Query psy13622
Match_columns 143
No_of_seqs 113 out of 1129
Neff 6.7
Searched_HMMs 29240
Date Fri Aug 16 15:55:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13622.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13622hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3jue_A Arfgap with coiled-coil 100.0 4.8E-42 1.6E-46 285.1 12.2 140 1-142 49-230 (368)
2 2iqj_A Stromal membrane-associ 100.0 1.7E-42 5.9E-47 253.5 7.3 99 1-105 31-129 (134)
3 2crr_A Stromal membrane-associ 100.0 4.1E-42 1.4E-46 253.4 7.2 98 1-104 33-130 (141)
4 2olm_A Nucleoporin-like protei 100.0 3.2E-41 1.1E-45 248.4 8.8 100 1-104 29-128 (140)
5 3lvq_E ARF-GAP with SH3 domain 100.0 3.9E-38 1.3E-42 267.6 9.7 135 1-141 27-161 (497)
6 1dcq_A PYK2-associated protein 100.0 2E-37 7E-42 246.5 12.5 138 1-140 21-158 (278)
7 2b0o_E UPLC1; arfgap, structur 100.0 3E-37 1E-41 248.3 12.6 134 1-140 46-179 (301)
8 3lju_X ARF-GAP with dual PH do 100.0 8.7E-37 3E-41 255.7 8.4 101 1-105 38-138 (386)
9 2owa_A Arfgap-like finger doma 100.0 7.2E-36 2.4E-40 219.2 5.7 93 1-100 40-132 (138)
10 3dwd_A ADP-ribosylation factor 100.0 5.5E-34 1.9E-38 210.4 3.1 69 1-69 42-110 (147)
11 2crw_A ARF GAP 3, ADP-ribosyla 100.0 6.8E-34 2.3E-38 210.9 2.2 70 1-70 33-103 (149)
12 2p57_A GTPase-activating prote 100.0 4.1E-32 1.4E-36 200.1 4.9 69 1-69 41-110 (144)
13 3sub_A ADP-ribosylation factor 100.0 6.9E-32 2.4E-36 201.9 5.1 70 1-70 26-95 (163)
14 3o47_A ADP-ribosylation factor 99.9 4.7E-28 1.6E-32 197.7 5.9 69 1-69 41-109 (329)
15 4g8k_A 2-5A-dependent ribonucl 90.3 0.36 1.2E-05 37.3 4.8 31 112-142 25-55 (337)
16 1n0q_A 3ANK, 3 ankyrin repeats 85.4 0.84 2.9E-05 28.4 3.5 28 115-142 5-32 (93)
17 2zgd_A 3 repeat synthetic anky 84.7 1.2 3.9E-05 28.8 4.0 30 113-142 25-54 (110)
18 1n0q_A 3ANK, 3 ankyrin repeats 82.2 1.5 5.1E-05 27.2 3.6 28 115-142 38-65 (93)
19 2zgd_A 3 repeat synthetic anky 80.6 1.8 6.3E-05 27.8 3.8 28 115-142 60-87 (110)
20 4gpm_A Engineered protein OR26 78.8 2 6.9E-05 30.4 3.8 28 115-142 73-100 (169)
21 2l6b_A NR1C; ankyrin, consensu 77.4 1.8 6E-05 27.7 2.9 28 115-142 12-39 (115)
22 3aaa_C Myotrophin, protein V-1 76.3 2.5 8.6E-05 27.4 3.5 28 115-142 43-70 (123)
23 4gpm_A Engineered protein OR26 75.7 2.8 9.5E-05 29.7 3.8 28 115-142 106-133 (169)
24 4g8k_A 2-5A-dependent ribonucl 75.3 2.1 7.1E-05 32.8 3.2 27 115-141 304-330 (337)
25 4b93_B Ankyrin repeat domain-c 75.2 2.7 9.1E-05 31.9 3.8 28 115-142 188-215 (269)
26 2jab_A H10-2-G3; HER2, darpin, 75.0 3 0.0001 27.6 3.6 28 115-142 50-77 (136)
27 1s70_B 130 kDa myosin-binding 74.3 3 0.0001 31.0 3.8 29 114-142 42-70 (299)
28 3aaa_C Myotrophin, protein V-1 74.0 3.4 0.00012 26.7 3.6 29 114-142 75-103 (123)
29 1bi7_B P16INK4A, MTS1, multipl 73.0 3.1 0.00011 28.2 3.4 28 115-142 81-108 (156)
30 1d9s_A Cyclin-dependent kinase 72.6 3.8 0.00013 27.0 3.7 29 114-142 80-108 (136)
31 2jab_A H10-2-G3; HER2, darpin, 71.8 4 0.00014 26.9 3.6 29 114-142 82-110 (136)
32 3c5r_A BARD-1, BRCA1-associate 71.5 4.4 0.00015 26.6 3.8 29 114-142 78-106 (137)
33 2l6b_A NR1C; ankyrin, consensu 71.3 2.5 8.6E-05 27.0 2.4 28 115-142 45-72 (115)
34 1bd8_A P19INK4D CDK4/6 inhibit 70.7 4.6 0.00016 27.0 3.8 29 114-142 70-98 (156)
35 3v30_A DNA-binding protein rfx 69.7 4.4 0.00015 27.6 3.6 28 115-142 39-66 (172)
36 3ehr_A Osteoclast-stimulating 69.4 4.4 0.00015 29.0 3.6 28 115-142 76-103 (222)
37 3hra_A Ankyrin repeat family p 69.2 4.6 0.00016 28.1 3.6 28 115-142 42-69 (201)
38 2y1l_E Darpin-8.4; hydrolase-i 69.0 5.1 0.00017 27.4 3.8 28 115-142 50-77 (169)
39 3f6q_A Integrin-linked protein 68.8 5.1 0.00018 27.6 3.8 28 115-142 42-69 (179)
40 3twr_A Tankyrase-2; ankyrin re 68.7 5.3 0.00018 27.0 3.8 28 115-142 45-72 (165)
41 2rfa_A Transient receptor pote 68.6 4.7 0.00016 28.8 3.6 29 114-142 123-151 (232)
42 1ihb_A P18-INK4C(INK6), cyclin 68.3 5.1 0.00018 26.8 3.6 28 115-142 73-100 (162)
43 3jxi_A Vanilloid receptor-rela 68.3 4.7 0.00016 29.4 3.6 28 115-142 96-123 (260)
44 2vge_A RELA-associated inhibit 68.3 4.1 0.00014 29.9 3.4 29 114-142 23-51 (229)
45 3v31_A Ankyrin repeat family A 68.2 5.5 0.00019 27.0 3.8 28 115-142 39-66 (167)
46 1sw6_A Regulatory protein SWI6 67.5 4.8 0.00016 31.1 3.7 29 114-142 133-161 (327)
47 3c5r_A BARD-1, BRCA1-associate 67.4 5.7 0.0002 26.0 3.6 28 115-142 46-73 (137)
48 2etb_A Transient receptor pote 67.3 5.4 0.00018 29.1 3.8 29 114-142 92-120 (256)
49 2pnn_A Transient receptor pote 67.0 5.3 0.00018 29.5 3.7 29 114-142 103-131 (273)
50 1dcq_A PYK2-associated protein 66.9 5 0.00017 30.6 3.6 29 114-142 207-235 (278)
51 3twr_A Tankyrase-2; ankyrin re 66.6 6.1 0.00021 26.6 3.8 28 115-142 111-138 (165)
52 1n0r_A 4ANK, 4 ankyrin repeats 66.3 6.9 0.00023 24.7 3.8 28 115-142 71-98 (126)
53 1sw6_A Regulatory protein SWI6 66.3 5.1 0.00018 30.9 3.6 29 114-142 285-313 (327)
54 1oy3_D Transcription factor in 66.1 5.8 0.0002 28.9 3.8 27 115-141 195-221 (282)
55 2vge_A RELA-associated inhibit 66.1 5.8 0.0002 29.1 3.8 28 115-142 57-84 (229)
56 3v30_A DNA-binding protein rfx 65.9 6.4 0.00022 26.8 3.8 29 114-142 104-132 (172)
57 1n0r_A 4ANK, 4 ankyrin repeats 65.9 6.2 0.00021 24.9 3.5 28 115-142 38-65 (126)
58 1awc_B Protein (GA binding pro 65.8 5.4 0.00018 26.7 3.3 28 115-142 70-97 (153)
59 1ycs_B 53BP2, P53BP2; ankyrin 65.7 5.2 0.00018 29.2 3.4 28 115-142 73-100 (239)
60 3f6q_A Integrin-linked protein 65.5 6.2 0.00021 27.2 3.6 28 115-142 75-102 (179)
61 3ljn_A Hypothetical protein; a 65.3 8.2 0.00028 29.8 4.7 31 112-142 20-50 (364)
62 1ycs_B 53BP2, P53BP2; ankyrin 65.0 3.9 0.00013 30.0 2.6 30 113-142 38-67 (239)
63 1awc_B Protein (GA binding pro 65.0 7 0.00024 26.1 3.8 29 114-142 102-130 (153)
64 3deo_A Signal recognition part 64.9 6 0.0002 27.5 3.5 28 115-142 79-106 (183)
65 2y1l_E Darpin-8.4; hydrolase-i 64.7 7 0.00024 26.7 3.8 29 114-142 115-143 (169)
66 3deo_A Signal recognition part 64.4 6.4 0.00022 27.4 3.6 29 114-142 112-140 (183)
67 4hbd_A KN motif and ankyrin re 64.1 6.5 0.00022 29.6 3.8 29 114-142 185-213 (276)
68 1u5k_A Hypothetical protein; O 63.9 7.6 0.00026 29.3 4.1 47 2-64 155-201 (244)
69 2f8y_A Notch homolog 1, transl 63.3 7.3 0.00025 27.5 3.8 28 115-142 28-55 (223)
70 1ikn_D Protein (I-kappa-B-alph 63.2 6.3 0.00022 28.3 3.5 28 115-142 154-181 (236)
71 3v31_A Ankyrin repeat family A 62.9 8 0.00027 26.1 3.8 28 115-142 105-132 (167)
72 1oy3_D Transcription factor in 62.7 6.8 0.00023 28.6 3.6 28 115-142 48-75 (282)
73 3t8k_A Uncharacterized protein 62.1 7.2 0.00025 27.8 3.6 29 114-142 40-72 (186)
74 4b93_B Ankyrin repeat domain-c 61.7 4.6 0.00016 30.5 2.5 28 115-142 155-182 (269)
75 1wdy_A 2-5A-dependent ribonucl 61.4 6.9 0.00024 28.3 3.4 28 115-142 256-283 (285)
76 3ehr_A Osteoclast-stimulating 61.3 6.8 0.00023 28.0 3.3 29 114-142 142-170 (222)
77 1s70_B 130 kDa myosin-binding 60.9 8.1 0.00028 28.6 3.8 27 115-141 202-228 (299)
78 3aji_A 26S proteasome non-ATPa 60.8 8.6 0.00029 27.3 3.8 28 115-142 175-202 (231)
79 1k1a_A B-cell lymphoma 3-encod 60.7 8.1 0.00028 27.5 3.6 27 115-141 186-212 (241)
80 3ui2_A Signal recognition part 60.6 7.5 0.00026 28.6 3.5 28 115-142 80-107 (244)
81 1yyh_A HN1;, notch 1, ankyrin 60.5 8 0.00027 28.3 3.6 28 115-142 60-87 (253)
82 3ui2_A Signal recognition part 60.4 8.4 0.00029 28.3 3.8 29 114-142 113-141 (244)
83 2rfm_A Putative ankyrin repeat 59.3 8.6 0.00029 26.7 3.5 28 115-142 137-164 (192)
84 2b0o_E UPLC1; arfgap, structur 59.0 8.8 0.0003 29.6 3.8 28 115-142 229-256 (301)
85 2etb_A Transient receptor pote 58.9 9.5 0.00033 27.7 3.8 29 114-142 138-169 (256)
86 2rfm_A Putative ankyrin repeat 58.6 9.3 0.00032 26.5 3.6 28 115-142 71-98 (192)
87 2xai_A ASB-9, ankyrin repeat a 58.5 9 0.00031 28.2 3.6 28 115-142 169-196 (261)
88 1yyh_A HN1;, notch 1, ankyrin 58.1 9.3 0.00032 27.9 3.6 28 115-142 160-187 (253)
89 2f8y_A Notch homolog 1, transl 58.0 10 0.00035 26.7 3.8 28 115-142 128-155 (223)
90 1k1a_A B-cell lymphoma 3-encod 57.9 10 0.00035 26.9 3.8 28 115-142 153-180 (241)
91 3eu9_A Huntingtin-interacting 57.5 9.2 0.00031 26.9 3.4 29 114-142 179-207 (240)
92 3utm_A Tankyrase-1; tankyrase, 57.2 10 0.00035 28.4 3.8 28 115-142 250-277 (351)
93 3lvq_E ARF-GAP with SH3 domain 57.2 9.1 0.00031 31.5 3.8 28 115-142 210-237 (497)
94 2xai_A ASB-9, ankyrin repeat a 57.1 9.8 0.00033 28.0 3.6 28 115-142 39-66 (261)
95 2dzn_A Probable 26S proteasome 57.0 10 0.00035 26.7 3.6 28 115-142 177-205 (228)
96 3utm_A Tankyrase-1; tankyrase, 56.8 10 0.00035 28.4 3.8 28 115-142 61-88 (351)
97 3jxi_A Vanilloid receptor-rela 56.4 11 0.00038 27.3 3.8 29 114-142 142-173 (260)
98 3aji_A 26S proteasome non-ATPa 55.6 11 0.00038 26.6 3.6 28 115-142 43-70 (231)
99 3jue_A Arfgap with coiled-coil 55.5 10 0.00036 30.4 3.8 29 114-142 237-265 (368)
100 1ikn_D Protein (I-kappa-B-alph 55.4 10 0.00036 27.1 3.5 29 114-142 119-147 (236)
101 3ljn_A Hypothetical protein; a 55.1 8 0.00028 29.8 2.9 28 115-142 214-241 (364)
102 3b7b_A Euchromatic histone-lys 55.1 11 0.00037 26.9 3.5 28 115-142 180-207 (237)
103 2dzn_A Probable 26S proteasome 54.9 12 0.00043 26.3 3.8 28 115-142 110-137 (228)
104 2pnn_A Transient receptor pote 54.7 12 0.00041 27.5 3.8 29 114-142 150-181 (273)
105 2rfa_A Transient receptor pote 54.4 13 0.00044 26.4 3.8 29 114-142 77-105 (232)
106 3d9h_A CDNA FLJ77766, highly s 54.2 9 0.00031 28.8 3.0 28 115-142 62-89 (285)
107 1d9s_A Cyclin-dependent kinase 53.6 5.4 0.00019 26.3 1.5 27 115-142 48-74 (136)
108 3kea_A K1L; tropism, ANK repea 53.4 9 0.00031 28.8 2.9 29 114-142 64-92 (285)
109 1gnf_A Transcription factor GA 52.9 9.2 0.00032 22.1 2.2 31 2-32 9-40 (46)
110 1wdy_A 2-5A-dependent ribonucl 52.9 14 0.00047 26.7 3.8 28 115-142 42-69 (285)
111 3d9h_A CDNA FLJ77766, highly s 52.3 14 0.00046 27.7 3.8 28 115-142 225-252 (285)
112 3t8k_A Uncharacterized protein 51.3 13 0.00045 26.4 3.4 28 115-142 78-111 (186)
113 3b7b_A Euchromatic histone-lys 50.6 13 0.00045 26.4 3.3 28 115-142 147-174 (237)
114 3hra_A Ankyrin repeat family p 50.4 16 0.00056 25.1 3.7 28 115-142 143-175 (201)
115 1bi7_B P16INK4A, MTS1, multipl 50.4 6.3 0.00022 26.6 1.5 29 114-142 113-141 (156)
116 1n11_A Ankyrin; clathrin, BAND 50.3 14 0.00049 29.1 3.7 26 116-141 348-373 (437)
117 2vut_I AREA, nitrogen regulato 50.1 11 0.00037 21.5 2.2 31 1-31 5-36 (43)
118 2fo1_E LIN-12 protein; beta-ba 49.4 14 0.00048 28.9 3.5 28 115-142 316-343 (373)
119 4glq_A Methyl-accepting chemot 48.8 5.6 0.00019 28.3 1.0 28 43-70 131-158 (171)
120 3kea_A K1L; tropism, ANK repea 48.7 11 0.00036 28.4 2.6 28 115-142 34-61 (285)
121 2fo1_E LIN-12 protein; beta-ba 48.1 15 0.00053 28.6 3.6 29 114-142 168-196 (373)
122 1ihb_A P18-INK4C(INK6), cyclin 47.9 15 0.00052 24.3 3.2 27 115-142 41-67 (162)
123 3eu9_A Huntingtin-interacting 46.4 19 0.00066 25.2 3.6 29 114-142 78-106 (240)
124 1bd8_A P19INK4D CDK4/6 inhibit 44.0 22 0.00075 23.4 3.4 27 115-142 39-65 (156)
125 4hbd_A KN motif and ankyrin re 43.6 22 0.00075 26.5 3.7 29 114-142 113-142 (276)
126 1n11_A Ankyrin; clathrin, BAND 42.3 17 0.00059 28.6 3.0 28 115-142 314-341 (437)
127 1dsz_A RAR-alpha, retinoic aci 40.7 12 0.00042 24.2 1.6 24 3-29 10-33 (86)
128 1cit_A NGFI-B, protein (orphan 39.7 15 0.00051 24.0 1.9 18 12-29 12-29 (89)
129 1a6y_A Orphan nuclear receptor 39.6 12 0.00039 24.8 1.4 18 12-29 19-36 (94)
