Query psy13624
Match_columns 187
No_of_seqs 47 out of 49
Neff 4.2
Searched_HMMs 46136
Date Fri Aug 16 16:02:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13624.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13624hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12205 GIT1_C: G protein-cou 100.0 1.1E-46 2.4E-51 297.2 9.8 110 77-187 5-123 (123)
2 KOG0818|consensus 100.0 1.2E-33 2.6E-38 264.0 17.3 178 9-187 434-669 (669)
3 PF04728 LPP: Lipoprotein leuc 93.9 0.16 3.4E-06 35.8 4.9 34 3-36 1-34 (56)
4 PF03623 Focal_AT: Focal adhes 92.6 2.2 4.7E-05 35.0 10.4 102 82-185 7-124 (139)
5 smart00307 ILWEQ I/LWEQ domain 92.2 1.7 3.6E-05 37.4 9.7 106 80-185 4-139 (200)
6 smart00338 BRLZ basic region l 90.2 0.72 1.6E-05 31.9 4.6 32 4-35 32-63 (65)
7 PF06005 DUF904: Protein of un 89.8 0.87 1.9E-05 33.2 5.0 29 4-32 10-38 (72)
8 PF01166 TSC22: TSC-22/dip/bun 89.1 0.7 1.5E-05 33.0 3.9 29 7-35 16-44 (59)
9 PRK15422 septal ring assembly 89.0 0.83 1.8E-05 34.3 4.5 34 4-37 10-43 (79)
10 PF04977 DivIC: Septum formati 88.1 1.2 2.7E-05 30.9 4.7 33 6-38 18-50 (80)
11 PF12026 DUF3513: Domain of un 86.6 6.8 0.00015 34.0 9.3 102 83-184 93-207 (210)
12 PRK00295 hypothetical protein; 84.5 4.8 0.0001 28.8 6.2 36 4-39 18-53 (68)
13 COG3074 Uncharacterized protei 83.8 2.5 5.4E-05 31.5 4.5 32 4-35 10-41 (79)
14 PF05812 Herpes_BLRF2: Herpesv 83.2 2.1 4.6E-05 34.3 4.3 27 13-39 4-30 (118)
15 PRK00736 hypothetical protein; 82.4 6.9 0.00015 28.0 6.4 35 4-38 18-52 (68)
16 TIGR02209 ftsL_broad cell divi 81.7 3.3 7.1E-05 29.5 4.5 33 6-38 25-57 (85)
17 PRK04406 hypothetical protein; 81.2 7.6 0.00016 28.4 6.3 36 4-39 24-59 (75)
18 PF06156 DUF972: Protein of un 80.9 3 6.4E-05 32.5 4.3 29 4-32 14-42 (107)
19 PHA03162 hypothetical protein; 80.6 3.1 6.7E-05 34.1 4.4 24 14-37 15-38 (135)
20 PRK02793 phi X174 lysis protei 80.3 8.6 0.00019 27.8 6.3 36 4-39 21-56 (72)
21 PF05377 FlaC_arch: Flagella a 79.9 3.6 7.8E-05 28.9 4.0 30 6-35 1-30 (55)
22 PHA03155 hypothetical protein; 79.2 3.3 7.2E-05 33.1 4.1 24 14-37 10-33 (115)
23 PRK02119 hypothetical protein; 78.8 10 0.00022 27.5 6.3 36 4-39 22-57 (73)
24 PF07106 TBPIP: Tat binding pr 78.1 18 0.00039 29.1 8.2 66 3-107 70-135 (169)
25 PRK00846 hypothetical protein; 78.0 9.9 0.00021 28.2 6.1 36 4-39 26-61 (77)
26 PRK00888 ftsB cell division pr 75.2 6.1 0.00013 30.3 4.6 34 6-39 28-61 (105)
27 PF08913 VBS: Vinculin Binding 73.7 44 0.00096 26.7 10.4 101 84-186 7-120 (125)
28 PF04102 SlyX: SlyX; InterPro 72.1 9 0.0002 27.2 4.5 36 4-39 17-52 (69)
29 PF06305 DUF1049: Protein of u 72.0 4.4 9.5E-05 27.7 2.8 24 9-32 45-68 (68)
30 PRK10884 SH3 domain-containing 72.0 7.9 0.00017 33.2 4.9 34 4-37 131-164 (206)
31 PF07716 bZIP_2: Basic region 70.7 12 0.00025 25.1 4.6 24 9-32 29-52 (54)
32 PRK13169 DNA replication intia 70.4 8.3 0.00018 30.3 4.3 29 4-32 14-42 (110)
33 PF10226 DUF2216: Uncharacteri 70.1 7.4 0.00016 33.6 4.3 29 5-33 48-76 (195)
34 PRK09973 putative outer membra 69.6 11 0.00024 28.6 4.7 36 2-37 21-56 (85)
35 PF01486 K-box: K-box region; 68.2 12 0.00026 27.9 4.6 31 5-35 68-98 (100)
36 PRK04325 hypothetical protein; 67.1 27 0.00059 25.3 6.2 35 4-38 22-56 (74)
37 PRK15396 murein lipoprotein; P 67.1 14 0.0003 27.5 4.7 36 2-37 22-57 (78)
38 PF00170 bZIP_1: bZIP transcri 66.5 17 0.00038 24.8 4.9 26 7-32 35-60 (64)
39 PF02845 CUE: CUE domain; Int 65.8 9.9 0.00021 24.1 3.3 28 122-150 3-30 (42)
40 PRK09413 IS2 repressor TnpA; R 65.5 11 0.00024 28.9 4.1 29 6-34 72-100 (121)
41 PF07716 bZIP_2: Basic region 65.5 11 0.00025 25.2 3.7 28 9-36 22-49 (54)
42 PF06005 DUF904: Protein of un 65.3 17 0.00036 26.5 4.7 27 6-32 19-45 (72)
43 COG4238 Murein lipoprotein [Ce 64.2 17 0.00037 27.3 4.6 36 2-37 22-57 (78)
44 PRK13729 conjugal transfer pil 64.2 18 0.00039 35.0 6.0 26 12-37 97-122 (475)
45 smart00338 BRLZ basic region l 63.8 20 0.00043 24.6 4.8 27 8-34 29-55 (65)
46 PF08826 DMPK_coil: DMPK coile 63.5 12 0.00025 26.7 3.5 28 5-32 32-59 (61)
47 KOG4196|consensus 61.9 17 0.00037 29.8 4.7 29 9-37 78-106 (135)
48 PRK13922 rod shape-determining 61.6 16 0.00034 31.6 4.8 31 8-38 79-112 (276)
