RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13622
(143 letters)
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats,
metal binding protein; 2.10A {Mus musculus} SCOP:
d.211.1.1 g.45.1.1
Length = 278
Score = 123 bits (310), Expect = 7e-36
Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 2/135 (1%)
Query: 5 AADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSL 64
A DP W N G+L C C IHR LG H S+++ L S L + + N G +
Sbjct: 25 APDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKNIGNAGFNEI 84
Query: 65 WEHSLCESKTKKKPVPSDPLHPTKAEFIKAKYEQLSFMIRSNDTQEELNQQLHSSVRTSN 124
E L S+ KP P + ++I AKY + + + + L +V+T +
Sbjct: 85 MECCL-PSEDPVKPNPGSD-MIARKDYITAKYMERRYARKKHADTAAKLHSLCEAVKTRD 142
Query: 125 LDTSLRLLSQGADPN 139
+ L+ + G D
Sbjct: 143 IFGLLQAYADGVDLT 157
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium,
SGC, metal binding protein; 2.06A {Homo sapiens}
Length = 301
Score = 121 bits (305), Expect = 8e-35
Identities = 39/138 (28%), Positives = 58/138 (42%), Gaps = 6/138 (4%)
Query: 5 AADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSL 64
AADP W N GVL C C +HR LG S+++ L PS L + + + N +
Sbjct: 50 AADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNMGNTSFNEV 109
Query: 65 WEHSLCESKTKKKPVPSDPLHPTKAEFIKAKYEQLSFMIRSNDTQEELNQQLHSSVRTSN 124
E L S KP T+ ++I AKY + F R Q+L +++ +
Sbjct: 110 MEAQL-PSHGGPKPSAESD-MGTRRDYIMAKYVEHRFARRCTPE----PQRLWTAICNRD 163
Query: 125 LDTSLRLLSQGADPNYFY 142
L + L + G D
Sbjct: 164 LLSVLEAFANGQDFGQPL 181
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 116 bits (293), Expect = 8e-32
Identities = 39/136 (28%), Positives = 59/136 (43%), Gaps = 6/136 (4%)
Query: 5 AADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSL 64
AADP W N GVL C C +HR LG S+++ L PS L + + + N +
Sbjct: 31 AADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNMGNTSFNEV 90
Query: 65 WEHSLCESKTKKKPVPSDPLHPTKAEFIKAKYEQLSFMIRSNDTQEELNQQLHSSVRTSN 124
E L S KP + T+ ++I AKY + F R Q+L +++ +
Sbjct: 91 MEAQL-PSHGGPKPSAESDM-GTRRDYIMAKYVEHRFARRCTPE----PQRLWTAICNRD 144
Query: 125 LDTSLRLLSQGADPNY 140
L + L + G D
Sbjct: 145 LLSVLEAFANGQDFGQ 160
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing
protein 1; arfgap domain, zinc-binding module, GTPase
activ metal-binding, nitration; 2.30A {Homo sapiens}
Length = 368
Score = 111 bits (278), Expect = 2e-30
Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 2/119 (1%)
Query: 5 AADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSL 64
P+W +N GV +C C IHRSLG H S+V+ L +W P L+ ++ L N +
Sbjct: 53 EPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCELGNVIINQI 112
Query: 65 WEHSLCESKTKKKPVPSDPLHPTKAEFIKAKYEQLSFMIRSNDTQEELNQQLHSSVRTS 123
+E + E+ KKP PS K +I AKY + F+ + + + + +
Sbjct: 113 YEARV-EAMAVKKPGPSCSRQ-EKEAWIHAKYVEKKFLTKLPEIRGRRGGRGRPRGQPP 169
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural
genomics, structural genomics consortium, SGC, protein
transport; 1.90A {Homo sapiens}
Length = 134
Score = 91.0 bits (226), Expect = 1e-24
Identities = 35/103 (33%), Positives = 52/103 (50%), Gaps = 6/103 (5%)
Query: 5 AADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSL 64
+ P+W N GV +C C IHR+LG HIS+VK + W + + + NG A L
Sbjct: 35 SKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCMQEMGNGKANRL 94
Query: 65 WEHSLCESKTKKKPVPSDPLHPTKAEFIKAKYEQLSFMIRSND 107
+E L +T ++P + FI+ KYE+ +M RS D
Sbjct: 95 YEAYL--PETFRRPQIDPAV----EGFIRDKYEKKKYMDRSLD 131
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 141
Score = 87.6 bits (217), Expect = 2e-23
Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 6/101 (5%)
Query: 5 AADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSL 64
A P+W N GV +C C IHR+LG HIS+VK + W + + + N A L
Sbjct: 37 AKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTAEQIQCMQDMGNTKARLL 96
Query: 65 WEHSLCESKTKKKPVPSDPLHPTKAEFIKAKYEQLSFMIRS 105
+E +L + ++P FI+ KYE+ + ++
Sbjct: 97 YEANL--PENFRRPQTDQA----VEFFIRDKYEKKKYYDKN 131
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural
genomics consortium, GTPase activation, SGC, binding,
nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens}
PDB: 3feh_A* 3fm8_C 3mdb_C*
Length = 386