130 4gat_A Nitrogen regulatory pro 39.0 20 0.00068 22.2 2.3 32 1-32 13-45 (66)
131 2han_B Ecdysone receptor; tran 37.5 13 0.00044 25.6 1.4 18 12-29 20-37 (119)
132 2han_A Protein ultraspiracle; 36.4 16 0.00053 24.1 1.6 18 12-29 22-39 (93)
133 4hc9_A Trans-acting T-cell-spe 36.3 20 0.00068 24.5 2.2 32 1-32 9-41 (115)
134 3dfx_A Trans-acting T-cell-spe 36.2 14 0.00048 22.8 1.3 32 1-32 11-43 (63)
135 1hcq_A Protein (estrogen recep 35.9 15 0.00051 23.7 1.4 18 12-29 16-33 (84)
136 3cbb_A HNF-4-alpha, hepatocyte 35.6 12 0.0004 23.9 0.9 18 12-29 12-29 (78)
137 2nll_B Protein (thyroid hormon 35.3 15 0.0005 24.7 1.3 24 3-29 7-30 (103)
138 1ynw_B Retinoic acid receptor 34.0 13 0.00046 24.8 1.0 18 12-29 15-32 (99)
139 2ebl_A COUP transcription fact 33.3 14 0.00047 24.2 0.9 18 12-29 19-36 (89)
140 1lo1_A Steroid hormone recepto 27.8 20 0.00068 23.8 1.0 18 12-29 16-33 (98)
141 1r4i_A Androgen receptor; AR, 27.1 21 0.00072 24.0 1.0 18 12-29 19-36 (105)
142 1kb2_A Vitamin D3 receptor; VD 27.1 17 0.00058 24.7 0.6 18 12-29 18-35 (110)
143 2kae_A GATA-type transcription 26.2 18 0.00063 22.8 0.6 30 2-32 13-45 (71)
144 1dsz_B RXR-alpha, retinoic aci 25.8 19 0.00064 23.3 0.6 18 12-29 17-34 (85)
145 2a66_A Orphan nuclear receptor 24.4 25 0.00086 24.0 1.0 18 12-29 21-38 (113)
146 3cit_A Sensor histidine kinase 22.9 44 0.0015 24.1 2.2 60 2-62 80-143 (160)
147 2yqk_A Arginine-glutamic acid 22.9 64 0.0022 19.2 2.6 18 38-55 5-22 (63)
148 3f40_A Uncharacterized NTF2-li 21.8 57 0.002 21.2 2.4 29 106-134 5-33 (114)
149 2e72_A POGO transposable eleme 21.1 31 0.001 20.2 0.8 19 4-24 1-19 (49)
150 1ovx_A ATP-dependent CLP prote 20.4 29 0.00098 21.7 0.6 12 15-26 38-49 (67)
No 1
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=100.00 E-value=4.8e-42 Score=285.12 Aligned_cols=140 Identities=32% Similarity=0.544 Sum_probs=123.9
Q ss_pred CCCCCCCCCeeecccceeeccchhhhhhcCCCCcceeeeCCCCCCChHHHHHHHhhccCchhHHhccccccccCCCCCCC
Q psy13622 1 MSSRAADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSLWEHSLCESKTKKKPVP 80 (143)
Q Consensus 1 ~DCga~~P~was~n~gvfiC~~CsgiHR~lg~~iskVks~~ld~w~~~~v~~~~~~GN~~~n~~~ea~~~~~~~~~kP~~ 80 (143)
+|||+++|+|||+|+|||||++||||||+||+|||+|||++||.|++++|++|+.+||..+|++||+++++ ....||.|
T Consensus 49 ~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~~s~v~s~~~d~w~~~~~~~~~~~gn~~~n~~~e~~~~~-~~~~kp~~ 127 (368)
T 3jue_A 49 CDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCELGNVIINQIYEARVEA-MAVKKPGP 127 (368)
T ss_dssp TTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHHSCHHHHHHHHTTTTTT-TTCCCCCT
T ss_pred CCCCCCCCCeEEecCCeEEcHhHHHHHhccCCCcCeeEEeecccccHHHHHHHHHHccHHHHHHHHhhccc-ccCcCCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999973 34578998
Q ss_pred CCCChHHHHHHHHHHHhcCccccCCCCC------------------------------------HHHH-----HHHHHHh
Q psy13622 81 SDPLHPTKAEFIKAKYEQLSFMIRSNDT------------------------------------QEEL-----NQQLHSS 119 (143)
Q Consensus 81 ~~~~~~~r~~fI~~KY~~k~f~~~~~~~------------------------------------~~~~-----~~~l~~a 119 (143)
+++. +.|++||++||++|+|+.+.... .+++ ...|+.|
T Consensus 128 ~~~~-~~re~fIr~KY~~k~f~~~l~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~L~~A 206 (368)
T 3jue_A 128 SCSR-QEKEAWIHAKYVEKKFLTKLPEIRGRRGGRGRPRGQPPVPPKPSIRPRPGSLRSKPEPPSEDLGSLHPGALLFRA 206 (368)
T ss_dssp TSCH-HHHHHHHHHHHTSCTTCCSCC--------------------------------------------CCHHHHHHHH
T ss_pred CCCH-HHHHHHHHHHHHhhcccccchhhhhccccccCcccCCCCCCCcccCCCCccccccccccccccccCCCCcHHHHH
Confidence 8775 89999999999999999874211 0111 2489999
Q ss_pred hhc-CCHHHHHHHHHcCCCCCCcC
Q psy13622 120 VRT-SNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 120 v~~-~~~~~~~~ll~~Ga~~n~~~ 142 (143)
+.. +++..+..||..|+|+|..+
T Consensus 207 a~~~g~~~~v~~LL~~Gadvn~~~ 230 (368)
T 3jue_A 207 SGHPPSLPTMADALAHGADVNWVN 230 (368)
T ss_dssp TSSSCCHHHHHHHHHTTCCTTCCC
T ss_pred HHccCCHHHHHHHHHcCCCCCccc
Confidence 999 99999999999999999876
No 2
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=100.00 E-value=1.7e-42 Score=253.52 Aligned_cols=99 Identities=36% Similarity=0.677 Sum_probs=91.7
Q ss_pred CCCCCCCCCeeecccceeeccchhhhhhcCCCCcceeeeCCCCCCChHHHHHHHhhccCchhHHhccccccccCCCCCCC
Q psy13622 1 MSSRAADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSLWEHSLCESKTKKKPVP 80 (143)
Q Consensus 1 ~DCga~~P~was~n~gvfiC~~CsgiHR~lg~~iskVks~~ld~w~~~~v~~~~~~GN~~~n~~~ea~~~~~~~~~kP~~ 80 (143)
+|||+++|+|||+|+|||||++|||+||+||+|||+|||++||+|++++|++|+.+||..+|++||+++|+ .+.+|.+
T Consensus 31 aDCg~~~P~WaS~n~GvfiC~~CsgiHR~lG~hiS~VkSl~ld~w~~~~l~~m~~~GN~~an~~~e~~lp~--~~~~P~~ 108 (134)
T 2iqj_A 31 ADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCMQEMGNGKANRLYEAYLPE--TFRRPQI 108 (134)
T ss_dssp TTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHTCHHHHHHHHHTTTCCS--SCCCCCS
T ss_pred CcCcCCCCCeEEecCCEEEhHhhhHHHhcCCCCCCceeeccccCCCHHHHHHHHHHchHHHHHHHHhcCCc--cCCCCCc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999974 3456654
Q ss_pred CCCChHHHHHHHHHHHhcCccccCC
Q psy13622 81 SDPLHPTKAEFIKAKYEQLSFMIRS 105 (143)
Q Consensus 81 ~~~~~~~r~~fI~~KY~~k~f~~~~ 105 (143)
+ +.+++||++||++|+|+.+.
T Consensus 109 ~----~~~e~fIr~KY~~k~f~~~~ 129 (134)
T 2iqj_A 109 D----PAVEGFIRDKYEKKKYMDRS 129 (134)
T ss_dssp H----HHHHHHHHHHHTSCTTCCTT
T ss_pred h----HHHHHHHHHHHhCCeeeCCc
Confidence 2 57999999999999999874
No 3
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=4.1e-42 Score=253.41 Aligned_cols=98 Identities=32% Similarity=0.600 Sum_probs=91.3
Q ss_pred CCCCCCCCCeeecccceeeccchhhhhhcCCCCcceeeeCCCCCCChHHHHHHHhhccCchhHHhccccccccCCCCCCC
Q psy13622 1 MSSRAADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSLWEHSLCESKTKKKPVP 80 (143)
Q Consensus 1 ~DCga~~P~was~n~gvfiC~~CsgiHR~lg~~iskVks~~ld~w~~~~v~~~~~~GN~~~n~~~ea~~~~~~~~~kP~~ 80 (143)
+|||+++|+|||+|||||||++|||+||+||+|||+||||+||+|++++|++|+.+||..+|++||+++|+ ...+|.+
T Consensus 33 aDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VkSl~ld~w~~~~l~~m~~~GN~~an~~~e~~lp~--~~~~P~~ 110 (141)
T 2crr_A 33 ADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTAEQIQCMQDMGNTKARLLYEANLPE--NFRRPQT 110 (141)
T ss_dssp SSSCCSSCCSEETTTTEECCHHHHHHHHHHCTTTCCCBCSSSSCCCHHHHHHHHHTHHHHHHHHGGGSCCT--TCCCCCS
T ss_pred CCCCCCCCCeEEeccCeEEhhhhhHhHhcCCCCCCeeeECCCCCCCHHHHHHHHHHccHHHHHHHHhcCCc--ccCCCCc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999974 3456654
Q ss_pred CCCChHHHHHHHHHHHhcCccccC
Q psy13622 81 SDPLHPTKAEFIKAKYEQLSFMIR 104 (143)
Q Consensus 81 ~~~~~~~r~~fI~~KY~~k~f~~~ 104 (143)
+ +.+++||++||++|+|+.+
T Consensus 111 ~----~~~e~fIr~KY~~k~f~~~ 130 (141)
T 2crr_A 111 D----QAVEFFIRDKYEKKKYYDK 130 (141)
T ss_dssp H----HHHHHHHHHHHTSCTTCCC
T ss_pred h----HHHHHHHHHHHhcCcccCC
Confidence 2 5789999999999999987
No 4
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=100.00 E-value=3.2e-41 Score=248.40 Aligned_cols=100 Identities=21% Similarity=0.411 Sum_probs=90.8
Q ss_pred CCCCCCCCCeeecccceeeccchhhhhhcCCCCcceeeeCCCCCCChHHHHHHHhhccCchhHHhccccccccCCCCCCC
Q psy13622 1 MSSRAADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSLWEHSLCESKTKKKPVP 80 (143)
Q Consensus 1 ~DCga~~P~was~n~gvfiC~~CsgiHR~lg~~iskVks~~ld~w~~~~v~~~~~~GN~~~n~~~ea~~~~~~~~~kP~~ 80 (143)
+|||+++|+|||+|||||||++||||||+||+| |+||||+||+|++++|++|+.+||..+|++||+++++ ...++|.+
T Consensus 29 aDCg~~~P~WaS~n~GvfiC~~CsgiHR~LG~~-s~VrSl~ld~w~~~~l~~m~~~GN~~an~~~e~~~~~-~~~~~P~~ 106 (140)
T 2olm_A 29 FDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPP-HRVKSISMTTFTQQEIEFLQKHGNEVCKQIWLGLFDD-RSSAIPDF 106 (140)
T ss_dssp TTTCSSCCCEEETTTTEEECHHHHHHHTTSSSC-CCEEETTTCCCCHHHHHHHHHCHHHHHHHHHTTTCCT-TTSCCCCT
T ss_pred CCCCCCCCCceeeccCEEEchhccchhccCCCc-ceeeecCCCCCCHHHHHHHHHhccHHHHHHHHhhCCc-ccCCCCCC
Confidence 699999999999999999999999999999996 9999999999999999999999999999999999963 34456655
Q ss_pred CCCChHHHHHHHHHHHhcCccccC
Q psy13622 81 SDPLHPTKAEFIKAKYEQLSFMIR 104 (143)
Q Consensus 81 ~~~~~~~r~~fI~~KY~~k~f~~~ 104 (143)
++. +.+++||++||++++|+.+
T Consensus 107 ~d~--~~~~~fIr~KYe~k~f~~~ 128 (140)
T 2olm_A 107 RDP--QKVKEFLQEKYEKKRWYVP 128 (140)
T ss_dssp TCH--HHHHHHHHHHHTSCTTCCC
T ss_pred CCH--HHHHHHHHHHHcCCeeeCC
Confidence 432 5788999999999999987
No 5
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=100.00 E-value=3.9e-38 Score=267.61 Aligned_cols=135 Identities=28% Similarity=0.427 Sum_probs=124.0
Q ss_pred CCCCCCCCCeeecccceeeccchhhhhhcCCCCcceeeeCCCCCCChHHHHHHHhhccCchhHHhccccccccCCCCCCC
Q psy13622 1 MSSRAADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSLWEHSLCESKTKKKPVP 80 (143)
Q Consensus 1 ~DCga~~P~was~n~gvfiC~~CsgiHR~lg~~iskVks~~ld~w~~~~v~~~~~~GN~~~n~~~ea~~~~~~~~~kP~~ 80 (143)
.|||+++|+|+|+|+|||+|++|||+||+||+|||||||++||.|+++++++|+.+||..+|.+||+.+|+ ....+|.+
T Consensus 27 ~dc~~~~p~w~s~~~~~~~c~~c~~~hr~lg~~~s~vrsl~ld~w~~~~~~l~~~~GN~~an~i~E~~lp~-~~~~kP~~ 105 (497)
T 3lvq_E 27 CDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNMGNTSFNEVMEAQLPS-HGGPKPSA 105 (497)
T ss_dssp TTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGTTTTTCCHHHHHHHHTTTCCS-SSCSCCCT
T ss_pred cCCCCCCCCEEEechhHHhHHhhHHHHHhhccccceecccccCCCCHHHHHHHHHHhhHHHHHHHHhhccc-ccCCCCCC
Confidence 59999999999999999999999999999999999999999999999999999999999999999999974 34578887
Q ss_pred CCCChHHHHHHHHHHHhcCccccCCCCCHHHHHHHHHHhhhcCCHHHHHHHHHcCCCCCCc
Q psy13622 81 SDPLHPTKAEFIKAKYEQLSFMIRSNDTQEELNQQLHSSVRTSNLDTSLRLLSQGADPNYF 141 (143)
Q Consensus 81 ~~~~~~~r~~fI~~KY~~k~f~~~~~~~~~~~~~~l~~av~~~~~~~~~~ll~~Ga~~n~~ 141 (143)
.++. ..|++||++||+++.|..+...+. ++|+.|+..|++..+..||..|+|+|..
T Consensus 106 ~s~~-~~re~fIraky~~~~f~~~~~~~~----~~L~~A~~~g~~~~v~~ll~~g~~~n~~ 161 (497)
T 3lvq_E 106 ESDM-GTRRDYIMAKYVEHRFARRCTPEP----QRLWTAICNRDLLSVLEAFANGQDFGQP 161 (497)
T ss_dssp TCCH-HHHHHHHHHHHTTCTTSCCCC-CH----HHHHHHHHHTCHHHHHHHHHTTCCSSSC
T ss_pred cCcH-HHHHHHHHHHhhcccccccccccH----HHHHHHHhccCHHHHHHHHhhcccccCC
Confidence 7765 799999999999999999865544 6799999999999999999999999865
No 6
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=100.00 E-value=2e-37 Score=246.53 Aligned_cols=138 Identities=26% Similarity=0.414 Sum_probs=128.8
Q ss_pred CCCCCCCCCeeecccceeeccchhhhhhcCCCCcceeeeCCCCCCChHHHHHHHhhccCchhHHhccccccccCCCCCCC
Q psy13622 1 MSSRAADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSLWEHSLCESKTKKKPVP 80 (143)
Q Consensus 1 ~DCga~~P~was~n~gvfiC~~CsgiHR~lg~~iskVks~~ld~w~~~~v~~~~~~GN~~~n~~~ea~~~~~~~~~kP~~ 80 (143)
+|||+++|+|+|+|+|+|+|++|||+||+||+|||+|||++||.|+++++.+|..+||..+|++||+.++.+ ...+|.|
T Consensus 21 ~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~is~v~s~~~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~-~~~kP~~ 99 (278)
T 1dcq_A 21 CDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKNIGNAGFNEIMECCLPSE-DPVKPNP 99 (278)
T ss_dssp TTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGHHHHHSCHHHHHHHHTTTCCSS-SCCSCCT
T ss_pred CCCCCCCCCeEEecCCeEEcHHHHHHHhhcCCCcceeeeeecCCCCHHHHHHHHHcCcHHHHHHHHhhCChh-hcCCCCC
Confidence 599999999999999999999999999999999999999999999999999999999999999999999753 3458888
Q ss_pred CCCChHHHHHHHHHHHhcCccccCCCCCHHHHHHHHHHhhhcCCHHHHHHHHHcCCCCCC
Q psy13622 81 SDPLHPTKAEFIKAKYEQLSFMIRSNDTQEELNQQLHSSVRTSNLDTSLRLLSQGADPNY 140 (143)
Q Consensus 81 ~~~~~~~r~~fI~~KY~~k~f~~~~~~~~~~~~~~l~~av~~~~~~~~~~ll~~Ga~~n~ 140 (143)
.++. ..+++||++||..++|..+...+.......|+.|++.+|+..+..++..|+++|.