49 PF13324 GCIP: Grap2 and cycli 61.3 58 0.0013 28.3 8.3 70 117-186 8-84 (275)
50 PF04999 FtsL: Cell division p 60.9 18 0.00039 26.5 4.4 32 7-38 37-68 (97)
51 PF08172 CASP_C: CASP C termin 60.6 15 0.00033 32.3 4.5 27 6-32 94-120 (248)
52 TIGR02894 DNA_bind_RsfA transc 58.4 18 0.00038 30.5 4.3 28 9-36 108-135 (161)
53 PF12709 Kinetocho_Slk19: Cent 58.2 26 0.00057 26.7 4.9 28 10-37 47-74 (87)
54 PF15619 Lebercilin: Ciliary p 57.9 18 0.0004 30.6 4.4 29 5-33 12-40 (194)
55 PF08172 CASP_C: CASP C termin 56.0 17 0.00037 32.0 4.1 29 4-32 99-127 (248)
56 TIGR02449 conserved hypothetic 55.4 34 0.00075 24.7 4.9 28 9-36 18-45 (65)
57 PF05377 FlaC_arch: Flagella a 55.3 33 0.00071 24.1 4.6 30 4-33 6-35 (55)
58 COG3883 Uncharacterized protei 55.2 7.6 0.00016 34.9 1.8 34 61-94 105-140 (265)
59 PF04977 DivIC: Septum formati 54.5 25 0.00055 24.1 4.0 29 4-32 23-51 (80)
60 PF10883 DUF2681: Protein of u 54.4 17 0.00037 27.6 3.3 20 14-33 25-44 (87)
61 PF07106 TBPIP: Tat binding pr 52.2 21 0.00045 28.8 3.8 32 4-35 78-109 (169)
62 KOG4797|consensus 50.3 22 0.00047 28.6 3.4 27 7-33 69-95 (123)
63 cd07429 Cby_like Chibby, a nuc 50.2 19 0.00042 28.3 3.1 22 12-33 72-93 (108)
64 PF06156 DUF972: Protein of un 50.1 37 0.00079 26.4 4.6 34 5-38 22-55 (107)
65 PRK15422 septal ring assembly 48.4 41 0.00088 25.3 4.4 27 9-35 29-62 (79)
66 PF12443 AKNA: AT-hook-contain 48.1 23 0.0005 27.9 3.3 23 5-27 52-74 (106)
67 PF02183 HALZ: Homeobox associ 48.0 38 0.00083 22.5 3.9 27 9-35 9-35 (45)
68 PRK13169 DNA replication intia 46.5 45 0.00098 26.2 4.7 34 5-38 22-55 (110)
69 PF07558 Shugoshin_N: Shugoshi 46.3 19 0.00042 23.9 2.3 27 9-35 18-44 (46)
70 PF01608 I_LWEQ: I/LWEQ domain 45.1 1.1E+02 0.0024 25.3 7.0 79 83-184 9-91 (152)
71 KOG3335|consensus 45.1 93 0.002 26.7 6.7 27 9-35 110-136 (181)
72 PRK10803 tol-pal system protei 44.8 33 0.00072 30.0 4.1 27 6-32 62-88 (263)
73 COG2433 Uncharacterized conser 44.7 38 0.00082 34.1 4.8 34 4-37 428-461 (652)
74 PF10458 Val_tRNA-synt_C: Valy 44.4 42 0.00092 23.3 3.9 29 9-37 1-29 (66)
75 smart00546 CUE Domain that may 43.9 40 0.00086 21.3 3.4 26 122-148 4-29 (43)
76 PF14916 CCDC92: Coiled-coil d 43.7 32 0.0007 24.5 3.1 29 9-37 18-46 (60)
77 PF07334 IFP_35_N: Interferon- 42.5 49 0.0011 24.6 4.1 31 7-37 2-32 (76)
78 PF11336 DUF3138: Protein of u 42.0 36 0.00079 33.1 4.2 32 10-41 23-54 (514)
79 PF08826 DMPK_coil: DMPK coile 41.8 63 0.0014 22.9 4.4 24 3-26 37-60 (61)
80 smart00307 ILWEQ I/LWEQ domain 40.7 1.5E+02 0.0032 25.6 7.4 50 136-185 55-107 (200)
81 TIGR02449 conserved hypothetic 40.4 67 0.0015 23.1 4.4 31 7-37 2-32 (65)
82 PF11932 DUF3450: Protein of u 39.0 63 0.0014 27.7 4.9 29 9-37 53-81 (251)
83 TIGR00219 mreC rod shape-deter 38.3 57 0.0012 29.0 4.6 17 23-39 95-111 (283)
84 PF03980 Nnf1: Nnf1 ; InterPr 38.3 55 0.0012 24.5 3.9 28 9-36 77-104 (109)
85 COG1792 MreC Cell shape-determ 38.3 55 0.0012 29.1 4.5 30 10-39 81-110 (284)
86 TIGR02209 ftsL_broad cell divi 38.0 57 0.0012 23.0 3.8 29 5-33 31-59 (85)
87 PRK03947 prefoldin subunit alp 38.0 80 0.0017 24.5 5.0 34 2-35 3-36 (140)
88 smart00340 HALZ homeobox assoc 38.0 41 0.00088 22.8 2.8 17 9-25 16-32 (44)
89 COG2900 SlyX Uncharacterized p 37.9 1.6E+02 0.0036 21.8 6.2 32 4-35 21-52 (72)
90 TIGR03752 conj_TIGR03752 integ 37.5 54 0.0012 31.9 4.6 25 8-32 69-93 (472)
91 PF10224 DUF2205: Predicted co 37.1 82 0.0018 23.5 4.6 29 9-37 34-62 (80)
92 COG3074 Uncharacterized protei 36.9 65 0.0014 24.1 3.9 20 15-34 42-61 (79)
93 PRK10884 SH3 domain-containing 36.4 69 0.0015 27.5 4.7 29 9-37 122-150 (206)
94 smart00283 MA Methyl-accepting 35.1 1.9E+02 0.0042 23.2 6.9 20 165-184 237-256 (262)
95 PF14775 NYD-SP28_assoc: Sperm 34.0 68 0.0015 22.4 3.6 26 11-36 32-57 (60)
96 PF13600 DUF4140: N-terminal d 33.4 96 0.0021 22.8 4.5 32 4-35 69-100 (104)
97 COG3879 Uncharacterized protei 33.4 75 0.0016 28.4 4.5 29 8-36 53-81 (247)
98 KOG0980|consensus 33.0 3E+02 0.0064 29.2 9.1 43 142-184 798-854 (980)
99 COG2036 HHT1 Histones H3 and H 32.9 1.4E+02 0.003 22.8 5.4 57 118-180 7-68 (91)
100 PRK00888 ftsB cell division pr 32.8 83 0.0018 24.1 4.2 29 5-33 34-62 (105)
