs=41.9
Q ss_pred CCccEEEEEcCc--chhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeC
Q psy13615 9 QRKRVAVLISGT--GTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTY 70 (263)
Q Consensus 9 ~~~riavl~SG~--Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~ 70 (263)
.|+||++|+|.. |++...++++.....+ .++|+++..++.-..-.+.|++++-.+..+..
T Consensus 76 ~mk~I~ILGSTGSIGtqTLdVi~~~p~~pd--~f~V~aLaAg~Nv~lL~eQ~~ef~P~~v~v~d 137 (488)
T 3au8_A 76 KPINVAIFGSTGSIGTNALNIIRECNKIEN--VFNVKALYVNKSVNELYEQAREFLPEYLCIHD 137 (488)
T ss_dssp -CEEEEEETTTSHHHHHHHHHHHHHHHHSC--CEEEEEEEESSCHHHHHHHHHHHCCSEEEESC
T ss_pred cceEEEEEccCcHHHHHHHHHHHcccCCCC--eEEEEEEEcCCCHHHHHHHHHHcCCCEEEEcC
Confidence 467899999977 8887777743100112 37899999987555667889999977766643
No 173
>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A
Probab=25.98 E-value=50 Score=29.73 Aligned_cols=38 Identities=21% Similarity=0.368 Sum_probs=23.3
Q ss_pred eeccCCccEEEEE-cCc-chhHHHHHHHhccccCCCCceEEEEEec
Q psy13615 5 TRMVQRKRVAVLI-SGT-GTNLKSLLEATSNRSDIMRAEIVLVVSN 48 (263)
Q Consensus 5 ~~m~~~~riavl~-SG~-Gsnl~al~~~~~~~~~~l~~~iv~Visn 48 (263)
++||.+.||+|.. +|. |..+-.++.. .. ..+++++.+.
T Consensus 11 ~~~M~~~kV~IiGAtG~iG~~llr~L~~----~p--~~elvai~~~ 50 (359)
T 1xyg_A 11 VKPEKDIRIGLLGASGYTGAEIVRLLAN----HP--HFQVTLMTAD 50 (359)
T ss_dssp ----CCEEEEEECCSSHHHHHHHHHHHT----CS--SEEEEEEBCS
T ss_pred cccccCcEEEEECcCCHHHHHHHHHHHc----CC--CcEEEEEeCc
Confidence 4566677899997 888 8777666521 12 3588877764
No 174
>3jvi_A Protein tyrosine phosphatase; niaid, ssgcid, seattle structural genomics center for infect disease, parasitic protozoan, dysentery; 1.80A {Entamoeba histolytica} PDB: 3js5_A* 3ily_A 3ido_A*
Probab=25.77 E-value=63 Score=25.54 Aligned_cols=56 Identities=5% Similarity=0.113 Sum_probs=32.9
Q ss_pred CccEEEEEcCc---chhHHHHHHHhccccC---CCCceEEEEEe----cCCCChhhHHHHHcCCCE
Q psy13615 10 RKRVAVLISGT---GTNLKSLLEATSNRSD---IMRAEIVLVVS----NKHNVEGLNIARNAGIPT 65 (263)
Q Consensus 10 ~~riavl~SG~---Gsnl~al~~~~~~~~~---~l~~~iv~Vis----n~~~a~gl~~A~~~gIP~ 65 (263)
|+||.|+.+|+ ..-.++++.+...+.+ .+..+=+.+.. +.++..+++.++++||+.
T Consensus 4 m~~vLFVC~gN~cRSpmAE~~~~~~~~~~gl~~~~~v~SAGt~~~~~G~~~~~~a~~~l~~~Gid~ 69 (161)
T 3jvi_A 4 SMKLLFVCLGNICRSPAAEAVMKKVIQNHHLTEKYICDSAGTCSYHEGQQADSRMRKVGKSRGYQV 69 (161)
T ss_dssp CEEEEEEESSSSSHHHHHHHHHHHHHHHTTCGGGEEEEEEESCCTTTTCBCCHHHHHHHHHTTCCC
T ss_pred CcEEEEECCCchhHHHHHHHHHHHHHHHcCCCCcEEEEeeecCCcccCCCCCHHHHHHHHHcCcCC
Confidence 56899999998 4555666544322211 12222233322 234667889999999996
No 175
>3mmz_A Putative HAD family hydrolase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.84A {Streptomyces avermitilis}
Probab=25.40 E-value=1.2e+02 Score=23.61 Aligned_cols=43 Identities=21% Similarity=0.122 Sum_probs=29.2
Q ss_pred EEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCHHHHHHHHHHhc
Q psy13615 42 IVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLILSNSLQVMQKVG 87 (263)
Q Consensus 42 iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~~~~~~i~~~l~ 87 (263)
-++++||++.......++++||+ ++... .++.+..+.+++.++
T Consensus 57 ~~~i~T~~~~~~~~~~~~~lgi~-~~~~~--~~k~~~l~~~~~~~~ 99 (176)
T 3mmz_A 57 TMLILSTEQNPVVAARARKLKIP-VLHGI--DRKDLALKQWCEEQG 99 (176)
T ss_dssp EEEEEESSCCHHHHHHHHHHTCC-EEESC--SCHHHHHHHHHHHHT
T ss_pred eEEEEECcChHHHHHHHHHcCCe-eEeCC--CChHHHHHHHHHHcC
Confidence 35688988888888899999999 33322 223366666666663
No 176
>3ff1_A Glucose-6-phosphate isomerase; alpha beta, rossmann fold, gluconeogenesis, glycolysis, structural genomics; HET: G6Q; 1.65A {Staphylococcus aureus subsp} SCOP: c.80.1.2 PDB: 3ifs_A*
Probab=25.40 E-value=49 Score=31.06 Aligned_cols=58 Identities=19% Similarity=0.121 Sum_probs=37.4
Q ss_pred cEEEEEcCcchhHHHHHHHhcc------ccC--CCCceEEEEEecCCCChhhHHHHHcCCCEEEeeC
Q psy13615 12 RVAVLISGTGTNLKSLLEATSN------RSD--IMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTY 70 (263)
Q Consensus 12 riavl~SG~Gsnl~al~~~~~~------~~~--~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~ 70 (263)
...+.+|.+||..+-+..+... +.+ .....+++| ||....+--+.|+++||+++.+..