Score = 87.1 bits (215), Expect = 3e-21
Identities = 33/144 (22%), Positives = 57/144 (39%), Gaps = 9/144 (6%)
Query: 5 AADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSL 64
A DP W GV +C +C IHR++ +S+VK + W + + + + N A +
Sbjct: 42 APDPDWASYTLGVFICLSCSGIHRNIP-QVSKVKSVRLDAWEEAQVEFMASHGNDAARAR 100
Query: 65 WEHSLCESKTKKKPVPSDPLHPTKAEFIKAKYEQLSFM-----IRSNDTQEELNQQLHSS 119
+E + +P PSD + ++I+AKYE+ F+ + E
Sbjct: 101 FESKV--PSFYYRPTPSDC-QLLREQWIRAKYERQEFIYPEKQEPYSAGYREGFLWKRGR 157
Query: 120 VRTSNLDTSLRLLSQGADPNYFYQ 143
L L + YF +
Sbjct: 158 DNGQFLSRKFVLTEREGALKYFNR 181
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein,
REV-interacting protein, human immunodeficiency virus,
AIDS, structural genomics; 1.48A {Homo sapiens} PDB:
2d9l_A
Length = 140
Score = 79.8 bits (197), Expect = 3e-20
Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 4/98 (4%)
Query: 5 AADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSL 64
P + + G VC +C R L +VK + +T+ + L N +
Sbjct: 33 QRGPTYVNMTVGSFVCTSCSGSLRGLNPP-HRVKSISMTTFTQQEIEFLQKHGNEVCKQI 91
Query: 65 WEHSLCESKTKKKPVPSDPLHPTKAEFIKAKYEQLSFM 102
W + ++ P DP EF++ KYE+ +
Sbjct: 92 WLGLF-DDRSSAIPDFRDP--QKVKEFLQEKYEKKRWY 126
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein,
cysteine-rich motif, GTPase activation; 2.00A
{Cryptosporidium parvum iowa II}
Length = 138
Score = 73.3 bits (180), Expect = 1e-17
Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 7/94 (7%)
Query: 5 AADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSL 64
+ +P W L+ V +C C S HR +G HIS V+ + + P L + NG A +
Sbjct: 44 SRNPTWLSLSFAVFICLNCSSDHRKMGVHISFVRSSDLDKFTPIQLVRMDIGGNGRARNY 103
Query: 65 WEHSLCESKTKKKPVPSDPLHPTKAEFIKAKYEQ 98
++ L + S + +Y+Q
Sbjct: 104 FKQVLGVN-------FSPKTKEYASSICGRQYKQ 130
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein
trafficking, hydrolase AC; 2.40A {Plasmodium falciparum
3D7}
Length = 163
Score = 72.3 bits (177), Expect = 4e-17
Identities = 22/137 (16%), Positives = 52/137 (37%), Gaps = 4/137 (2%)
Query: 5 AADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSL 64
++P W +N G+ +C C +HRSLG HIS V+ ++ + L + N +
Sbjct: 30 ISNPDWVSVNHGIFLCINCSGVHRSLGVHISIVRSIKMDIFTDEQLKYIDKGGNKKCQTY 89
Query: 65 WEHSLCESKTKKKPVPSDPLHPTKAEFIKAKYEQLSFMIRSNDTQEELNQQLHSSVRTSN 124
E+ ++ + +++ + + + L + R N
Sbjct: 90 LENYGISDFIPERK-YRTKAADHYRKILRSIVHNVDP---PAPLPLDEGKSLINYGRNEN 145
Query: 125 LDTSLRLLSQGADPNYF 141
++ + + +P++
Sbjct: 146 VNENNKNQYSNEEPDFI 162
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural
genomics consorti ER-golgi transport, golgi apparatus,
GTPase activation; 2.40A {Homo sapiens}
Length = 147
Score = 69.9 bits (171), Expect = 2e-16
Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 3/95 (3%)
Query: 5 AADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSL 64
A +P+W + G+ +C C HR LG H+S V+ + W L + N
Sbjct: 46 AFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGNAKFREF 105
Query: 65 WEHSLCESKTKKKPVPSDPLHPTKAEFIKAKYEQL 99
E + + A + K L
Sbjct: 106 LESQED---YDPCWSLQEKYNSRAAALFRDKVVAL 137
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural
genomics, structural genomics consortium, SGC, metal
binding protein; 1.80A {Homo sapiens}
Length = 144
Score = 68.4 bits (167), Expect = 7e-16
Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 6/96 (6%)
Query: 5 AADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLE-PSTWPPSLLSMLMTLTNGGAPS 63
A +P W + GV +C C +HRSLG H+S ++ E S W L + N A +
Sbjct: 45 AKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNWNWFQLRCMQVGGNANATA 104
Query: 64 LWEHSLCESKTKKKPVPSDPLHPTKAEFIKAKYEQL 99
+ C + S A+ + K QL
Sbjct: 105 FFRQHGCTANDANTKYNSR-----AAQMYREKIRQL 135
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3;
arfgap domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 149
Score = 68.5 bits (167), Expect = 8e-16
Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 6/97 (6%)
Query: 5 AADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLE-PSTWPPSLLSMLMTLTNGGAPS 63
A +P W + GV +C C HRSLG H+S ++ E S W L + N A S
Sbjct: 37 AKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCMQVGGNASASS 96
Query: 64 LWEHSLCESKTKKKPVPSDPLHPTKAEFIKAKYEQLS 100
