RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13622
(143 letters)
>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP
domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 122
Score = 87.4 bits (216), Expect = 9e-24
Identities = 31/102 (30%), Positives = 47/102 (46%), Gaps = 2/102 (1%)
Query: 5 AADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSL 64
A DP W N G+L C C IHR LG H S+++ L S L + + N G +
Sbjct: 23 APDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKNIGNAGFNEI 82
Query: 65 WEHSLCESKTKKKPVPSDPLHPTKAEFIKAKYEQLSFMIRSN 106
E L S+ KP P + + ++I AKY + + + +
Sbjct: 83 MECCL-PSEDPVKPNPGSDMIA-RKDYITAKYMERRYARKKH 122
>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human
(Homo sapiens) [TaxId: 9606]}
Length = 285
Score = 32.2 bits (72), Expect = 0.016
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 111 ELNQQLHSSVRTSNLDTSLRLLSQGADPNY 140
E N L +V+ ++D +LL GA+ N+
Sbjct: 4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNF 33
Score = 26.5 bits (57), Expect = 1.2
Identities = 5/24 (20%), Positives = 9/24 (37%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPN 139
L +V + L +GA +
Sbjct: 257 LLLAVELKLKKIAELLCKRGASTD 280
>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 153
Score = 29.1 bits (63), Expect = 0.14
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 111 ELNQQLHSSVRTSNLDTSLRLLSQGADPNYFYQ 143
+L ++L + R D L++ GA +
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGAPFTTDWL 33
>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 154
Score = 27.2 bits (59), Expect = 0.49
Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 107 DTQEELNQQLHSSVRTSNLDTSLRLLSQGADPN 139
DT +L+ L +V+T ++ L+ + G D
Sbjct: 2 DTAAKLHS-LCEAVKTRDIFGLLQAYADGVDLT 33
>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 301
Score = 27.3 bits (59), Expect = 0.69
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPN 139
L+ + R N+ LL GADP
Sbjct: 263 LNIAARLGNISIVDALLDYGADPF 286
Score = 26.2 bits (56), Expect = 1.9
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPNYF 141
LH +NL+ L+ G++ Y
Sbjct: 111 LHWLTSIANLELVKHLVKHGSNRLYG 136
>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId:
9606]}
Length = 408
Score = 26.9 bits (58), Expect = 0.91
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPN 139
LH + +L LL +GA PN
Sbjct: 4 LHVASFMGHLPIVKNLLQRGASPN 27
Score = 26.1 bits (56), Expect = 1.6
Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 1/58 (1%)
Query: 83 PLHPTKAEFIKAKYEQLSFMIRSNDTQEELNQQ-LHSSVRTSNLDTSLRLLSQGADPN 139
PLH + L + + +L LH + + + D LL GA PN
Sbjct: 300 PLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPN 357
Score = 25.7 bits (55), Expect = 2.8
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPN 139
LH + R + + + LL A N
Sbjct: 37 LHMAARAGHTEVAKYLLQNKAKVN 60
Score = 24.2 bits (51), Expect = 8.2
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 106 NDTQEELNQQLHSSVRTSNLDTSLRLLSQGADPN 139
N + LH +V +NLD LL +G P+
Sbjct: 159 NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPH 192
>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1,
MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 291
Score = 27.0 bits (58), Expect = 0.94
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPNY 140
++ + + + LRLL +GAD NY
Sbjct: 44 FLAACSSGDTEEVLRLLERGADINY 68
Score = 25.1 bits (53), Expect = 3.7
Identities = 5/34 (14%), Positives = 10/34 (29%)
Query: 106 NDTQEELNQQLHSSVRTSNLDTSLRLLSQGADPN 139
N + LH++ + L+ D
Sbjct: 226 NIKDYDGWTPLHAAAHWGKEEACRILVENLCDME 259
>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId:
9606]}
Length = 156
Score = 26.4 bits (56), Expect = 0.98
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPN 139
L S+ +L+ LL + N
Sbjct: 5 LASAAARGDLEQLTSLLQNNVNVN 28
>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor
I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId:
10090]}
Length = 255
Score = 25.8 bits (55), Expect = 2.3
Identities = 7/25 (28%), Positives = 9/25 (36%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPNY 140
LH +V + LL A Y
Sbjct: 13 LHLAVIHQHEPFLDFLLGFSAGHEY 37
>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans
[TaxId: 6239]}
Length = 277
Score = 25.5 bits (54), Expect = 2.7
Identities = 4/24 (16%), Positives = 11/24 (45%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPN 139
+ + + ++ + L+ QGA
Sbjct: 225 IMLAAQEGRIEVVMYLIQQGASVE 248
>d2gy9t1 a.7.6.1 (T:4-86) Ribosomal protein S20 {Escherichia coli
[TaxId: 562]}
Length = 83
Score = 23.8 bits (52), Expect = 4.3
Identities = 4/20 (20%), Positives = 8/20 (40%)
Query: 103 IRSNDTQEELNQQLHSSVRT 122
++ + N S +RT
Sbjct: 7 AIQSEKARKHNASRRSMMRT 26
>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit
10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}
Length = 223
Score = 24.9 bits (53), Expect = 4.5
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPN 139
LH + + + ++ LL GA+P+
Sbjct: 107 LHYAASKNRHEIAVMLLEGGANPD 130
>d1lzia_ c.68.1.9 (A:) Glycosyltransferase A catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 283
Score = 24.4 bits (53), Expect = 5.9
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 34 ISQVKYLEPSTWPPSLLSMLMTLTNGGAPSLWE 66
+ ++ Y +P P +L +T AP +WE
Sbjct: 4 LPRMVYPQPKVLTPCRKDVL-VVTPWLAPIVWE 35
>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 130
Score = 23.5 bits (49), Expect = 8.4
Identities = 6/28 (21%), Positives = 10/28 (35%)
Query: 116 LHSSVRTSNLDTSLRLLSQGADPNYFYQ 143
L S D R++ + DP+
Sbjct: 5 LLDSSLEGEFDLVQRIIYEVDDPSLPND 32
>d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH
alpha) N-terminal domain {Mouse (Mus musculus) [TaxId:
10090]}
Length = 76
Score = 22.7 bits (49), Expect = 9.5
Identities = 5/32 (15%), Positives = 18/32 (56%)
Query: 109 QEELNQQLHSSVRTSNLDTSLRLLSQGADPNY 140
++ELN+ + +R++ + + + + A+ +
Sbjct: 7 RDELNRAIADYLRSNGYEEAYSVFKKEAELDM 38
>d2ezla_ a.4.1.2 (A:) Ibeta subdomain of the mu end DNA-binding
domain of phage mu transposase {Bacteriophage mu
[TaxId: 10677]}
Length = 99
Score = 23.3 bits (50), Expect = 9.6
Identities = 6/34 (17%), Positives = 10/34 (29%)
Query: 18 LVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLS 51
V +L QV+ W +L+
Sbjct: 58 TVAGHYQVSASTLRDKYYQVQKFAKPDWAAALVD 91
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.129 0.393
Gapped
Lambda K H
0.267 0.0694 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 500,800
Number of extensions: 19930
Number of successful extensions: 85
Number of sequences better than 10.0: 1
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 28
Length of query: 143
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 66
Effective length of database: 1,350,386
Effective search space: 89125476
Effective search space used: 89125476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (22.3 bits)