RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13615
         (263 letters)



>d1clia1 d.79.4.1 (A:5-170) Aminoimidazole ribonucleotide synthetase
           (PurM) N-terminal domain {Escherichia coli [TaxId: 562]}
          Length = 166

 Score = 61.5 bits (149), Expect = 2e-12
 Identities = 34/122 (27%), Positives = 54/122 (44%), Gaps = 14/122 (11%)

Query: 13  VAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNK---HNVEGLNIARNAGIPTKVST 69
           +     G GT L+  ++    R D +  ++V +  N       E L          K+  
Sbjct: 56  LVSGTDGVGTKLRLAMD--LKRHDTIGIDLVAMCVNDLVVQGAEPLFFLDYYATG-KLDV 112

Query: 70  YKHTLILSNSLQVMQKVGAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAVEKAS 129
              + ++S          A+    +  S  GGETAE+PG+Y   DYD+AGF VG VEK+ 
Sbjct: 113 DTASAVISGI--------AEGCLQSGCSLVGGETAEMPGMYHGEDYDVAGFCVGVVEKSE 164

Query: 130 LL 131
           ++
Sbjct: 165 II 166


>d1meoa_ c.65.1.1 (A:) Glycinamide ribonucleotide transformylase,
          GART {Human (Homo sapiens) [TaxId: 9606]}
          Length = 205

 Score = 54.1 bits (129), Expect = 2e-09
 Identities = 32/61 (52%), Positives = 44/61 (72%), Gaps = 2/61 (3%)

Query: 12 RVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYK 71
          RVAVLISGTG+NL++L+++T  R     A+I +V+SNK  V GL+ A  AGIPT+V  +K
Sbjct: 2  RVAVLISGTGSNLQALIDST--REPNSSAQIDIVISNKAAVAGLDKAERAGIPTRVINHK 59

Query: 72 H 72
           
Sbjct: 60 L 60


>d1jkxa_ c.65.1.1 (A:) Glycinamide ribonucleotide transformylase,
          GART {Escherichia coli [TaxId: 562]}
          Length = 209

 Score = 53.7 bits (128), Expect = 2e-09
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 2/61 (3%)

Query: 12 RVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYK 71
           + VLISG G+NL+++++A   +++ ++  +  V SNK +  GL  AR AGI T      
Sbjct: 2  NIVVLISGNGSNLQAIIDAC--KTNKIKGTVRAVFSNKADAFGLERARQAGIATHTLIAS 59

Query: 72 H 72
           
Sbjct: 60 A 60


>d1clia2 d.139.1.1 (A:171-345) Aminoimidazole ribonucleotide
           synthetase (PurM) C-terminal domain {Escherichia coli
           [TaxId: 562]}
          Length = 175

 Score = 52.8 bits (126), Expect = 3e-09
 Identities = 28/115 (24%), Positives = 42/115 (36%), Gaps = 24/115 (20%)

Query: 135 KDVAAGDVVIALPSSGIHSNGFSLV------------LCFTDGKTVK----------VMP 172
             V+ GDV+IAL SSG HSNG+SLV                DGK +           V  
Sbjct: 3   SKVSDGDVLIALGSSGPHSNGYSLVRKILEVSGCDPQTTELDGKPLADHLLAPTRIYVKS 62

Query: 173 PSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILM--RVIKKMIAEG 225
             +  ++   +     TGG        +L +  +  I ++      V   +   G
Sbjct: 63  VLELIEKVDVHAIAHLTGGGFWENIPRVLPDNTQAVIDESSWQWPEVFNWLQTAG 117


>d1lmla_ d.92.1.3 (A:) Leishmanolysin {Leishmania major [TaxId:
           5664]}
          Length = 475

 Score = 28.2 bits (62), Expect = 1.3
 Identities = 7/31 (22%), Positives = 15/31 (48%), Gaps = 3/31 (9%)

Query: 192 MGAYCPC---DILTEAQKKEIHDTILMRVIK 219
            GA   C   DILT  ++  +   ++ + ++
Sbjct: 37  AGAIVTCTAEDILTNEKRDILVKHLIPQAVQ 67


>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit,
          IlvH {Escherichia coli [TaxId: 562]}
          Length = 76

 Score = 25.4 bits (56), Expect = 2.5
 Identities = 13/38 (34%), Positives = 18/38 (47%)

Query: 12 RVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNK 49
          RV  L S  G N++SL  A ++   + R  I  V   K
Sbjct: 17 RVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEK 54


>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit,
          IlvH {Nitrosomonas europaea [TaxId: 915]}
          Length = 77

 Score = 24.6 bits (54), Expect = 4.5
 Identities = 12/38 (31%), Positives = 19/38 (50%)

Query: 12 RVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNK 49
          RVA L S  G N++SL  A +    + R  +V    ++
Sbjct: 18 RVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPDE 55


>d1e5xa_ c.79.1.1 (A:) Threonine synthase {Mouse-ear cress
           (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 477

 Score = 25.7 bits (55), Expect = 7.0
 Identities = 9/77 (11%), Positives = 23/77 (29%)

Query: 123 GAVEKASLLPKVKDVAAGDVVIALPSSGIHSNGFSLVLCFTDGKTVKVMPPSQDHKRKYN 182
           G     S + +++ +    V +   S+G  S   S         ++  +P ++    +  
Sbjct: 157 GMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISMAQLV 216

Query: 183 NDKGPNTGGMGAYCPCD 199
                    +      D
Sbjct: 217 QPIANGAFVLSIDTDFD 233


>d2f0xa1 d.38.1.5 (A:3-138) Hypothetical protein Them2 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 136

 Score = 24.6 bits (53), Expect = 8.6
 Identities = 16/111 (14%), Positives = 31/111 (27%), Gaps = 10/111 (9%)

Query: 152 HSNGFSLVLCF------TDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQ 205
            +  F  VL          GK +  M   ++H        G  T  +        L   +
Sbjct: 15  KARNFERVLGKITLVSAAPGKVICEMKVEEEHTNAIGTLHGGLTATLVDNISTMALLCTE 74

Query: 206 KKEIHDTILMRV-IKKMIAEGTPFVGE---KKRGFTEGTVTAKVFSSRNRR 252
           +     ++ M +        G   V      K+G T    +  + +    +
Sbjct: 75  RGAPGVSVDMNITYMSPAKLGEDIVITAHVLKQGKTLAFTSVDLTNKATGK 125


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.132    0.372 

Gapped
Lambda     K      H
   0.267   0.0726    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 914,837
Number of extensions: 40846
Number of successful extensions: 82
Number of sequences better than 10.0: 1
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 10
Length of query: 263
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 179
Effective length of database: 1,254,276
Effective search space: 224515404
Effective search space used: 224515404
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (23.8 bits)