BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13624
(187 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q14161|GIT2_HUMAN ARF GTPase-activating protein GIT2 OS=Homo sapiens GN=GIT2 PE=1
SV=2
Length = 759
Score = 92.8 bits (229), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 81/118 (68%), Gaps = 16/118 (13%)
Query: 80 MPQSEEVVRRTDQVTKRIQELAAHMRSS--DKCHSFVPHAERIRIAVSELSAIFPQNTNN 137
+P +E+V+R+T+Q+TK IQEL +R++ +K S++P +ERI +AV+E++A+FP+ +
Sbjct: 637 LPSTEDVIRKTEQITKNIQEL---LRAAQENKHDSYIPCSERIHVAVTEMAALFPKKPKS 693
Query: 138 DLIRHALRSLNTSTVRLQAECAQ-LEGS----------AERVRSCAYNMAKANKQLLT 184
D++R +LR L +S RLQ+EC + L G ++V CAY++AKA KQL+T
Sbjct: 694 DMVRTSLRLLTSSAYRLQSECKKTLPGDPGSPTDVQLVTQQVIQCAYDIAKAAKQLVT 751
>sp|Q9JLQ2|GIT2_MOUSE ARF GTPase-activating protein GIT2 OS=Mus musculus GN=Git2 PE=1
SV=2
Length = 708
Score = 91.3 bits (225), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 81/118 (68%), Gaps = 16/118 (13%)
Query: 80 MPQSEEVVRRTDQVTKRIQELAAHMRSS--DKCHSFVPHAERIRIAVSELSAIFPQNTNN 137
+P +E+V+R+T+Q+TK IQEL +R++ +K S++P +ERI +AV+E++A+FP+ +
Sbjct: 586 LPSTEDVIRKTEQITKNIQEL---LRAAQENKHDSYIPCSERIHVAVTEMAALFPKKPKS 642
Query: 138 DLIRHALRSLNTSTVRLQAECAQ-LEGSA----------ERVRSCAYNMAKANKQLLT 184
D +R +LR L +S RLQ+EC + L G + ++V CAY++AKA KQL+T
Sbjct: 643 DTVRTSLRLLTSSAYRLQSECRKALPGDSSLPTDVQLVTQQVIQCAYDIAKAAKQLVT 700
>sp|Q9Z272|GIT1_RAT ARF GTPase-activating protein GIT1 OS=Rattus norvegicus GN=Git1
PE=1 SV=1
Length = 770
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 75/118 (63%), Gaps = 16/118 (13%)
Query: 80 MPQSEEVVRRTDQVTKRIQELAAHMRSSD--KCHSFVPHAERIRIAVSELSAIFPQNTNN 137
+P +E+V+ +T+QVTK IQEL +R++ K SFVP +E+I +AV+E++++FP+
Sbjct: 648 LPSTEDVILKTEQVTKNIQEL---LRAAQEFKHDSFVPCSEKIHLAVTEMASLFPKRPAL 704
Query: 138 DLIRHALRSLNTSTVRLQAEC-----------AQLEGSAERVRSCAYNMAKANKQLLT 184
+ +R +LR LN S RLQ+EC + ++V CAY++AKA KQL+T
Sbjct: 705 EPVRSSLRLLNASAYRLQSECRKTVPPEPGAPVDFQLLTQQVIQCAYDIAKAAKQLVT 762
>sp|Q9Y2X7|GIT1_HUMAN ARF GTPase-activating protein GIT1 OS=Homo sapiens GN=GIT1 PE=1
SV=2
Length = 761
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 75/118 (63%), Gaps = 16/118 (13%)
Query: 80 MPQSEEVVRRTDQVTKRIQELAAHMRSSD--KCHSFVPHAERIRIAVSELSAIFPQNTNN 137
+P +E+V+ +T+QVTK IQEL +R++ K SFVP +E+I +AV+E++++FP+
Sbjct: 639 LPSTEDVILKTEQVTKNIQEL---LRAAQEFKHDSFVPCSEKIHLAVTEMASLFPKRPAL 695