T Consensus 135 Tl~iViSKSgtT~ET~~n~~~~r~~l~~~~g~~~~~~h~vav-T~~~~g~L~~~a~~~G~~~F~~~d 200 (446)
T 3ff1_A 135 FSVNVISKSGTTTEPAVAFRLFKQLVEERYGKEEAQKRIFAT-TDKEKGALKQLATNEGYETFIVPD 200 (446)
T ss_dssp EEEEEECSSSCCHHHHHHHHHHHHHHHHHHCHHHHHHHEEEE-ECSSCSHHHHHHHHHTCEEEECCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCcccccceEEEE-eCCCcchhhhHHHHcCCeEEEecc
Confidence 4678899999888776532211 111 011346665 876555656789999999888754
No 177
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}
Probab=25.28 E-value=85 Score=27.19 Aligned_cols=53 Identities=15% Similarity=0.119 Sum_probs=28.5
Q ss_pred cCCccEEEEEcCc-chhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEE
Q psy13615 8 VQRKRVAVLISGT-GTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTK 66 (263)
Q Consensus 8 ~~~~riavl~SG~-Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~ 66 (263)
+.+.||+|+..|. |..+...+.. +.. ..++++|+..++ ...-+.|+++|++..
T Consensus 6 ~~~~~v~iiG~G~ig~~~~~~l~~---~~~--~~~~vav~d~~~-~~~~~~a~~~g~~~~ 59 (346)
T 3cea_A 6 RKPLRAAIIGLGRLGERHARHLVN---KIQ--GVKLVAACALDS-NQLEWAKNELGVETT 59 (346)
T ss_dssp CCCEEEEEECCSTTHHHHHHHHHH---TCS--SEEEEEEECSCH-HHHHHHHHTTCCSEE
T ss_pred CCcceEEEEcCCHHHHHHHHHHHh---cCC--CcEEEEEecCCH-HHHHHHHHHhCCCcc
Confidence 3467899998887 6544333310 111 356766554332 233345667777533
No 178
>3by5_A Cobalamin biosynthesis protein; structural genomics, unknown function; 2.52A {Agrobacterium tumefaciens str} SCOP: c.151.1.1
Probab=24.90 E-value=53 Score=26.26 Aligned_cols=56 Identities=13% Similarity=0.166 Sum_probs=32.3
Q ss_pred EEEEcCcchhHHHHHHHhcc--ccCCCCceEEEEEecCCCChh-hHHHHHcCCCEEEee
Q psy13615 14 AVLISGTGTNLKSLLEATSN--RSDIMRAEIVLVVSNKHNVEG-LNIARNAGIPTKVST 69 (263)
Q Consensus 14 avl~SG~Gsnl~al~~~~~~--~~~~l~~~iv~Visn~~~a~g-l~~A~~~gIP~~~v~ 69 (263)
+-+..-+|+..+.|.+++.. +...+.....+-+.-+.+-+| ++.|+++|+|..+++
T Consensus 13 vGIGcrrg~~~~~i~~ai~~aL~~~gl~v~~lATid~K~dE~gL~e~A~~lgvPl~~~~ 71 (155)
T 3by5_A 13 AGIGCRKGAASDAIIAAVRAAERAFGVTVDYLATAPLKADEAGLAEAAKGLSLSLEIVA 71 (155)
T ss_dssp EEEEECSSCCHHHHHHHHHHHHHHHTCCCCEEEESSCCSCCHHHHHHHHHTTCCEEECC
T ss_pred EEEccCCCCCHHHHHHHHHHHHHHCCCCeEEEEchhhhCCCHHHHHHHHHhCCCeEEEC
Confidence 34666677766555433221 111222333444444656666 788999999999984
No 179
>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A
Probab=24.70 E-value=65 Score=29.47 Aligned_cols=50 Identities=12% Similarity=0.010 Sum_probs=30.6
Q ss_pred CCccEEEEEc----Cc-chhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCC
Q psy13615 9 QRKRVAVLIS----GT-GTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIP 64 (263)
Q Consensus 9 ~~~riavl~S----G~-Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP 64 (263)
++.||+|+.. |. |+.....+.+ .. . ..++++|+..++ ..+.+.|+++|+|
T Consensus 19 ~~irvgiIG~g~~gG~~g~~~~~~l~~--~~-~--~~~lvav~d~~~-~~~~~~a~~~g~~ 73 (438)
T 3btv_A 19 APIRVGFVGLNAAKGWAIKTHYPAILQ--LS-S--QFQITALYSPKI-ETSIATIQRLKLS 73 (438)
T ss_dssp CCEEEEEESCCTTSSSTTTTHHHHHHH--TT-T--TEEEEEEECSSH-HHHHHHHHHTTCT
T ss_pred CCCEEEEEcccCCCChHHHHHHHHHHh--cC-C--CeEEEEEEeCCH-HHHHHHHHHcCCC