101 PF11853 DUF3373: Protein of u 32.5 38 0.00083 33.0 2.7 21 13-33 32-52 (489)
102 COG5509 Uncharacterized small 32.2 64 0.0014 23.4 3.2 23 7-29 27-49 (65)
103 PF08946 Osmo_CC: Osmosensory 31.6 79 0.0017 21.6 3.4 23 4-26 18-40 (46)
104 PF00015 MCPsignal: Methyl-acc 31.6 1.7E+02 0.0036 23.2 5.9 20 87-106 88-107 (213)
105 PF07499 RuvA_C: RuvA, C-termi 31.0 30 0.00066 22.6 1.3 29 119-148 19-47 (47)
106 PF10157 DUF2365: Uncharacteri 31.0 2.9E+02 0.0063 22.7 7.3 90 83-186 54-145 (149)
107 PF02183 HALZ: Homeobox associ 30.8 1.1E+02 0.0023 20.3 3.9 28 8-35 15-42 (45)
108 KOG4514|consensus 30.1 3.8E+02 0.0083 23.5 8.6 95 78-186 117-218 (222)
109 PF12097 DUF3573: Protein of u 29.8 63 0.0014 30.5 3.6 26 9-34 39-64 (383)
110 PF01166 TSC22: TSC-22/dip/bun 29.4 50 0.0011 23.6 2.2 27 11-37 13-39 (59)
111 PF14197 Cep57_CLD_2: Centroso 29.0 1.1E+02 0.0023 22.1 3.9 23 8-30 43-65 (69)
112 PF03285 Paralemmin: Paralemmi 28.8 56 0.0012 29.6 3.0 27 4-30 9-35 (278)
113 PF13890 Rab3-GTPase_cat: Rab3 28.7 72 0.0016 26.8 3.4 32 65-96 21-54 (164)
114 PHA00728 hypothetical protein 28.5 49 0.0011 27.2 2.3 18 19-36 5-22 (151)
115 PF04728 LPP: Lipoprotein leuc 28.3 1.7E+02 0.0036 20.7 4.7 28 5-32 10-37 (56)
116 PF09006 Surfac_D-trimer: Lung 28.2 1.3E+02 0.0029 20.5 4.0 27 7-33 1-27 (46)
117 PF14645 Chibby: Chibby family 28.2 68 0.0015 25.2 3.1 22 11-32 70-91 (116)
118 PF07407 Seadorna_VP6: Seadorn 28.1 68 0.0015 30.4 3.5 21 128-148 133-153 (420)
119 KOG4343|consensus 27.8 82 0.0018 31.6 4.1 29 9-37 306-334 (655)
120 PF11853 DUF3373: Protein of u 27.7 57 0.0012 31.8 3.0 23 12-35 25-47 (489)
121 COG1729 Uncharacterized protei 27.4 81 0.0018 28.3 3.7 26 6-32 57-82 (262)
122 PF09789 DUF2353: Uncharacteri 27.2 3.2E+02 0.0069 25.3 7.6 69 9-106 83-151 (319)
123 KOG1937|consensus 27.1 6.2E+02 0.014 25.0 10.3 113 5-161 345-464 (521)
124 PF05308 Mito_fiss_reg: Mitoch 27.1 67 0.0015 28.5 3.2 20 6-25 123-142 (253)
125 PF15070 GOLGA2L5: Putative go 27.1 4.1E+02 0.0089 26.6 8.8 26 94-119 575-605 (617)
126 PF12205 GIT1_C: G protein-cou 27.0 2.9E+02 0.0062 22.1 6.4 22 165-186 37-58 (123)
127 PF15058 Speriolin_N: Sperioli 26.8 2.6E+02 0.0055 24.5 6.5 63 6-69 13-87 (200)
128 COG4694 Uncharacterized protei 26.8 92 0.002 31.6 4.3 34 2-35 449-482 (758)
129 PF08702 Fib_alpha: Fibrinogen 26.8 1.5E+02 0.0034 23.9 5.0 34 4-37 96-129 (146)
130 cd00890 Prefoldin Prefoldin is 26.8 1.2E+02 0.0025 22.7 4.1 27 6-32 7-33 (129)
131 PF12329 TMF_DNA_bd: TATA elem 25.6 1.7E+02 0.0037 21.0 4.6 24 9-32 44-67 (74)
132 PF01763 Herpes_UL6: Herpesvir 25.4 4.6E+02 0.01 26.1 8.7 18 79-103 458-475 (557)
133 KOG2264|consensus 25.2 1.1E+02 0.0024 31.2 4.5 30 3-32 98-134 (907)
134 KOG2483|consensus 25.1 1.2E+02 0.0026 26.8 4.3 32 6-37 106-137 (232)
135 PF10883 DUF2681: Protein of u 24.9 1.6E+02 0.0035 22.3 4.5 27 7-33 25-51 (87)
136 COG4467 Regulator of replicati 24.7 1.4E+02 0.003 23.9 4.2 28 5-32 15-42 (114)
137 PF11559 ADIP: Afadin- and alp 24.6 1.7E+02 0.0036 23.0 4.7 24 9-32 56-79 (151)
138 cd07909 YciF YciF bacterial st 24.6 1.3E+02 0.0029 24.4 4.3 68 91-158 16-85 (147)
139 PF04458 DUF505: Protein of un 24.6 1.7E+02 0.0037 29.4 5.6 57 111-182 514-574 (591)
140 PF10805 DUF2730: Protein of u 24.5 1.5E+02 0.0032 22.6 4.2 27 6-32 50-78 (106)
141 PRK04330 hypothetical protein; 24.3 2.6E+02 0.0057 21.4 5.5 31 111-143 24-54 (88)
142 PF10198 Ada3: Histone acetylt 24.0 1.3E+02 0.0029 24.0 4.1 29 9-37 37-65 (131)
143 PRK14127 cell division protein 23.9 1.7E+02 0.0036 23.0 4.5 25 10-34 42-66 (109)
144 cd00632 Prefoldin_beta Prefold 23.4 2E+02 0.0042 21.5 4.7 31 5-35 70-100 (105)
145 PRK01203 prefoldin subunit alp 23.1 1.4E+02 0.0031 24.1 4.1 19 88-106 87-105 (130)
146 KOG0971|consensus 22.9 5.7E+02 0.012 27.7 9.1 29 9-37 1023-1051(1243)
147 PRK14127 cell division protein 22.7 1.7E+02 0.0038 22.9 4.4 30 8-37 33-62 (109)
148 TIGR03752 conj_TIGR03752 integ 22.5 1.4E+02 0.003 29.2 4.5 20 5-24 73-92 (472)
149 PRK13922 rod shape-determining 22.5 1.4E+02 0.0029 25.8 4.2 25 8-32 72-96 (276)