+ C + S A+ + K + L+
Sbjct: 97 FFHQHGCSTNDTNAKYNSR-----AAQLYREKIKSLA 128
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation
factor 1; structural genomics consortium, GTPase
activation; HET: GDP; 2.80A {Homo sapiens}
Length = 329
Score = 46.8 bits (111), Expect = 4e-07
Identities = 27/134 (20%), Positives = 43/134 (32%), Gaps = 5/134 (3%)
Query: 5 AADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPS-LLSMLMTLTNGGAPS 63
A +P+W + G+ +C C HR LG H+S V+ + W L M GG
Sbjct: 45 AFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKM----KAGGNAK 100
Query: 64 LWEHSLCESKTKKKPVPSDPLHPTKAEFIKAKYEQLSFMIRSNDTQEELNQQLHSSVRTS 123
E + + + A + K L+ + R
Sbjct: 101 FREFLESQEDYDPCWSLQEKYNSRAAALFRDKVVALAEGREWSLESSPAQNWTPPQPRGL 160
Query: 124 NLDTSLRLLSQGAD 137
+R+L G D
Sbjct: 161 FGKKEMRILMVGLD 174
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.5 bits (76), Expect = 0.018
Identities = 24/129 (18%), Positives = 39/129 (30%), Gaps = 39/129 (30%)
Query: 41 EPSTWPPSL----LSMLMTLTNGGAPS---------LWE-----------HSLCESKTKK 76
EP+T P L L + +L L E H+L K
Sbjct: 53 EPTT-PAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHAL----AAK 107
Query: 77 KPVPSDPLHPTKAEFIKAKYEQLSFMIRSNDTQEELNQQLHSSVRTSNLDTSLRLLS--- 133
+D E IK R D + S++ + + + +L++
Sbjct: 108 LLQENDTTLVKTKELIKNYITARIMAKRPFDKKSN------SALFRAVGEGNAQLVAIFG 161
Query: 134 -QGADPNYF 141
QG +YF
Sbjct: 162 GQGNTDDYF 170
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit);
transcription factor, IKB/NFKB complex; 2.30A {Homo
sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Length = 236
Score = 31.0 bits (71), Expect = 0.10
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPN 139
LH +V T+ + + LL G DP
Sbjct: 49 LHLAVITNQPEIAEALLGAGCDPE 72
Score = 28.7 bits (65), Expect = 0.52
Identities = 11/24 (45%), Positives = 12/24 (50%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPN 139
LH +V N D LL GAD N
Sbjct: 155 LHLAVDLQNPDLVSLLLKCGADVN 178
Score = 26.7 bits (60), Expect = 2.4
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPN 139
LH + L L+S GAD N
Sbjct: 121 LHLASIHGYLGIVELLVSLGADVN 144
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell
cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A
2f8x_K 3nbn_B 3v79_K* 1ot8_A
Length = 253
Score = 29.7 bits (68), Expect = 0.28
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPN 139
LH + R S D + RLL AD N
Sbjct: 61 LHLAARYSRSDAAKRLLEASADAN 84
Score = 27.8 bits (63), Expect = 1.1
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPN 139
LH + +N+D ++ LL GA+ +
Sbjct: 161 LHWAAAVNNVDAAVVLLKNGANKD 184
Score = 26.3 bits (59), Expect = 3.5
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPN 139
L + R + L++ AD N
Sbjct: 128 LILAARLAVEGMLEDLINSHADVN 151
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix,
ankyrin repeat, gene regulation/signalling protein/DNA
complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Length = 373
Score = 29.1 bits (66), Expect = 0.52
Identities = 7/24 (29%), Positives = 9/24 (37%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPN 139
L +V L+ GADP
Sbjct: 170 LMLAVLARRRRLVAYLMKAGADPT 193
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor,
cytoplasm, phosphorylation, P53 binding protein, ANK
repeat, SH3 domain; 2.10A {Homo sapiens}
Length = 229
Score = 28.8 bits (65), Expect = 0.59
Identities = 5/24 (20%), Positives = 11/24 (45%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPN 139
L + T L+ + + + DP+
Sbjct: 25 LLDAALTGELEVVQQAVKEMNDPS 48
Score = 26.8 bits (60), Expect = 2.2
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPN 139
LH+++ +N L++ GA+ N
Sbjct: 58 LHNAICGANYSIVDFLITAGANVN 81
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein
complex, transcription factors, nuclear localization,
DNA binding protein; 2.05A {Mus musculus} SCOP:
d.211.1.1 PDB: 1k3z_D
Length = 282
Score = 28.7 bits (65), Expect = 0.62
Identities = 9/24 (37%), Positives = 10/24 (41%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPN 139
LH +V LL GADP
Sbjct: 196 LHLAVEAQAASVLELLLKAGADPT 219
Score = 26.7 bits (60), Expect = 2.9
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPN 139
L S++ N + L + GA
