BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13622
(143 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IQJ|A Chain A, Crystal Structure Of The Gap Domain Of Smap1l (Loc64744)
Stromal Membrane-Associated Protein 1-Like
pdb|2IQJ|B Chain B, Crystal Structure Of The Gap Domain Of Smap1l (Loc64744)
Stromal Membrane-Associated Protein 1-Like
Length = 134
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 52/100 (52%), Gaps = 6/100 (6%)
Query: 8 PKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSLWEH 67
P+W N GV +C C IHR+LG HIS+VK + W + + + NG A L+E
Sbjct: 38 PRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCMQEMGNGKANRLYEA 97
Query: 68 SLCESKTKKKPVPSDPLHPTKAEFIKAKYEQLSFMIRSND 107
L E T ++P + P FI+ KYE+ +M RS D
Sbjct: 98 YLPE--TFRRP----QIDPAVEGFIRDKYEKKKYMDRSLD 131
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 54/101 (53%), Gaps = 2/101 (1%)
Query: 4 RAADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPS 63
R P+W +N GV +C C IHRSLG H S+V+ L +W P L+ ++ L N
Sbjct: 52 REPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCELGNVIINQ 111
Query: 64 LWEHSLCESKTKKKPVPSDPLHPTKAEFIKAKYEQLSFMIR 104
++E + E+ KKP PS +A +I AKY + F+ +
Sbjct: 112 IYE-ARVEAMAVKKPGPSCSRQEKEA-WIHAKYVEKKFLTK 150
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 54/101 (53%), Gaps = 2/101 (1%)
Query: 4 RAADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPS 63
R P+W +N GV +C C IHRSLG H S+V+ L +W P L+ ++ L N
Sbjct: 52 REPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCELGNVIINQ 111
Query: 64 LWEHSLCESKTKKKPVPSDPLHPTKAEFIKAKYEQLSFMIR 104
++E + E+ KKP PS +A +I AKY + F+ +
Sbjct: 112 IYEARV-EAMAVKKPGPSCSRQEKEA-WIHAKYVEKKFLTK 150
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 54/101 (53%), Gaps = 2/101 (1%)
Query: 4 RAADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPS 63
R P+W +N GV +C C IHRSLG H S+V+ L +W P L+ ++ L N
Sbjct: 52 REPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCELGNVIINQ 111
Query: 64 LWEHSLCESKTKKKPVPSDPLHPTKAEFIKAKYEQLSFMIR 104
++E + E+ KKP PS +A +I AKY + F+ +
Sbjct: 112 IYEARV-EAMAVKKPGPSCSRQEKEA-WIHAKYVEKKFLTK 150
>pdb|2CRR|A Chain A, Solution Structure Of Arfgap Domain From Human Smap1
Length = 141
Score = 52.8 bits (125), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 36/68 (52%)
Query: 5 AADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSL 64
A P+W N GV +C C IHR+LG HIS+VK + W + + + N A L
Sbjct: 37 AKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTAEQIQCMQDMGNTKARLL 96
Query: 65 WEHSLCES 72
+E +L E+
Sbjct: 97 YEANLPEN 104
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 52.4 bits (124), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 4/134 (2%)
Query: 5 AADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSL 64
A DP W N G+L C C IHR LG H S+++ L S L + + N G +
Sbjct: 25 APDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKNIGNAGFNEI 84
Query: 65 WEHSLCESKTKKKPVPSDPLHPTKAEFIKAKYEQLSFMIRSN-DTQEELNQQLHSSVRTS 123
E L S+ KP P + K ++I AKY + + + + DT +L L +V+T
Sbjct: 85 MECCL-PSEDPVKPNPGSDMIARK-DYITAKYMERRYARKKHADTAAKL-HSLCEAVKTR 141
Query: 124 NLDTSLRLLSQGAD 137
++ L+ + G D
Sbjct: 142 DIFGLLQAYADGVD 155
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 60/133 (45%), Gaps = 6/133 (4%)
Query: 5 AADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSL 64
AADP W N GVL C C +HR LG S+++ L PS L + + + N +
Sbjct: 31 AADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNMGNTSFNEV 90