150 PF08581 Tup_N: Tup N-terminal 22.4 2.4E+02 0.0051 20.9 4.8 31 4-34 31-61 (79)
151 PF00015 MCPsignal: Methyl-acc 22.4 3.9E+02 0.0085 21.0 9.7 26 138-163 145-170 (213)
152 PF02996 Prefoldin: Prefoldin 22.3 1.9E+02 0.0042 21.4 4.5 31 5-35 84-114 (120)
153 COG3883 Uncharacterized protei 22.1 1.6E+02 0.0035 26.6 4.6 14 84-97 94-107 (265)
154 PF14282 FlxA: FlxA-like prote 22.1 1.6E+02 0.0034 22.5 4.0 27 6-32 52-78 (106)
155 PF14818 DUF4482: Domain of un 22.0 1.2E+02 0.0025 25.1 3.4 25 8-32 30-54 (141)
156 PF04102 SlyX: SlyX; InterPro 22.0 2.7E+02 0.0058 19.6 4.9 34 4-37 10-43 (69)
157 PF08614 ATG16: Autophagy prot 21.7 2.1E+02 0.0046 23.6 5.0 24 9-32 134-157 (194)
158 KOG4603|consensus 21.6 1.9E+02 0.0041 25.1 4.7 35 1-35 75-109 (201)
159 PF12709 Kinetocho_Slk19: Cent 21.4 1.6E+02 0.0035 22.5 3.8 25 4-28 48-72 (87)
160 PRK13923 putative spore coat p 21.3 1.5E+02 0.0032 25.2 4.0 28 10-37 109-136 (170)
161 PF07989 Microtub_assoc: Micro 21.2 1.9E+02 0.004 21.1 4.0 30 6-35 37-66 (75)
162 PRK10803 tol-pal system protei 20.9 1.5E+02 0.0032 26.0 4.1 29 9-37 58-86 (263)
163 PRK10722 hypothetical protein; 20.6 2.9E+02 0.0063 24.8 5.9 38 2-39 173-213 (247)
164 PRK00295 hypothetical protein; 20.5 2.8E+02 0.0061 19.6 4.8 32 6-37 13-44 (68)
165 PF12325 TMF_TATA_bd: TATA ele 20.4 2.2E+02 0.0048 22.5 4.6 26 7-32 18-43 (120)
166 PF06103 DUF948: Bacterial pro 20.4 1E+02 0.0022 22.2 2.5 46 83-128 42-88 (90)
167 PRK14160 heat shock protein Gr 20.4 1.9E+02 0.0041 25.2 4.5 32 4-35 53-84 (211)
No 1
>PF12205 GIT1_C: G protein-coupled receptor kinase-interacting protein 1 C term; InterPro: IPR022018 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF01412 from PFAM, PF00023 from PFAM, PF08518 from PFAM. GIT1 plays an important role in cell adhesion, motility, cytoskeletal remodeling and membrane trafficking. To perform this function, it localises p21-activated kinase (PAK) and PAK-interactive exchange factor to focal adhesions. Its activation is regulated by interaction between its paxillin-binding C-terminal and the LD motifs of paxillin. The C-terminal folds into a four helix bundle. ; PDB: 2JX0_A.
Probab=100.00 E-value=1.1e-46 Score=297.17 Aligned_cols=110 Identities=47% Similarity=0.768 Sum_probs=98.5
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHHHHhccCCCCCCccchHHHHHHHHHHHHhhcCCCCCchHHHHHHHHhhhhhHHHHH
Q psy13624 77 TTRMPQSEEVVRRTDQVTKRIQELAAHMRSSDKCHSFVPHAERIRIAVSELSAIFPQNTNNDLIRHALRSLNTSTVRLQA 156 (187)
Q Consensus 77 ~~~~P~~e~Vir~TE~vT~~IqeLl~aaq~~~~~~~fvpcae~I~~AV~el~alFP~~~~~e~vr~~L~~L~~~a~~Lq~ 156 (187)
++++||+||||||||+|||||||||+|||++++ ++|+||||+|++||++|++|||++|.+++||++|++|++++++||+
T Consensus 5 ~~~~p~~e~Vi~~TE~vTk~IqeLl~aAQ~~~~-~s~~pcae~I~~aV~~m~~LfP~~~~~e~vr~~L~~L~~~~~~Lq~ 83 (123)
T PF12205_consen 5 DPNLPSTEDVIRRTEQVTKRIQELLRAAQEGRH-DSFAPCAERIRSAVTEMAALFPKDPRSETVRSSLRQLTSSAYRLQA 83 (123)
T ss_dssp BSS-S-HHHHHHHHHHHHHHHHHHHHHHHTT-H-HHHHHHHHHHHHHHHHHHHTS-SSB--HHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc-ccchhHHHHHHHHHHHHHHhCCCccCChHHHHHHHHHHHHHHHHHH
Confidence 467999999999999999999999999999876 8999999999999999999999999999999999999999999999
Q ss_pred Hhhhh---------HHhHHHHHHHHHHHHHHHHHhhhhcC
Q psy13624 157 ECAQL---------EGSAERVRSCAYNMAKANKQLLTQFQ 187 (187)
Q Consensus 157 eC~~~---------q~~t~qv~~cAYdIAKAaK~LvT~f~ 187 (187)
||+.+ +.+++|||+||||||||||+|||+|+
T Consensus 84 eC~~~~~~~~~~~~~~~t~qvi~~AYdIAKAaKqLvT~~~ 123 (123)
T PF12205_consen 84 ECQKAQPEDDAVDIQLVTQQVIQCAYDIAKAAKQLVTIFT 123 (123)
T ss_dssp HHHS---S--SS-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99876 45599999999999999999999995
No 2
>KOG0818|consensus
Probab=100.00 E-value=1.2e-33 Score=264.02 Aligned_cols=178 Identities=31% Similarity=0.425 Sum_probs=145.1
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHhhc--------CCC----CCCCCCCC-------CCCCC------------CCC
Q psy13624 9 HLNNEIAKLKTQVQQVIGENETLKAALNAR--------NSA----THHQPPET-------EPVSD------------SSW 57 (187)
Q Consensus 9 ~l~~ei~~Lq~~i~~L~~EN~~Lk~~~~~~--------~~~----~~~~~~~~-------~p~~~------------~~~ 57 (187)
.|..|+++|.+.++.|+.+|.+|++.+... +.+ ...+.... +|++. ...