Sbjct: 229 LGSALLRPNPILARLLRAHGAPEP 252
Score = 26.4 bits (59), Expect = 4.1
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPN 139
LH + T +L + GA
Sbjct: 49 LHLAAILGEASTVEKLYAAGAGVL 72
Score = 25.2 bits (56), Expect = 8.5
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPN 139
LH +V + + L GAD N
Sbjct: 162 LHVAVIHKDAEMVRLLRDAGADLN 185
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.7 bits (63), Expect = 0.83
Identities = 28/171 (16%), Positives = 49/171 (28%), Gaps = 69/171 (40%)
Query: 38 KYLE--PSTWP-------PSLLSMLMTLTNGGAPSLWE---HSLCESKTKKKPVPSDPLH 85
KYL+ P P P LS++ G + W+ H C+ T + L
Sbjct: 309 KYLDCRPQDLPREVLTTNPRRLSIIAESIRDG-LATWDNWKHVNCDKLTTIIESSLNVLE 367
Query: 86 PTKAEFIKAKYEQLS-FM----------------IRSNDTQEELNQ-------------- 114
P AE+ + +++LS F + +D +N+
Sbjct: 368 P--AEY-RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES 424
Query: 115 --QLHS----SVRTSNLDTSL--RLLSQ-----GADP---------NYFYQ 143
+ S + +L ++ D YFY
Sbjct: 425 TISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS 475
Score = 27.9 bits (61), Expect = 1.4
Identities = 14/91 (15%), Positives = 32/91 (35%), Gaps = 6/91 (6%)
Query: 15 KGVLVCDACCS--IHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSLWEHSLCES 72
K + D C S + + I + ++ P ++L ML L P+ S +
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS-PETVLEMLQKLLYQIDPNW--TSRSDH 219
Query: 73 KTKKKPVPSDPLHPTKAEFIKAKYEQLSFMI 103
+ + + +K+K + ++
Sbjct: 220 -SSNIKLRIHSIQAELRRLLKSKPYENCLLV 249
Score = 26.7 bits (58), Expect = 3.9
Identities = 20/115 (17%), Positives = 40/115 (34%), Gaps = 24/115 (20%)
Query: 26 IHRSLGRHISQVKYLEPSTWPPSL---LSML-----MTLTNGGAPSLWEHSLCESKTKKK 77
+ +G H+ +++ E T + L T A ++L + K K
Sbjct: 473 FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP 532
Query: 78 PV-PSDP------------LHPTKAEFIKAKYE---QLSFMIRSNDTQEELNQQL 116
+ +DP L + I +KY +++ M EE ++Q+
Sbjct: 533 YICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQV 587
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription
regulation, autoantibody; 2.58A {Homo sapiens}
Length = 261
Score = 28.2 bits (64), Expect = 0.92
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPN 139
LH+ RT++ + + L+ GAD
Sbjct: 170 LHAVARTASEELACLLMDFGADTQ 193
Score = 26.2 bits (59), Expect = 3.4
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPN 139
L+ + +LL GAD N
Sbjct: 138 LYLACENQQRACVKKLLESGADVN 161
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein;
2.70A {Homo sapiens} SCOP: d.211.1.1
Length = 437
Score = 28.2 bits (64), Expect = 0.92
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPN 139
LH +V +NLD LL +G P+
Sbjct: 183 LHVAVHHNNLDIVKLLLPRGGSPH 206
Score = 26.7 bits (60), Expect = 3.5
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPN 139
LH + +L LL +GA PN
Sbjct: 18 LHVASFMGHLPIVKNLLQRGASPN 41
Score = 26.3 bits (59), Expect = 3.7
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPN 139
LH + R + + + LL A N
Sbjct: 51 LHMAARAGHTEVAKYLLQNKAKVN 74
Score = 26.3 bits (59), Expect = 4.6
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPN 139
LH + + + + LLS+ A+ N
Sbjct: 249 LHLAAQEGHAEMVALLLSKQANGN 272
Score = 25.9 bits (58), Expect = 5.0
Identities = 4/24 (16%), Positives = 10/24 (41%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPN 139
LH + ++ + L+ G +
Sbjct: 282 LHLVAQEGHVPVADVLIKHGVMVD 305
Score = 25.9 bits (58), Expect = 5.3
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPN 139
LH + R + + LL A+PN
Sbjct: 84 LHCAARIGHTNMVKLLLENNANPN 107
Score = 25.9 bits (58), Expect = 5.5
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPN 139
LH + N+ LL AD N
Sbjct: 315 LHVASHYGNIKLVKFLLQHQADVN 338
Score = 25.9 bits (58), Expect = 6.1
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPN 139
LH + + + D LL GA PN
Sbjct: 348 LHQAAQQGHTDIVTLLLKNGASPN 371
Score = 25.5 bits (57), Expect = 7.7
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPN 139
LH + R +++T L LL + A
Sbjct: 117 LHIAAREGHVETVLALLEKEASQA 140
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin
repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A
1ymp_A
Length = 223
Score = 27.8 bits (63), Expect = 1.3
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPN 139