Confidence 4678999988 55 5544444422 10 1 368887765443 3455678888987
No 180
>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii}
Probab=24.34 E-value=51 Score=29.49 Aligned_cols=34 Identities=26% Similarity=0.454 Sum_probs=23.4
Q ss_pred ccCCccEEEEE-cCc-chhHHHHHHHhccccCCCCceEEEEE
Q psy13615 7 MVQRKRVAVLI-SGT-GTNLKSLLEATSNRSDIMRAEIVLVV 46 (263)
Q Consensus 7 m~~~~riavl~-SG~-Gsnl~al~~~~~~~~~~l~~~iv~Vi 46 (263)
|+.+.||+|+. +|. |..+-.++. +.. ..+++++.
T Consensus 1 m~~~~kV~IiGAtG~iG~~llr~L~----~~p--~~elvai~ 36 (350)
T 2ep5_A 1 MADKIKVSLLGSTGMVGQKMVKMLA----KHP--YLELVKVS 36 (350)
T ss_dssp -CCCEEEEEESCSSHHHHHHHHHHT----TCS--SEEEEEEE
T ss_pred CCCCcEEEEECcCCHHHHHHHHHHH----hCC--CcEEEEEe
Confidence 66678999997 898 877766662 112 36888887
No 181
>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9
Probab=24.31 E-value=84 Score=27.85 Aligned_cols=54 Identities=7% Similarity=-0.068 Sum_probs=31.7
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHHHhc-CCCeEEEEeeccccccCCceeeecCcceeeeeCCCCC
Q psy13615 197 PCDILTEAQKKEIHDTILMRVIKKMIAE-GTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEG 261 (263)
Q Consensus 197 pv~i~~~~~~~~i~~~il~~~i~~~~~e-g~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~g 261 (263)
|.. .+++..+++. ++...+++++.+. +-.+.|.+-.. ...+. .+.|.|+|+|||
T Consensus 216 P~~-~~~~~~~~a~-~~a~~i~~~L~~l~~~g~~G~~~vE-~~~dg--------~~~v~EIapR~~ 270 (320)
T 2pbz_A 216 AIA-LRESLLPQLY-DYGLAFVRTMRELEPPGVIGPFALH-FAYDG--------SFKAIGIASRID 270 (320)
T ss_dssp ECE-ECGGGHHHHH-HHHHHHHHHHHHHSTTCCCSEEEEE-EECSS--------SCEEEEEESSBC
T ss_pred CCc-cCHHHHHHHH-HHHHHHHHHHHhhccCCceeeEEEE-EcCCC--------cEEEEEecCCCC
Confidence 443 3555666653 6666666776432 11468888777 31122 246789999976
No 182
>3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.60A {Bacteroides thetaiotaomicron}
Probab=24.26 E-value=1.4e+02 Score=24.75 Aligned_cols=89 Identities=15% Similarity=0.037 Sum_probs=47.3
Q ss_pred CccEEEEEcCc-c----hhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCC-EEEeeCCCCCC--H-HHHH
Q psy13615 10 RKRVAVLISGT-G----TNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIP-TKVSTYKHTLI--L-SNSL 80 (263)
Q Consensus 10 ~~riavl~SG~-G----snl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP-~~~v~~~~~~~--~-~~~~ 80 (263)
|++|-||+-.. | ..++.|-.+...+ +.++.++++|+........++.|.++|.. +++++...+.. . .+..
T Consensus 3 m~~ilV~~E~~~g~l~~~s~ell~~A~~La-~~~g~~v~av~~G~~~~~~~~~~~~~Gad~v~~v~~~~~~~~~~~~~a~ 81 (217)
T 3ih5_A 3 ANNLFVYCEIEEGIVADVSLELLTKGRSLA-NELNCQLEAVVAGTGLKEIEKQILPYGVDKLHVFDAEGLYPYTSLPHTS 81 (217)
T ss_dssp CCCEEEECCEETTEECHHHHHHHHHHHHHH-HHHTCCEEEEEEESCCTTTHHHHGGGTCSEEEEEECGGGSSCCHHHHHH
T ss_pred cccEEEEEECcCCEECHHHHHHHHHHHHHH-HhcCCeEEEEEECCCHHHHHHHHHhcCCCEEEEecCcccccCCHHHHHH
Confidence 45688887654 2 3455543221111 11234666666554333446777788987 55666554433 2 3444
Q ss_pred HHHHHhccccCCCCceeeeccccccCCCCcCCCcEEEeee
Q psy13615 81 QVMQKVGAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGF 120 (263)
Q Consensus 81 ~i~~~l~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~ 120 (263)
.+.+.+ +. ++||+|.+...