T Consensus 434 t~~~q~~el~~~v~~l~~~n~~l~s~~~~~r~nl~~~kp~~~~~~~psP~~~~e~~~~~l~p~g~t~~~e~~~s~d~~~~ 513 (669)
T KOG0818|consen 434 TLTKQVQELTEVVHALQASNAKLQSLMKVNRENLYNLKPTNPTRRMPSPLEIVETLERRLPPVGSTQEFERDDSEDRMDP 513 (669)
T ss_pred hhHHHHHHHHHHHHHHHhhhHHHHHHHhhccccccccccCCcccCCCCchhhcccccccCCCCCCCCCcCcCccccccCc
Confidence 678889999999999999999999866542 222 11111111 22211 111
Q ss_pred CCCCCCcccccccCCC---------CCC-------CCCCCChhhHHHHHHHHHHHHHHHHHHhccCCCCCCccchHHHHH
Q psy13624 58 CSPQRPASMYNVTVNA---------QST-------TTRMPQSEEVVRRTDQVTKRIQELAAHMRSSDKCHSFVPHAERIR 121 (187)
Q Consensus 58 ~~~~Rp~SMye~~~~~---------~~t-------~~~~P~~e~Vir~TE~vT~~IqeLl~aaq~~~~~~~fvpcae~I~ 121 (187)
.|-+|+.+||+.|-.. |.| +|++|+.|||+.+||+||++||||+++||+.++ ++|+||+|+|+
T Consensus 514 ~g~~~~~~~~~rr~vN~~kgd~~v~~~tssl~~~~~~~~p~~eev~i~te~vt~~~~el~ra~qe~~~-~s~~p~~eli~ 592 (669)
T KOG0818|consen 514 GGLGRRANGSDRRNVNDHKGDKLVEPSTSSLSRSSQPGLPSTEEVIIKTEQVTKNIQELLRAAQEQKH-DSTRPCSELIH 592 (669)
T ss_pred ccccCcccchhhhccccccCCcccCcCccccccCCCCCCCccchheecHHHHhHHHHHHHHHHHhhhc-cccccHHHHHH
Confidence 1237888888876442 333 578999999999999999999999999999777 99999999999
Q ss_pred HHHHHHHhhcCCCCCchHHHHHHHHhhhhhHHHHHHh-hhh----------HHhHHHHHHHHHHHHHHHHHhhhhcC
Q psy13624 122 IAVSELSAIFPQNTNNDLIRHALRSLNTSTVRLQAEC-AQL----------EGSAERVRSCAYNMAKANKQLLTQFQ 187 (187)
Q Consensus 122 ~AV~el~alFP~~~~~e~vr~~L~~L~~~a~~Lq~eC-~~~----------q~~t~qv~~cAYdIAKAaK~LvT~f~ 187 (187)
.||++|++|||+.|.++.+|++|++|+.++++||+|| +++ |+.++|||+||||||||+|+|||+|+
T Consensus 593 ~avt~~~al~ak~pa~d~~r~sl~Llt~~~~~lqhEc~kav~~d~~~~~~~ql~t~~VidcA~~IA~a~k~lV~~f~ 669 (669)
T KOG0818|consen 593 HAVTEMAALFAKGPASDPVRASLRLLTISAYRLQHECIKAVPLDPGKPNDPQLMTQQVIDCAYDIAKAAKQLVTIFT 669 (669)
T ss_pred HHhhhHHHhccCCCccchHHHHHHHHHHHhHHHHHHHHhhcCCCCCCCCchhhhhHHHHHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999999 433 77899999999999999999999996
No 3
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=93.86 E-value=0.16 Score=35.82 Aligned_cols=34 Identities=26% Similarity=0.504 Sum_probs=31.1
Q ss_pred hhHHHHhHHHHHHHHHHHHHHHHhhhHHHHHHHh
Q psy13624 3 SEAHITHLNNEIAKLKTQVQQVIGENETLKAALN 36 (187)
Q Consensus 3 Sea~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~~ 36 (187)
|.+||.+|+.++..|..+|.+|..+...|+..+.
T Consensus 1 s~akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~ 34 (56)
T PF04728_consen 1 SNAKIDQLSSDVQTLNSKVDQLSSDVNALRADVQ 34 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999996554
No 4
>PF03623 Focal_AT: Focal adhesion targeting region; InterPro: IPR005189 Focal adhesion kinase (FAK) is a tyrosine kinase found in focal adhesions, intracellular signalling complexes that are formed following engagement of the extracellular matrix by integrins. The C-terminal "focal adhesion targeting" (FAT) region is necessary and sufficient for localizing FAK to focal adhesions. The crystal structure of FAT shows it forms a four-helix bundle that resembles those found in two other proteins involved in cell adhesion, alpha-catenin and vinculin []. The binding of FAT to the focal adhesion protein, paxillin, requires the integrity of the helical bundle, whereas binding to another focal adhesion protein, talin, does not.; GO: 0004713 protein tyrosine kinase activity, 0004871 signal transducer activity, 0006468 protein phosphorylation, 0007172 signal complex assembly, 0005925 focal adhesion; PDB: 1K05_C 1OW8_C 1OW7_C 3S9O_C 3B71_B 1K04_A 1OW6_C 3GM1_B 3GM3_A 3GM2_A ....
Probab=92.58 E-value=2.2 Score=34.98 Aligned_cols=102 Identities=18% Similarity=0.247 Sum_probs=75.0
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHhccCCCCCCccchHHHHHHH-------HHHHHhhcCCCCCchHHHHHHHHhhhhhHHH
Q psy13624 82 QSEEVVRRTDQVTKRIQELAAHMRSSDKCHSFVPHAERIRIA-------VSELSAIFPQNTNNDLIRHALRSLNTSTVRL 154 (187)
Q Consensus 82 ~~e~Vir~TE~vT~~IqeLl~aaq~~~~~~~fvpcae~I~~A-------V~el~alFP~~~~~e~vr~~L~~L~~~a~~L 154 (187)
..|.|.+.|-.|-|.+-.|=...+..+ .+.|+.|-..|..+ |.++...||... -.+|.-+=+.|+..-..|
T Consensus 7 ~~D~Vy~at~~VVkaV~~Ls~~v~~~~-~~~y~~~VK~VG~~Lr~Ll~sVd~~~~~l~~s~-~~EVema~klL~~DM~eL 84 (139)
T PF03623_consen 7 TNDKVYDATTGVVKAVMQLSNSVQTAK-PEEYVDLVKNVGLALRDLLTSVDQILPSLPSSV-RREVEMAHKLLSKDMAEL 84 (139)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHTTTSS-HHHHHHHHHHHHHHHHHHHHHHHHHGGGSHTTS-HHHHHHHHHHHHHHHHHH
T ss_pred ccChHHHHHHHHHHHHHHHHhhhccCC-hHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHH-HHHHHHHHHHHHHHHHHH
Confidence 368999999999999999999999865 58999999888865 455567787655 556666656665554444
Q ss_pred HHHhhhhH---------HhHHHHHHHHHHHHHHHHHhhhh
Q psy13624 155 QAECAQLE---------GSAERVRSCAYNMAKANKQLLTQ 185 (187)
Q Consensus 155 q~eC~~~q---------~~t~qv~~cAYdIAKAaK~LvT~ 185 (187)
...=+.+| ..-.++..+||-+|.-+|.|+.-
T Consensus 85 i~~mklaq~~~~ttl~~eyrr~ml~aah~LA~daKnLlD~ 124 (139)
T PF03623_consen 85 ISAMKLAQQNSNTTLDEEYRRQMLSAAHVLAMDAKNLLDV 124 (139)
T ss_dssp HHHHHHHHHTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 33332221 12568889999999999999864
No 5
>smart00307 ILWEQ I/LWEQ domain. Thought to possess an F-actin binding function.