LH + R S D + RLL AD N
Sbjct: 29 LHLAARYSRSDAAKRLLEASADAN 52
Score = 27.0 bits (61), Expect = 2.2
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPN 139
LH + +N+D ++ LL GA+ +
Sbjct: 129 LHWAAAVNNVDAAVVLLKNGANKD 152
Score = 26.2 bits (59), Expect = 3.3
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPN 139
L + R + L++ AD N
Sbjct: 96 LILAARLAVEGMLEDLINSHADVN 119
Score = 25.1 bits (56), Expect = 8.1
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPN 139
L + R + +T+ LL A+ +
Sbjct: 162 LFLAAREGSYETAKVLLDHFANRD 185
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 27.6 bits (62), Expect = 1.4
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPN 139
L S D R++ + DP+
Sbjct: 41 LLDSSLEGEFDLVQRIIYEVDDPS 64
Score = 25.7 bits (57), Expect = 6.7
Identities = 5/24 (20%), Positives = 8/24 (33%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPN 139
L RT+ T ++ G
Sbjct: 9 LPPGKRTNLRKTGSERIAHGMRVK 32
Score = 25.3 bits (56), Expect = 8.8
Identities = 2/24 (8%), Positives = 3/24 (12%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPN 139
+ S L
Sbjct: 143 KCEEMEEGYTQCSQFLYGVQEKMG 166
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT
signaling, POL ribosylation, transferase-signaling
protein complex; 2.00A {Mus musculus}
Length = 351
Score = 27.5 bits (62), Expect = 1.4
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPN 139
LH + + ++ LLS GADP
Sbjct: 128 LHEAASKNRVEVCSLLLSHGADPT 151
Score = 27.1 bits (61), Expect = 2.3
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPN 139
LH + +L T LLS G+DP+
Sbjct: 284 LHRAALAGHLQTCRLLLSYGSDPS 307
Score = 25.9 bits (58), Expect = 5.4
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPN 139
LH + ++ D L GA N
Sbjct: 251 LHVAAERAHNDVMEVLHKHGAKMN 274
>2zuv_A Lacto-N-biose phosphorylase; beta-alpha-barrel, TIM barrel,
glycosyltransferase, transferase; HET: NDG; 1.85A
{Bifidobacterium longum} PDB: 2zus_A* 2zuu_A* 2zut_A*
2zuw_A*
Length = 759
Score = 27.6 bits (61), Expect = 1.6
Identities = 18/76 (23%), Positives = 26/76 (34%), Gaps = 14/76 (18%)
Query: 23 CCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSLWEHSLCESKTKKKPVPSD 82
+ H V +L W P + M LTN W K+ +P D
Sbjct: 137 TVHVSGVAAWHEYTVSFLAYIIWDP--VEMYNHLTND-----W-------GDKEHEIPFD 182
Query: 83 PLHPTKAEFIKAKYEQ 98
HP +F+ +EQ
Sbjct: 183 IYHPATRKFVFDTFEQ 198
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase
(M130), serine/threonine protein phosphatase PP1-beta
(OR delta) catalytic subunit; myosin phosphatase; HET:
PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Length = 299
Score = 27.5 bits (62), Expect = 1.6
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPN 139
++ + + + LRLL +GAD N
Sbjct: 44 FLAACSSGDTEEVLRLLERGADIN 67
Score = 26.3 bits (59), Expect = 3.7
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPN 139
LH + N+D L+ GA+ N
Sbjct: 77 LHQACIDDNVDMVKFLVENGANIN 100
Score = 25.9 bits (58), Expect = 5.9
Identities = 4/28 (14%), Positives = 6/28 (21%)
Query: 112 LNQQLHSSVRTSNLDTSLRLLSQGADPN 139
+ R D L S +
Sbjct: 166 IEAARKEEERIMLRDARQWLNSGHINDV 193
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix,
SH3, ankyrin repeat, signaling protein, ANK repeat,
cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB:
3ehq_A
Length = 222
Score = 27.2 bits (61), Expect = 1.7
Identities = 5/25 (20%), Positives = 9/25 (36%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPNY 140
+ ++ T T L + D Y
Sbjct: 16 VFRALYTFEPRTPDELYIEEGDIIY 40
Score = 26.4 bits (59), Expect = 3.5
Identities = 6/24 (25%), Positives = 8/24 (33%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPN 139
LH + + NL L N
Sbjct: 77 LHEAAKRGNLSWLRECLDNRVGVN 100
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural
genomics of pathogenic protozoa consortium, SGPP, ANK
repeat; 2.90A {Leishmania major}
Length = 364
Score = 27.1 bits (61), Expect = 1.8
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPN 139
+H + R D RL+ G P
Sbjct: 24 IHVAARKGQTDEVRRLIETGVSPT 47
Score = 27.1 bits (61), Expect = 2.2
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPN 139
LH ++ + D ++R + G D N
Sbjct: 215 LHWAILINWEDVAMRFVEMGIDVN 238
