RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13615
(263 letters)
>2v9y_A Phosphoribosylformylglycinamidine cyclo-ligase; multifunctional
enzyme, structural genomics consortium,
nucleotide-binding, purine biosynthesis; 2.10A {Homo
sapiens}
Length = 334
Score = 128 bits (325), Expect = 1e-35
Identities = 38/60 (63%), Positives = 49/60 (81%)
Query: 100 GGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKDVAAGDVVIALPSSGIHSNGFSLV 159
GGETAE+P +Y PG+YDLAGFAVGA+E+ LP ++ + GDVV+ + SSG+HSNGFSLV
Sbjct: 108 GGETAEMPDMYPPGEYDLAGFAVGAMERDQKLPHLERITEGDVVVGIASSGLHSNGFSLV 167
>2btu_A Phosphoribosyl-aminoimidazole synthetase; synthase, PURM, de novo
purine biosynthesis, AIR synthase family, spine, FGAR
amidotransferase; 2.31A {Bacillus anthracis}
Length = 346
Score = 124 bits (314), Expect = 6e-34
Identities = 35/60 (58%), Positives = 45/60 (75%), Gaps = 1/60 (1%)
Query: 100 GGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKDVAAGDVVIALPSSGIHSNGFSLV 159
GGETAE+PG+Y +YDLAGF VG V+K ++ + + AG V+I L SSGIHSNG+SLV
Sbjct: 136 GGETAEMPGMYSTEEYDLAGFTVGIVDKKKIVTG-EKIEAGHVLIGLASSGIHSNGYSLV 194
>3p4e_A Phosphoribosylformylglycinamidine cyclo-ligase; structural
genomics, center for structural genomics of infec
diseases, csgid; HET: AMP CIT; 1.77A {Vibrio cholerae}
PDB: 1cli_A
Length = 349
Score = 124 bits (313), Expect = 9e-34
Identities = 35/60 (58%), Positives = 44/60 (73%), Gaps = 1/60 (1%)
Query: 100 GGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKDVAAGDVVIALPSSGIHSNGFSLV 159
GGETAE+PG+Y+ DYD+AGF VG VEK ++ V GD +IA+ SSG HSNG+SLV
Sbjct: 143 GGETAEMPGMYEGEDYDVAGFCVGVVEKEEIIDG-SKVQVGDALIAVGSSGPHSNGYSLV 201
>3m84_A Phosphoribosylformylglycinamidine cyclo-ligase; alpha-beta fold,
csgid, ATP-binding, nucleotide-BIND purine biosynthesis;
HET: MSE AMP TRS; 1.70A {Francisella tularensis subsp}
PDB: 3qty_A*
Length = 350
Score = 124 bits (313), Expect = 9e-34
Identities = 26/60 (43%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
Query: 100 GGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKDVAAGDVVIALPSSGIHSNGFSLV 159
GGETAE+PG+YQ G+ D+ G G V++ ++ +++ GD+V L SSG+H+NG+S
Sbjct: 142 GGETAEMPGVYQAGEIDMVGVITGIVDRKRIING-ENIKEGDIVFGLSSSGLHTNGYSFA 200
>2z01_A Phosphoribosylformylglycinamidine cyclo-ligase; alpha and beta
proteins, cytoplasm, purine biosynthesis, structural
genomics, NPPSFA; 2.20A {Geobacillus kaustophilus}
Length = 348
Score = 123 bits (311), Expect = 2e-33
Identities = 36/60 (60%), Positives = 46/60 (76%), Gaps = 1/60 (1%)
Query: 100 GGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKDVAAGDVVIALPSSGIHSNGFSLV 159
GGETAE+PG+Y +YDLAGFAVG EK L+ + + AGD ++ LPSSG+HSNG+SLV
Sbjct: 138 GGETAEMPGMYDEDEYDLAGFAVGVAEKERLITG-ETIQAGDALVGLPSSGLHSNGYSLV 196
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine
synthesis, enzyme, protein-ATP complex, structural GE
structural genomics consortium, SGC; HET: ATP; 2.45A
{Homo sapiens}
Length = 452
Score = 121 bits (306), Expect = 4e-32
Identities = 41/72 (56%), Positives = 48/72 (66%)
Query: 159 VLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVI 218
LCFTDGKTV MPP+QDHKR D GPNTGGMGAYCP ++ +I DT+L R +
Sbjct: 222 CLCFTDGKTVAPMPPAQDHKRLLEGDGGPNTGGMGAYCPAPQVSNDLLLKIKDTVLQRTV 281
Query: 219 KKMIAEGTPFVG 230
M EGTP+ G
Sbjct: 282 DGMQQEGTPYTG 293
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal
binding; HET: ANP; 2.10A {Bacillus subtilis} PDB:
2xd4_A*
Length = 422
Score = 117 bits (295), Expect = 1e-30
Identities = 31/72 (43%), Positives = 43/72 (59%)
Query: 159 VLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVI 218
++ F G+ V M +QDHKR ++ DKGPNTGGMGAY P ++E + +TI+
Sbjct: 195 LMAFVKGEKVYPMVIAQDHKRAFDGDKGPNTGGMGAYSPVPQISEETVRHAVETIVKPAA 254
Query: 219 KKMIAEGTPFVG 230
K M+ EG F G