Query: 138 DLIRHALRSLNTSTVRLQAEC-----------AQLEGSAERVRSCAYNMAKANKQLLT 184
+ +R +LR LN S RLQ+EC + ++V CAY++AKA KQL+T
Sbjct: 696 EPVRSSLRLLNASAYRLQSECRKTVPPEPGAPVDFQLLTQQVIQCAYDIAKAAKQLVT 753
>sp|Q68FF6|GIT1_MOUSE ARF GTPase-activating protein GIT1 OS=Mus musculus GN=Git1 PE=1
SV=1
Length = 770
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 75/118 (63%), Gaps = 16/118 (13%)
Query: 80 MPQSEEVVRRTDQVTKRIQELAAHMRSSD--KCHSFVPHAERIRIAVSELSAIFPQNTNN 137
+P +E+V+ +T+QVTK IQEL +R++ K SFVP +E+I +AV+E++++FP+
Sbjct: 648 LPSTEDVILKTEQVTKNIQEL---LRAAQEFKHDSFVPCSEKIHLAVTEMASLFPKRPAL 704
Query: 138 DLIRHALRSLNTSTVRLQAEC-----------AQLEGSAERVRSCAYNMAKANKQLLT 184
+ +R +LR LN S RLQ+EC + ++V CAY++AKA KQL+T
Sbjct: 705 EPVRSSLRLLNASAYRLQSECRKTVPPEPGAPVDFQLLTQQVIQCAYDIAKAAKQLVT 762
>sp|Q62968|SCNAA_RAT Sodium channel protein type 10 subunit alpha OS=Rattus norvegicus
GN=Scn10a PE=1 SV=1
Length = 1956
Score = 35.8 bits (81), Expect = 0.18, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 10/79 (12%)
Query: 37 ARNSATHHQPPETEPVSDSSWC---SPQRPASMYNVTVNAQSTTTRMPQSEEVVRRTDQV 93
AR+ A+ + P SW SPQ PA + T +++ +T P EE++R
Sbjct: 1046 ARSPASMMSSEDLAPYLGESWKRKDSPQVPAEGVDDTSSSEGSTVDCPDPEEILR----- 1100
Query: 94 TKRIQELAAHMRSSDKCHS 112
+I ELA + D C +
Sbjct: 1101 --KIPELADDLDEPDDCFT 1117
>sp|A8LY38|RIBBA_SALAI Riboflavin biosynthesis protein RibBA OS=Salinispora arenicola
(strain CNS-205) GN=ribBA PE=3 SV=1
Length = 420
Score = 35.0 bits (79), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 31/75 (41%)
Query: 35 LNARNSATHHQPPETEPVSDSSWCSPQRPASMYNVTVNAQSTTTRMPQSEEVVRRTDQVT 94
L AR +P TE D + + RPA + VN T R+P E V
Sbjct: 131 LRARQGGVLRRPGHTEAAIDLTRLAGLRPAGVLCELVNDDGTMMRVPDLERFCAEHSLVL 190
Query: 95 KRIQELAAHMRSSDK 109
I +L A+ R ++K
Sbjct: 191 ITIADLVAYRRRTEK 205
>sp|Q6AQ11|ATPG_DESPS ATP synthase gamma chain OS=Desulfotalea psychrophila (strain LSv54
/ DSM 12343) GN=atpG PE=3 SV=1
Length = 290
Score = 34.7 bits (78), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 10/65 (15%)
Query: 80 MPQSEEV------VRRTDQVTKRIQELAA-HMRSS-DKCHSFVPHAERIRIAVSELSAIF 131
MP +EV V++T Q+TK + +AA +R + DK SF P+A + A+S LS
Sbjct: 1 MPSLKEVKTKITGVKKTSQITKAMNMVAASRLRGAQDKMESFRPYASKFSEAMSNLSG-- 58
Query: 132 PQNTN 136
NTN
Sbjct: 59 GGNTN 63
>sp|Q12EL7|MURD_POLSJ UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Polaromonas sp.