T Consensus 100 ~s~~-~~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a~~~~d~~~~~~ll~~g~~~~~ 158 (278)
T 1dcq_A 100 GSDM-IARKDYITAKYMERRYARKKHADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTE 158 (278)
T ss_dssp TCCH-HHHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHHHHTTCHHHHHHHHHTTCCTTS
T ss_pred CCCH-HHHHHHHHHHHHHhhcccccccccchhhhhhhhHhhhcccHHHHHHHHhhcchhh
Confidence 7765 8999999999999999999877888888999999999999999999999999774
No 7
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=100.00 E-value=3e-37 Score=248.30 Aligned_cols=134 Identities=28% Similarity=0.438 Sum_probs=122.2
Q ss_pred CCCCCCCCCeeecccceeeccchhhhhhcCCCCcceeeeCCCCCCChHHHHHHHhhccCchhHHhccccccccCCCCCCC
Q psy13622 1 MSSRAADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSLWEHSLCESKTKKKPVP 80 (143)
Q Consensus 1 ~DCga~~P~was~n~gvfiC~~CsgiHR~lg~~iskVks~~ld~w~~~~v~~~~~~GN~~~n~~~ea~~~~~~~~~kP~~ 80 (143)
+|||+++|+|||+|+|||+|++|||+||+||+|+|+|||++||.|+++++.+|..+||..+|++||+.++. ....+|.+
T Consensus 46 ~dc~~~~p~w~s~~~g~~~c~~cs~~hr~lg~~is~v~sl~lD~w~~~~l~~~~~~GN~~~n~i~E~~l~~-~~~~kP~~ 124 (301)
T 2b0o_E 46 CDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNMGNTSFNEVMEAQLPS-HGGPKPSA 124 (301)
T ss_dssp TTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHHCCHHHHHHHHTTTCCS-SSCSCCCT
T ss_pred CCCCCCCCCeEEeecCeEEcHHHHHHHHhhCCCcccccccCcCCCCHHHHHHHHHcCCHHHHHHHHHhhhh-ccCCCCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999974 34578887
Q ss_pred CCCChHHHHHHHHHHHhcCccccCCCCCHHHHHHHHHHhhhcCCHHHHHHHHHcCCCCCC
Q psy13622 81 SDPLHPTKAEFIKAKYEQLSFMIRSNDTQEELNQQLHSSVRTSNLDTSLRLLSQGADPNY 140 (143)
Q Consensus 81 ~~~~~~~r~~fI~~KY~~k~f~~~~~~~~~~~~~~l~~av~~~~~~~~~~ll~~Ga~~n~ 140 (143)
.++. ..|++||++||++++|..+.... .+.|+.|+..+++..+..|+..|+|+|.
T Consensus 125 ~s~~-~~r~~~I~~Ky~~~~f~~~~~~~----~~~L~~A~~~g~~~~v~~ll~~g~d~~~ 179 (301)
T 2b0o_E 125 ESDM-GTRRDYIMAKYVEHRFARRCTPE----PQRLWTAICNRDLLSVLEAFANGQDFGQ 179 (301)
T ss_dssp TCCH-HHHHHHHHHHHTSCTTSCCCC-C----HHHHHHHHHTTCHHHHHHHHHTTCCTTS
T ss_pred cccH-HHHHHHHHHHHHhhhhhcccCch----HHHHhhhhhccCHHHHHHHHhcCCcccc
Confidence 7665 89999999999999999875433 3579999999999999999999999987
No 8
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=100.00 E-value=8.7e-37 Score=255.67 Aligned_cols=101 Identities=28% Similarity=0.563 Sum_probs=95.1
Q ss_pred CCCCCCCCCeeecccceeeccchhhhhhcCCCCcceeeeCCCCCCChHHHHHHHhhccCchhHHhccccccccCCCCCCC
Q psy13622 1 MSSRAADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSLWEHSLCESKTKKKPVP 80 (143)
Q Consensus 1 ~DCga~~P~was~n~gvfiC~~CsgiHR~lg~~iskVks~~ld~w~~~~v~~~~~~GN~~~n~~~ea~~~~~~~~~kP~~ 80 (143)
+|||+++|+|||+|+|||||++|||+||+| +|||+||||+||.|++++|++|+.+||..+|++||+++|+ ...+|.|
T Consensus 38 ~dC~~~~p~w~s~~~g~~~C~~Csg~hr~l-~his~v~s~~ld~w~~~~~~~~~~~gN~~~~~~~e~~~~~--~~~~p~~ 114 (386)
T 3lju_X 38 ADCGAPDPDWASYTLGVFICLSCSGIHRNI-PQVSKVKSVRLDAWEEAQVEFMASHGNDAARARFESKVPS--FYYRPTP 114 (386)
T ss_dssp TTTCCBSCCEEETTTTEEECHHHHHHHHTC-TTTCCEEETTTSCCCHHHHHHHHHSSHHHHHHHHTTTCCT--TSCCCCT
T ss_pred ccCCCCCCCeEEecccEEEhhhhchHhhCC-CccceeeeecccCCCHHHHHHHHHhcchHHHHHHhccCCc--cCCCCCC
Confidence 699999999999999999999999999999 9999999999999999999999999999999999999963 4578998
Q ss_pred CCCChHHHHHHHHHHHhcCccccCC
Q psy13622 81 SDPLHPTKAEFIKAKYEQLSFMIRS 105 (143)
Q Consensus 81 ~~~~~~~r~~fI~~KY~~k~f~~~~ 105 (143)
+++. ..|++||++||++++|+.+.
T Consensus 115 ~~~~-~~~e~fIr~KY~~~~f~~~~ 138 (386)
T 3lju_X 115 SDCQ-LLREQWIRAKYERQEFIYPE 138 (386)
T ss_dssp TSCH-HHHHHHHHHHHTSCTTTSGG
T ss_pred ccch-HHHHHEHHhhhCCCEEECCc
Confidence 8765 78999999999999999874
No 9
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=7.2e-36 Score=219.23 Aligned_cols=93 Identities=25% Similarity=0.386 Sum_probs=83.1
Q ss_pred CCCCCCCCCeeecccceeeccchhhhhhcCCCCcceeeeCCCCCCChHHHHHHHhhccCchhHHhccccccccCCCCCCC
Q psy13622 1 MSSRAADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSLWEHSLCESKTKKKPVP 80 (143)
Q Consensus 1 ~DCga~~P~was~n~gvfiC~~CsgiHR~lg~~iskVks~~ld~w~~~~v~~~~~~GN~~~n~~~ea~~~~~~~~~kP~~ 80 (143)
+|||+++|+|||+|||||||++|||+||+||+|||+|||++||+|++++|++|+.+||..+|++||++..- .|
T Consensus 40 aDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~lD~w~~~~l~~m~~~GN~~an~~~e~~~~~-----~~-- 112 (138)
T 2owa_A 40 FDCESRNPTWLSLSFAVFICLNCSSDHRKMGVHISFVRSSDLDKFTPIQLVRMDIGGNGRARNYFKQVLGV-----NF-- 112 (138)
T ss_dssp TTTCCBSCCEEETTTTEEECHHHHHHHHTTCTTTCCEEETTTSCCCHHHHHHHHHCCHHHHHHHHHHHTCT-----TC--
T ss_pred CCCcCCCCCeEEecCCEEEhHhhhHHHhCCCCCCCeeeecCcCcCCHHHHHHHHhhccHHHHHHHHHHcCC-----CC--
Confidence 69999999999999999999999999999999999999999999999999999999999999999985421 12
Q ss_pred CCCChHHHHHHHHHHHhcCc
Q psy13622 81 SDPLHPTKAEFIKAKYEQLS 100 (143)
Q Consensus 81 ~~~~~~~r~~fI~~KY~~k~ 100 (143)
+.+..+..+.|+.+||+++.
T Consensus 113 ~~~~~~kY~s~~a~~Y~~kL 132 (138)
T 2owa_A 113 SPKTKEYASSICGRQYKQIL 132 (138)
T ss_dssp CGGGCHHHHSHHHHHHHHHH
T ss_pred CCCHHHHHhhHHHHHHHHHH
Confidence 22334789999999999874
No 10
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=99.98 E-value=5.5e-34 Score=210.39 Aligned_cols=69 Identities=25% Similarity=0.450 Sum_probs=65.6
Q ss_pred CCCCCCCCCeeecccceeeccchhhhhhcCCCCcceeeeCCCCCCChHHHHHHHhhccCchhHHhcccc
Q psy13622 1 MSSRAADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSLWEHSL 69 (143)
Q Consensus 1 ~DCga~~P~was~n~gvfiC~~CsgiHR~lg~~iskVks~~ld~w~~~~v~~~~~~GN~~~n~~~ea~~ 69 (143)
+|||+++|+|||+|||||||++|||+||+||+|||+||||+||+|++++|+.|+.+||.++|+|||++.
T Consensus 42 aDCga~~P~WaS~nlGvfiC~~CSgiHR~LG~hISkVkSl~LD~W~~~el~~m~~~GN~~an~~~ea~~ 110 (147)
T 3dwd_A 42 FECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGNAKFREFLESQE 110 (147)
T ss_dssp TTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEESCC--CCHHHHHHHHHCCHHHHHHHHHTST
T ss_pred CCCCCCCCCeEEecccEeEhHhhChHHhcCCCCCCccccccccCCCHHHHHHHHHHhhHHHHHHHHhCC
Confidence 699999999999999999999999999999999999999999999999999999999999999999874
No 11
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.98 E-value=6.8e-34 Score=210.94 Aligned_cols=70 Identities=30% Similarity=0.584 Sum_probs=68.1
Q ss_pred CCCCCCCCCeeecccceeeccchhhhhhcCCCCcceeeeCCCCC-CChHHHHHHHhhccCchhHHhccccc
Q psy13622 1 MSSRAADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPST-WPPSLLSMLMTLTNGGAPSLWEHSLC 70 (143)
Q Consensus 1 ~DCga~~P~was~n~gvfiC~~CsgiHR~lg~~iskVks~~ld~-w~~~~v~~~~~~GN~~~n~~~ea~~~ 70 (143)
+|||+++|+|||+|||||||++|+|+||+||+|||+|||++||+ |++++|+.|+.+||.++|+|||+++.
T Consensus 33 aDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~LD~~W~~~~l~~m~~~GN~~an~~~e~~~~ 103 (149)
T 2crw_A 33 FDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCMQVGGNASASSFFHQHGC 103 (149)
T ss_dssp SSSCCBSCCCEETTTTEECCHHHHHHHHHHCTTTCCEECSSSCCCCCHHHHHHHHTTCHHHHHHHHHHHCC
T ss_pred CCCcCCCCCcEEeccCEEEchhcchhhccCCCCCCeeeccccCCCCCHHHHHHHHHHhhHHHHHHHHhcCC
Confidence 69999999999999999999999999999999999999999996 99999999999999999999999974
No 12
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=99.97 E-value=4.1e-32 Score=200.10 Aligned_cols=69 Identities=28% Similarity=0.548 Sum_probs=67.4
Q ss_pred CCCCCCCCCeeecccceeeccchhhhhhcCCCCcceeeeCCCCC-CChHHHHHHHhhccCchhHHhcccc
Q psy13622 1 MSSRAADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPST-WPPSLLSMLMTLTNGGAPSLWEHSL 69 (143)
Q Consensus 1 ~DCga~~P~was~n~gvfiC~~CsgiHR~lg~~iskVks~~ld~-w~~~~v~~~~~~GN~~~n~~~ea~~ 69 (143)
+|||+++|+|||+|||||||++|||+||+||+|||+|||++||+ |++++|+.|+.+||+++|++||++.
T Consensus 41 aDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hIS~VrSl~LD~~W~~~~l~~m~~~GN~~an~~~e~~g 110 (144)
T 2p57_A 41 FDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNWNWFQLRCMQVGGNANATAFFRQHG 110 (144)
T ss_dssp TTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCCCCCHHHHHHHHHCCHHHHHHHHHHTT
T ss_pred CCCcCCCCCeEEeccCEEEhhhchHHHcCCCCCCCeeeecccCCCCCHHHHHHHHHhCHHHHHHHHHHcC
Confidence 69999999999999999999999999999999999999999996 9999999999999999999999885
No 13
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=99.97 E-value=6.9e-32 Score=201.86 Aligned_cols=70 Identities=26% Similarity=0.480 Sum_probs=68.4
Q ss_pred CCCCCCCCCeeecccceeeccchhhhhhcCCCCcceeeeCCCCCCChHHHHHHHhhccCchhHHhccccc
Q psy13622 1 MSSRAADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSLWEHSLC 70 (143)
Q Consensus 1 ~DCga~~P~was~n~gvfiC~~CsgiHR~lg~~iskVks~~ld~w~~~~v~~~~~~GN~~~n~~~ea~~~ 70 (143)
+|||+++|+|||+|||||||++|||+||+||+|||+|||++||.|++++|++|+.+||.++|++||++..
T Consensus 26 aDCga~~P~WaS~nlGvflCi~CSGiHR~LG~hISkVKSltLD~Wt~e~l~~m~~~GN~~an~~~e~~g~ 95 (163)
T 3sub_A 26 FDCGISNPDWVSVNHGIFLCINCSGVHRSLGVHISIVRSIKMDIFTDEQLKYIDKGGNKKCQTYLENYGI 95 (163)
T ss_dssp TTTCCBSCCEEETTTTEEECHHHHHHHHHTCTTTCCEEETTTCCCCHHHHHHHHHCCHHHHHHHHHHTTC
T ss_pred ccCCCCCCCeEEecCCeeEHHhhhHHhcCCCCCCCeeeeccccCcCHHHHHHHHhhCHHHHHHHHHHcCC
Confidence 6999999999999999999999999999999999999999999999999999999999999999999875
No 14
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.94 E-value=4.7e-28 Score=197.73 Aligned_cols=69 Identities=25% Similarity=0.450 Sum_probs=67.7
Q ss_pred CCCCCCCCCeeecccceeeccchhhhhhcCCCCcceeeeCCCCCCChHHHHHHHhhccCchhHHhcccc
Q psy13622 1 MSSRAADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSLWEHSL 69 (143)
Q Consensus 1 ~DCga~~P~was~n~gvfiC~~CsgiHR~lg~~iskVks~~ld~w~~~~v~~~~~~GN~~~n~~~ea~~ 69 (143)
+|||+++|+|||+|+|||+|++|||+||+||+|||+|||++||.|++++++.|+.+||..+|++||++.