Sbjct: 255 KAMVQEGRSFTG 266
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide
synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus
kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A
Length = 451
Score = 117 bits (295), Expect = 1e-30
Identities = 30/72 (41%), Positives = 43/72 (59%)
Query: 159 VLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVI 218
+ F +G+ V + +QDHKR Y+ D+GPNTGGMGAY P +++ + IL
Sbjct: 216 FMAFVNGEKVYPLAIAQDHKRAYDGDEGPNTGGMGAYSPVPQISDEMMDAALEAILRPAA 275
Query: 219 KKMIAEGTPFVG 230
K + AEG PF+G
Sbjct: 276 KALAAEGRPFLG 287
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide
synthetase, GAR synthetase, ATP B purine nucleotide
biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus}
PDB: 2yya_A
Length = 424
Score = 116 bits (294), Expect = 2e-30
Identities = 32/72 (44%), Positives = 43/72 (59%)
Query: 159 VLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVI 218
+ +G +P SQDHKR + DKGPNTGGMGAY P ++ E +K I + I+ RVI
Sbjct: 195 YIVMINGDRYVPLPTSQDHKRLLDEDKGPNTGGMGAYSPTPVINEEVEKRIREEIVERVI 254
Query: 219 KKMIAEGTPFVG 230
K + EG + G
Sbjct: 255 KGLKEEGIYYRG 266
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN
structural genomics of infectious diseases, csgid; HET:
MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Length = 431
Score = 116 bits (294), Expect = 2e-30
Identities = 29/72 (40%), Positives = 42/72 (58%)
Query: 159 VLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVI 218
+ DG+ V M SQDHKR + D GPNTGGMGAY P ++T+ + + D ++ +
Sbjct: 200 FIVMVDGENVLPMATSQDHKRVGDGDTGPNTGGMGAYSPAPVVTDDVHQRVMDQVIWPTV 259
Query: 219 KKMIAEGTPFVG 230
+ M AEG + G
Sbjct: 260 RGMAAEGNIYTG 271
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW,
emerald biostructures, ALS collaborative
crystallography; 2.15A {Ehrlichia chaffeensis}
Length = 442
Score = 114 bits (288), Expect = 1e-29
Identities = 25/72 (34%), Positives = 37/72 (51%)
Query: 159 VLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVI 218
DG ++ +QD+K +N+KGPNTGGMG+Y +I+T+ + I I+ I
Sbjct: 216 FFTLVDGSNPVILGVAQDYKTIGDNNKGPNTGGMGSYSKPNIITQEMEHIIIQKIIYPTI 275
Query: 219 KKMIAEGTPFVG 230
K M F G
Sbjct: 276 KAMFNMNIQFRG 287
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine
nucleotid structural genomics, NPPSFA; 2.80A {Thermus
thermophilus}
Length = 417
Score = 112 bits (283), Expect = 5e-29
Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 159 VLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVI 218
VL TDG+T+ + PSQDHKR + D+GP TGGMGA P + + + + IL ++
Sbjct: 190 VLALTDGETILPLLPSQDHKRLLDGDQGPMTGGMGAVAPYPMDEATL-RRVEEEILGPLV 248
Query: 219 KKMIAEGTPFVG 230
+ + AEG + G
Sbjct: 249 RGLRAEGVVYRG 260
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG,
protein structure initiative, PSI, joint center for S
genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1
c.30.1.1 d.142.1.2
Length = 412
Score = 109 bits (275), Expect = 7e-28
Identities = 21/72 (29%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 159 VLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVI 218
+ +G+ ++P +D+KR + D+GPNTGGMG++ P +I ++ KK + + + +
Sbjct: 199 AMAVVNGRNFVILPFVRDYKRLMDGDRGPNTGGMGSWGPVEIPSDTIKKI--EELFDKTL 256
Query: 219 KKMIAEGTPFVG 230
+ EG + G
Sbjct: 257 WGVEKEGYAYRG 268
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 1.85A {Brucella melitensis BV}
Length = 209
Score = 82.5 bits (205), Expect = 2e-19
Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 8 VQRKRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKV 67
++R RV + ISG G+N+++L+ A ++ AEIV V S+K GL A AGI T+V
Sbjct: 5 MKRNRVVIFISGGGSNMEALIRAA--QAPGFPAEIVAVFSDKAEAGGLAKAEAAGIATQV 62
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics,
niaid, seattle structural center for infectious