(strain JS666 / ATCC BAA-500) GN=murD PE=3 SV=1
Length = 587
Score = 33.1 bits (74), Expect = 0.97, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 45 QPPETEPVSDSSWCSPQRPASMYNVTVNAQSTTTRMPQSEEVVRRT--DQVTKRIQEL 100
+PP+ P S PQRP TVN + R Q++E ++R ++V IQ L
Sbjct: 338 RPPQVRPHSTFGAGEPQRPGDYGIETVNGMAWLVRAAQADETIKRRKGEEVELHIQRL 395
>sp|Q9K6H4|ATPG_BACHD ATP synthase gamma chain OS=Bacillus halodurans (strain ATCC
BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
GN=atpG PE=3 SV=1
Length = 285
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 88 RRTDQVTKRIQELAAHM--RSSDKCHSFVPHAERIRIAVSELSA 129
++T Q+TK ++ ++A RS +K SF+P+ ++IR V+ ++A
Sbjct: 15 KKTKQITKAMEMVSAAKLNRSQEKAQSFLPYTDKIREVVASIAA 58
>sp|Q5YNU2|CAAL2_NOCFA Carboxylate-amine ligase NFA_52970 OS=Nocardia farcinica (strain
IFM 10152) GN=NFA_52970 PE=3 SV=1
Length = 380
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 48/116 (41%), Gaps = 11/116 (9%)
Query: 17 LKTQVQQVIGENETLKAALNARNSATHHQPPETEPVSDSSWCSPQRPASMYNVTVNAQST 76
L+ V+ V G +ET+ AA+ +P+ +C+ P + ++
Sbjct: 62 LRNTVEIVTGVHETVGAAVEDLRGTMDKVRRAADPLGVDVFCAGTHPFAQWST-----QQ 116
Query: 77 TTRMPQSEEVVRRTDQVTKRIQELAAHMRSSDKCHSFVPHAERIRIAVSELSAIFP 132
TR P +E++ RT +++ H+ H V H E++ ++ L FP
Sbjct: 117 LTRSPHYDELIERTQWWGRQMMIWGVHV------HVGVSHREKVFPILNSLLTTFP 166
>sp|Q9CAY1|PP223_ARATH Putative pentatricopeptide repeat-containing protein At3g11460
OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1
Length = 623
Score = 31.6 bits (70), Expect = 2.8, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 82 QSEEVVRRTDQVTKRIQELAAHM---RSSDKCHSFVPHAERIRIAVSELSAI 130
Q+EEV R D++ + ELA +M R + + H+ER+ IA L++I
Sbjct: 518 QTEEVHRMLDELETSVMELAGNMDCDRGEEVSSTTREHSERLAIAFGILNSI 569
>sp|P75384|Y399_MYCPN Uncharacterized protein MG280 homolog OS=Mycoplasma pneumoniae
(strain ATCC 29342 / M129) GN=MPN_399 PE=4 SV=1
Length = 287
Score = 31.6 bits (70), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 35/68 (51%)
Query: 54 DSSWCSPQRPASMYNVTVNAQSTTTRMPQSEEVVRRTDQVTKRIQELAAHMRSSDKCHSF 113
DSS+ S Q YN + + S + Q EEV ++ ++ TK+++E + + + +
Sbjct: 50 DSSFDSSQAFIDTYNGSSSKFSVESINKQIEEVKKKVEESTKKLEEYEKQINQAKGLNGY 109
Query: 114 VPHAERIR 121
+ E+++
Sbjct: 110 LVSPEKLK 117
>sp|Q5BHD6|RAD5_EMENI DNA repair protein rad5 OS=Emericella nidulans (strain FGSC A4 / ATCC
38163 / CBS 112.46 / NRRL 194 / M139) GN=rad5 PE=3 SV=1
Length = 1202
Score = 31.2 bits (69), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 95 KRIQELAAHMRSSDKCHSFVPHAERIRIAVSELSAIFPQNTNN-DLIRHALRSLNTSTVR 153
+RI L+ +S K H+ + H +R+ S +F Q T+ DLI L S VR
Sbjct: 986 RRINPLSPSAHTSAKIHALLAHL--VRVPAGTKSVVFSQFTSFLDLIGPQLTKAGISFVR 1043
Query: 154 LQAECAQ 160
L AQ
Sbjct: 1044 LDGTMAQ 1050
>sp|A4X639|RIBBA_SALTO Riboflavin biosynthesis protein RibBA OS=Salinispora tropica
(strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=ribBA
PE=3 SV=1
Length = 400
Score = 31.2 bits (69), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 30/75 (40%)
Query: 35 LNARNSATHHQPPETEPVSDSSWCSPQRPASMYNVTVNAQSTTTRMPQSEEVVRRTDQVT 94
L AR + TE +D + + RPA + VN T R+P E V
Sbjct: 131 LRAREGGVLRRTGHTEAATDLTRLAGLRPAGVLCELVNDDGTMMRVPDLERFCAEHSLVL 190
Query: 95 KRIQELAAHMRSSDK 109
I +L + R ++K
Sbjct: 191 VTIADLVMYRRRTEK 205
>sp|Q80X08|FAM21_RAT WASH complex subunit FAM21 OS=Rattus norvegicus GN=Fam21 PE=2 SV=1
Length = 1328