Probab=92.19 E-value=1.7 Score=37.45 Aligned_cols=106 Identities=15% Similarity=0.227 Sum_probs=78.9
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHhcc--------CC---C-----------CCCccchHHHHHHHHHHHHhhcCC----
Q psy13624 80 MPQSEEVVRRTDQVTKRIQELAAHMRS--------SD---K-----------CHSFVPHAERIRIAVSELSAIFPQ---- 133 (187)
Q Consensus 80 ~P~~e~Vir~TE~vT~~IqeLl~aaq~--------~~---~-----------~~~fvpcae~I~~AV~el~alFP~---- 133 (187)
+..-|-+......||.+|..|+.++-. |+ . .+..+.+|..|..|++-|..-...
T Consensus 4 l~v~e~IL~aa~~i~~a~~~Lv~aA~~~Q~Eiv~~gr~~~~~~~fY~kn~~w~EgLisAAkaV~~a~~~Lv~aA~~~~~g 83 (200)
T smart00307 4 LEVDESILEAAKAITKAIAALVKAATNAQREIVAQGRGGASPGEFYKKNSRWTEGLISAAKAVAAATNVLVEAADGVVTG 83 (200)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 455677888888999999999976543 11 1 133457788888888777544332
Q ss_pred CCCchHHHHHHHHhhhhhHHHHHHhhhhH----HhHHHHHHHHHHHHHHHHHhhhh
Q psy13624 134 NTNNDLIRHALRSLNTSTVRLQAECAQLE----GSAERVRSCAYNMAKANKQLLTQ 185 (187)
Q Consensus 134 ~~~~e~vr~~L~~L~~~a~~Lq~eC~~~q----~~t~qv~~cAYdIAKAaK~LvT~ 185 (187)
....|.+-.+-+...++|.+|-+-|..-. ...+++..|+-.|+.|++.||-.
T Consensus 84 ~~~~E~LI~aAk~VAasTaQLVaAsrvka~~~S~~~~~L~~Ask~V~~At~~LVaa 139 (200)
T smart00307 84 KGSEEELIVAAKEVAASTAQLVAASRVKADKDSQAQDRLQAASKAVTNATANLVAA 139 (200)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 34789999999999999999999996331 13788999999999999999853
No 6
>smart00338 BRLZ basic region leucin zipper.
Probab=90.18 E-value=0.72 Score=31.88 Aligned_cols=32 Identities=31% Similarity=0.482 Sum_probs=22.2
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy13624 4 EAHITHLNNEIAKLKTQVQQVIGENETLKAAL 35 (187)
Q Consensus 4 ea~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~ 35 (187)
|.++++|..+...|+..|..|..||..|+..+
T Consensus 32 e~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 32 ERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566777777777777777777777777544
No 7
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=89.82 E-value=0.87 Score=33.17 Aligned_cols=29 Identities=28% Similarity=0.355 Sum_probs=23.1
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHhhhHHHH
Q psy13624 4 EAHITHLNNEIAKLKTQVQQVIGENETLK 32 (187)
Q Consensus 4 ea~iq~l~~ei~~Lq~~i~~L~~EN~~Lk 32 (187)
|+||+.+-+.|..||.+|+.|..+|..|+
T Consensus 10 E~ki~~aveti~~Lq~e~eeLke~n~~L~ 38 (72)
T PF06005_consen 10 EEKIQQAVETIALLQMENEELKEKNNELK 38 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 67888888888888888888888655555
No 8
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=89.06 E-value=0.7 Score=32.96 Aligned_cols=29 Identities=31% Similarity=0.393 Sum_probs=26.0
Q ss_pred HHhHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy13624 7 ITHLNNEIAKLKTQVQQVIGENETLKAAL 35 (187)
Q Consensus 7 iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~ 35 (187)
+.-|++.|..|+..+.+|+.||+-||+..
T Consensus 16 VevLK~~I~eL~~~n~~Le~EN~~Lk~~~ 44 (59)
T PF01166_consen 16 VEVLKEQIAELEERNSQLEEENNLLKQNA 44 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 55799999999999999999999999654
No 9
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=89.00 E-value=0.83 Score=34.28 Aligned_cols=34 Identities=18% Similarity=0.364 Sum_probs=30.1
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHhhhHHHHHHHhh
Q psy13624 4 EAHITHLNNEIAKLKTQVQQVIGENETLKAALNA 37 (187)
Q Consensus 4 ea~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~~~ 37 (187)
|+|||.--++|..||.+|+.|..+|.+|....+.
T Consensus 10 E~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 10 EAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999876554
No 10
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=88.09 E-value=1.2 Score=30.85 Aligned_cols=33 Identities=33% Similarity=0.509 Sum_probs=27.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhhHHHHHHHhhc
Q psy13624 6 HITHLNNEIAKLKTQVQQVIGENETLKAALNAR 38 (187)
Q Consensus 6 ~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~~~~ 38 (187)
++.+++.++..|++++++++.||..|+.++...
T Consensus 18 ~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 18 RYYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455888999999999999999999999877654
No 11
>PF12026 DUF3513: Domain of unknown function (DUF3513); InterPro: IPR021901 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 192 to 218 amino acids in length. This domain is found associated with PF00018 from PFAM, PF08824 from PFAM. This domain has a conserved QPP sequence motif. ; PDB: 3T6G_D 1X27_N.