T Consensus 82 ~l~~~i--~~-------------------~~p~~Vl~g~t 100 (217)
T 3ih5_A 82 ILVNLF--KE-------------------EQPQICLMGAT 100 (217)
T ss_dssp HHHHHH--HH-------------------HCCSEEEEECS
T ss_pred HHHHHH--Hh-------------------cCCCEEEEeCC
Confidence 444434 55 77887766543
No 183
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=23.91 E-value=1.5e+02 Score=22.21 Aligned_cols=53 Identities=8% Similarity=0.056 Sum_probs=26.7
Q ss_pred CccEEEEEcCc-chhHHHHHHHhccccCCCCceEEEEEecCC-CChhhHHHHHcCCCEEEee
Q psy13615 10 RKRVAVLISGT-GTNLKSLLEATSNRSDIMRAEIVLVVSNKH-NVEGLNIARNAGIPTKVST 69 (263)
Q Consensus 10 ~~riavl~SG~-Gsnl~al~~~~~~~~~~l~~~iv~Visn~~-~a~gl~~A~~~gIP~~~v~ 69 (263)
+.++.|++.|. |+.+-..+. +. +.+++++-.|.+ .+.-++.....|+++..-+
T Consensus 3 ~~~vlI~G~G~vG~~la~~L~----~~---g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd 57 (153)
T 1id1_A 3 KDHFIVCGHSILAINTILQLN----QR---GQNVTVISNLPEDDIKQLEQRLGDNADVIPGD 57 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHH----HT---TCCEEEEECCCHHHHHHHHHHHCTTCEEEESC
T ss_pred CCcEEEECCCHHHHHHHHHHH----HC---CCCEEEEECCChHHHHHHHHhhcCCCeEEEcC
Confidence 55788887766 665554442 11 246654433221 1223333344577765544
No 184
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Probab=23.77 E-value=37 Score=29.91 Aligned_cols=41 Identities=24% Similarity=0.363 Sum_probs=22.9
Q ss_pred eeeeccCCccEEEEE-cCc-chhHHHHHHHhccccCCCCceEEEEEecC
Q psy13615 3 VKTRMVQRKRVAVLI-SGT-GTNLKSLLEATSNRSDIMRAEIVLVVSNK 49 (263)
Q Consensus 3 ~~~~m~~~~riavl~-SG~-Gsnl~al~~~~~~~~~~l~~~iv~Visn~ 49 (263)
-|+-|+.+.||++.. +|+ |+-+...+. +.. ..++++++..+
T Consensus 14 ~~~~m~~~irV~V~Ga~GrMGr~i~~~v~----~~~--~~eLvg~vd~~ 56 (288)
T 3ijp_A 14 AQTQGPGSMRLTVVGANGRMGRELITAIQ----RRK--DVELCAVLVRK 56 (288)
T ss_dssp -------CEEEEESSTTSHHHHHHHHHHH----TCS--SEEEEEEBCCT
T ss_pred hhhhccCCeEEEEECCCCHHHHHHHHHHH----hCC--CCEEEEEEecC
Confidence 477888888999887 787 876555542 112 46888887654
No 185
>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}
Probab=23.74 E-value=1.9e+02 Score=21.46 Aligned_cols=43 Identities=12% Similarity=0.098 Sum_probs=28.7
Q ss_pred EEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCHHHHHHHHHHh
Q psy13615 42 IVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLILSNSLQVMQKV 86 (263)
Q Consensus 42 iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~~~~~~i~~~l 86 (263)
-++++||++.......++++|+..++-.. ..+.+..+.+++.+
T Consensus 54 ~~~i~T~~~~~~~~~~l~~~gl~~~~~~~--kp~~~~~~~~~~~~ 96 (162)
T 2p9j_A 54 TLAVISGRDSAPLITRLKELGVEEIYTGS--YKKLEIYEKIKEKY 96 (162)
T ss_dssp EEEEEESCCCHHHHHHHHHTTCCEEEECC----CHHHHHHHHHHT
T ss_pred EEEEEeCCCcHHHHHHHHHcCCHhhccCC--CCCHHHHHHHHHHc
Confidence 35688999887778889999998655432 23445555566655
No 186
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X*
Probab=23.62 E-value=72 Score=27.28 Aligned_cols=11 Identities=9% Similarity=-0.266 Sum_probs=9.3
Q ss_pred ceeeeeCCCCC
Q psy13615 251 RREKEDNPEEG 261 (263)
Q Consensus 251 ~~~~e~n~~~g 261 (263)
..++|+|.++|
T Consensus 290 ~~vlEvN~~Pg 300 (324)
T 1z2n_X 290 PLVVDVNVFPS 300 (324)
T ss_dssp CEEEEEEESCC
T ss_pred EEEEEEcCCCC
Confidence 46889999987
No 187
>4gmk_A Ribose-5-phosphate isomerase A; D-ribose-5-phosphate isomerase family, ribose 5-phosphate isomerisation; 1.72A {Lactobacillus salivarius}
Probab=23.53 E-value=26 Score=29.95 Aligned_cols=52 Identities=23% Similarity=0.282 Sum_probs=33.6
Q ss_pred EEEcCcchhHHHHHHHhcc--ccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCC
Q psy13615 15 VLISGTGTNLKSLLEATSN--RSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYK 71 (263)
Q Consensus 15 vl~SG~Gsnl~al~~~~~~--~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~ 71 (263)
++.-|+||.....+++... +.+.+ ++.+|-|.. .-.+.|+++|||+.-++..