Score = 31.2 bits (69), Expect = 4.4, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 38 RNSATHHQPPETEPVSDSSWCSPQRPASMYNVTVNAQSTTTRMPQ--SEEVVRRTDQVTK 95
R S QPP +EPV + W + S N ++ A + + Q S++ + RT ++ K
Sbjct: 3 RTSPDSEQPPASEPVWERPWSVEEIRRSSQNWSLAADAGLLQFLQEFSQQTISRTHEIKK 62
Query: 96 RIQELAAHMRSS 107
++ L +++
Sbjct: 63 QVDGLIQETKAT 74
>sp|Q9R1T9|KCNH4_RAT Potassium voltage-gated channel subfamily H member 4 OS=Rattus
norvegicus GN=Kcnh4 PE=2 SV=1
Length = 1017
Score = 31.2 bits (69), Expect = 4.5, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 12/62 (19%)
Query: 7 ITHLNNEIAKLKTQVQQVIGENETLKAALNARNSATHHQPPETEPVSDSSW-----CSPQ 61
+ LN EI++L +V Q+ E + L AR H P DS+W C Q
Sbjct: 880 VCRLNQEISRLNQEVSQLSRELRQVMGLLQARLGPPSHPP-------DSTWLPDLPCPHQ 932
Query: 62 RP 63
RP
Sbjct: 933 RP 934
>sp|Q6P5H2|NEST_MOUSE Nestin OS=Mus musculus GN=Nes PE=1 SV=1
Length = 1864
Score = 30.8 bits (68), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 58/129 (44%), Gaps = 32/129 (24%)
Query: 10 LNNEIAKLKTQVQQVIGENETLKAALNARNSATHHQPPETEPVSDSSWCSPQRPASMYNV 69
L+ + A+L+ +++ + +E +A LNA+ + C+P+RP +
Sbjct: 126 LSTQAAELERELEALRASHEEERAHLNAQAA-----------------CTPRRPPA---- 164
Query: 70 TVNAQSTTTRMPQSEEVVRRTDQV----TKRIQELAAHMRSS-----DKCHSFVPHAERI 120
A ++ R P+ EE+ RR +V + QE AHM SS ++ V A
Sbjct: 165 --PAHASPIRAPEVEELARRLGEVWRGAVRDYQERVAHMESSLGQARERLGQAVRGARES 222
Query: 121 RIAVSELSA 129
R+ V +L A
Sbjct: 223 RLEVQQLQA 231
>sp|Q8TXI4|RAD50_METKA DNA double-strand break repair Rad50 ATPase OS=Methanopyrus
kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC
100938) GN=rad50 PE=3 SV=1
Length = 876
Score = 30.4 bits (67), Expect = 7.3, Method: Composition-based stats.
Identities = 22/100 (22%), Positives = 46/100 (46%), Gaps = 3/100 (3%)
Query: 5 AHITHLNNEIAKLKTQVQQVIGENETLKAALNARNSATHHQ---PPETEPVSDSSWCSPQ 61
+ + L NE A+L+ +++++ + L++ N SA E E + D + P+
Sbjct: 285 SKVRELENEEAELRRRIEELRNLLDDLRSLRNRLESAEEELEGVKRELEELKDEAGVDPE 344
Query: 62 RPASMYNVTVNAQSTTTRMPQSEEVVRRTDQVTKRIQELA 101
R + V A + + EE+ R+ ++V+ + EL
Sbjct: 345 RLVEFKDKIVEASERLRDLRREEELKRKLEKVSDELSELG 384
>sp|Q61001|LAMA5_MOUSE Laminin subunit alpha-5 OS=Mus musculus GN=Lama5 PE=1 SV=4
Length = 3718
Score = 30.0 bits (66), Expect = 8.4, Method: Composition-based stats.
Identities = 30/135 (22%), Positives = 55/135 (40%), Gaps = 6/135 (4%)
Query: 5 AHITHLNNEIAKLKTQVQQVIGENETLKAALNARNSATHHQPPETEPVSDSSWCSPQRPA 64
A + LN IA L+++++ G L + +TE + + +
Sbjct: 2205 ARLHRLNASIADLQSKLRSPPGPRYQAAQQLQTLEQQSISLQQDTERLGSQATGVQGQAG 2264
Query: 65 SMYNVTVNAQSTTTRMPQSEEVVRRTDQVTKRIQELAAHMRSSDKCHSFVPHAERIRIAV 124
+ + T +ST R + E VR V + + ELA+ M + VP E++R A+
Sbjct: 2265 QLLDTT---ESTLGRAQKLLESVR---AVGRALNELASRMGQGSPGDALVPSGEQLRWAL 2318
Query: 125 SELSAIFPQNTNNDL 139
+E+ + DL
Sbjct: 2319 AEVERLLWDMRTRDL 2333
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.121 0.338
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,862,237
Number of Sequences: 539616
Number of extensions: 1994484
Number of successful extensions: 8948
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 8913
Number of HSP's gapped (non-prelim): 85
length of query: 187
length of database: 191,569,459
effective HSP length: 111
effective length of query: 76
effective length of database: 131,672,083
effective search space: 10007078308
effective search space used: 10007078308
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)