disease, ssgcid; 2.20A {Anaplasma phagocytophilum}
Length = 215
Score = 81.8 bits (203), Expect = 5e-19
Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 7 MVQRKRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTK 66
M + RV VLISG G+NL++L +A ++ I V+SN GL IA++ GIPT
Sbjct: 5 MKKELRVGVLISGRGSNLEALAKAF--STEESSVVISCVISNNAEARGLLIAQSYGIPTF 62
Query: 67 VSTYK 71
V K
Sbjct: 63 VVKRK 67
>3kiz_A Phosphoribosylformylglycinamidine cyclo-ligase; STR genomics, joint
center for structural genomics, JCSG; 1.50A {Cytophaga
hutchinsonii atcc 33406}
Length = 394
Score = 84.0 bits (208), Expect = 7e-19
Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 14/71 (19%)
Query: 100 GGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKDVAAGDVVIALPS----------- 148
GGETA++ L + D +++ ++ +++ AG+V++ S
Sbjct: 146 GGETADVGDLVRTIIVDSTV--TCRMKRQDVISN-ENIKAGNVIVGFASYGQTSYETEYN 202
Query: 149 SGIHSNGFSLV 159
G+ SNG +
Sbjct: 203 GGMGSNGLTSA 213
>1meo_A Phosophoribosylglycinamide formyltransferase; purine
biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB:
1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A*
1zly_A* 1zlx_A* 1mej_B 1men_A*
Length = 209
Score = 81.0 bits (201), Expect = 1e-18
Identities = 31/56 (55%), Positives = 42/56 (75%), Gaps = 2/56 (3%)
Query: 12 RVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKV 67
RVAVLISGTG+NL++L+++T R A+I +V+SNK V GL+ A AGIPT+V
Sbjct: 2 RVAVLISGTGSNLQALIDST--REPNSSAQIDIVISNKAAVAGLDKAERAGIPTRV 55
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines,
pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A
{Coxiella burnetii}
Length = 215
Score = 81.0 bits (201), Expect = 1e-18
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 7 MVQRK-RVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPT 65
M + + VLISG GTNL++++ A EI V+SN+ + GL A+ A IPT
Sbjct: 1 MNREPLPIVVLISGNGTNLQAIIGAIQKGLA---IEIRAVISNRADAYGLKRAQQADIPT 57
Query: 66 KV 67
+
Sbjct: 58 HI 59
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics,
PSI-biology, protein STRU initiative; 1.90A {Bacillus
halodurans}
Length = 211
Score = 80.6 bits (200), Expect = 1e-18
Identities = 15/61 (24%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 11 KRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTY 70
KRVA+ SG+GTN ++++++ ++ + E+ L++++K + + + IP
Sbjct: 3 KRVAIFASGSGTNAEAIIQSQ--KAGQLPCEVALLITDKPGAKVVERVKVHEIPVCALDP 60
Query: 71 K 71
K
Sbjct: 61 K 61
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold,
structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Length = 216
Score = 79.9 bits (198), Expect = 2e-18
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 11 KRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKV 67
++ VL+SG G+NL+++++A S + A I LV+S+ + + + KV
Sbjct: 2 LKIGVLVSGRGSNLQAIIDAI--ESGKVNASIELVISDNPKAYAIERCKKHNVECKV 56
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics,
riken structural genomics/proteomics in RSGI, rossmann
fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Length = 212
Score = 79.5 bits (197), Expect = 3e-18
Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 11 KRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTY 70
KR+AV SG+GTN +++++A + + A + L+V ++ + + A +P V +
Sbjct: 4 KRLAVFASGSGTNFQAIVDAA--KRGDLPARVALLVCDRPGAKVIERAARENVPAFVFSP 61
Query: 71 K 71
K
Sbjct: 62 K 62
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine
biosynthesis, anti-cancer agent; HET: 138; 1.60A
{Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A*
1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Length = 212
Score = 79.5 bits (197), Expect = 4e-18
Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 12 RVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKV 67
+ VLISG G+NL+++++A +++ ++ + V SNK + GL AR AGI T