T Consensus 41 ~dc~~~~~~~~~~~~~~~~c~~c~~~hr~~~~~~s~v~s~~~~~~~~~~~~~~~~~gN~~~n~~~e~~~ 109 (329)
T 3o47_A 41 FECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGNAKFREFLESQE 109 (329)
T ss_dssp TTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCCCCHHHHHHHHHCCHHHHHHHHHTCS
T ss_pred CCCCCCCCCeEEecCCEEEChhhhhhhcccCCCcCEEeeccccCCCHHHHHHHHHhCcHHHHHHHHhcC
Confidence 699999999999999999999999999999999999999999999999999999999999999999885
No 15
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=90.28 E-value=0.36 Score=37.28 Aligned_cols=31 Identities=29% Similarity=0.372 Sum_probs=26.2
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 112 LNQQLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 112 ~~~~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
-...|+.||+.|++..+..||..|||+|..+
T Consensus 25 ~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~ 55 (337)
T 4g8k_A 25 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQE 55 (337)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHTCCTTCCC
T ss_pred CChHHHHHHHcCCHHHHHHHHHCCCCCCccC
Confidence 3467899999999999999999999998764
No 16
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=85.42 E-value=0.84 Score=28.37 Aligned_cols=28 Identities=36% Similarity=0.388 Sum_probs=18.5
Q ss_pred HHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 115 QLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 115 ~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
.|+.|+..+++..+..|+..|+|+|..|
T Consensus 5 ~L~~A~~~~~~~~v~~Ll~~g~~~n~~d 32 (93)
T 1n0q_A 5 PLHLAARNGHLEVVKLLLEAGADVNAKD 32 (93)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCTTCCC
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCcccC
Confidence 3566666777766666677777776654
No 17
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=84.67 E-value=1.2 Score=28.84 Aligned_cols=30 Identities=23% Similarity=0.226 Sum_probs=19.1
Q ss_pred HHHHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 113 NQQLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 113 ~~~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
...|+.|+..+++..+..|+..|+++|..|
T Consensus 25 ~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d 54 (110)
T 2zgd_A 25 GKKLLEAARAGQDDEVRILMANGADVAAKD 54 (110)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCTTCCC
T ss_pred chHHHHHHHcCCHHHHHHHHHcCCCCCccC
Confidence 345666666666666666666666666544
No 18
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=82.15 E-value=1.5 Score=27.15 Aligned_cols=28 Identities=36% Similarity=0.388 Sum_probs=25.3
Q ss_pred HHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 115 QLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 115 ~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
.|+.|+..+++..+..|+..|+|+|..|
T Consensus 38 ~L~~A~~~~~~~~v~~Ll~~ga~~~~~d 65 (93)
T 1n0q_A 38 PLHLAARNGHLEVVKLLLEAGADVNAKD 65 (93)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCccC
Confidence 6889999999999999999999999876
No 19
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=80.63 E-value=1.8 Score=27.83 Aligned_cols=28 Identities=32% Similarity=0.348 Sum_probs=25.7
Q ss_pred HHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 115 QLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 115 ~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
.|+.|+..+++..+..|+..|+++|..|
T Consensus 60 pLh~A~~~~~~~~v~~Ll~~ga~~~~~d 87 (110)
T 2zgd_A 60 PLHLAARNGHLEVVKLLLEAGADVXAQD 87 (110)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCccccc
Confidence 6899999999999999999999999775
No 20
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=78.83 E-value=2 Score=30.44 Aligned_cols=28 Identities=29% Similarity=0.317 Sum_probs=24.6
Q ss_pred HHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 115 QLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 115 ~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
.|+.|+..+++..+..||..|+|+|..|
T Consensus 73 pLh~A~~~g~~~~v~~Ll~~gadvn~~d 100 (169)
T 4gpm_A 73 PLHHAAENGHKEVVKLLISKGADVNAKD 100 (169)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred HHHHHHHcCCHHHHHHHHHCcCCCCCCC
Confidence 5888999999999888999999999876
No 21
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=77.41 E-value=1.8 Score=27.75 Aligned_cols=28 Identities=32% Similarity=0.451 Sum_probs=16.3
Q ss_pred HHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 115 QLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 115 ~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
.|+.|+..+++..+..|+..|+++|..|
T Consensus 12 ~L~~A~~~~~~~~~~~Ll~~g~~~~~~d 39 (115)
T 2l6b_A 12 PLHNAAKNGHAEEVKKLLSKGADVNARS 39 (115)
T ss_dssp HHHHHHHHTCHHHHHHHTTTTCCSSCCC
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCcC
Confidence 4555666666666655666666665543
No 22
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=76.29 E-value=2.5 Score=27.38 Aligned_cols=28 Identities=32% Similarity=0.251 Sum_probs=20.7
Q ss_pred HHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 115 QLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 115 ~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
.|+.|+..++...+..|+..|+|+|..|
T Consensus 43 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~d 70 (123)
T 3aaa_C 43 PLHYAADCGQLEILEFLLLKGADINAPD 70 (123)
T ss_dssp HHHHHHHTTCHHHHHHHHTTTCCTTCCC
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCcCC
Confidence 5777777777777777777788777654
No 23
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=75.70 E-value=2.8 Score=29.67 Aligned_cols=28 Identities=29% Similarity=0.326 Sum_probs=25.9
Q ss_pred HHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 115 QLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 115 ~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
.|+.|+..+++..+..|+..|+|+|..|
T Consensus 106 pLh~A~~~g~~~~v~~Ll~~gad~~~~d 133 (169)
T 4gpm_A 106 PLHHAAENGHKEVVKLLISKGADVNTSD 133 (169)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCccccC
Confidence 6899999999999999999999999876
No 24
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=75.27 E-value=2.1 Score=32.85 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=16.6
Q ss_pred HHHHhhhcCCHHHHHHHHHcCCCCCCc
Q psy13622 115 QLHSSVRTSNLDTSLRLLSQGADPNYF 141 (143)
Q Consensus 115 ~l~~av~~~~~~~~~~ll~~Ga~~n~~ 141 (143)
.|+.|++.++...+-.||.+|||+|+-
T Consensus 304 ~L~~A~~~~~~~iv~~Ll~~GA~~d~~ 330 (337)
T 4g8k_A 304 LVMTARRNYDHSLVKVLLSHGAKEDFH 330 (337)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCC---
T ss_pred HHHHHHHcCCHHHHHHHHHCcCCCCCC
Confidence 456667777776666677777777753
No 25
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=75.23 E-value=2.7 Score=31.89 Aligned_cols=28 Identities=25% Similarity=0.235 Sum_probs=14.5
Q ss_pred HHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 115 QLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 115 ~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
.|+.|+..|++..+-.||..|||+|..|
T Consensus 188 ~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d 215 (269)
T 4b93_B 188 ALHEAVIEKHVFVVELLLLHGASVQVLN 215 (269)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCSCCCC
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCCCCcC
Confidence 3455555555555555555555555443
No 26
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=75.03 E-value=3 Score=27.59 Aligned_cols=28 Identities=29% Similarity=0.254 Sum_probs=21.9
Q ss_pred HHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 115 QLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 115 ~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
.|+.|+..+++..+..|+..|+|+|..|
T Consensus 50 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~d 77 (136)
T 2jab_A 50 PLYLATAHGHLEIVEVLLKNGADVNAVD 77 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCTTCCC
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCcCC
Confidence 5777888888888878888888887655
No 27
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=74.29 E-value=3 Score=31.05 Aligned_cols=29 Identities=31% Similarity=0.486 Sum_probs=21.8
Q ss_pred HHHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 114 QQLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 114 ~~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
..|+.|+..|++..+..||..|+|+|..|
T Consensus 42 t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~ 70 (299)
T 1s70_B 42 AVFLAACSSGDTEEVLRLLERGADINYAN 70 (299)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHCCCTTCBC
T ss_pred cHHHHHHHcCCHHHHHHHHHcCCCCcccC
Confidence 46777777888877777777788777654
No 28
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=73.97 E-value=3.4 Score=26.72 Aligned_cols=29 Identities=31% Similarity=0.251 Sum_probs=26.0
Q ss_pred HHHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 114 QQLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 114 ~~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
..|+.|+..++...+..|+..|+|+|..|
T Consensus 75 tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~ 103 (123)
T 3aaa_C 75 TPLLSAVYEGHVSCVKLLLSKGADKTVKG 103 (123)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCTTCCC
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCCCcC
Confidence 36899999999999999999999999775
No 29
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=72.96 E-value=3.1 Score=28.18 Aligned_cols=28 Identities=29% Similarity=0.279 Sum_probs=25.3
Q ss_pred HHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 115 QLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 115 ~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
.|+.|+..+++..+..|+..|+++|..|
T Consensus 81 pL~~A~~~~~~~~v~~Ll~~ga~~~~~d 108 (156)
T 1bi7_B 81 PVHDAAREGFLDTLVVLHRAGARLDVRD 108 (156)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTCCSSCCC
T ss_pred HHHHHHHCCCHHHHHHHHHcCCCCcccC
Confidence 6889999999999999999999999765
No 30
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=72.61 E-value=3.8 Score=27.03 Aligned_cols=29 Identities=28% Similarity=0.314 Sum_probs=26.0
Q ss_pred HHHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 114 QQLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 114 ~~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
..|+.|+..+++..+..|+..|+|+|..|
T Consensus 80 t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d 108 (136)
T 1d9s_A 80 RPVHDAAREGFLDTLVVLHRAGARLDVCD 108 (136)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTCCCCCCCS
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCCccC
Confidence 36899999999999999999999999875
No 31
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=71.84 E-value=4 Score=26.95 Aligned_cols=29 Identities=31% Similarity=0.306 Sum_probs=25.9
Q ss_pred HHHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 114 QQLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 114 ~~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
..|+.|+..++...+..|+..|+++|..|
T Consensus 82 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~ 110 (136)
T 2jab_A 82 TPLHLAAFIGHLEIAEVLLKHGADVNAQD 110 (136)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCTTCCC
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCcCcC
Confidence 36899999999999999999999998765
No 32
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=71.49 E-value=4.4 Score=26.63 Aligned_cols=29 Identities=31% Similarity=0.398 Sum_probs=25.8
Q ss_pred HHHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 114 QQLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 114 ~~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
..|+.|+..++...+..|+..|+|+|..|
T Consensus 78 t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~ 106 (137)
T 3c5r_A 78 SPLHDAAKNGHVDIVKLLLSYGASRNAVN 106 (137)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Confidence 47899999999999999999999999775
No 33
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=71.27 E-value=2.5 Score=26.95 Aligned_cols=28 Identities=29% Similarity=0.338 Sum_probs=19.8
Q ss_pred HHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 115 QLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 115 ~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
.|+.|+..+++..+..|+..|+++|..|
T Consensus 45 ~L~~A~~~~~~~~~~~Ll~~g~~~~~~d 72 (115)
T 2l6b_A 45 PLHLAAKNGHAEIVKLLLAKGADVNARS 72 (115)
T ss_dssp TTHHHHTTTCHHHHHHHTTTTCCTTCCC
T ss_pred HHHHHHHcCcHHHHHHHHHcCCCCcccC
Confidence 4667777777777777777777777654
No 34
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=70.66 E-value=4.6 Score=26.97 Aligned_cols=29 Identities=38% Similarity=0.394 Sum_probs=25.7
Q ss_pred HHHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 114 QQLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 114 ~~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
..|+.|+..++...+..|+..|+++|..|
T Consensus 70 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~ 98 (156)
T 1bd8_A 70 SPVHDAARTGFLDTLKVLVEHGADVNVPD 98 (156)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCSCCCC
T ss_pred CHHHHHHHcCcHHHHHHHHHcCCCCCCcC
Confidence 36899999999999999999999999765
No 35
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=69.71 E-value=4.4 Score=27.60 Aligned_cols=28 Identities=29% Similarity=0.306 Sum_probs=22.0
Q ss_pred HHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 115 QLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 115 ~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
.|+.|+..+++..+..|+..|+++|..|
T Consensus 39 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~ 66 (172)
T 3v30_A 39 PLIWASAFGEIETVRFLLEWGADPHILA 66 (172)
T ss_dssp HHHHHHHTTCHHHHHHHHHHTCCTTCCC
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCchhhc
Confidence 5777888888888888888888887654
No 36
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=69.37 E-value=4.4 Score=29.02 Aligned_cols=28 Identities=21% Similarity=0.182 Sum_probs=25.4
Q ss_pred HHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 115 QLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 115 ~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
.|+.|+..+++..+..|+..|+++|..|
T Consensus 76 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~ 103 (222)
T 3ehr_A 76 PLHEAAKRGNLSWLRECLDNRVGVNGLD 103 (222)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCTTCCC
T ss_pred ccccccccCcHHHHHHHHhCCCCccccC
Confidence 6899999999999999999999999765
No 37
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=69.16 E-value=4.6 Score=28.07 Aligned_cols=28 Identities=25% Similarity=0.417 Sum_probs=24.9
Q ss_pred HHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 115 QLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 115 ~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
.|+.|+..+++..+..|+..|+|+|..|
T Consensus 42 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~ 69 (201)
T 3hra_A 42 PLNIAVHNNDIEIAKALIDRGADINLQN 69 (201)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCTTCCC
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCCC
Confidence 6888999999999999999999998765
No 38
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=68.96 E-value=5.1 Score=27.40 Aligned_cols=28 Identities=32% Similarity=0.331 Sum_probs=21.8
Q ss_pred HHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 115 QLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 115 ~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
.|+.|+..+++..+..|+..|+++|..|
T Consensus 50 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~ 77 (169)
T 2y1l_E 50 PLHLAAFNGHLEIVEVLLKNGADVNAVD 77 (169)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCccC
Confidence 5777888888888888888888887654
No 39
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=68.77 E-value=5.1 Score=27.60 Aligned_cols=28 Identities=25% Similarity=0.251 Sum_probs=20.7
Q ss_pred HHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 115 QLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 115 ~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
.|+.|+..+++..+..|+..|+++|..|
T Consensus 42 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~ 69 (179)
T 3f6q_A 42 PLHWACREGRSAVVEMLIMRGARINVMN 69 (179)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred HHHHHHHcCcHHHHHHHHHcCCCCCCcC
Confidence 5677777777777777777777777654
No 40
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=68.70 E-value=5.3 Score=27.00 Aligned_cols=28 Identities=25% Similarity=0.209 Sum_probs=20.6
Q ss_pred HHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 115 QLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 115 ~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
.|+.|+..+++..+..|+..|+++|..|
T Consensus 45 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~ 72 (165)
T 3twr_A 45 PLHFAAGYNRVSVVEYLLQHGADVHAKD 72 (165)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred HHHHHHHcChHHHHHHHHhcCCCCCccC
Confidence 5677777777777777777777777654
No 41
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=68.58 E-value=4.7 Score=28.81 Aligned_cols=29 Identities=17% Similarity=0.097 Sum_probs=26.3
Q ss_pred HHHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 114 QQLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 114 ~~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
..|+.|+..++...+..|+..|+|+|..|
T Consensus 123 t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d 151 (232)
T 2rfa_A 123 HPLSFAACVGSEEIVRLLIEHGADIRAQD 151 (232)
T ss_dssp SHHHHHHHHTCHHHHHHHHHTTCCTTCCC
T ss_pred CHHHHHHHcCCHHHHHHHHHCCCCCCCCC
Confidence 37899999999999999999999999876
No 42
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=68.32 E-value=5.1 Score=26.83 Aligned_cols=28 Identities=36% Similarity=0.302 Sum_probs=24.8
Q ss_pred HHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 115 QLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 115 ~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
.|+.|+..+++..+..|+..|+++|..|
T Consensus 73 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~ 100 (162)
T 1ihb_A 73 VIHDAARAGFLDTLQTLLEFQADVNIED 100 (162)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCTTCCC
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCcC
Confidence 6889999999999999999999998765
No 43
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=68.31 E-value=4.7 Score=29.42 Aligned_cols=28 Identities=21% Similarity=0.173 Sum_probs=25.9
Q ss_pred HHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 115 QLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 115 ~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
.|+.|+..+++..+..||..|+|+|..+
T Consensus 96 ~L~~A~~~g~~~~v~~Ll~~ga~~~~~~ 123 (260)
T 3jxi_A 96 ALHIAIERRCKHYVELLVEKGADVHAQA 123 (260)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred HHHHHHHcCCHHHHHHHHhCCCCcCccc
Confidence 6899999999999999999999999875
No 44
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=68.30 E-value=4.1 Score=29.94 Aligned_cols=29 Identities=17% Similarity=0.149 Sum_probs=22.9
Q ss_pred HHHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 114 QQLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 114 ~~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
..|+.|+..|++..+..|+..|+|+|..|
T Consensus 23 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d 51 (229)
T 2vge_A 23 VLLLDAALTGELEVVQQAVKEMNDPSQPN 51 (229)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHSSCTTCCC
T ss_pred HHHHHHHHcCCHHHHHHHHhcCCCCCCCC
Confidence 46788888888888888888888887765
No 45
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=68.18 E-value=5.5 Score=26.98 Aligned_cols=28 Identities=25% Similarity=0.299 Sum_probs=22.6
Q ss_pred HHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 115 QLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 115 ~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
.|+.|+..+++..+..|+..|+++|..|
T Consensus 39 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~ 66 (167)
T 3v31_A 39 PLMWAAAHGQIAVVEFLLQNGADPQLLG 66 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred HHHHHHHCCCHHHHHHHHHcCCCCCCcC
Confidence 5788888888888888888888888654
No 46
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=67.48 E-value=4.8 Score=31.12 Aligned_cols=29 Identities=24% Similarity=0.281 Sum_probs=26.6
Q ss_pred HHHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 114 QQLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 114 ~~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
..|+.|+..+++..+..||..|+|+|..|
T Consensus 133 TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d 161 (327)
T 1sw6_A 133 TPLHWLTSIANLELVKHLVKHGSNRLYGD 161 (327)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTBCC
T ss_pred cHHHHHHHcCCHHHHHHHHHcCCCCCCcC
Confidence 47999999999999999999999999876
No 47
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=67.39 E-value=5.7 Score=26.04 Aligned_cols=28 Identities=25% Similarity=0.143 Sum_probs=25.3
Q ss_pred HHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 115 QLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 115 ~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
.|+.|+..++...+..|+..|+++|..|
T Consensus 46 ~L~~A~~~~~~~~~~~Ll~~g~~~~~~~ 73 (137)
T 3c5r_A 46 PLHEACNHGHLKVVELLLQHKALVNTTG 73 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred HHHHHHHcCCHHHHHHHHHcCCcccCcC
Confidence 6889999999999999999999999765
No 48
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=67.33 E-value=5.4 Score=29.09 Aligned_cols=29 Identities=24% Similarity=0.313 Sum_probs=26.3
Q ss_pred HHHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 114 QQLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 114 ~~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
..|+.|+..+++..+..|+..|+|+|..|
T Consensus 92 t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~ 120 (256)
T 2etb_A 92 SALHIAIEKRSLQCVKLLVENGADVHLRA 120 (256)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCCccc
Confidence 36899999999999999999999999875
No 49
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=67.01 E-value=5.3 Score=29.52 Aligned_cols=29 Identities=24% Similarity=0.296 Sum_probs=26.4
Q ss_pred HHHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 114 QQLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 114 ~~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
..|+.|+..+++..+..||..|+|+|..+
T Consensus 103 tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~ 131 (273)
T 2pnn_A 103 TALHIAIERRNMTLVTLLVENGADVQAAA 131 (273)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCCB
T ss_pred CHHHHHHHcCCHHHHHHHHHCCCCcCccc
Confidence 37899999999999999999999999875
No 50
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=66.94 E-value=5 Score=30.59 Aligned_cols=29 Identities=24% Similarity=0.114 Sum_probs=24.0
Q ss_pred HHHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 114 QQLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 114 ~~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
..|+.|+..++...+..||..|||+|..|
T Consensus 207 TpLh~A~~~g~~~~v~~Ll~~gad~~~~d 235 (278)
T 1dcq_A 207 TALHYCCLTDNAECLKLLLRGKASIEIAN 235 (278)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCCCcc
Confidence 36888888888888888888899888765
No 51
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=66.64 E-value=6.1 Score=26.65 Aligned_cols=28 Identities=29% Similarity=0.408 Sum_probs=23.8
Q ss_pred HHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 115 QLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 115 ~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
.|+.|+..++...+..|+..|+|+|..|
T Consensus 111 ~L~~A~~~~~~~~v~~Ll~~ga~~~~~~ 138 (165)
T 3twr_A 111 PLHEAAAKGKYEICKLLLQHGADPTKKN 138 (165)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCcccC
Confidence 6788888999888888888899988765
No 52
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=66.30 E-value=6.9 Score=24.66 Aligned_cols=28 Identities=36% Similarity=0.388 Sum_probs=24.8
Q ss_pred HHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 115 QLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 115 ~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
.|+.|+..++...+..|+..|+++|..|
T Consensus 71 ~l~~A~~~~~~~~~~~Ll~~g~~~~~~~ 98 (126)
T 1n0r_A 71 PLHLAARNGHLEVVKLLLEAGADVNAKD 98 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred HHHHHHHcChHHHHHHHHHcCCCCcccC
Confidence 6889999999999999999999998765
No 53
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=66.28 E-value=5.1 Score=30.94 Aligned_cols=29 Identities=31% Similarity=0.318 Sum_probs=26.4
Q ss_pred HHHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 114 QQLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 114 ~~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
..|+.|+..++...+..||..|||+|..|
T Consensus 285 TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d 313 (327)
T 1sw6_A 285 TCLNIAARLGNISIVDALLDYGADPFIAN 313 (327)
T ss_dssp CHHHHHHHHCCHHHHHHHHHTTCCTTCCC
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCcccC
Confidence 36899999999999999999999999876
No 54
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=66.12 E-value=5.8 Score=28.94 Aligned_cols=27 Identities=33% Similarity=0.367 Sum_probs=14.4
Q ss_pred HHHHhhhcCCHHHHHHHHHcCCCCCCc
Q psy13622 115 QLHSSVRTSNLDTSLRLLSQGADPNYF 141 (143)
Q Consensus 115 ~l~~av~~~~~~~~~~ll~~Ga~~n~~ 141 (143)
.|+.|+..+++..+..||..|+|+|..