Score = 25.6 bits (57), Expect = 6.4
Identities = 2/24 (8%), Positives = 5/24 (20%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPN 139
+ + L+ A
Sbjct: 327 AVKRKKKAAPAVKRMKLAPSAPVR 350
Score = 25.2 bits (56), Expect = 8.1
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPN 139
LH + + +DT+ L S G +
Sbjct: 57 LHLACKFGCVDTAKYLASVGEVHS 80
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat,
helix, extended loop, four repeat, PR ANK repeat,
disease mutation, metal-binding; 2.00A {Homo sapiens}
SCOP: k.37.1.1
Length = 137
Score = 26.6 bits (60), Expect = 1.9
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPN 139
LH + + ++D LLS GA N
Sbjct: 80 LHDAAKNGHVDIVKLLLSYGASRN 103
Score = 26.6 bits (60), Expect = 2.1
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPN 139
LH + ++ + LL G+DPN
Sbjct: 14 LHIASIKGDIPSVEYLLQNGSDPN 37
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription
factors, ikappab proteins; 1.86A {Homo sapiens} SCOP:
d.211.1.1 PDB: 1k1b_A
Length = 241
Score = 27.0 bits (61), Expect = 1.9
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPN 139
LH +V T+ L++ GA P
Sbjct: 50 LHLAVITTLPSVVRLLVTAGASPM 73
Score = 25.9 bits (58), Expect = 4.6
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPN 139
L +V ++L LL GA+ N
Sbjct: 154 LIHAVENNSLSMVQLLLQHGANVN 177
Score = 25.9 bits (58), Expect = 5.1
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPN 139
LH +V T +T LL +GAD +
Sbjct: 120 LHVAVNTECQETVQLLLERGADID 143
Score = 25.5 bits (57), Expect = 6.4
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPN 139
LHS+ L L+ GAD +
Sbjct: 187 LHSASGRGLLPLVRTLVRSGADSS 210
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.8 bits (58), Expect = 1.9
Identities = 7/25 (28%), Positives = 10/25 (40%), Gaps = 6/25 (24%)
Query: 114 QQLHSSVRTSNLDTSLRLLSQGADP 138
Q L L SL+L + + P
Sbjct: 20 QAL------KKLQASLKLYADDSAP 38
Score = 26.1 bits (56), Expect = 3.5
Identities = 6/31 (19%), Positives = 10/31 (32%), Gaps = 13/31 (41%)
Query: 36 QVKYLEPS--TWPPSLLSMLMTLTNGGAPSL 64
+K L+ S + AP+L
Sbjct: 21 ALKKLQASLKLYAD-----------DSAPAL 40
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A;
1.80A {Homo sapiens} SCOP: d.211.1.1
Length = 285
Score = 27.1 bits (61), Expect = 2.2
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPN 139
L +V+ ++D +LL GA+ N
Sbjct: 9 LIKAVQNEDVDLVQQLLEGGANVN 32
Score = 27.1 bits (61), Expect = 2.3
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPN 139
LH++V+ S D LL GADP
Sbjct: 43 LHNAVQMSREDIVELLLRHGADPV 66
Score = 25.9 bits (58), Expect = 5.4
Identities = 5/24 (20%), Positives = 9/24 (37%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPN 139
L +V + L +GA +
Sbjct: 257 LLLAVELKLKKIAELLCKRGASTD 280
Score = 25.5 bits (57), Expect = 6.2
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 4/28 (14%)
Query: 116 LHSSVRTSNLDTSLR----LLSQGADPN 139
L ++ +S+ LL GAD N
Sbjct: 186 LIHALLSSDDSDVEAITHLLLDHGADVN 213
Score = 25.1 bits (56), Expect = 8.8
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPN 139
+ ++ LS+GAD N
Sbjct: 76 FLLAAIAGSVKLLKLFLSKGADVN 99
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6,
ankyrin reapeat, ANK RE calcium channel, calcium
transport, calmodulin-binding; 1.70A {Mus musculus}
Length = 232
Score = 26.8 bits (60), Expect = 2.3
Identities = 5/24 (20%), Positives = 9/24 (37%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPN 139
L + + + L+ GAD
Sbjct: 125 LSFAACVGSEEIVRLLIEHGADIR 148
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and
SOCS box-containing...; ASB9, ANK repeat, L-shaped,
structural protein; 2.20A {Homo sapiens}
Length = 285
Score = 26.7 bits (60), Expect = 2.5
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPN 139
LH+ VRT++ + + L+ GAD
Sbjct: 226 LHAVVRTASEELACLLMDFGADTQ 249
Score = 25.5 bits (57), Expect = 7.8
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPN 139
L+ + +LL GAD N
Sbjct: 194 LYLACENQQRACVKKLLESGADVN 217
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate
recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo
sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A
3twq_A 3twu_A 2y0i_S*
Length = 165
Score = 26.2 bits (59), Expect = 3.1