Sbjct: 2 NIVVLISGNGSNLQAIIDAC--KTNKIKGTVRAVFSNKADAFGLERARQAGIATHT 55
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics,
riken structural genomics/proteomics in RSGI, rossmann
fold; 2.07A {Symbiobacterium toebii}
Length = 229
Score = 79.5 bits (197), Expect = 5e-18
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 1 MVVKTRMVQRKRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARN 60
+ + M R+ VLISG+GTNL+++L+ R + + +V+S++ + GL AR
Sbjct: 16 LYFQGHM---IRIGVLISGSGTNLQAILDGC--REGRIPGRVAVVISDRADAYGLERARR 70
Query: 61 AGIPTKV 67
AG+
Sbjct: 71 AGVDALH 77
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN;
glycinamide ribonucleotide transformylase, structure;
1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Length = 215
Score = 76.4 bits (189), Expect = 5e-17
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 9 QRKRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKV 67
R+ VL SGTG+ L+SLL+A A +V V ++ IA A +P
Sbjct: 11 APARLVVLASGTGSLLRSLLDAAVGDYP---ARVVAVGVDR-ECRAAEIAAEASVPVFT 65
>3mdo_A Putative phosphoribosylformylglycinamidine cyclo-; structural
genomics, joint center for structural genomics; HET: MSE
PGE P6G PG4; 1.91A {Parabacteroides distasonis}
Length = 389
Score = 77.4 bits (191), Expect = 1e-16
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 14/71 (19%)
Query: 100 GGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKDVAAGDVVIALPSSG--------- 150
GGETA++ L + D ++++ ++ K++ GDV++ L SSG
Sbjct: 145 GGETADVGDLVRTIIVDSTV--TCRMKRSDVIDN-KNIQGGDVIVGLASSGQATYEKEYN 201
Query: 151 --IHSNGFSLV 159
+ SNG +
Sbjct: 202 GGMGSNGLTSA 212
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
ligase; 2.61A {Anaerococcus prevotii}
Length = 403
Score = 51.2 bits (123), Expect = 1e-07
Identities = 11/85 (12%), Positives = 24/85 (28%), Gaps = 19/85 (22%)
Query: 159 VLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVI 218
F V + P D +G Y P D + + ++ + + I
Sbjct: 198 AQAFVYKNDVLFVMPHGDETYM-----SHTAVPVGHYVPLD-VKDDIIEKTKTEVK-KAI 250
Query: 219 KK------------MIAEGTPFVGE 231
K ++ + ++ E
Sbjct: 251 KALGLNNCAVNVDMILKDNEVYIIE 275
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 45.6 bits (107), Expect = 1e-05
Identities = 43/273 (15%), Positives = 78/273 (28%), Gaps = 86/273 (31%)
Query: 7 MVQRKRVAVLISGTGTNLKSLLEATSN---RSDIMRAEIVLVVSNKHNVEGLNIARNAGI 63
M+Q+ L+ N S + +SN R ++AE+ ++ +K L + N
Sbjct: 201 MLQK-----LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN--- 252
Query: 64 PTKVSTYKH---------TLILSNSLQVMQKVGAKYSDIAPFSQDGGETAELPGLYQPGD 114
V K L+ + QV + A + S D L
Sbjct: 253 ---VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATT--THISLDH----HSMTLTPD-- 301
Query: 115 YDLAGFAVGAVEKASLLPKVKDVAAGDVVIALPSSGIHSNGFSLVLCFTDGKTVKVMPPS 174
E SLL K D D LP + +N L + ++++ +
Sbjct: 302 -----------EVKSLLLKYLDCRPQD----LPREVLTTNPRRLSII---AESIRDGLAT 343
Query: 175 QDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKR 234
D+ + N DK L +I+ + P E ++
Sbjct: 344 WDNWKHVNCDK----------------------------LTTIIESSLNVLEP--AEYRK 373
Query: 235 G------FTEGT-VTAKVFSSRNRREKEDNPEE 260
F + + S + +
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMV 406
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain,
structural genomics, joint center for structural
genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Length = 287
Score = 38.4 bits (90), Expect = 0.001
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 9 QRKRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIP 64
RK+V +++S L LL +R + E+V ++SN H E L+++ IP
Sbjct: 87 DRKKVVIMVSKFDHCLGDLLYR--HRLGELDMEVVGIISN-HPREALSVSLVGDIP 139
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint
center for structural genomics, J protein structure
initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Length = 302