T Consensus 195 pL~~A~~~~~~~~v~~Ll~~gad~~~~ 221 (282)
T 1oy3_D 195 PLHLAVEAQAASVLELLLKAGADPTAR 221 (282)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCccc
Confidence 355555555555555555555555544
No 55
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=66.07 E-value=5.8 Score=29.12 Aligned_cols=28 Identities=25% Similarity=0.252 Sum_probs=23.8
Q ss_pred HHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 115 QLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 115 ~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
.|+.|+..+++..+..|+..|+|+|..|
T Consensus 57 pLh~A~~~g~~~~v~~Ll~~ga~~n~~d 84 (229)
T 2vge_A 57 ALHNAICGANYSIVDFLITAGANVNSPD 84 (229)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCCCCCC
Confidence 6888888899888888888899988765
No 56
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=65.91 E-value=6.4 Score=26.75 Aligned_cols=29 Identities=28% Similarity=0.256 Sum_probs=24.8
Q ss_pred HHHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 114 QQLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 114 ~~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
..|+.|+..++...+..|+..|+|+|..|
T Consensus 104 t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~ 132 (172)
T 3v30_A 104 TPLLYAVRGNHVKCVEALLARGADLTTEA 132 (172)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCccccC
Confidence 36888999999999988999999998765
No 57
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=65.89 E-value=6.2 Score=24.87 Aligned_cols=28 Identities=36% Similarity=0.388 Sum_probs=25.1
Q ss_pred HHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 115 QLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 115 ~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
.|+.|+..++...+..|+..|+++|..|
T Consensus 38 ~L~~A~~~~~~~~~~~Ll~~g~~~~~~~ 65 (126)
T 1n0r_A 38 PLHLAARNGHLEVVKLLLEAGADVNAKD 65 (126)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCTTCCC
T ss_pred HHHHHHHcCcHHHHHHHHHcCCCCcccC
Confidence 6889999999999999999999998765
No 58
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=65.78 E-value=5.4 Score=26.72 Aligned_cols=28 Identities=29% Similarity=0.266 Sum_probs=22.0
Q ss_pred HHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 115 QLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 115 ~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
.|+.|+..++...+..|+..|+|+|..|
T Consensus 70 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~ 97 (153)
T 1awc_B 70 PLHMAASEGHANIVEVLLKHGADVNAKD 97 (153)
T ss_dssp HHHHHHHHTCHHHHHHHHTTTCCTTCCC
T ss_pred HHHHHHHcChHHHHHHHHHcCCCCCCCC
Confidence 5777888888888878888888887765
No 59
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=65.66 E-value=5.2 Score=29.23 Aligned_cols=28 Identities=21% Similarity=0.201 Sum_probs=22.6
Q ss_pred HHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 115 QLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 115 ~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
.|+.|+..+++..+..|+..|+|+|..|
T Consensus 73 ~L~~A~~~g~~~~v~~Ll~~ga~~~~~d 100 (239)
T 1ycs_B 73 ALHNAVCAGHTEIVKFLVQFGVNVNAAD 100 (239)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTCCTTCCC
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCccC
Confidence 6788888888888888888888888765
No 60
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=65.53 E-value=6.2 Score=27.17 Aligned_cols=28 Identities=29% Similarity=0.266 Sum_probs=24.1
Q ss_pred HHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 115 QLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 115 ~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
.|+.|+..++...+..|+..|+++|..|
T Consensus 75 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~d 102 (179)
T 3f6q_A 75 PLHLAASHGHRDIVQKLLQYKADINAVN 102 (179)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCccC
Confidence 6888899999988888889999998765
No 61
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=65.28 E-value=8.2 Score=29.75 Aligned_cols=31 Identities=23% Similarity=0.381 Sum_probs=24.9
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 112 LNQQLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 112 ~~~~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
-...|+.|+..|++..+..||..|+|+|..|
T Consensus 20 g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d 50 (364)
T 3ljn_A 20 NMEKIHVAARKGQTDEVRRLIETGVSPTIQN 50 (364)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCTTCCC
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCccccC
Confidence 4567888888888888888888888888765
No 62
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=65.01 E-value=3.9 Score=29.96 Aligned_cols=30 Identities=20% Similarity=0.172 Sum_probs=27.1
Q ss_pred HHHHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 113 NQQLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 113 ~~~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
...|+.|+..+++..+..||..|+|+|..|
T Consensus 38 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d 67 (239)
T 1ycs_B 38 LALLLDSSLEGEFDLVQRIIYEVDDPSLPN 67 (239)
T ss_dssp HHHHHHHHHHTCHHHHHHHTSTTSSCCCCC
T ss_pred hHHHHHHHHcCCHHHHHHHHHcCCCCCCcC
Confidence 457999999999999999999999999876
No 63
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=65.00 E-value=7 Score=26.12 Aligned_cols=29 Identities=21% Similarity=0.195 Sum_probs=25.8
Q ss_pred HHHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 114 QQLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 114 ~~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
..|+.|+..++...+..|+..|+|+|..|
T Consensus 102 t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~ 130 (153)
T 1awc_B 102 TALHWATEHNHQEVVELLIKYGADVHTQS 130 (153)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCccccC
Confidence 36889999999999999999999999765
No 64
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=64.87 E-value=6 Score=27.54 Aligned_cols=28 Identities=18% Similarity=-0.045 Sum_probs=23.5
Q ss_pred HHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 115 QLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 115 ~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
.|+.|+..++...+-.|+..|+++|..|
T Consensus 79 ~L~~A~~~~~~~~v~~Ll~~ga~~~~~~ 106 (183)
T 3deo_A 79 ALLFVAGLGSDKCVRLLAEAGADLDHRD 106 (183)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCTTCCC
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCcCC
Confidence 6788888899888888888899988765
No 65
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=64.69 E-value=7 Score=26.68 Aligned_cols=29 Identities=31% Similarity=0.275 Sum_probs=23.4
Q ss_pred HHHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 114 QQLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 114 ~~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
..|+.|+..++...+..|+..|+|+|..|
T Consensus 115 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~ 143 (169)
T 2y1l_E 115 TPLHLAAMFGHLEIVEVLLKNGADVNAQD 143 (169)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCCCcC
Confidence 36788888888888888888888888765
No 66
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=64.41 E-value=6.4 Score=27.39 Aligned_cols=29 Identities=21% Similarity=0.124 Sum_probs=26.0
Q ss_pred HHHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 114 QQLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 114 ~~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
..|+.|+..++...+..|+..|+|+|..|
T Consensus 112 tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d 140 (183)
T 3deo_A 112 TALHMAAGYVRPEVVEALVELGADIEVED 140 (183)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHTCCTTCCC
T ss_pred CHHHHHHhcCcHHHHHHHHHcCCCCcCCC
Confidence 36889999999999999999999999776
No 67
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=64.11 E-value=6.5 Score=29.56 Aligned_cols=29 Identities=28% Similarity=0.190 Sum_probs=26.0
Q ss_pred HHHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 114 QQLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 114 ~~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
..|+.|+..++...+-.||..|+|+|..|
T Consensus 185 tpLh~A~~~g~~~~v~~Ll~~gad~n~~d 213 (276)
T 4hbd_A 185 TALMLAVSHGRVDVVKALLACEADVNVQD 213 (276)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred CHHHHHHHcCCHHHHHHHHhCCCCCCCCC
Confidence 46899999999999999999999999876
No 68
>1u5k_A Hypothetical protein; OBD-fold, Zn-binding, recombination,replication; 2.00A {Deinococcus radiodurans} SCOP: b.40.4.13 g.45.1.2 PDB: 1w3s_A 2v1c_C
Probab=63.93 E-value=7.6 Score=29.32 Aligned_cols=47 Identities=23% Similarity=0.465 Sum_probs=34.3
Q ss_pred CCCCCCCCeeecccceeeccchhhhhhcCCCCcceeeeCCCCCCChHHHHHHHhhccCchhHH
Q psy13622 2 SSRAADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSL 64 (143)
Q Consensus 2 DCga~~P~was~n~gvfiC~~CsgiHR~lg~~iskVks~~ld~w~~~~v~~~~~~GN~~~n~~ 64 (143)
.||.++..+.|...|.++|..|..-+ ..+++++..|..+-......+
T Consensus 155 ~cg~~~~~~fs~~~Gg~~c~~~~~~~----------------~l~~~~l~~l~~l~~~~~~~~ 201 (244)
T 1u5k_A 155 RCGAPDPEHPDPLGGQLLCSKCAALP----------------PYPPAVLDFLRHAVRRTVRAS 201 (244)
T ss_dssp TTCCBSCCEECTTTSSEECTTTCSSC----------------CCCHHHHHHHHHTTTSCHHHH
T ss_pred cCCCCCCCcEecccCEEECcccCCCC----------------CCCHHHHHHHHHHHhCCHHHH
Confidence 48888668899999999999995321 467888888877755544333
No 69
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=63.34 E-value=7.3 Score=27.48 Aligned_cols=28 Identities=39% Similarity=0.413 Sum_probs=24.6
Q ss_pred HHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 115 QLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 115 ~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
.|+.|+..+++..+..|+..|+++|..|
T Consensus 28 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~ 55 (223)
T 2f8y_A 28 ALHLAARYSRSDAAKRLLEASADANIQD 55 (223)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred hHHHHHHcCCHHHHHHHHHcCCCCCCcC
Confidence 6888999999999999999999998765
No 70
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=63.22 E-value=6.3 Score=28.31 Aligned_cols=28 Identities=39% Similarity=0.337 Sum_probs=20.0
Q ss_pred HHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 115 QLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 115 ~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
.|+.|+..++...+..|+..|+|+|..|
T Consensus 154 pL~~A~~~~~~~~v~~Ll~~ga~~~~~~ 181 (236)
T 1ikn_D 154 ALHLAVDLQNPDLVSLLLKCGADVNRVT 181 (236)
T ss_dssp HHHHHHHTTCHHHHHHHHTTTCCSCCCC
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCccc
Confidence 5677777777777777777777777654
No 71
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=62.89 E-value=8 Score=26.11 Aligned_cols=28 Identities=29% Similarity=0.320 Sum_probs=24.3
Q ss_pred HHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 115 QLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 115 ~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
.|+.|+..++...+..|+..|+|+|..|
T Consensus 105 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~ 132 (167)
T 3v31_A 105 PLLYAVHGNHVKCVKMLLESGADPTIET 132 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCcC
Confidence 6888999999999988999999998765
No 72
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=62.66 E-value=6.8 Score=28.56 Aligned_cols=28 Identities=21% Similarity=0.125 Sum_probs=25.6
Q ss_pred HHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 115 QLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 115 ~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
.|+.|+..+++..+..|+..|+++|..|
T Consensus 48 ~L~~A~~~g~~~~v~~Ll~~ga~~~~~~ 75 (282)
T 1oy3_D 48 ALHLAAILGEASTVEKLYAAGAGVLVAE 75 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCSSCCC
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCCC
Confidence 6889999999999999999999999765
No 73
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=62.13 E-value=7.2 Score=27.82 Aligned_cols=29 Identities=28% Similarity=0.298 Sum_probs=22.2
Q ss_pred HHHHHhhhcCCHH----HHHHHHHcCCCCCCcC
Q psy13622 114 QQLHSSVRTSNLD----TSLRLLSQGADPNYFY 142 (143)
Q Consensus 114 ~~l~~av~~~~~~----~~~~ll~~Ga~~n~~~ 142 (143)
..|+.|+..++.. .+-.||..|||+|..|
T Consensus 40 T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d 72 (186)
T 3t8k_A 40 NILYDVLRNNNDEARYKISMFLINKGADIKSRT 72 (186)
T ss_dssp THHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCC
T ss_pred CHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCC
Confidence 4688899988754 4556778899999865
No 74
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=61.68 E-value=4.6 Score=30.54 Aligned_cols=28 Identities=21% Similarity=0.120 Sum_probs=25.5
Q ss_pred HHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 115 QLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 115 ~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
.|+.|+..|+...+..||..|+|+|..|
T Consensus 155 pL~~A~~~g~~~~v~~Ll~~gadvn~~~ 182 (269)
T 4b93_B 155 PLIYACSGGHHELVALLLQHGASINASN 182 (269)
T ss_dssp HHHHHHHTTCGGGHHHHHHTTCCTTCBC
T ss_pred HHHHHHHCCCHHHHHHHHHCCCCCCccc
Confidence 5889999999999999999999999865
No 75
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=61.40 E-value=6.9 Score=28.34 Aligned_cols=28 Identities=18% Similarity=0.024 Sum_probs=18.1
Q ss_pred HHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 115 QLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 115 ~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
.|..|++.++...+-.|+..|||+|..|
T Consensus 256 ~l~~A~~~~~~~i~~~Ll~~Ga~~~~~d 283 (285)
T 1wdy_A 256 ALLLAVELKLKKIAELLCKRGASTDCGD 283 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSSCSCCSS
T ss_pred HHHHHHHcCcHHHHHHHHHcCCCCCccc
Confidence 4556666666666666666677766654
No 76
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=61.28 E-value=6.8 Score=27.97 Aligned_cols=29 Identities=24% Similarity=0.286 Sum_probs=25.3
Q ss_pred HHHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 114 QQLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 114 ~~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
..|+.|+..++...+..||..|+++|..|
T Consensus 142 tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~ 170 (222)
T 3ehr_A 142 TALHAAAWKGYADIVQLLLAKGARTDLRN 170 (222)
T ss_dssp CHHHHHHHHTCHHHHHHHHHHTCCSCCCC
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCcccc
Confidence 37888999999999999999999998765
No 77
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=60.87 E-value=8.1 Score=28.60 Aligned_cols=27 Identities=19% Similarity=0.123 Sum_probs=14.0
Q ss_pred HHHHhhhcCCHHHHHHHHHcCCCCCCc
Q psy13622 115 QLHSSVRTSNLDTSLRLLSQGADPNYF 141 (143)
Q Consensus 115 ~l~~av~~~~~~~~~~ll~~Ga~~n~~ 141 (143)
.|+.|+..+++..+..|+..|+|+|..
T Consensus 202 ~L~~A~~~g~~~~v~~Ll~~g~d~~~~ 228 (299)
T 1s70_B 202 ALHVAAAKGYTEVLKLLIQARYDVNIK 228 (299)
T ss_dssp HHHHHHHHTCHHHHHHHHTTTCCTTCC
T ss_pred HHHHHHHCCcHHHHHHHHHcCCCCCCc
Confidence 355555555555555555555555544
No 78
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=60.78 E-value=8.6 Score=27.26 Aligned_cols=28 Identities=21% Similarity=0.223 Sum_probs=16.3
Q ss_pred HHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 115 QLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 115 ~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
.|+.|+..+++..+..|+..|+|+|..|
T Consensus 175 ~L~~A~~~~~~~~v~~Ll~~ga~~~~~~ 202 (231)
T 3aji_A 175 PLHLACDEERVEEAKFLVTQGASIYIEN 202 (231)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCSCCCC
T ss_pred HHHHHHHCCCHHHHHHHHHCCCCCCCCC
Confidence 4555666666666666666666665443
No 79
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=60.70 E-value=8.1 Score=27.46 Aligned_cols=27 Identities=30% Similarity=0.303 Sum_probs=13.9
Q ss_pred HHHHhhhcCCHHHHHHHHHcCCCCCCc
Q psy13622 115 QLHSSVRTSNLDTSLRLLSQGADPNYF 141 (143)
Q Consensus 115 ~l~~av~~~~~~~~~~ll~~Ga~~n~~ 141 (143)
.|+.|+..++...+..|+..|+|+|..