Probab=86.56 E-value=6.8 Score=34.01 Aligned_cols=102 Identities=13% Similarity=0.166 Sum_probs=70.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhccCCCCCCccchHHHHHHHHHHHH---hhcCCCCCchHHHHHHHHhhhhhHHHHHHhh
Q psy13624 83 SEEVVRRTDQVTKRIQELAAHMRSSDKCHSFVPHAERIRIAVSELS---AIFPQNTNNDLIRHALRSLNTSTVRLQAECA 159 (187)
Q Consensus 83 ~e~Vir~TE~vT~~IqeLl~aaq~~~~~~~fvpcae~I~~AV~el~---alFP~~~~~e~vr~~L~~L~~~a~~Lq~eC~ 159 (187)
.+........++++|..++.....+.-...||++|-.|..+-..|+ .-.=..-...+||.-+-.-.+.-.-+...|-
T Consensus 93 ~~q~~~~~~~L~~AId~F~~sv~~nQPP~iFv~~sK~VIl~ahkLVfiGDTl~r~~~~~dvr~~v~~~s~~Lc~~LK~~v 172 (210)
T PF12026_consen 93 SEQCRLHFGALQKAIDAFFSSVSNNQPPKIFVAHSKFVILSAHKLVFIGDTLCREAQSADVRNEVLCSSNQLCDLLKTLV 172 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHHHHHHHC--SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCcchhhhcCcEEEEEeeeeeeeccHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677888999999999999987666899999999999999998 5554445566777655433322222223331
Q ss_pred h------hHH----hHHHHHHHHHHHHHHHHHhhh
Q psy13624 160 Q------LEG----SAERVRSCAYNMAKANKQLLT 184 (187)
Q Consensus 160 ~------~q~----~t~qv~~cAYdIAKAaK~LvT 184 (187)
. +++ ++++..+++-+|++.|.++=+
T Consensus 173 ~aTK~AAl~yPs~~AlqeMvd~v~eLs~~A~qfr~ 207 (210)
T PF12026_consen 173 LATKKAALQYPSPSALQEMVDRVKELSQHAQQFRT 207 (210)
T ss_dssp HHHHHHHHT-S-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 111 499999999999999998754
No 12
>PRK00295 hypothetical protein; Provisional
Probab=84.46 E-value=4.8 Score=28.79 Aligned_cols=36 Identities=11% Similarity=0.131 Sum_probs=27.5
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHhhhHHHHHHHhhcC
Q psy13624 4 EAHITHLNNEIAKLKTQVQQVIGENETLKAALNARN 39 (187)
Q Consensus 4 ea~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~~~~~ 39 (187)
|..|.+|++.+-+.|..|..|+.+-..|+.++....
T Consensus 18 E~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 18 DDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455668888888888888888888888877665543
No 13
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.76 E-value=2.5 Score=31.51 Aligned_cols=32 Identities=19% Similarity=0.383 Sum_probs=27.6
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy13624 4 EAHITHLNNEIAKLKTQVQQVIGENETLKAAL 35 (187)
Q Consensus 4 ea~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~ 35 (187)
|+|||.--+.|..||.+|+.|..+|.+|-+..
T Consensus 10 E~KiqqAvdTI~LLQmEieELKEknn~l~~e~ 41 (79)
T COG3074 10 EAKVQQAIDTITLLQMEIEELKEKNNSLSQEV 41 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHH
Confidence 78999999999999999999999999886544
No 14
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=83.22 E-value=2.1 Score=34.26 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHhhcC
Q psy13624 13 EIAKLKTQVQQVIGENETLKAALNARN 39 (187)
Q Consensus 13 ei~~Lq~~i~~L~~EN~~Lk~~~~~~~ 39 (187)
...+|..++++|+-||..||.++....
T Consensus 4 t~EeLaaeL~kLqmENk~LKkkl~~~~ 30 (118)
T PF05812_consen 4 TMEELAAELQKLQMENKALKKKLRQSV 30 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 346789999999999999999886543
No 15
>PRK00736 hypothetical protein; Provisional
Probab=82.43 E-value=6.9 Score=27.95 Aligned_cols=35 Identities=20% Similarity=0.251 Sum_probs=27.2
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHhhhHHHHHHHhhc
Q psy13624 4 EAHITHLNNEIAKLKTQVQQVIGENETLKAALNAR 38 (187)
Q Consensus 4 ea~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~~~~ 38 (187)
|..|.+|++.+-+.|..|..|+.+...|+.++...
T Consensus 18 e~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00736 18 EKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSL 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566888888888888999988888887766553
No 16
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=81.65 E-value=3.3 Score=29.48 Aligned_cols=33 Identities=24% Similarity=0.373 Sum_probs=27.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhhHHHHHHHhhc
Q psy13624 6 HITHLNNEIAKLKTQVQQVIGENETLKAALNAR 38 (187)
Q Consensus 6 ~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~~~~ 38 (187)
.+.++..++..++.++.+++.||..|+.+...-
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l 57 (85)
T TIGR02209 25 QTRQLNNELQKLQLEIDKLQKEWRDLQLEVAEL 57 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445888899999999999999999999776553
No 17
>PRK04406 hypothetical protein; Provisional
Probab=81.19 E-value=7.6 Score=28.39 Aligned_cols=36 Identities=11% Similarity=0.243 Sum_probs=28.2
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHhhhHHHHHHHhhcC
Q psy13624 4 EAHITHLNNEIAKLKTQVQQVIGENETLKAALNARN 39 (187)
Q Consensus 4 ea~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~~~~~ 39 (187)
|..|.+|++.+-..|.+|..|+.+-..|+.++....
T Consensus 24 E~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 24 EQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445668888888889999999988888887775543
No 18
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=80.85 E-value=3 Score=32.47 Aligned_cols=29 Identities=34% Similarity=0.586 Sum_probs=22.6
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHhhhHHHH
Q psy13624 4 EAHITHLNNEIAKLKTQVQQVIGENETLK 32 (187)
Q Consensus 4 ea~iq~l~~ei~~Lq~~i~~L~~EN~~Lk 32 (187)
|.+|..|.++|..|+..|..|-.||..|+
T Consensus 14 e~~l~~l~~~~~~LK~~~~~l~EEN~~L~ 42 (107)
T PF06156_consen 14 EQQLGQLLEELEELKKQLQELLEENARLR 42 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677888888888888888777777666
No 19
>PHA03162 hypothetical protein; Provisional
Probab=80.58 E-value=3.1 Score=34.06 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHhh
Q psy13624 14 IAKLKTQVQQVIGENETLKAALNA 37 (187)
Q Consensus 14 i~~Lq~~i~~L~~EN~~Lk~~~~~ 37 (187)
..+|..++++|+-||..||.++..
T Consensus 15 mEeLaaeL~kLqmENK~LKkkl~~ 38 (135)
T PHA03162 15 MEDLAAEIAKLQLENKALKKKIKE 38 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457889999999999999998844
No 20
>PRK02793 phi X174 lysis protein; Provisional
Probab=80.34 E-value=8.6 Score=27.75 Aligned_cols=36 Identities=19% Similarity=0.245 Sum_probs=28.9
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHhhhHHHHHHHhhcC
Q psy13624 4 EAHITHLNNEIAKLKTQVQQVIGENETLKAALNARN 39 (187)
Q Consensus 4 ea~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~~~~~ 39 (187)
|..|.+|++.+-+.|..|..|+.+-..|+.++....