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPN 139
LH + + LL GADP
Sbjct: 112 LHEAAAKGKYEICKLLLQHGADPT 135
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center F or structural
genomics, MCSG; 1.77A {Leptotrichia buccalis}
Length = 186
Score = 26.2 bits (58), Expect = 3.2
Identities = 3/24 (12%), Positives = 4/24 (16%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPN 139
L R + N
Sbjct: 158 LEFVKRCQKPIALKMMEDYIKKYN 181
Score = 25.0 bits (55), Expect = 8.9
Identities = 3/24 (12%), Positives = 9/24 (37%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPN 139
+ ++ + L L +G +
Sbjct: 10 VSAAAMLGTYEDFLELFEKGYEDK 33
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Length = 285
Score = 26.3 bits (59), Expect = 3.4
Identities = 1/27 (3%), Positives = 9/27 (33%)
Query: 113 NQQLHSSVRTSNLDTSLRLLSQGADPN 139
+V + + + ++ + +
Sbjct: 222 YSANLENVLLDDAEIAKMIIEKHVEYK 248
Score = 26.0 bits (58), Expect = 4.3
Identities = 5/24 (20%), Positives = 12/24 (50%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPN 139
+H +++ ++D + LL N
Sbjct: 165 IHITIKNGHVDMMILLLDYMTSTN 188
Score = 25.6 bits (57), Expect = 7.0
Identities = 1/24 (4%), Positives = 8/24 (33%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPN 139
+ ++ +++ L +
Sbjct: 199 IKLAIDNKDIEMLQALFKYDINIY 222
Score = 25.2 bits (56), Expect = 9.0
Identities = 4/24 (16%), Positives = 10/24 (41%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPN 139
L+ +V + N+ T + +
Sbjct: 99 LYYAVDSGNMQTVKLFVKKNWRLM 122
>3pjv_D Cyclic dimeric GMP binding protein; LAPG, lyase; 1.77A {Pseudomonas
fluorescens}
Length = 130
Score = 26.0 bits (57), Expect = 3.9
Identities = 10/39 (25%), Positives = 17/39 (43%)
Query: 100 SFMIRSNDTQEELNQQLHSSVRTSNLDTSLRLLSQGADP 138
SFM+ ++ + QL S + + +L L DP
Sbjct: 1 SFMVSLESSRTQYVNQLRSHAQDAATALALSLTPNIDDP 39
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin
repeat, signaling protein; NMR {Mus musculus} SCOP:
i.11.1.1
Length = 136
Score = 25.5 bits (57), Expect = 4.5
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPN 139
+H + R LDT + L GA +
Sbjct: 82 VHDAAREGFLDTLVVLHRAGARLD 105
Score = 24.7 bits (55), Expect = 8.3
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPN 139
L ++ ++T +LL GADPN
Sbjct: 16 LATAAARGQVETVRQLLEAGADPN 39
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats,
cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP:
d.211.1.1
Length = 327
Score = 26.1 bits (57), Expect = 4.7
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPN 139
L+ + R N+ LL GADP
Sbjct: 287 LNIAARLGNISIVDALLDYGADPF 310
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch,
ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB:
3ixe_A 2kbx_A
Length = 179
Score = 25.9 bits (58), Expect = 5.2
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPN 139
LH + + D +LL AD N
Sbjct: 76 LHLAASHGHRDIVQKLLQYKADIN 99
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle
inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A
1mx2_A 1mx6_A
Length = 162
Score = 25.4 bits (57), Expect = 5.4
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPN 139
L S+ +L+ LL + N
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVN 32
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin
repeats, ANK repeat, ION transport, ionic channel, R
transmembrane, transport; 2.30A {Gallus gallus} PDB:
3jxj_A
Length = 260
Score = 25.9 bits (57), Expect = 5.6
Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 2/50 (4%)
Query: 92 IKAKYEQLSFMIRSNDTQEELNQQ--LHSSVRTSNLDTSLRLLSQGADPN 139
I K + I S Q LH ++ L+ +GAD +
Sbjct: 71 IAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVH 120
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase,
cyclin dependent kinase inhibitory protein, CDK, cell
cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A
1dc2_A 2a5e_A
Length = 156
Score = 25.5 bits (57), Expect = 6.0
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPN 139
+H + R LDT + L GA +
Sbjct: 82 VHDAAREGFLDTLVVLHRAGARLD 105
Score = 25.1 bits (56), Expect = 6.7
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPN 139
L ++ ++ LL GA+PN
Sbjct: 16 LATAAARGRVEEVRALLEAGANPN 39