T Consensus 186 ~L~~A~~~~~~~~v~~Ll~~ga~~~~~ 212 (241)
T 1k1a_A 186 ALHSASGRGLLPLVRTLVRSGADSSLK 212 (241)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCTTCC
T ss_pred HHHHHHHcCCHHHHHHHHhcCCCCCCc
Confidence 344555555555555555555555543
No 80
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=60.60 E-value=7.5 Score=28.63 Aligned_cols=28 Identities=18% Similarity=-0.045 Sum_probs=23.9
Q ss_pred HHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 115 QLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 115 ~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
.|+.|+..+++..+..|+..|+|+|..|
T Consensus 80 ~L~~A~~~g~~~~v~~Ll~~ga~~~~~~ 107 (244)
T 3ui2_A 80 ALLFVAGLGSDKCVRLLAEAGADLDHRD 107 (244)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCTTCCC
T ss_pred HHHHHHHCCCHHHHHHHHHcCCCCCcCC
Confidence 6888888999988888888899998765
No 81
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=60.53 E-value=8 Score=28.25 Aligned_cols=28 Identities=39% Similarity=0.413 Sum_probs=25.4
Q ss_pred HHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 115 QLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 115 ~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
.|+.|+..+++..+..|+..|+++|..|
T Consensus 60 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~ 87 (253)
T 1yyh_A 60 ALHLAARYSRSDAAKRLLEASADANIQD 87 (253)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCCC
Confidence 6899999999999999999999999765
No 82
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=60.45 E-value=8.4 Score=28.33 Aligned_cols=29 Identities=21% Similarity=0.124 Sum_probs=26.1
Q ss_pred HHHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 114 QQLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 114 ~~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
..|+.|+..++...+..|+..|+|+|..|
T Consensus 113 t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d 141 (244)
T 3ui2_A 113 TALHMAAGYVRPEVVEALVELGADIEVED 141 (244)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred CHHHHHHHcCCHHHHHHHHHCCCCCCCCC
Confidence 37899999999999999999999999765
No 83
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=59.29 E-value=8.6 Score=26.67 Aligned_cols=28 Identities=21% Similarity=0.147 Sum_probs=20.3
Q ss_pred HHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 115 QLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 115 ~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
.|+.|+..++...+..|+..|+|+|..|
T Consensus 137 ~L~~A~~~~~~~~v~~Ll~~ga~~~~~~ 164 (192)
T 2rfm_A 137 PLIVASKYGRSEIVKKLLELGADISARD 164 (192)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCTTCBC
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCCCCcC
Confidence 5677777777777777777777777654
No 84
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=58.98 E-value=8.8 Score=29.57 Aligned_cols=28 Identities=21% Similarity=0.026 Sum_probs=20.1
Q ss_pred HHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 115 QLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 115 ~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
.|+.|+..+++..+..||..|||+|..|
T Consensus 229 pLh~A~~~g~~~~v~~Ll~~gad~~~~d 256 (301)
T 2b0o_E 229 ALHYAALYNQPDCLKLLLKGRALVGTVN 256 (301)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCCSCCC
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCcC
Confidence 5677777777777777777777777654
No 85
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=58.92 E-value=9.5 Score=27.69 Aligned_cols=29 Identities=24% Similarity=0.068 Sum_probs=26.2
Q ss_pred HHHHHhhhcCCHHHHHHHHH---cCCCCCCcC
Q psy13622 114 QQLHSSVRTSNLDTSLRLLS---QGADPNYFY 142 (143)
Q Consensus 114 ~~l~~av~~~~~~~~~~ll~---~Ga~~n~~~ 142 (143)
..|+.|+..+++..+..|+. .|+|+|..|
T Consensus 138 tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d 169 (256)
T 2etb_A 138 LPLSLAACTKQWDVVTYLLENPHQPASLEATD 169 (256)
T ss_dssp SHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCC
T ss_pred CHHHHHHHcCCHHHHHHHHhccccCCCcCccC
Confidence 36899999999999999999 999999876
No 86
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=58.61 E-value=9.3 Score=26.47 Aligned_cols=28 Identities=29% Similarity=0.326 Sum_probs=22.1
Q ss_pred HHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 115 QLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 115 ~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
.|+.|+..+++..+..|+..|+++|..|
T Consensus 71 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~ 98 (192)
T 2rfm_A 71 ALIWAVKNNRLGIAEKLLSKGSNVNTKD 98 (192)
T ss_dssp HHHHHHHTTCHHHHHHHHHHTCCTTCCC
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCCCCCC
Confidence 5778888888888888888888887665
No 87
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=58.46 E-value=9 Score=28.18 Aligned_cols=28 Identities=29% Similarity=0.329 Sum_probs=18.2
Q ss_pred HHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 115 QLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 115 ~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
.|+.|+..++...+..|+..|+|+|..|
T Consensus 169 ~Lh~A~~~~~~~~v~~Ll~~gad~~~~d 196 (261)
T 2xai_A 169 PLHAVARTASEELACLLMDFGADTQAKN 196 (261)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCTTCCC
T ss_pred hHHHHHHcCCHHHHHHHHHcCCCCCCcC
Confidence 4666666666666666666677766554
No 88
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=58.06 E-value=9.3 Score=27.89 Aligned_cols=28 Identities=29% Similarity=0.444 Sum_probs=20.5
Q ss_pred HHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 115 QLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 115 ~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
.|+.|+..++...+..|+..|+|+|..|
T Consensus 160 ~L~~A~~~~~~~~v~~Ll~~ga~~~~~~ 187 (253)
T 1yyh_A 160 ALHWAAAVNNVDAAVVLLKNGANKDMQN 187 (253)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCTTCCC
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCcC
Confidence 5677777777777777777777777654
No 89
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=57.98 E-value=10 Score=26.66 Aligned_cols=28 Identities=29% Similarity=0.444 Sum_probs=21.2
Q ss_pred HHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 115 QLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 115 ~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
.|+.|+..++...+..|+..|+|+|..|
T Consensus 128 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~ 155 (223)
T 2f8y_A 128 ALHWAAAVNNVDAAVVLLKNGANKDMQN 155 (223)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCcC
Confidence 5777777888877777777888877654
No 90
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=57.90 E-value=10 Score=26.91 Aligned_cols=28 Identities=29% Similarity=0.303 Sum_probs=19.9
Q ss_pred HHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 115 QLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 115 ~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
.|+.|+..++...+..|+..|+|+|..|
T Consensus 153 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~ 180 (241)
T 1k1a_A 153 PLIHAVENNSLSMVQLLLQHGANVNAQM 180 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCBC
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCcC
Confidence 5667777777777777777777777654
No 91
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=57.48 E-value=9.2 Score=26.93 Aligned_cols=29 Identities=28% Similarity=0.227 Sum_probs=25.4
Q ss_pred HHHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 114 QQLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 114 ~~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
..|+.|+..++...+..|+..|+|+|..|
T Consensus 179 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~ 207 (240)
T 3eu9_A 179 TALHWAVLAGNTTVISLLLEAGANVDAQN 207 (240)
T ss_dssp CHHHHHHHHTCHHHHHHHHHHTCCTTCBC
T ss_pred cHHHHHHHcCCHHHHHHHHHcCCCCCCcC
Confidence 36889999999999999999999998765
No 92
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=57.17 E-value=10 Score=28.44 Aligned_cols=28 Identities=25% Similarity=0.232 Sum_probs=23.7
Q ss_pred HHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 115 QLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 115 ~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
.|+.|+..++...+..|+..|+|+|..|
T Consensus 250 ~L~~A~~~g~~~~v~~Ll~~ga~~n~~d 277 (351)
T 3utm_A 250 PLHVAAERAHNDVMEVLHKHGAKMNALD 277 (351)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCCCCcC
Confidence 6788888999888888888899988765
No 93
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=57.17 E-value=9.1 Score=31.54 Aligned_cols=28 Identities=21% Similarity=0.026 Sum_probs=20.6
Q ss_pred HHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 115 QLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 115 ~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
.|+.|+..|+...+..||..|||+|..|
T Consensus 210 pLh~A~~~g~~~~v~~Ll~~ga~~~~~d 237 (497)
T 3lvq_E 210 ALHYAALYNQPDCLKLLLKGRALVGTVN 237 (497)
T ss_dssp HHHHHTTTTCHHHHHHHHHTCCCCSCCC
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCcC
Confidence 5777777777777777777777777655
No 94
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=57.13 E-value=9.8 Score=27.98 Aligned_cols=28 Identities=29% Similarity=0.279 Sum_probs=23.4
Q ss_pred HHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 115 QLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 115 ~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
.|+.|+..++...+..|+..|+++|..|
T Consensus 39 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~ 66 (261)
T 2xai_A 39 PLHEACLGGHLSCVKILLKHGAQVNGVT 66 (261)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCTTCCC
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCCCCCC
Confidence 5788888888888888888898888765
No 95
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=57.02 E-value=10 Score=26.74 Aligned_cols=28 Identities=18% Similarity=0.254 Sum_probs=16.6
Q ss_pred HHHHhhhcCCHHHHHHHH-HcCCCCCCcC
Q psy13622 115 QLHSSVRTSNLDTSLRLL-SQGADPNYFY 142 (143)
Q Consensus 115 ~l~~av~~~~~~~~~~ll-~~Ga~~n~~~ 142 (143)
.|+.|+..++...+..|+ ..|+|+|..|
T Consensus 177 ~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~ 205 (228)
T 2dzn_A 177 PLFHALAEGHGDAAVLLVEKYGAEYDLVD 205 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHCCCSCCBC
T ss_pred HHHHHHHcCCHHHHHHHHHhcCCCCCccC
Confidence 455666666666665565 5566666544
No 96
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=56.82 E-value=10 Score=28.39 Aligned_cols=28 Identities=25% Similarity=0.210 Sum_probs=22.5
Q ss_pred HHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 115 QLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 115 ~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
.|+.|+..+++..+..|+..|+|+|..|
T Consensus 61 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~ 88 (351)
T 3utm_A 61 PLHLAAGYNRVRIVQLLLQHGADVHAKD 88 (351)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCccC
Confidence 5788888888888888888888887665
No 97
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=56.41 E-value=11 Score=27.32 Aligned_cols=29 Identities=17% Similarity=-0.031 Sum_probs=26.1
Q ss_pred HHHHHhhhcCCHHHHHHHHH---cCCCCCCcC
Q psy13622 114 QQLHSSVRTSNLDTSLRLLS---QGADPNYFY 142 (143)
Q Consensus 114 ~~l~~av~~~~~~~~~~ll~---~Ga~~n~~~ 142 (143)
..|+.|+..+++..+..|+. .|+|+|..|
T Consensus 142 tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d 173 (260)
T 3jxi_A 142 LPLSLAACTNQPHIVHYLTENGHKQADLRRQD 173 (260)
T ss_dssp SHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCC
T ss_pred CHHHHHHHcCCHHHHHHHHhccccCCCCcccC
Confidence 36899999999999999999 899999876
No 98
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=55.58 E-value=11 Score=26.64 Aligned_cols=28 Identities=21% Similarity=0.110 Sum_probs=20.2
Q ss_pred HHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 115 QLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 115 ~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
.|+.|+..+++..+..|+..|+++|..|
T Consensus 43 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~ 70 (231)
T 3aji_A 43 ALHWACSAGHTEIVEFLLQLGVPVNDKD 70 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCSCCCC
T ss_pred HHHHHHHcCcHHHHHHHHHhCCCCCCcC
Confidence 5677777777777777777777777654
No 99
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=55.50 E-value=10 Score=30.44 Aligned_cols=29 Identities=24% Similarity=0.171 Sum_probs=26.0
Q ss_pred HHHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 114 QQLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 114 ~~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
..|+.|+..+++..+-.||..|+|+|..|
T Consensus 237 TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d 265 (368)
T 3jue_A 237 TPLIQATAANSLLACEFLLQNGANVNQAD 265 (368)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred CHHHHHHHCCCHHHHHHHHHcCCCCCCCC
Confidence 47899999999999999999999999876
No 100
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=55.36 E-value=10 Score=27.10 Aligned_cols=29 Identities=31% Similarity=0.163 Sum_probs=25.9
Q ss_pred HHHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 114 QQLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 114 ~~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
..|+.|+..+++..+..|+..|+++|..+
T Consensus 119 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~ 147 (236)
T 1ikn_D 119 TCLHLASIHGYLGIVELLVSLGADVNAQE 147 (236)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHTCCTTCCC
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Confidence 36899999999999999999999999765
No 101
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=55.09 E-value=8 Score=29.79 Aligned_cols=28 Identities=25% Similarity=0.307 Sum_probs=20.9
Q ss_pred HHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 115 QLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 115 ~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
.|+.|+..+++..+..||..|+|+|..|
T Consensus 214 ~L~~A~~~g~~~~v~~Ll~~gad~~~~d 241 (364)
T 3ljn_A 214 HLHWAILINWEDVAMRFVEMGIDVNMED 241 (364)
T ss_dssp TTHHHHTTTCHHHHHHHHTTTCCTTCCC
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCCC
Confidence 5677777777777777777788877655
No 102
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=55.06 E-value=11 Score=26.86 Aligned_cols=28 Identities=25% Similarity=0.328 Sum_probs=14.9
Q ss_pred HHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 115 QLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 115 ~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
.|+.|++.++...+..|+..|+|+|..|
T Consensus 180 ~L~~A~~~~~~~~v~~Ll~~gad~~~~d 207 (237)
T 3b7b_A 180 PLHIAARENRYDCVVLFLSRDSDVTLKN 207 (237)
T ss_dssp HHHHHHHTTCHHHHHHHHTTTCCTTCCC
T ss_pred HHHHHHHhCCHhHHHHHHHcCCCCCccC
Confidence 3455555555555555555555555443
No 103
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=54.91 E-value=12 Score=26.25 Aligned_cols=28 Identities=25% Similarity=0.200 Sum_probs=23.7
Q ss_pred HHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 115 QLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 115 ~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
.|+.|+..++...+..|+..|+++|..|
T Consensus 110 ~L~~A~~~~~~~~~~~Ll~~g~~~~~~~ 137 (228)
T 2dzn_A 110 CLHLAVGKKWFEVSQFLIENGASVRIKD 137 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCSCCCC
T ss_pred HHHHHHHcCCHhHHHHHHHcCCCccccC
Confidence 5788888999988888888899988765
No 104
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=54.74 E-value=12 Score=27.46 Aligned_cols=29 Identities=28% Similarity=0.075 Sum_probs=26.2
Q ss_pred HHHHHhhhcCCHHHHHHHHH---cCCCCCCcC
Q psy13622 114 QQLHSSVRTSNLDTSLRLLS---QGADPNYFY 142 (143)
Q Consensus 114 ~~l~~av~~~~~~~~~~ll~---~Ga~~n~~~ 142 (143)
..|+.|+..+++..+..||. .|+|+|..|
T Consensus 150 tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d 181 (273)
T 2pnn_A 150 LPLSLAACTNQLAIVKFLLQNSWQPADISARD 181 (273)
T ss_dssp SHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCC
T ss_pred CHHHHHHHcCCHHHHHHHHhcccCCCCceeeC
Confidence 36899999999999999999 999999876
No 105
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=54.38 E-value=13 Score=26.38 Aligned_cols=29 Identities=28% Similarity=0.290 Sum_probs=25.9
Q ss_pred HHHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 114 QQLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 114 ~~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
..|+.|+..++...+..|+..|+++|..+
T Consensus 77 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~ 105 (232)
T 2rfa_A 77 TALHIAVINQNVNLVRALLARGASVSARA 105 (232)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred CHHHHHHHcCCHHHHHHHHhCCCCCCccc
Confidence 37899999999999999999999999764
No 106
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=54.19 E-value=9 Score=28.75 Aligned_cols=28 Identities=21% Similarity=0.188 Sum_probs=22.2
Q ss_pred HHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 115 QLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 115 ~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
.|+.|+..|++..+..|+..|+++|..|
T Consensus 62 ~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~ 89 (285)
T 3d9h_A 62 PMHEAAIHGHQLSLRNLISQGWAVNIIT 89 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCSCEEC
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCCCCcC
Confidence 5788888888888888888888887654
No 107
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=53.59 E-value=5.4 Score=26.25 Aligned_cols=27 Identities=22% Similarity=0.286 Sum_probs=23.4
Q ss_pred HHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 115 QLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 115 ~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
.|+.|+. ++...+..|+..|+++|..|
T Consensus 48 ~L~~A~~-~~~~~v~~Ll~~g~~~~~~~ 74 (136)
T 1d9s_A 48 PIQVMMM-GSAQVAELLLLHGAEPNCAD 74 (136)
T ss_dssp TTTTSTT-SCHHHHHHHHHHTCCSSCCB
T ss_pred HHHHHHc-CCHHHHHHHHHCCCCCCCcC
Confidence 4778888 99999999999999999865
No 108
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=53.40 E-value=9 Score=28.84 Aligned_cols=29 Identities=24% Similarity=0.241 Sum_probs=25.9
Q ss_pred HHHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 114 QQLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 114 ~~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
..|+.|+..+++..+..|+..|+|+|..|
T Consensus 64 t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d 92 (285)
T 3kea_A 64 FPLHQAATLEDTKIVKILLFSGLDDSQFD 92 (285)
T ss_dssp CHHHHHTTSSSCHHHHHHHHTTCCTTCCC
T ss_pred CHHHHHHHcCCHHHHHHHHHCCCCCCCcC
Confidence 47899999999999999999999999765
No 109
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=52.90 E-value=9.2 Score=22.11 Aligned_cols=31 Identities=29% Similarity=0.617 Sum_probs=25.6
Q ss_pred CCCCC-CCCeeecccceeeccchhhhhhcCCC
Q psy13622 2 SSRAA-DPKWGILNKGVLVCDACCSIHRSLGR 32 (143)
Q Consensus 2 DCga~-~P~was~n~gvfiC~~CsgiHR~lg~ 32 (143)
+|++. -|.|=.-.-|..+|..|.-.++..|.