Query: 65 WEHSLCESKTKKKPVPSDPLHPTKAEFIKAKYEQLSFMIRSNDTQEELNQQLHSSVRTSN 124
E L K SD T+ ++I AKY + F R T E Q+L +++ +
Sbjct: 91 MEAQLPSHGGPKPSAESD--MGTRRDYIMAKYVEHRFARRC--TPEP--QRLWTAICNRD 144
Query: 125 LDTSLRLLSQGAD 137
L + L + G D
Sbjct: 145 LLSVLEAFANGQD 157
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 60/133 (45%), Gaps = 6/133 (4%)
Query: 5 AADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSL 64
AADP W N GVL C C +HR LG S+++ L PS L + + + N +
Sbjct: 50 AADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNMGNTSFNEV 109
Query: 65 WEHSLCESKTKKKPVPSDPLHPTKAEFIKAKYEQLSFMIRSNDTQEELNQQLHSSVRTSN 124
E L K SD T+ ++I AKY + F R T E Q+L +++ +
Sbjct: 110 MEAQLPSHGGPKPSAESD--MGTRRDYIMAKYVEHRFARRC--TPEP--QRLWTAICNRD 163
Query: 125 LDTSLRLLSQGAD 137
L + L + G D
Sbjct: 164 LLSVLEAFANGQD 176
>pdb|3FEH|A Chain A, Crystal Structure Of Full Length Centaurin Alpha-1
pdb|3LJU|X Chain X, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Head Group Of Pip3
Length = 386
Score = 49.7 bits (117), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 4/98 (4%)
Query: 5 AADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSL 64
A DP W GV +C +C IHR++ + +S+VK + W + + + + N A +
Sbjct: 42 APDPDWASYTLGVFICLSCSGIHRNIPQ-VSKVKSVRLDAWEEAQVEFMASHGNDAARAR 100
Query: 65 WEHSLCESKTKKKPVPSDPLHPTKAEFIKAKYEQLSFM 102
+E + +P PSD + ++I+AKYE+ F+
Sbjct: 101 FESKV--PSFYYRPTPSD-CQLLREQWIRAKYERQEFI 135
>pdb|3FM8|C Chain C, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Fha Domain Of Kif13b (Capri Target)
pdb|3FM8|D Chain D, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Fha Domain Of Kif13b (Capri Target)
pdb|3MDB|C Chain C, Crystal Structure Of The Ternary Complex Of Full Length
Centaurin Alpha-1, Kif13b Fha Domain, And Ip4
pdb|3MDB|D Chain D, Crystal Structure Of The Ternary Complex Of Full Length
Centaurin Alpha-1, Kif13b Fha Domain, And Ip4
Length = 392
Score = 49.3 bits (116), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 4/98 (4%)
Query: 5 AADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSL 64
A DP W GV +C +C IHR++ + +S+VK + W + + + + N A +
Sbjct: 44 APDPDWASYTLGVFICLSCSGIHRNIPQ-VSKVKSVRLDAWEEAQVEFMASHGNDAARAR 102
Query: 65 WEHSLCESKTKKKPVPSDPLHPTKAEFIKAKYEQLSFM 102
+E + +P PSD + ++I+AKYE+ F+
Sbjct: 103 FESKV--PSFYYRPTPSD-CQLLREQWIRAKYERQEFI 137
>pdb|2P57|A Chain A, Gap Domain Of Znf289, An Id1-Regulated Zinc Finger Protein
Length = 144
Score = 42.7 bits (99), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 6/97 (6%)
Query: 5 AADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLE-PSTWPPSLLSMLMTLTNGGAPS 63
A +P W + GV +C C +HRSLG H+S ++ E S W L + N A +
Sbjct: 45 AKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNWNWFQLRCMQVGGNANATA 104
Query: 64 LWEHSLCESKTKKKPVPSDPLHPTKAEFIKAKYEQLS 100
+ C + S A+ + K QL
Sbjct: 105 FFRQHGCTANDANTKYNSRA-----AQMYREKIRQLG 136
>pdb|2CRW|A Chain A, Solution Structure Of The Arfgap Domain Of
Adp-Ribosylation Factor Gtpaseactivating Protein 3
(Arfgap 3)
Length = 149
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Query: 5 AADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLE-PSTWPPSLLSMLMTLTNGGAPS 63
A +P W + GV +C C HRSLG H+S ++ E S W L + N A S
Sbjct: 37 AKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCMQVGGNASASS 96
Query: 64 LWEHSLCES 72
+ C +
Sbjct: 97 FFHQHGCST 105
>pdb|3SUB|A Chain A, Crystal Structure Of The Catalytic Domain Of Plasmodium