T Consensus 24 vvGlGTGSTv~~~i~~L~~~~~~~~l--~i~~V~tS~---~t~~~a~~~Gi~l~~l~~~ 77 (228)
T 4gmk_A 24 IVGLGTGSTVKYMVDALGKRVNEEGL--DIVGVTTSI---RTAEQAKSLGIVIKDIDEV 77 (228)
T ss_dssp EEEECCSHHHHHHHHHHHHHHHHHCC--CCEEEESSH---HHHHHHHHTTCCBCCGGGS
T ss_pred EEEECchHHHHHHHHHHHHHHhhcCC--cEEEEeCcH---HHHHHHHHcCCceeChHHC
Confidence 4666788887777765422 12223 677776643 4467899999998777643
No 188
>1n2z_A Vitamin B12 transport protein BTUF; HET: CNC PG4; 2.00A {Escherichia coli} SCOP: c.92.2.2 PDB: 2qi9_F* 4dbl_E 1n4a_A* 1n4d_A
Probab=23.33 E-value=48 Score=27.30 Aligned_cols=52 Identities=12% Similarity=0.211 Sum_probs=34.3
Q ss_pred cEEEEEcCcchhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCC
Q psy13615 12 RVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYK 71 (263)
Q Consensus 12 riavl~SG~Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~ 71 (263)
++..+.+....|++.|+.. .-|+++...........+.-++.|||+.+++..
T Consensus 38 ~~p~vg~~~~~n~E~i~~l--------~PDLIi~~~~~~~~~~~~~L~~~gipvv~~~~~ 89 (245)
T 1n2z_A 38 KIEQVSTWQGMNLERIVAL--------KPDLVIAWRGGNAERQVDQLASLGIKVMWVDAT 89 (245)
T ss_dssp GSCEEEETTEECHHHHHHT--------CCSEEEECTTTSCHHHHHHHHHHTCCEEECCCC
T ss_pred CCCeeCCCCCCCHHHHhcc--------CCCEEEEeCCCCcHHHHHHHHHCCCcEEEeCCC
Confidence 4556677677899999832 247765422222334577788999999988653
No 189
>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}
Probab=23.28 E-value=50 Score=29.05 Aligned_cols=19 Identities=21% Similarity=0.308 Sum_probs=15.5
Q ss_pred eeccCCccEEEEEcCc-chh
Q psy13615 5 TRMVQRKRVAVLISGT-GTN 23 (263)
Q Consensus 5 ~~m~~~~riavl~SG~-Gsn 23 (263)
.+|+.+.||+++..|. |..
T Consensus 2 ~~M~~~~rvgiiG~G~~g~~ 21 (352)
T 3kux_A 2 NAMADKIKVGLLGYGYASKT 21 (352)
T ss_dssp CTTTCCEEEEEECCSHHHHH
T ss_pred CcccCCceEEEECCCHHHHH
Confidence 4688889999999998 654
No 190
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=22.82 E-value=78 Score=27.41 Aligned_cols=52 Identities=15% Similarity=0.137 Sum_probs=31.1
Q ss_pred CccEEEEEcCc-chhHHH--HHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEee
Q psy13615 10 RKRVAVLISGT-GTNLKS--LLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVST 69 (263)
Q Consensus 10 ~~riavl~SG~-Gsnl~a--l~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~ 69 (263)
|+||.++..+. |+-... |.++.. +. +.+|..+.+. .-.+..++.|+++..++
T Consensus 4 M~~il~~~~~~~Ghv~~~~~La~~L~-~~---GheV~v~~~~----~~~~~~~~~G~~~~~~~ 58 (402)
T 3ia7_A 4 QRHILFANVQGHGHVYPSLGLVSELA-RR---GHRITYVTTP----LFADEVKAAGAEVVLYK 58 (402)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHH-HT---TCEEEEEECH----HHHHHHHHTTCEEEECC
T ss_pred CCEEEEEeCCCCcccccHHHHHHHHH-hC---CCEEEEEcCH----HHHHHHHHcCCEEEecc
Confidence 66898877765 543332 333322 22 4687765542 34566788999988775
No 191
>3out_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, MURI, cell envelope; HET: MSE DGL; 1.65A {Francisella tularensis subsp}
Probab=22.42 E-value=38 Score=29.27 Aligned_cols=23 Identities=35% Similarity=0.605 Sum_probs=17.4
Q ss_pred ccCCccEEEEEcCcc--hhHHHHHH
Q psy13615 7 MVQRKRVAVLISGTG--TNLKSLLE 29 (263)
Q Consensus 7 m~~~~riavl~SG~G--snl~al~~ 29 (263)