T Consensus 9 ~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~~ 40 (46)
T 1gnf_A 9 NCGATATPLWRRDRTGHYLCNACGLYHKMNGQ 40 (46)
T ss_dssp TTCCCCCSSCBCCTTCCCBCSHHHHHHHHTCS
T ss_pred CcCCCCCCcCccCCCCCccchHHHHHHHHcCC
Confidence 68866 47899988999999999988877664
No 110
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=52.86 E-value=14 Score=26.69 Aligned_cols=28 Identities=39% Similarity=0.438 Sum_probs=21.0
Q ss_pred HHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 115 QLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 115 ~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
.|+.|+..+++..+..|+..|+++|..|
T Consensus 42 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~ 69 (285)
T 1wdy_A 42 PLHNAVQMSREDIVELLLRHGADPVLRK 69 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCcccC
Confidence 5777777888777777777788777654
No 111
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=52.27 E-value=14 Score=27.74 Aligned_cols=28 Identities=32% Similarity=0.368 Sum_probs=16.9
Q ss_pred HHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 115 QLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 115 ~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
.|+.|+..++...+..|+..|+|+|..|
T Consensus 225 ~L~~A~~~~~~~~v~~Ll~~gad~~~~d 252 (285)
T 3d9h_A 225 PLHAVVRTASEELACLLMDFGADTQAKN 252 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCCCCcC
Confidence 4555666666666666666666666544
No 112
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=51.35 E-value=13 Score=26.41 Aligned_cols=28 Identities=18% Similarity=0.269 Sum_probs=18.8
Q ss_pred HHHHhhhcCC------HHHHHHHHHcCCCCCCcC
Q psy13622 115 QLHSSVRTSN------LDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 115 ~l~~av~~~~------~~~~~~ll~~Ga~~n~~~ 142 (143)
.|+.|+..+. +..+-.||..|||+|..|
T Consensus 78 pLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d 111 (186)
T 3t8k_A 78 LFFPLFQGGGNDITGTTELCKIFLEKGADITALY 111 (186)
T ss_dssp THHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCB
T ss_pred HHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccC
Confidence 4555665553 345566778899999876
No 113
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=50.63 E-value=13 Score=26.36 Aligned_cols=28 Identities=21% Similarity=0.152 Sum_probs=19.3
Q ss_pred HHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 115 QLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 115 ~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
.|+.|+..++...+..|+..|+|+|..|
T Consensus 147 ~L~~A~~~~~~~~~~~Ll~~g~~~~~~~ 174 (237)
T 3b7b_A 147 CLHWAAFSGCVDIAEILLAAKCDLHAVN 174 (237)
T ss_dssp HHHHHHHHCCHHHHHHHHTTTCCTTCCC
T ss_pred HHHHHHHCCCHHHHHHHHHcCCCCCCcC
Confidence 4666777777777777777777777654
No 114
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=50.42 E-value=16 Score=25.09 Aligned_cols=28 Identities=25% Similarity=0.207 Sum_probs=19.3
Q ss_pred HHHHhhhcCC-----HHHHHHHHHcCCCCCCcC
Q psy13622 115 QLHSSVRTSN-----LDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 115 ~l~~av~~~~-----~~~~~~ll~~Ga~~n~~~ 142 (143)
.|+.|+..++ ...+..|+..|+|+|..|
T Consensus 143 ~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~ 175 (201)
T 3hra_A 143 ALIEAVGLREGNQLYQDIVKLLMENGADQSIKD 175 (201)
T ss_dssp HHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCC
T ss_pred HHHHHHHhccchhhHHHHHHHHHHCCCCCCccC
Confidence 5667777776 666666777788877655
No 115
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=50.39 E-value=6.3 Score=26.57 Aligned_cols=29 Identities=7% Similarity=-0.068 Sum_probs=19.7
Q ss_pred HHHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 114 QQLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 114 ~~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
..|+.|+..++...+..|+..|+|+|..+
T Consensus 113 tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~ 141 (156)
T 1bi7_B 113 LPVDLAEELGHRDVARYLRAAAGGTRGSN 141 (156)
T ss_dssp CHHHHHHHHTCHHHHHHHSSCC-------
T ss_pred CHHHHHHHhCHHHHHHHHHHcCCCCCccC
Confidence 36889999999999999999999998765
No 116
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=50.28 E-value=14 Score=29.09 Aligned_cols=26 Identities=35% Similarity=0.512 Sum_probs=13.0
Q ss_pred HHHhhhcCCHHHHHHHHHcCCCCCCc
Q psy13622 116 LHSSVRTSNLDTSLRLLSQGADPNYF 141 (143)
Q Consensus 116 l~~av~~~~~~~~~~ll~~Ga~~n~~ 141 (143)
|+.|+..++...+..|+..|+|+|..
T Consensus 348 L~~A~~~g~~~iv~~Ll~~ga~~~~~ 373 (437)
T 1n11_A 348 LHQAAQQGHTDIVTLLLKNGASPNEV 373 (437)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCSCCC
T ss_pred HHHHHHCChHHHHHHHHHCcCCCCCC
Confidence 44445555555554555555555543
No 117
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=50.13 E-value=11 Score=21.46 Aligned_cols=31 Identities=23% Similarity=0.471 Sum_probs=25.1
Q ss_pred CCCCCC-CCCeeecccceeeccchhhhhhcCC
Q psy13622 1 MSSRAA-DPKWGILNKGVLVCDACCSIHRSLG 31 (143)
Q Consensus 1 ~DCga~-~P~was~n~gvfiC~~CsgiHR~lg 31 (143)
.+|+.. -|.|=.-..|-.+|..|.-..+.-|
T Consensus 5 ~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~ 36 (43)
T 2vut_I 5 TNCFTQTTPLWRRNPEGQPLCNACGLFLKLHG 36 (43)
T ss_dssp SSSCCCCCSCCEECTTSCEECHHHHHHHHHHS
T ss_pred CccCCCCCCccccCCCCCcccHHHHHHHHHhC
Confidence 368866 4799999999999999998777655
No 118
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=49.40 E-value=14 Score=28.92 Aligned_cols=28 Identities=14% Similarity=0.256 Sum_probs=19.1
Q ss_pred HHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 115 QLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 115 ~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
.|+.|+..+++..+..|+..|+|+|..|
T Consensus 316 pL~~A~~~g~~~iv~~Ll~~gad~~~~d 343 (373)
T 2fo1_E 316 PIMLAAQEGRIEVVMYLIQQGASVEAVD 343 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCSSCCC
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCccCCC
Confidence 4666677777777777777777776654
No 119
>4glq_A Methyl-accepting chemotaxis protein; chromophore, phytochrome, cyanobacteriochrome, phycoviolobil bilin, BILI-protein; HET: PVN; 1.77A {Thermosynechococcus elongatus} PDB: 4fof_A*
Probab=48.78 E-value=5.6 Score=28.28 Aligned_cols=28 Identities=14% Similarity=0.226 Sum_probs=23.4
Q ss_pred CCCChHHHHHHHhhccCchhHHhccccc
Q psy13622 43 STWPPSLLSMLMTLTNGGAPSLWEHSLC 70 (143)
Q Consensus 43 d~w~~~~v~~~~~~GN~~~n~~~ea~~~ 70 (143)
-.|+++|+++++.+++..+-.+-.+++.
T Consensus 131 r~w~~~ei~ll~~lA~ql~iAi~qa~l~ 158 (171)
T 4glq_A 131 RQWQEIEIDQFSELASTGSLVLERLHFL 158 (171)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999988888888875
No 120
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=48.71 E-value=11 Score=28.43 Aligned_cols=28 Identities=21% Similarity=0.188 Sum_probs=25.5
Q ss_pred HHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 115 QLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 115 ~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
.|+.|+..|++..+..|+..|+++|..|
T Consensus 34 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~ 61 (285)
T 3kea_A 34 ASYYAIADNNVRLVCTLLNAGALKNLLE 61 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTGGGSCCT
T ss_pred HHHHHHHcCCHHHHHHHHhCCCCCCCCC
Confidence 6899999999999999999999998764
No 121
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=48.13 E-value=15 Score=28.65 Aligned_cols=29 Identities=24% Similarity=0.313 Sum_probs=26.0
Q ss_pred HHHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 114 QQLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 114 ~~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
..|+.|+..+++..+..|+..|+|+|..|
T Consensus 168 TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~ 196 (373)
T 2fo1_E 168 TPLMLAVLARRRRLVAYLMKAGADPTIYN 196 (373)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCSCCCC
T ss_pred CHHHHHHHcChHHHHHHHHHCCCCCcccC
Confidence 46889999999999999999999999765
No 122
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=47.90 E-value=15 Score=24.34 Aligned_cols=27 Identities=30% Similarity=0.354 Sum_probs=23.2
Q ss_pred HHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 115 QLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 115 ~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
.|+.|+. ++...+..|+..|+++|..|
T Consensus 41 ~L~~A~~-~~~~~v~~Ll~~g~~~~~~~ 67 (162)
T 1ihb_A 41 ALQVMKL-GNPEIARRLLLRGANPDLKD 67 (162)
T ss_dssp HHHHCCS-SCHHHHHHHHHTTCCTTCCC
T ss_pred HHHHHHc-CcHHHHHHHHHcCCCCCCCC
Confidence 4677888 99999999999999999765
No 123
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=46.36 E-value=19 Score=25.17 Aligned_cols=29 Identities=31% Similarity=0.526 Sum_probs=23.9
Q ss_pred HHHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 114 QQLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 114 ~~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
..|+.|+..+++..+..|+..|+++|..|
T Consensus 78 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~ 106 (240)
T 3eu9_A 78 TPLHWATRQGHLSMVVQLMKYGADPSLID 106 (240)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCTTCCC
T ss_pred ChhHHHHHcCCHHHHHHHHHcCCCCcccC
Confidence 36788888999888888888899988754
No 124
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=43.99 E-value=22 Score=23.42 Aligned_cols=27 Identities=33% Similarity=0.390 Sum_probs=23.0
Q ss_pred HHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 115 QLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 115 ~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
.|+. +..++...+..|+..|+++|..|
T Consensus 39 ~L~~-~~~~~~~~v~~Ll~~g~~~~~~~ 65 (156)
T 1bd8_A 39 ALQV-MMFGSTAIALELLKQGASPNVQD 65 (156)
T ss_dssp HHHH-SCTTCHHHHHHHHHTTCCTTCCC
T ss_pred HHHH-HHcCCHHHHHHHHHCCCCCCCcC
Confidence 4566 78899999999999999999875
No 125
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=43.64 E-value=22 Score=26.50 Aligned_cols=29 Identities=28% Similarity=0.327 Sum_probs=25.6
Q ss_pred HHHHHhhhcCCHHHHHHHHHcCC-CCCCcC
Q psy13622 114 QQLHSSVRTSNLDTSLRLLSQGA-DPNYFY 142 (143)
Q Consensus 114 ~~l~~av~~~~~~~~~~ll~~Ga-~~n~~~ 142 (143)
..|+.|+..+++..+..|+..|+ ++|..|
T Consensus 113 T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~ 142 (276)
T 4hbd_A 113 TALHYSVSHANFPVVQQLLDSGVCKVDKQN 142 (276)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTSCCCTTCCC
T ss_pred CHHHHHHHCCCHHHHHHHHHCCCCcCCCCC
Confidence 46889999999999999999998 888765
No 126
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=42.34 E-value=17 Score=28.60 Aligned_cols=28 Identities=29% Similarity=0.211 Sum_probs=19.1
Q ss_pred HHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622 115 QLHSSVRTSNLDTSLRLLSQGADPNYFY 142 (143)
Q Consensus 115 ~l~~av~~~~~~~~~~ll~~Ga~~n~~~ 142 (143)
.|+.|+..+++..+..|+..|+|+|..|
T Consensus 314 ~L~~A~~~g~~~~v~~Ll~~gad~n~~~ 341 (437)
T 1n11_A 314 PLHVASHYGNIKLVKFLLQHQADVNAKT 341 (437)
T ss_dssp HHHHHHHSSCSHHHHHHHHTTCCTTCCC
T ss_pred HHHHHHHcCcHHHHHHHHhcCCCCCCCC
Confidence 4666777777777767777777777654
No 127
>1dsz_A RAR-alpha, retinoic acid receptor alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hra_A
Probab=40.68 E-value=12 Score=24.23 Aligned_cols=24 Identities=21% Similarity=0.468 Sum_probs=18.6
Q ss_pred CCCCCCCeeecccceeeccchhhhhhc
Q psy13622 3 SRAADPKWGILNKGVLVCDACCSIHRS 29 (143)
Q Consensus 3 Cga~~P~was~n~gvfiC~~CsgiHR~ 29 (143)
||.+.- ...||++.|..|+++.|-
T Consensus 10 Cg~~a~---g~hyGv~sC~aCk~FFRR 33 (86)
T 1dsz_A 10 CQDKSS---GYHYGVSACEGCKGFFRR 33 (86)
T ss_dssp TCSCCC---SEETTEECCHHHHHHHHH
T ss_pred ECCCcc---ceeeCchhHHHHHHHHHH
Confidence 564432 568999999999998873
No 128
>1cit_A NGFI-B, protein (orphan nuclear receptor NGFI-B); early immediate response gene product, transcription factor, monomeric protein-DNA complex; HET: DNA; 2.70A {Rattus norvegicus} SCOP: g.39.1.2
Probab=39.69 E-value=15 Score=24.00 Aligned_cols=18 Identities=22% Similarity=0.582 Sum_probs=15.9
Q ss_pred ecccceeeccchhhhhhc
Q psy13622 12 ILNKGVLVCDACCSIHRS 29 (143)
Q Consensus 12 s~n~gvfiC~~CsgiHR~ 29 (143)
...||++.|..|+++.|-
T Consensus 12 g~hyGv~sC~aCk~FFRR 29 (89)
T 1cit_A 12 CQHYGVRTCEGCKGFFKR 29 (89)
T ss_dssp EEETTEEECHHHHHHHHH
T ss_pred ceEeCccchhhhhhhcee
Confidence 579999999999998873
No 129
>1a6y_A Orphan nuclear receptor NR1D1; orphan receptor, DNA-binding, reverb, REV- ERB, transcription regulation, transcription/DNA complex; HET: DNA 5IU; 2.30A {Homo sapiens} SCOP: g.39.1.2 PDB: 1ga5_A* 1hlz_A
Probab=39.56 E-value=12 Score=24.80 Aligned_cols=18 Identities=33% Similarity=0.739 Sum_probs=16.0
Q ss_pred ecccceeeccchhhhhhc
Q psy13622 12 ILNKGVLVCDACCSIHRS 29 (143)
Q Consensus 12 s~n~gvfiC~~CsgiHR~ 29 (143)
...||++.|..|+++.|-
T Consensus 19 g~hyGv~sC~aCk~FFRR 36 (94)
T 1a6y_A 19 GFHYGVLACEGCKGFFRR 36 (94)
T ss_dssp EEETTEEECHHHHHHHHH
T ss_pred ceEeCccchhhhhhehhe
Confidence 679999999999998873
No 130
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=38.97 E-value=20 Score=22.23 Aligned_cols=32 Identities=22% Similarity=0.435 Sum_probs=25.7
Q ss_pred CCCCCC-CCCeeecccceeeccchhhhhhcCCC
Q psy13622 1 MSSRAA-DPKWGILNKGVLVCDACCSIHRSLGR 32 (143)
Q Consensus 1 ~DCga~-~P~was~n~gvfiC~~CsgiHR~lg~ 32 (143)
..||.. -|.|-.-.-|-.||..|.-..+..|.
T Consensus 13 ~~C~t~~Tp~WR~gp~G~~LCNaCGl~~~~~~~ 45 (66)
T 4gat_A 13 TNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGV 45 (66)
T ss_dssp TTTCCCCCSSCEEETTTEEECHHHHHHHHHHCS
T ss_pred CCCCCCCCCcCCcCCCCCCccHHHHHHHHHcCC
Confidence 368866 58999999999999999887776553
No 131
>2han_B Ecdysone receptor; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2 PDB: 1r0o_B 1r0n_B
Probab=37.52 E-value=13 Score=25.62 Aligned_cols=18 Identities=22% Similarity=0.525 Sum_probs=16.1
Q ss_pred ecccceeeccchhhhhhc
Q psy13622 12 ILNKGVLVCDACCSIHRS 29 (143)
Q Consensus 12 s~n~gvfiC~~CsgiHR~ 29 (143)
...|||+.|..|+++.|-
T Consensus 20 g~hyGv~sC~aCk~FFRR 37 (119)
T 2han_B 20 GYHYNALTCEGCKGFFRR 37 (119)
T ss_dssp EEETTEEECHHHHHHHHH
T ss_pred cceECchhHHhhHHhhhh
Confidence 679999999999998873
No 132
>2han_A Protein ultraspiracle; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2
Probab=36.42 E-value=16 Score=24.09 Aligned_cols=18 Identities=22% Similarity=0.532 Sum_probs=15.9
Q ss_pred ecccceeeccchhhhhhc
Q psy13622 12 ILNKGVLVCDACCSIHRS 29 (143)
Q Consensus 12 s~n~gvfiC~~CsgiHR~ 29 (143)
...||++.|..|+++.|-
T Consensus 22 g~hyGv~sC~aCk~FFRR 39 (93)
T 2han_A 22 GKHYGVYSCEGCKGFFKR 39 (93)
T ss_dssp EEETTEEECHHHHHHHHH
T ss_pred CeecCcchhHHHHHHHHh
Confidence 579999999999998873
No 133
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=36.27 E-value=20 Score=24.54 Aligned_cols=32 Identities=28% Similarity=0.615 Sum_probs=25.7
Q ss_pred CCCCCC-CCCeeecccceeeccchhhhhhcCCC
Q psy13622 1 MSSRAA-DPKWGILNKGVLVCDACCSIHRSLGR 32 (143)
Q Consensus 1 ~DCga~-~P~was~n~gvfiC~~CsgiHR~lg~ 32 (143)
.+||+. -|.|=.-.-|-++|..|.-.++..|.
