RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13622
(143 letters)
>gnl|CDD|214518 smart00105, ArfGap, Putative GTP-ase activating proteins for the
small GTPase, ARF. Putative zinc fingers with GTPase
activating proteins (GAPs) towards the small GTPase,
Arf. The GAP of ARD1 stimulates GTPase hydrolysis for
ARD1 but not ARFs.
Length = 119
Score = 91.2 bits (227), Expect = 9e-25
Identities = 38/103 (36%), Positives = 50/103 (48%), Gaps = 3/103 (2%)
Query: 5 AADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSL 64
A +P W +N GV +C C IHRSLG HIS+V+ L TW L +L N A S+
Sbjct: 18 APNPTWASVNLGVFLCIECSGIHRSLGVHISKVRSLTLDTWTEEELRLLQKGGNENANSI 77
Query: 65 WEHSLCESKTKKKPVPSDPLHPTKAEFIKAKYEQLSFMIRSND 107
WE +L + K D FI AKYE+ F+ +
Sbjct: 78 WESNLDDFSLKPPD---DDDQQKYESFIAAKYEEKLFVPPESA 117
>gnl|CDD|216485 pfam01412, ArfGap, Putative GTPase activating protein for Arf.
Putative zinc fingers with GTPase activating proteins
(GAPs) towards the small GTPase, Arf. The GAP of ARD1
stimulates GTPase hydrolysis for ARD1 but not ARFs.
Length = 117
Score = 90.8 bits (226), Expect = 1e-24
Identities = 36/98 (36%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
Query: 4 RAADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPS 63
A +P W LN G+ +C C +HRSLG HIS+V+ L W P L + N A
Sbjct: 20 GAPNPTWASLNLGIFICIRCSGVHRSLGVHISKVRSLTLDKWTPEQLEFMKAGGNKRANE 79
Query: 64 LWEHSLCESKTKKKPVPSDPLHPTKAEFIKAKYEQLSF 101
WE +L KP PS + FI+AKY + F
Sbjct: 80 FWEANLP----PPKPPPSSSDREKRESFIRAKYVEKLF 113
>gnl|CDD|227651 COG5347, COG5347, GTPase-activating protein that regulates ARFs
(ADP-ribosylation factors), involved in ARF-mediated
vesicular transport [Intracellular trafficking and
secretion].
Length = 319
Score = 52.1 bits (125), Expect = 9e-09
Identities = 36/128 (28%), Positives = 54/128 (42%), Gaps = 4/128 (3%)
Query: 8 PKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSLWEH 67
P W +N GV +C C +HRSLG HIS+VK L W L + N A +E
Sbjct: 31 PTWASVNLGVFLCIDCAGVHRSLGVHISKVKSLTLDNWTEEELRRMEVGGNSNANRFYEK 90
Query: 68 SLCESKTKK-KPVPSDPLHPTKAEFIKAKYEQLSFMIRSNDTQEELNQQLHSSVRTSNLD 126
+L + K ++I+ KYE F+ S+ + + S+ ++D
Sbjct: 91 NLLDQLLLPIKAKYDS---SVAKKYIRKKYELKKFIDDSSSPSDFSSFSASSTRTVDSVD 147
Query: 127 TSLRLLSQ 134
L SQ
Sbjct: 148 DRLDSESQ 155
>gnl|CDD|178661 PLN03114, PLN03114, ADP-ribosylation factor GTPase-activating
protein AGD10; Provisional.
Length = 395
Score = 44.8 bits (105), Expect = 3e-06
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 5 AADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLM 54
A +P W + G+ +C C ++HRSLG HIS V+ +W L M++
Sbjct: 30 AKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSSEQLKMMI 79
>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional.
Length = 422
Score = 31.2 bits (71), Expect = 0.17
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPNY 140
LH +V +N + LL GA+PN
Sbjct: 196 LHYAVYNNNPEFVKYLLDLGANPNL 220
>gnl|CDD|225165 COG2256, MGS1, ATPase related to the helicase subunit of the
Holliday junction resolvase [DNA replication,
recombination, and repair].
Length = 436
Score = 28.7 bits (65), Expect = 0.91
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
Query: 116 LHSSVRTSNLDTSL----RLLSQGADPNY 140
LH SVR S+ D +L R++ G DP Y
Sbjct: 256 LHKSVRGSDPDAALYYLARMIEAGEDPLY 284
>gnl|CDD|217243 pfam02824, TGS, TGS domain. The TGS domain is named after ThrRS,
GTPase, and SpoT. Interestingly, TGS domain was
detected also at the amino terminus of the uridine
kinase from the spirochaete Treponema pallidum (but not
any other organism, including the related spirochaete
Borrelia burgdorferi). TGS is a small domain that
consists of ~50 amino acid residues and is predicted to
possess a predominantly beta-sheet structure. There is
no direct information on the functions of the TGS
domain, but its presence in two types of regulatory
proteins (the GTPases and guanosine polyphosphate
phosphohydrolases/synthetases) suggests a ligand (most
likely nucleotide)-binding, regulatory role.