||....|+||=||-| |-++.+.+
T Consensus 4 ~~~~~pIgvfDSGvGGLtv~~~i~~ 28 (268)
T 3out_A 4 MLDNRPIGVFDSGIGGLTIVKNLMS 28 (268)
T ss_dssp -CTTSCEEEEESSSTTHHHHHHHHH
T ss_pred cCCCCcEEEEECCCChHHHHHHHHH
Confidence 777778999999997 66676663
No 192
>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*
Probab=22.41 E-value=95 Score=26.34 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=16.9
Q ss_pred ccCCccEEEEEcCc-chhHHHHH
Q psy13615 7 MVQRKRVAVLISGT-GTNLKSLL 28 (263)
Q Consensus 7 m~~~~riavl~SG~-Gsnl~al~ 28 (263)
||..+||+|+..|. |+-+...+
T Consensus 1 Mm~~~kV~VIGaG~mG~~iA~~l 23 (283)
T 4e12_A 1 MTGITNVTVLGTGVLGSQIAFQT 23 (283)
T ss_dssp CCSCCEEEEECCSHHHHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHH
Confidence 77788999999888 77665544
No 193
>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1
Probab=21.93 E-value=1.5e+02 Score=26.12 Aligned_cols=50 Identities=24% Similarity=0.292 Sum_probs=31.0
Q ss_pred CccEEEEEcCc-chhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEE
Q psy13615 10 RKRVAVLISGT-GTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTK 66 (263)
Q Consensus 10 ~~riavl~SG~-Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~ 66 (263)
|.|+++...|. |..+-.++. +.. ..+++++..-++ ....+.++++|++++
T Consensus 2 ~irVgIiG~G~iG~~~~r~l~----~~~--~~elvav~d~~~-~~~~~~~~~~g~~~~ 52 (334)
T 2czc_A 2 KVKVGVNGYGTIGKRVAYAVT----KQD--DMELIGITKTKP-DFEAYRAKELGIPVY 52 (334)
T ss_dssp CEEEEEECCSHHHHHHHHHHH----TCT--TEEEEEEEESSC-SHHHHHHHHTTCCEE
T ss_pred CcEEEEEeEhHHHHHHHHHHh----cCC--CCEEEEEEcCCH-HHHHHHHHhcCcccc
Confidence 36899999987 765554442 112 368888776443 344466777777643
No 194
>4hn9_A Iron complex transport system substrate-binding P; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.85A {Eubacterium eligens}
Probab=21.82 E-value=70 Score=27.83 Aligned_cols=50 Identities=12% Similarity=0.135 Sum_probs=34.8
Q ss_pred cEEEEEcCcchhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCC
Q psy13615 12 RVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYK 71 (263)
Q Consensus 12 riavl~SG~Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~ 71 (263)
++..+.++...|++.|+.. ..|+++.... .....+.-++.|||+.+++..
T Consensus 97 ~~p~vG~~~~~n~E~i~al--------~PDLIi~~~~--~~~~~~~L~~~gipvv~~~~~ 146 (335)
T 4hn9_A 97 SLPNMGTAKEFNTEACVAA--------TPDVVFLPMK--LKKTADTLESLGIKAVVVNPE 146 (335)
T ss_dssp GSCEEEETTEECHHHHHHT--------CCSEEEEEGG--GHHHHHHHHHTTCCEEEECCC
T ss_pred hCCccCCCCCCCHHHHHhc--------CCCEEEEeCc--chhHHHHHHHcCCCEEEEcCC
Confidence 4666777778899999832 2477654332 334567788999999999754
No 195
>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A*
Probab=21.70 E-value=1.1e+02 Score=28.13 Aligned_cols=55 Identities=18% Similarity=0.218 Sum_probs=35.8
Q ss_pred ccEEEEEcCc--chhHHHHHHHhccccCCCCceEEEEEecCCC----ChhhHHHHHcCC-CEEEeeCC
Q psy13615 11 KRVAVLISGT--GTNLKSLLEATSNRSDIMRAEIVLVVSNKHN----VEGLNIARNAGI-PTKVSTYK 71 (263)
Q Consensus 11 ~riavl~SG~--Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~----a~gl~~A~~~gI-P~~~v~~~ 71 (263)
.|+++..||. .|-+..++.. . ++.++.++..|... ..+-+.|+++|+ |..+++..