Score = 35.3 bits (82), Expect = 0.016
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 9 QRKRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIP 64
Q+KRV ++ S L LL SD + +I V+SN ++ + IP
Sbjct: 104 QKKRVVLMASRESHCLADLLHR--WHSDELDCDIACVISNHQDLRSM--VEWHDIP 155
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain,
structural genomics, joint C structural genomics, JCSG;
HET: MSE; 2.25A {Pseudomonas putida}
Length = 286
Score = 34.9 bits (81), Expect = 0.016
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 9 QRKRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIP 64
R +V +++S L LL R + ++V VVSN ++E L A IP
Sbjct: 89 HRPKVVIMVSKADHCLNDLLYR--QRIGQLGMDVVAVVSNHPDLEPL--AHWHKIP 140
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for
structural genomics, JCSG, protein structure initiative
hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Length = 292
Score = 34.9 bits (81), Expect = 0.020
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 9 QRKRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIP 64
R +V +++S L LL + ++ +IV +VSN + L A G+P
Sbjct: 94 ARPKVLIMVSKLEHCLADLLFR--WKMGELKMDIVGIVSNHPDFAPL--AAQHGLP 145
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint
center for structural genomics, J protein structure
initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Length = 288
Score = 34.5 bits (80), Expect = 0.024
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Query: 9 QRKRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIP 64
R++V +L+S + L +L R + +VSN H E + IP
Sbjct: 88 TRRKVMLLVSQSDHCLADILYR--WRVGDLHMIPTAIVSN-HPRETFSGFDFGDIP 140
>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate
aldolase; sequestered tunnel, substrate channeling;
HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1
Length = 312
Score = 29.9 bits (67), Expect = 0.73
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 7 MVQRKRVAVLISG-TGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPT 65
M Q+ +VA++ SG GT L+ + + E+ +V +GL A+ G+ T
Sbjct: 1 MNQKLKVAIIGSGNIGT---DLMIKVLRNAKYL--EMGAMVGIDAASDGLARAQRMGVTT 55
>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase;
2.10A {Homo sapiens}
Length = 349
Score = 26.8 bits (60), Expect = 7.4
Identities = 13/46 (28%), Positives = 16/46 (34%), Gaps = 5/46 (10%)
Query: 108 GLYQ--PGDYDLAGF-AVGAVEKASLLPKVKDVAAGDVVIALPSSG 150
G P + GF G VE VK GD V+A +
Sbjct: 52 GNIDNPPKTPLVPGFECSGIVEALG--DSVKGYEIGDRVMAFVNYN 95
>3tjo_A Serine protease HTRA1; peptidase, hydrolase; HET: BOG; 2.30A {Homo
sapiens} PDB: 3tjn_A 3nwu_A
Length = 231
Score = 26.5 bits (59), Expect = 8.5
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 7/41 (17%)
Query: 222 IAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGD 262
+A G+PF + TVT + S+ R KE D
Sbjct: 141 VAIGSPF------SL-QNTVTTGIVSTTQRGGKELGLRNSD 174
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB:
3nzi_A 3nwu_A 2ytw_A 2joa_A
Length = 332
Score = 26.5 bits (59), Expect = 9.6
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 7/41 (17%)
Query: 222 IAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGD 262
+A G+PF + TVT + S+ R KE D
Sbjct: 124 VAIGSPF------SL-QNTVTTGIVSTTQRGGKELGLRNSD 157
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.132 0.372
Gapped
Lambda K H
0.267 0.0724 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,912,312
Number of extensions: 238810
Number of successful extensions: 440
Number of sequences better than 10.0: 1
Number of HSP's gapped: 418
Number of HSP's successfully gapped: 48
Length of query: 263
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 171
Effective length of database: 4,133,061
Effective search space: 706753431
Effective search space used: 706753431
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (25.4 bits)