Length = 60
Score = 27.1 bits (61), Expect = 0.92
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 12 ILNKGVLVCDACCSIHRSLGRH 33
L +G D +IH LG+
Sbjct: 12 ELPRGSTPEDFAYAIHTDLGKK 33
>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to 24
repeated units, and it mediates most of the protein's
binding activities. Repeats 13-24 are especially active,
with known sites of interaction for the Na/K ATPase,
Cl/HCO(3) anion exchanger, voltage-gated sodium channel,
clathrin heavy chain and L1 family cell adhesion
molecules. The ANK repeats are found to form a
contiguous spiral stack such that ion transporters like
the anion exchanger associate in a large central cavity
formed by the ANK repeat spiral, while clathrin and cell
adhesion molecules associate with specific regions
outside this cavity.
Length = 33
Score = 26.4 bits (59), Expect = 0.99
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPNY 140
LH + R +L+ LL GAD N
Sbjct: 6 LHLAARNGHLEVVKLLLEAGADVNA 30
>gnl|CDD|130584 TIGR01521, FruBisAldo_II_B, fructose-bisphosphate aldolase, class
II, Calvin cycle subtype. Members of this family are
class II examples of the enzyme fructose-bisphosphate
aldolase, an enzyme both of glycolysis and (in the
opposite direction) of the Calvin cycle of CO2 fixation.
A deep split separates the tightly conserved yeast/E.
coli/Mycobacterium subtype (all species lacking the
Calvin cycle) represented by model TIGR01520 from a
broader group of aldolases that includes both tagatose-
and fructose-bisphosphate aldolases. This model
represents a distinct, elongated, very well conserved
subtype within the latter group. Most species with this
aldolase subtype have the Calvin cycle.
Length = 347
Score = 28.7 bits (64), Expect = 1.1
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 110 EELNQQLHSSVRTSNLDTSLRLLSQGA 136
EE+ + + VR N+DT LRL S A
Sbjct: 259 EEIVEGIKYGVRKVNIDTDLRLASTAA 285
>gnl|CDD|133436 cd01666, TGS_DRG_C, TGS_DRG_C: DRG (developmentally regulated
GTP-binding protein) represents a family of GTP-binding
proteins that includes two members, DRG1 and DRG2. DRG1
and DRG2 have a C-terminal TGS domain (named after the
ThrRS, GTPase, and SpoT proteins where it occurs) with
a predominantly beta-sheet structure. The function of
TGS is unknown but its presence in two types of
regulatory proteins (the DRG GTPases and guanosine
polyphosphate phosphohydrolases/synthetases) suggests a
ligand (most likely nucleotide)-binding, regulatory
role.
Length = 75
Score = 26.7 bits (60), Expect = 1.6
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Query: 12 ILNKGVLVCDACCSIHRSLGRHISQVKY 39
IL +G V D C IH+ L + Q KY
Sbjct: 20 ILRRGSTVEDVCNKIHKDL---VKQFKY 44
>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional.
Length = 446
Score = 28.1 bits (62), Expect = 1.7
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 106 NDTQEELNQQLHSSVRTSNLDTSLRLLSQGADPN 139
N+T ++ N LH + + +N LL+ GADPN
Sbjct: 66 NETDDDGNYPLHIASKINNNRIVAMLLTHGADPN 99
>gnl|CDD|181691 PRK09196, PRK09196, fructose-1,6-bisphosphate aldolase; Reviewed.
Length = 347
Score = 28.0 bits (63), Expect = 1.8
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 110 EELNQQLHSSVRTSNLDTSLRLLSQGA 136
EE+ + + VR N+DT LRL GA
Sbjct: 261 EEIQEGIKHGVRKVNIDTDLRLAMTGA 287
>gnl|CDD|226995 COG4648, COG4648, Predicted membrane protein [Function unknown].
Length = 201
Score = 27.6 bits (61), Expect = 1.9
Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 8/69 (11%)
Query: 4 RAADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPS 63
RAA + L A C S Q+ YL P +++ +M GG +
Sbjct: 55 RAAGRLQLLTQLWALAGIALCLAVASFMLKTEQLLYLY-----PVVVNAMMLAVFGG--T 107
Query: 64 LWE-HSLCE 71
LW ++ E
Sbjct: 108 LWAGMTIVE 116
>gnl|CDD|233002 TIGR00510, lipA, lipoate synthase. This enzyme is an iron-sulfur
protein. It is localized to mitochondria in yeast and
Arabidopsis. It generates lipoic acid, a thiol
antioxidant that is linked to a specific Lys as
prosthetic group for the pyruvate and
alpha-ketoglutarate dehydrogenase complexes and the
glycine-cleavage system. The family shows strong
sequence conservation [Biosynthesis of cofactors,
prosthetic groups, and carriers, Lipoate].