T Consensus 1 ~kVvva~SGG~DSsvll~ll~~---~---~g~~V~av~vd~g~~~e~e~a~~~A~~lGi~~~~vvd~~ 62 (400)
T 1kor_A 1 MKIVLAYSGGLDTSIILKWLKE---T---YRAEVIAFTADIGQGEEVEEAREKALRTGASKAIALDLK 62 (400)
T ss_dssp CEEEEECCSSHHHHHHHHHHHH---H---HTCEEEEEEEESSCSSCHHHHHHHHHHHTCSEEEEEECH
T ss_pred CcEEEEEeChHHHHHHHHHHHH---h---hCCcEEEEEEeCCCHHHHHHHHHHHHHhCCCeEEEEeCc
Confidence 3789999998 3444444421 1 13578888877432 245677999999 78877643
No 196
>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*
Probab=21.58 E-value=31 Score=30.53 Aligned_cols=25 Identities=32% Similarity=0.469 Sum_probs=19.7
Q ss_pred eeeccCCccEEEEEcCc-chhHHHHH
Q psy13615 4 KTRMVQRKRVAVLISGT-GTNLKSLL 28 (263)
Q Consensus 4 ~~~m~~~~riavl~SG~-Gsnl~al~ 28 (263)
|+.||.|+||+|+..|. |+-+-..+
T Consensus 9 ~~~~m~M~kI~iIG~G~mG~~la~~L 34 (366)
T 1evy_A 9 KDELLYLNKAVVFGSGAFGTALAMVL 34 (366)
T ss_dssp CCCCCCEEEEEEECCSHHHHHHHHHH
T ss_pred hhHhhccCeEEEECCCHHHHHHHHHH
Confidence 67888776999999998 87666555
No 197
>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}
Probab=21.50 E-value=58 Score=28.80 Aligned_cols=15 Identities=13% Similarity=0.120 Sum_probs=12.1
Q ss_pred cCCccEEEEEcCc-ch
Q psy13615 8 VQRKRVAVLISGT-GT 22 (263)
Q Consensus 8 ~~~~riavl~SG~-Gs 22 (263)
|.+.||+++..|. |.
T Consensus 3 M~~~rigiIG~G~~g~ 18 (359)
T 3m2t_A 3 LSLIKVGLVGIGAQMQ 18 (359)
T ss_dssp CCCEEEEEECCSHHHH
T ss_pred CCcceEEEECCCHHHH
Confidence 4567999999998 65
No 198
>3ij5_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; IDP022 hydrolase, lipopolysaccharide biosynthesis, magnesium, STRU genomics; 1.95A {Yersinia pestis}
Probab=21.36 E-value=1.3e+02 Score=24.42 Aligned_cols=44 Identities=11% Similarity=0.033 Sum_probs=30.2
Q ss_pred EEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCHHHHHHHHHHhc
Q psy13615 42 IVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLILSNSLQVMQKVG 87 (263)
Q Consensus 42 iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~~~~~~i~~~l~ 87 (263)
-++|+|+++...+...++++||..++-..+ ++.+....+++.++
T Consensus 94 ~l~I~T~~~~~~~~~~l~~lgi~~~f~~~k--~K~~~l~~~~~~lg 137 (211)
T 3ij5_A 94 DVAIITGRRAKLLEDRANTLGITHLYQGQS--DKLVAYHELLATLQ 137 (211)
T ss_dssp EEEEECSSCCHHHHHHHHHHTCCEEECSCS--SHHHHHHHHHHHHT
T ss_pred EEEEEeCCCHHHHHHHHHHcCCchhhcccC--ChHHHHHHHHHHcC
Confidence 356788888888888999999986665432 23356666666653
No 199
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=20.88 E-value=2.8e+02 Score=23.80 Aligned_cols=50 Identities=10% Similarity=0.070 Sum_probs=30.1
Q ss_pred ccEEEEEcCc-----chhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeC
Q psy13615 11 KRVAVLISGT-----GTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTY 70 (263)
Q Consensus 11 ~riavl~SG~-----Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~ 70 (263)
+||+|.+.|+ |+-++.+.-+ . .+. ++..++.+.+ .. ..++.|.|+..++.
T Consensus 1 mki~ir~Da~~~IG~GHvmRcl~LA--~---~l~-~v~F~~~~~~-~~---~~~~~g~~v~~l~~ 55 (282)
T 3hbm_A 1 MKVLFRSDSSSQIGFGHIKRDLVLA--K---QYS-DVSFACLPLE-GS---LIDEIPYPVYELSS 55 (282)
T ss_dssp CCEEEEECCBTTTBSHHHHHHHHHH--T---TCS-SEEEEECCCT-TC---CGGGCCSCEEECSS
T ss_pred CEEEEEEecCCCccccHHHHHHHHH--H---HHH-hCEEEEecCc-Hh---HHHHCCCeEEEcCc
Confidence 3688888877 8889988732 2 233 5655544332 22 23345888877754
No 200
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=20.71 E-value=2e+02 Score=22.38 Aligned_cols=71 Identities=15% Similarity=0.056 Sum_probs=46.5
Q ss_pred CccEEEEEcCc-----chhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCHHHHHHHHH
Q psy13615 10 RKRVAVLISGT-----GTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLILSNSLQVMQ 84 (263)