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6
ATPase, P-benzoyl-L-phenylalanine, PBPA, amber
suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A
2dwz_A* 1tr4_A 1uoh_A 1qym_A
Length = 231
Score = 25.6 bits (56), Expect = 6.4
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPN 139
LH + + + LL G N
Sbjct: 44 LHWACSAGHTEIVEFLLQLGVPVN 67
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat,
alternative splicing, ANK repeat, chromatin regulator,
nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP:
k.37.1.1 PDB: 3b95_A*
Length = 237
Score = 25.5 bits (57), Expect = 6.5
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPN 139
LH + + +D + LL+ D +
Sbjct: 148 LHWAAFSGCVDIAEILLAAKCDLH 171
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein,
human epidermal growth factor receptor 2, de novo
protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G
2v4h_C
Length = 136
Score = 25.0 bits (56), Expect = 6.6
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPN 139
L + R D L++ GAD N
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN 41
Score = 24.7 bits (55), Expect = 9.6
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPN 139
LH + +L+ + LL GAD N
Sbjct: 84 LHLAAFIGHLEIAEVLLKHGADVN 107
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium,
SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo
sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Length = 167
Score = 25.0 bits (56), Expect = 7.1
Identities = 3/24 (12%), Positives = 6/24 (25%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPN 139
+H + + Q N
Sbjct: 7 VHQLAAQGEMLYLATRIEQENVIN 30
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Length = 156
Score = 25.1 bits (56), Expect = 8.0
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 124 NLDTSLRLLSQGADPN 139
+ +L LL QGA PN
Sbjct: 47 STAIALELLKQGASPN 62
>1awc_B Protein (GA binding protein beta 1); complex (transcription
regulation/DNA), DNA-binding, nuclear protein, ETS
domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus
musculus} SCOP: d.211.1.1
Length = 153
Score = 25.0 bits (56), Expect = 8.2
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPN 139
LH + ++ + L+ GAD +
Sbjct: 104 LHWATEHNHQEVVELLIKYGADVH 127
Score = 25.0 bits (56), Expect = 8.7
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPN 139
LH + + + LL GAD N
Sbjct: 71 LHMAASEGHANIVEVLLKHGADVN 94
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats,
methyllyine binding, huntingti interacting protein 14,
acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo
sapiens}
Length = 240
Score = 25.1 bits (56), Expect = 8.7
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPN 139
LH + R +L ++L+ GADP+
Sbjct: 80 LHWATRQGHLSMVVQLMKYGADPS 103
Score = 25.1 bits (56), Expect = 9.3
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPN 139
LH +V N LL GA+ +
Sbjct: 181 LHWAVLAGNTTVISLLLEAGANVD 204
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1,
ankyrin repeat domain, transport protein; HET: ATP;
2.70A {Rattus norvegicus} PDB: 2nyj_A*
Length = 273
Score = 25.1 bits (55), Expect = 9.2
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 92 IKAKYEQLSFMIRSNDTQEELNQQ--LHSSVRTSNLDTSLRLLSQGADPN 139
+ K + L + ++ T Q LH ++ N+ L+ GAD
Sbjct: 79 VARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQ 128
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR
{Escherichia coli}
Length = 115
Score = 24.6 bits (55), Expect = 9.7
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPN 139
LH++ + + + +LLS+GAD N
Sbjct: 13 LHNAAKNGHAEEVKKLLSKGADVN 36
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.129 0.393
Gapped
Lambda K H
0.267 0.0902 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,011,390
Number of extensions: 95948
Number of successful extensions: 429
Number of sequences better than 10.0: 1
Number of HSP's gapped: 413
Number of HSP's successfully gapped: 145
Length of query: 143
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 59
Effective length of database: 4,356,429
Effective search space: 257029311
Effective search space used: 257029311
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (23.5 bits)