Length = 302
Score = 27.5 bits (61), Expect = 2.7
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 70 CESKTKKKPVPSDPLHPTK-AEFIKA 94
C+ + P+P DP P K AE IK
Sbjct: 80 CDVAHGRNPLPPDPEEPAKLAETIKD 105
>gnl|CDD|240066 cd04715, BAH_Orc1p_like, BAH, or Bromo Adjacent Homology domain, as
present in the Schizosaccharomyces pombe homolog of
Saccharomyces cerevisiae Orc1p and similar proteins.
Orc1 is part of the Yeast Sir1-origin recognition
complex, the Orc1p BAH doman functions in epigenetic
silencing. BAH domains are found in a variety of
proteins playing roles in transcriptional silencing and
the remodeling of chromatin. It is assumed that in most
or all of these instances the BAH domain mediates
protein-protein interactions.
Length = 159
Score = 26.3 bits (58), Expect = 4.8
Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 69 LCESKTKKKPVPSDPLHPTKAEFI 92
+C S+ + P PSD + PT A+F+
Sbjct: 117 VCISEDFRNPQPSDGI-PTSADFL 139
>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies).
Length = 91
Score = 25.7 bits (57), Expect = 5.0
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPNY 140
LH + R NL+ LL GAD N
Sbjct: 65 LHLAARNGNLEIVKLLLEHGADINL 89
>gnl|CDD|224264 COG1345, FliD, Flagellar capping protein [Cell motility and
secretion].
Length = 483
Score = 26.6 bits (59), Expect = 5.7
Identities = 9/31 (29%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 87 TKAEFIKAKYEQLSFMIRS-NDTQEELNQQL 116
E K ++ L M+ N L QQL
Sbjct: 447 AAEERYKTQFNTLDDMMTQMNSQSSYLTQQL 477
>gnl|CDD|215236 PLN02428, PLN02428, lipoic acid synthase.
Length = 349
Score = 26.3 bits (58), Expect = 6.5
Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 70 CESKTKKKPVPSDPLHPTK-AEFIKA 94
C KT + P P DP P AE I +
Sbjct: 119 CAVKTSRTPPPPDPDEPENVAEAIAS 144
>gnl|CDD|215094 PLN00188, PLN00188, enhanced disease resistance protein (EDR2);
Provisional.
Length = 719
Score = 26.3 bits (58), Expect = 7.5
Identities = 11/30 (36%), Positives = 23/30 (76%), Gaps = 1/30 (3%)
Query: 99 LSFMIRSNDTQEELNQQLHSSVRTSNLDTS 128
++F++++N T EEL ++L +VR S+++ S
Sbjct: 679 MAFLVQAN-TYEELPERLIGAVRVSHVELS 707
>gnl|CDD|235943 PRK07133, PRK07133, DNA polymerase III subunits gamma and tau;
Validated.
Length = 725
Score = 26.3 bits (58), Expect = 7.9
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 8/46 (17%)
Query: 100 SFMIRSNDTQEELNQQLHSSVRTSNLDTSLRLLS----QGADPNYF 141
F + SN+ L L+S ++ L +L+ QG DP
Sbjct: 239 LFGLVSNENLINLLNLLYSK----DIKEVLNILNQIKEQGIDPELL 280
>gnl|CDD|182247 PRK10115, PRK10115, protease 2; Provisional.
Length = 686
Score = 26.0 bits (57), Expect = 8.9
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 31 GRHISQVKYLEPSTW 45
G H SQV+Y EP+ W
Sbjct: 614 GLHDSQVQYWEPAKW 628
>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate
protein-protein interactions in very diverse families of
proteins. The number of ANK repeats in a protein can
range from 2 to over 20 (ankyrins, for example). ANK
repeats may occur in combinations with other types of
domains. The structural repeat unit contains two
antiparallel helices and a beta-hairpin, repeats are
stacked in a superhelical arrangement; this alignment
contains 4 consecutive repeats.
Length = 126
Score = 25.4 bits (56), Expect = 9.3
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPNY 140
LH + +L+ LL GAD N
Sbjct: 11 LHLAASNGHLEVVKLLLENGADVNA 35
Score = 25.4 bits (56), Expect = 9.6
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPN 139
LH + + +L+ LL +GAD N
Sbjct: 44 LHLAAKNGHLEIVKLLLEKGADVN 67
>gnl|CDD|236778 PRK10859, PRK10859, membrane-bound lytic transglycosylase F;
Provisional.
Length = 482
Score = 26.0 bits (58), Expect = 9.5
Identities = 12/45 (26%), Positives = 20/45 (44%)
Query: 73 KTKKKPVPSDPLHPTKAEFIKAKYEQLSFMIRSNDTQEELNQQLH 117
K V + H + +K KY +LS+ + EEL +Q+
Sbjct: 148 KGGTLTVAAGSSHVETLQELKKKYPELSWEESDDKDSEELLEQVA 192
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.129 0.393
Gapped
Lambda K H
0.267 0.0714 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,827,354
Number of extensions: 554958
Number of successful extensions: 501
Number of sequences better than 10.0: 1
Number of HSP's gapped: 498
Number of HSP's successfully gapped: 33
Length of query: 143
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 56
Effective length of database: 7,078,804
Effective search space: 396413024
Effective search space used: 396413024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.6 bits)