T Consensus 9 ~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~Kl~G~ 41 (115)
T 4hc9_A 9 VNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQ 41 (115)
T ss_dssp TTTCCSCCSSCEECTTSCEECHHHHHHHHHHSS
T ss_pred CCCCCccCCcceECCCCCCcCcchhhhhhhccc
Confidence 368876 58999989999999999887765544
No 134
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=36.16 E-value=14 Score=22.78 Aligned_cols=32 Identities=19% Similarity=0.328 Sum_probs=25.7
Q ss_pred CCCCCCC-CCeeecccceeeccchhhhhhcCCC
Q psy13622 1 MSSRAAD-PKWGILNKGVLVCDACCSIHRSLGR 32 (143)
Q Consensus 1 ~DCga~~-P~was~n~gvfiC~~CsgiHR~lg~ 32 (143)
.+|+... |.|=.-..|-.||..|.-..+..|.
T Consensus 11 ~~C~tt~Tp~WR~gp~G~~LCNACGl~~~~~~~ 43 (63)
T 3dfx_A 11 ANCQTTTTTLWRRNANGDPVCNACGLYYKLHNI 43 (63)
T ss_dssp TTTCCSCCSSCCCCTTSCCCCHHHHHHHHHHSS
T ss_pred CCcCCCCCCccCCCCCCCchhhHHHHHHHHcCC
Confidence 3688664 7999999999999999887776653
No 135
>1hcq_A Protein (estrogen receptor); protein-DNA complex, complexed with drug, transcription/DNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hcp_A 4aa6_A
Probab=35.94 E-value=15 Score=23.75 Aligned_cols=18 Identities=22% Similarity=0.571 Sum_probs=16.1
Q ss_pred ecccceeeccchhhhhhc
Q psy13622 12 ILNKGVLVCDACCSIHRS 29 (143)
Q Consensus 12 s~n~gvfiC~~CsgiHR~ 29 (143)
...||++.|..|+++.|-
T Consensus 16 g~hyGv~sC~aCk~FFRR 33 (84)
T 1hcq_A 16 GYHYGVWSCEGCKAFFKR 33 (84)
T ss_dssp EEETTEEECHHHHHHHHH
T ss_pred CeeeCccchHHhhhhhhh
Confidence 679999999999998873
No 136
>3cbb_A HNF-4-alpha, hepatocyte nuclear factor 4-alpha, DNA binding domain, nuclear; zinc finger; 2.00A {Homo sapiens}
Probab=35.58 E-value=12 Score=23.86 Aligned_cols=18 Identities=28% Similarity=0.506 Sum_probs=15.8
Q ss_pred ecccceeeccchhhhhhc
Q psy13622 12 ILNKGVLVCDACCSIHRS 29 (143)
Q Consensus 12 s~n~gvfiC~~CsgiHR~ 29 (143)
...||++.|..|+++.|-
T Consensus 12 g~hyGv~sC~aCk~FFRR 29 (78)
T 3cbb_A 12 GKHYGASSCDGCKGFFRR 29 (78)
T ss_dssp SEETTEECCHHHHHHHHH
T ss_pred ceEeCCcchhhhceeeeE
Confidence 468999999999998873
No 137
>2nll_B Protein (thyroid hormone receptor); complex (transcription regulation/DNA), DNA-binding, nuclear protein, zinc- finger, multigene family; HET: DNA 5IU; 1.90A {Homo sapiens} SCOP: g.39.1.2 PDB: 3m9e_A*
Probab=35.35 E-value=15 Score=24.71 Aligned_cols=24 Identities=13% Similarity=0.315 Sum_probs=18.6
Q ss_pred CCCCCCCeeecccceeeccchhhhhhc
Q psy13622 3 SRAADPKWGILNKGVLVCDACCSIHRS 29 (143)
Q Consensus 3 Cga~~P~was~n~gvfiC~~CsgiHR~ 29 (143)
||.+. ....|||+.|..|+++.|-
T Consensus 7 Cgd~a---~g~hyGv~sC~aCk~FFRR 30 (103)
T 2nll_B 7 CGDKA---TGYHYRCITCEGCKGFFRR 30 (103)
T ss_dssp TCSBC---CSEETTEECCHHHHHHHHH
T ss_pred eCCcC---cCeecCcccHHHhhhhhee
Confidence 66433 2568999999999998873
No 138
>1ynw_B Retinoic acid receptor RXR-alpha, retinoid X receptor; VDR, nuclear receptor, protein-DNA complex, transcripti complex; 3.00A {Homo sapiens} SCOP: g.39.1.2
Probab=34.03 E-value=13 Score=24.75 Aligned_cols=18 Identities=22% Similarity=0.532 Sum_probs=15.9
Q ss_pred ecccceeeccchhhhhhc
Q psy13622 12 ILNKGVLVCDACCSIHRS 29 (143)
Q Consensus 12 s~n~gvfiC~~CsgiHR~ 29 (143)
...||++.|..|+++.|-
T Consensus 15 g~hyGv~sC~aCk~FFRR 32 (99)
T 1ynw_B 15 GKHYGVYSCEGCKGFFKR 32 (99)
T ss_dssp BCCTTSCBCSHHHHHHHH
T ss_pred ceeeCccchHHHHHHHHh
Confidence 568999999999998873
No 139
>2ebl_A COUP transcription factor 1; DNA-binding, metal-binding, nuclear protein, receptor, transcription regulation, zinc, EAR3, erbal3 tfcoup1; NMR {Homo sapiens}
Probab=33.33 E-value=14 Score=24.20 Aligned_cols=18 Identities=22% Similarity=0.530 Sum_probs=15.8
Q ss_pred ecccceeeccchhhhhhc
Q psy13622 12 ILNKGVLVCDACCSIHRS 29 (143)
Q Consensus 12 s~n~gvfiC~~CsgiHR~ 29 (143)
...||++.|..|+++.|-
T Consensus 19 g~hyGv~sC~aCk~FFRR 36 (89)
T 2ebl_A 19 GKHYGQFTCEGCKSFFKR 36 (89)
T ss_dssp SEETTEECCHHHHHHHHH
T ss_pred ceEeCchhhHHhhhhhhe
Confidence 568999999999998873
No 140
>1lo1_A Steroid hormone receptor ERR2; estrogen related receptor 2, DNA binding domain, HERR2, hormone nuclear receptor; NMR {Homo sapiens} SCOP: g.39.1.2
Probab=27.77 E-value=20 Score=23.84 Aligned_cols=18 Identities=28% Similarity=0.597 Sum_probs=15.9
Q ss_pred ecccceeeccchhhhhhc
Q psy13622 12 ILNKGVLVCDACCSIHRS 29 (143)
Q Consensus 12 s~n~gvfiC~~CsgiHR~ 29 (143)
...||++.|..|+++.|-
T Consensus 16 g~hyGv~sC~aCk~FFRR 33 (98)
T 1lo1_A 16 GYHYGVASCEACKAFFKR 33 (98)
T ss_dssp EESSSSEECHHHHHHHHH
T ss_pred CeeeCccchhhhhhhhee
Confidence 568999999999998873
No 141
>1r4i_A Androgen receptor; AR, steroid receptor, protein-DNA complex, transcription/DNA complex; 3.10A {Rattus norvegicus} SCOP: g.39.1.2
Probab=27.12 E-value=21 Score=24.03 Aligned_cols=18 Identities=22% Similarity=0.517 Sum_probs=16.0
Q ss_pred ecccceeeccchhhhhhc
Q psy13622 12 ILNKGVLVCDACCSIHRS 29 (143)
Q Consensus 12 s~n~gvfiC~~CsgiHR~ 29 (143)
...||++.|..|+++.|-
T Consensus 19 g~hyGv~sC~aCk~FFRR 36 (105)
T 1r4i_A 19 GAHYGALTCGSCKVFFKR 36 (105)
T ss_dssp EEETTEEEEHHHHHHHHH
T ss_pred ceEeCCcchhhhhhhhce
Confidence 578999999999998873
No 142
>1kb2_A Vitamin D3 receptor; VDR, nuclear receptor, protein-DNA complex, transcription/DNA complex; 2.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1kb4_A 1kb6_A 1ynw_A
Probab=27.08 E-value=17 Score=24.68 Aligned_cols=18 Identities=17% Similarity=0.517 Sum_probs=15.9
Q ss_pred ecccceeeccchhhhhhc
Q psy13622 12 ILNKGVLVCDACCSIHRS 29 (143)
Q Consensus 12 s~n~gvfiC~~CsgiHR~ 29 (143)
...||++.|..|+++.|-
T Consensus 18 g~hyGv~sC~aCk~FFRR 35 (110)
T 1kb2_A 18 GFHFNAMTCEGCKGFFRR 35 (110)
T ss_dssp SEETTEECCHHHHHHHHH
T ss_pred ceEeCchhHhhhhhhhee
Confidence 568999999999998873
No 143
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=26.25 E-value=18 Score=22.77 Aligned_cols=30 Identities=20% Similarity=0.592 Sum_probs=23.4
Q ss_pred CCCCC-CCCeee--cccceeeccchhhhhhcCCC
Q psy13622 2 SSRAA-DPKWGI--LNKGVLVCDACCSIHRSLGR 32 (143)
Q Consensus 2 DCga~-~P~was--~n~gvfiC~~CsgiHR~lg~ 32 (143)
.|+.. -|.|=. -.-| .||..|.-..+..|+
T Consensus 13 nC~tt~Tp~WRrg~~~~g-~LCNACGl~~~~~~~ 45 (71)
T 2kae_A 13 NCSVTETIRWRNIRSKEG-IQCNACFIYQRKYNK 45 (71)
T ss_dssp SSCCSCCSSCCCCSSSSC-CCSSHHHHHHHHHHS
T ss_pred ccCCCCCCccccCCCCCC-ccchHHHHHHHHhCC
Confidence 68866 478988 6777 899999988877654
No 144
>1dsz_B RXR-alpha, retinoic acid receptor RXR-alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1by4_A* 1rxr_A 1r0n_A 1r0o_A 2nll_A*
Probab=25.77 E-value=19 Score=23.28 Aligned_cols=18 Identities=22% Similarity=0.532 Sum_probs=15.7
Q ss_pred ecccceeeccchhhhhhc
Q psy13622 12 ILNKGVLVCDACCSIHRS 29 (143)
Q Consensus 12 s~n~gvfiC~~CsgiHR~ 29 (143)
...||++.|..|+++.|-
T Consensus 17 g~hyGv~sC~aCk~FFRR 34 (85)
T 1dsz_B 17 GKHYGVYSCEGCKGFFKR 34 (85)
T ss_dssp SEETTEECCHHHHHHHHH
T ss_pred ceeeCccchHHHHHHHHH
Confidence 468999999999998873
No 145
>2a66_A Orphan nuclear receptor NR5A2; protein-DNA complex, zinc finger, DNA- binding domain, transcription factor, FTZ-F1, C-terminal extension; 2.20A {Homo sapiens} PDB: 2ff0_A
Probab=24.36 E-value=25 Score=23.97 Aligned_cols=18 Identities=22% Similarity=0.645 Sum_probs=16.0
Q ss_pred ecccceeeccchhhhhhc
Q psy13622 12 ILNKGVLVCDACCSIHRS 29 (143)
Q Consensus 12 s~n~gvfiC~~CsgiHR~ 29 (143)
...|||+.|..|+++.|-
T Consensus 21 G~HyGv~sC~aCk~FFRR 38 (113)
T 2a66_A 21 GYHYGLLTCESCKGFFKR 38 (113)
T ss_dssp EEETTEEEEHHHHHHHHH
T ss_pred ceeeCcccHHHHHHHHhh
Confidence 679999999999998873
No 146
>3cit_A Sensor histidine kinase; MEGA: 3.30.450.40, structural genomics, sensor histidine KIN pseudomonas syringae, PSI-2; HET: MSE; 1.90A {Pseudomonas syringae PV}
Probab=22.95 E-value=44 Score=24.15 Aligned_cols=60 Identities=18% Similarity=0.123 Sum_probs=39.7
Q ss_pred CCCCCCCCeeecccceeeccchhhhh----hcCCCCcceeeeCCCCCCChHHHHHHHhhccCchh
Q psy13622 2 SSRAADPKWGILNKGVLVCDACCSIH----RSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAP 62 (143)
Q Consensus 2 DCga~~P~was~n~gvfiC~~CsgiH----R~lg~~iskVks~~ld~w~~~~v~~~~~~GN~~~n 62 (143)
|.+..+|+|.-.+-...-|+-|.-+| +.+|+ +--+.+++...|++++++.++.+..-.+-
T Consensus 80 ~~~~~gpr~~~~tg~~t~svl~vPL~~~~g~~~Gv-lql~N~~~~~~f~~eD~e~l~lLA~~~a~ 143 (160)
T 3cit_A 80 DPLAIGPQWLERPGTHLPCVLLLPLRGADEGSFGT-LVLANSVAISAPDGEDIESLQLLATLLAA 143 (160)
T ss_dssp CTTCCSCEEEECTTSSSCEEEEEEEECSSSSEEEE-EEEEESSCCCCCCHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccCcccceeEEEeeecCCCcEEEE-EEEeccCCCCCCCHHHHHHHHHHHHHHHH
Confidence 45656689987776666677776665 33443 12345667778999999999877554443
No 147
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.86 E-value=64 Score=19.24 Aligned_cols=18 Identities=6% Similarity=0.106 Sum_probs=13.9
Q ss_pred eeCCCCCCChHHHHHHHh
Q psy13622 38 KYLEPSTWPPSLLSMLMT 55 (143)
Q Consensus 38 ks~~ld~w~~~~v~~~~~ 55 (143)
-++..+.|+++|..+|..
T Consensus 5 p~~~~~~WT~eE~~~Fe~ 22 (63)
T 2yqk_A 5 SSGIEKCWTEDEVKRFVK 22 (63)
T ss_dssp CCCCCCSCCHHHHHHHHH
T ss_pred CCcCCCCcCHHHHHHHHH
Confidence 345568999999998864
No 148
>3f40_A Uncharacterized NTF2-like protein; YP_677363.1, NTF2-like protein of unknown function, structural genomics; HET: MSE; 1.27A {Cytophaga hutchinsonii atcc 33406}
Probab=21.77 E-value=57 Score=21.20 Aligned_cols=29 Identities=17% Similarity=0.251 Sum_probs=24.6
Q ss_pred CCCHHHHHHHHHHhhhcCCHHHHHHHHHc
Q psy13622 106 NDTQEELNQQLHSSVRTSNLDTSLRLLSQ 134 (143)
Q Consensus 106 ~~~~~~~~~~l~~av~~~~~~~~~~ll~~ 134 (143)
..+..++-++.+.|..++|+..+..||+.
T Consensus 5 ~~~~~~~v~~f~~A~~~gD~~~l~~lla~ 33 (114)
T 3f40_A 5 QITTRDLVLEFIHALNTENFPAAKKRLNE 33 (114)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHTEEE
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHhcCC
Confidence 35677888999999999999998888764
No 149
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.13 E-value=31 Score=20.25 Aligned_cols=19 Identities=16% Similarity=0.249 Sum_probs=14.9
Q ss_pred CCCCCCeeecccceeeccchh
Q psy13622 4 RAADPKWGILNKGVLVCDACC 24 (143)
Q Consensus 4 ga~~P~was~n~gvfiC~~Cs 24 (143)
|+..|.|-.. +.+.|.+|-
T Consensus 1 ~~~~~~~~~~--~~~~CPrCn 19 (49)
T 2e72_A 1 GSSGSSGQDG--GRKICPRCN 19 (49)
T ss_dssp CCSSSSSCCS--SCCCCTTTC
T ss_pred CCCCcccccC--CceeCCccc
Confidence 5667778766 899999994
No 150
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=20.35 E-value=29 Score=21.69 Aligned_cols=12 Identities=33% Similarity=1.035 Sum_probs=9.9
Q ss_pred cceeeccchhhh
Q psy13622 15 KGVLVCDACCSI 26 (143)
Q Consensus 15 ~gvfiC~~Csgi 26 (143)
-|++||..|...
T Consensus 38 pgvyICdeCI~~ 49 (67)
T 1ovx_A 38 PSVYICDECVDL 49 (67)
T ss_dssp SSCEEEHHHHHH
T ss_pred CCCChhHHHHHH
Confidence 389999999764
Done!