Falciparum Arf Gtpase Activating Protein
pdb|3SUB|B Chain B, Crystal Structure Of The Catalytic Domain Of Plasmodium
Falciparum Arf Gtpase Activating Protein
Length = 163
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 6 ADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSML 53
++P W +N G+ +C C +HRSLG HIS V+ ++ + L +
Sbjct: 31 SNPDWVSVNHGIFLCINCSGVHRSLGVHISIVRSIKMDIFTDEQLKYI 78
>pdb|2OWA|A Chain A, Crystal Structure Of Putative Gtpase Activating Protein
For Adp Ribosylation Factor From Cryptosporidium Parvum
(Cgd5_1040)
pdb|2OWA|B Chain B, Crystal Structure Of Putative Gtpase Activating Protein
For Adp Ribosylation Factor From Cryptosporidium Parvum
(Cgd5_1040)
Length = 138
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%)
Query: 7 DPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSLWE 66
+P W L+ V +C C S HR +G HIS V+ + + P L + NG A + ++
Sbjct: 46 NPTWLSLSFAVFICLNCSSDHRKMGVHISFVRSSDLDKFTPIQLVRMDIGGNGRARNYFK 105
Query: 67 HSL 69
L
Sbjct: 106 QVL 108
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 5 AADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTW 45
A +P+W + G+ +C C HR LG H+S V+ + W
Sbjct: 45 AFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKW 85
>pdb|3DWD|A Chain A, Crystal Structure Of The Arfgap Domain Of Human Arfgap1
pdb|3DWD|B Chain B, Crystal Structure Of The Arfgap Domain Of Human Arfgap1
Length = 147
Score = 35.0 bits (79), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 5 AADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTN 58
A +P+W + G+ +C C HR LG H+S V+ + W L + N
Sbjct: 46 AFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGN 99
>pdb|3TV5|A Chain A, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 1
pdb|3TV5|B Chain B, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 1
pdb|3TV5|C Chain C, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 1
pdb|3TVU|A Chain A, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 3
pdb|3TVU|B Chain B, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 3
pdb|3TVU|C Chain C, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 3
pdb|3TVW|A Chain A, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 4
pdb|3TVW|B Chain B, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 4
pdb|3TVW|C Chain C, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 4
pdb|3TZ3|A Chain A, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 2
pdb|3TZ3|B Chain B, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 2
pdb|3TZ3|C Chain C, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 2
Length = 769
Score = 26.9 bits (58), Expect = 4.2, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 24/43 (55%)
Query: 71 ESKTKKKPVPSDPLHPTKAEFIKAKYEQLSFMIRSNDTQEELN 113
E++T + +P+DP +P AE + + Q+ F + T + +N
Sbjct: 423 ETRTVENLIPADPANPNSAETLIQQAGQVWFPNSAFKTAQAIN 465
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.129 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,273,480
Number of Sequences: 62578
Number of extensions: 155408
Number of successful extensions: 729
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 711
Number of HSP's gapped (non-prelim): 17
length of query: 143
length of database: 14,973,337
effective HSP length: 89
effective length of query: 54
effective length of database: 9,403,895
effective search space: 507810330
effective search space used: 507810330
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)