Q Consensus 10 ~~riavl~SG~-----Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~~~~~~i~~ 84 (263)
+.|+.+...+. |-|+-+.+ .. . .++++.-.-.|.+....++.|++++..+..++.......+...++++
T Consensus 18 ~~~vlla~~~gd~HdiG~~~va~~--l~-~---~G~eVi~lG~~~p~e~lv~aa~~~~~diV~lS~~~~~~~~~~~~~i~ 91 (161)
T 2yxb_A 18 RYKVLVAKMGLDGHDRGAKVVARA--LR-D---AGFEVVYTGLRQTPEQVAMAAVQEDVDVIGVSILNGAHLHLMKRLMA 91 (161)
T ss_dssp SCEEEEEEESSSSCCHHHHHHHHH--HH-H---TTCEEECCCSBCCHHHHHHHHHHTTCSEEEEEESSSCHHHHHHHHHH
T ss_pred CCEEEEEeCCCCccHHHHHHHHHH--HH-H---CCCEEEECCCCCCHHHHHHHHHhcCCCEEEEEeechhhHHHHHHHHH
Confidence 44555543343 55555544 22 1 14788766677766677889999999988887655444477777788
Q ss_pred Hh
Q psy13615 85 KV 86 (263)
Q Consensus 85 ~l 86 (263)
.+
T Consensus 92 ~L 93 (161)
T 2yxb_A 92 KL 93 (161)
T ss_dssp HH
T ss_pred HH
Confidence 77
No 201
>1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphat; structural genomics, KDO 8-P phosphatase, structure function project, S2F; HET: MES; 1.67A {Haemophilus influenzae RD} SCOP: c.108.1.5 PDB: 1j8d_A*
Probab=20.57 E-value=1.8e+02 Score=22.35 Aligned_cols=43 Identities=14% Similarity=0.026 Sum_probs=29.4
Q ss_pred EEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCHHHHHHHHHHh
Q psy13615 42 IVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLILSNSLQVMQKV 86 (263)
Q Consensus 42 iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~~~~~~i~~~l 86 (263)
-++++||++.......++++|++.++-.. .++.+..+.+++.+
T Consensus 53 ~~~i~Tg~~~~~~~~~~~~lgl~~~~~~~--k~k~~~~~~~~~~~ 95 (180)
T 1k1e_A 53 QVAVLSGRDSPILRRRIADLGIKLFFLGK--LEKETACFDLMKQA 95 (180)
T ss_dssp EEEEEESCCCHHHHHHHHHHTCCEEEESC--SCHHHHHHHHHHHH
T ss_pred eEEEEeCCCcHHHHHHHHHcCCceeecCC--CCcHHHHHHHHHHc
Confidence 35688999888888889999998765322 22335556666655
No 202
>1b0z_A Protein (phosphoglucose isomerase); autocrinefactor, neuroleukin, crystallography motility; 2.30A {Geobacillus stearothermophilus} SCOP: c.80.1.2 PDB: 1c7q_A* 1c7r_A* 2pgi_A
Probab=20.47 E-value=68 Score=29.98 Aligned_cols=59 Identities=19% Similarity=0.144 Sum_probs=37.0
Q ss_pred ccEEEEEcCcchhHHHHHHHhcccc------C--CCCceEEEEEecCCCChhhHHHHHcCCCEEEeeC
Q psy13615 11 KRVAVLISGTGTNLKSLLEATSNRS------D--IMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTY 70 (263)
Q Consensus 11 ~riavl~SG~Gsnl~al~~~~~~~~------~--~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~ 70 (263)
..+.+.+|.+||..+-+..+...+. + .....+++| |+....+=.+.|+++||+++.++.
T Consensus 131 ~TlviviSKSGtT~ET~~~~~~ar~~l~~~~G~~~~~~~~vav-T~~~~g~L~~~a~~~Gi~~F~~~d 197 (445)
T 1b0z_A 131 DLSINVISKSGTTTEPAIAFRIFRDYMEKKYGKEEARKRIYVT-TDRTKGALKKLADQEGYETFVIPD 197 (445)
T ss_dssp CEEEEEECSSSCCHHHHHHHHHHHHHHHHHHCHHHHGGGEEEE-ECSSCSHHHHHHHHHTCEEEECCT
T ss_pred cEEEEEEeCCCCCHHHHHHHHHHHHHHHHhcCchhhcCEEEEE-ecCCcchhHHHHHHhCCeEEeccC
Confidence 3478899999987777653221111 2 111345554 555455656789999999888863
No 203
>2vqe_L 30S ribosomal protein S12, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: i.1.1.1 PDB: 1gix_O* 1hnw_L* 1hnx_L* 1hnz_L* 1hr0_L 1ibk_L* 1ibl_L* 1ibm_L 1j5e_L 1jgo_O* 1jgp_O* 1jgq_O* 1mj1_O* 1ml5_O* 1mvr_O 1n32_L* 1n33_L* 1n34_L 1n36_L 1xmo_L* ...
Probab=20.10 E-value=25 Score=27.64 Aligned_cols=24 Identities=38% Similarity=0.588 Sum_probs=21.3
Q ss_pred eeeeeccCCccEEEEEcCcchhHH
Q psy13615 2 VVKTRMVQRKRVAVLISGTGTNLK 25 (263)
Q Consensus 2 ~~~~~m~~~~riavl~SG~Gsnl~ 25 (263)
++++|..+.++|..++.|.|+|+|
T Consensus 55 ~arVrL~ngk~VtAyIPG~Ghnlq 78 (135)
T 2vqe_L 55 VAKVRLTSGYEVTAYIPGEGHNLQ 78 (135)
T ss_dssp CCEEEETTSCEEEEECCSSCCCCC
T ss_pred EEEEEcCCCCEEEEEcCCCCCccC
Confidence 568899999999999999998777
Done!