T Consensus 21 e~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 21 EITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 455668888999999999999999888887776643
No 21
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=79.93 E-value=3.6 Score=28.90 Aligned_cols=30 Identities=27% Similarity=0.551 Sum_probs=20.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy13624 6 HITHLNNEIAKLKTQVQQVIGENETLKAAL 35 (187)
Q Consensus 6 ~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~ 35 (187)
||.++..++..+...|..+++||.+|+..+
T Consensus 1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~v 30 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVKKENEEISESV 30 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777777776443
No 22
>PHA03155 hypothetical protein; Provisional
Probab=79.19 E-value=3.3 Score=33.05 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHhh
Q psy13624 14 IAKLKTQVQQVIGENETLKAALNA 37 (187)
Q Consensus 14 i~~Lq~~i~~L~~EN~~Lk~~~~~ 37 (187)
...|..++++|+-||..||.++.+
T Consensus 10 vEeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 10 VEELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 357889999999999999988844
No 23
>PRK02119 hypothetical protein; Provisional
Probab=78.79 E-value=10 Score=27.48 Aligned_cols=36 Identities=11% Similarity=0.157 Sum_probs=28.7
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHhhhHHHHHHHhhcC
Q psy13624 4 EAHITHLNNEIAKLKTQVQQVIGENETLKAALNARN 39 (187)
Q Consensus 4 ea~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~~~~~ 39 (187)
|..|.+|++.+-+.|.+|..|+.+...|+.++....
T Consensus 22 E~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 22 ENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 456668888899999999999999888887775543
No 24
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=78.07 E-value=18 Score=29.14 Aligned_cols=66 Identities=23% Similarity=0.415 Sum_probs=52.9
Q ss_pred hhHHHHhHHHHHHHHHHHHHHHHhhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCCC
Q psy13624 3 SEAHITHLNNEIAKLKTQVQQVIGENETLKAALNARNSATHHQPPETEPVSDSSWCSPQRPASMYNVTVNAQSTTTRMPQ 82 (187)
Q Consensus 3 Sea~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~~~~~~~~~~~~~~~~p~~~~~~~~~~Rp~SMye~~~~~~~t~~~~P~ 82 (187)
|+..+.++..+|..|+.++..|..++..|+..+.... ..|+
T Consensus 70 s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~---------------------------------------~~~t 110 (169)
T PF07106_consen 70 SPEELAELDAEIKELREELAELKKEVKSLEAELASLS---------------------------------------SEPT 110 (169)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------------------------------cCCC
Confidence 5666778888999999999999999999987775542 1477
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhccC
Q psy13624 83 SEEVVRRTDQVTKRIQELAAHMRSS 107 (187)
Q Consensus 83 ~e~Vir~TE~vT~~IqeLl~aaq~~ 107 (187)
.+++....+++..-|.+|-.-....
T Consensus 111 ~~el~~~i~~l~~e~~~l~~kL~~l 135 (169)
T PF07106_consen 111 NEELREEIEELEEEIEELEEKLEKL 135 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999888887766653
No 25
>PRK00846 hypothetical protein; Provisional
Probab=78.03 E-value=9.9 Score=28.23 Aligned_cols=36 Identities=17% Similarity=0.119 Sum_probs=29.4
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHhhhHHHHHHHhhcC
Q psy13624 4 EAHITHLNNEIAKLKTQVQQVIGENETLKAALNARN 39 (187)
Q Consensus 4 ea~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~~~~~ 39 (187)
|..|.+|++.+...|..|.+|+.....|+.++....
T Consensus 26 e~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 26 EQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 556778999999999999999999888887776644
No 26
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=75.23 E-value=6.1 Score=30.34 Aligned_cols=34 Identities=15% Similarity=0.236 Sum_probs=27.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhhHHHHHHHhhcC
Q psy13624 6 HITHLNNEIAKLKTQVQQVIGENETLKAALNARN 39 (187)
Q Consensus 6 ~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~~~~~ 39 (187)
+..+++.++..++.++++|+.+|..|+.++..-.
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3458889999999999999999999997776543
No 27
>PF08913 VBS: Vinculin Binding Site; InterPro: IPR015009 Vinculin binding sites are predominantly found in talin and talin-like molecules, enabling binding of vinculin to talin, stabilising integrin-mediated cell-matrix junctions. Talin, in turn, links integrins to the actin cytoskeleton. The consensus sequence for Vinculin binding sites is LxxAAxxVAxxVxxLIxxA, with a secondary structure prediction of four amphipathic helices. The hydrophobic residues that define the VBS are themselves 'masked' and are buried in the core of a series of helical bundles that make up the talin rod []. ; PDB: 2L10_A 2KVP_A 2B0H_A 1RKC_B 1XWJ_B.
Probab=73.69 E-value=44 Score=26.66 Aligned_cols=101 Identities=17% Similarity=0.268 Sum_probs=76.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhccCCCCCCccchHHHHHHHHHHH-------HhhcCCCCCchHHHHHHHHhhhhhHHHHH
Q psy13624 84 EEVVRRTDQVTKRIQELAAHMRSSDKCHSFVPHAERIRIAVSEL-------SAIFPQNTNNDLIRHALRSLNTSTVRLQA 156 (187)
Q Consensus 84 e~Vir~TE~vT~~IqeLl~aaq~~~~~~~fvpcae~I~~AV~el-------~alFP~~~~~e~vr~~L~~L~~~a~~Lq~ 156 (187)
..+++.++.|.+-++++...+.. .++...+.|..+-.-..+| ++.-|.......|+.+++.|..+...|--
T Consensus 7 t~mv~~ak~ia~~a~emv~ks~~--~p~eL~~la~~lt~~y~~La~~~~~aaat~~~~ev~~~i~~~vq~LG~sc~~Lv~ 84 (125)
T PF08913_consen 7 TRMVEAAKEIARTAQEMVTKSRT--NPEELGTLANDLTHDYSQLAQDAKGAAATTPSAEVQNRIKSAVQDLGMSCIELVQ 84 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHCCSSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHccC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999988776 4467777777665554444 34555555677899999999999888877
Q ss_pred HhhhhH------HhHHHHHHHHHHHHHHHHHhhhhc
Q psy13624 157 ECAQLE------GSAERVRSCAYNMAKANKQLLTQF 186 (187)
Q Consensus 157 eC~~~q------~~t~qv~~cAYdIAKAaK~LvT~f 186 (187)
-+..++ ..-+++..+|-++....-++|.-.
T Consensus 85 aag~~~~~P~d~~~k~~L~~~AR~v~EkVs~VlaaL 120 (125)
T PF08913_consen 85 AAGAVQSNPSDPYAKRELADAARAVSEKVSQVLAAL 120 (125)
T ss_dssp HHHHHHH-TT-HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhCcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776664 358899999999988887777543
No 28
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=72.15 E-value=9 Score=27.19 Aligned_cols=36 Identities=19% Similarity=0.316 Sum_probs=26.1
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHhhhHHHHHHHhhcC
Q psy13624 4 EAHITHLNNEIAKLKTQVQQVIGENETLKAALNARN 39 (187)
Q Consensus 4 ea~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~~~~~ 39 (187)
|..|.+|++.+...|.+|.+|+.+...|+.++....
T Consensus 17 e~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 17 EDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456678888888889999999999988887775543
No 29
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=72.04 E-value=4.4 Score=27.67 Aligned_cols=24 Identities=25% Similarity=0.472 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHH
Q psy13624 9 HLNNEIAKLKTQVQQVIGENETLK 32 (187)
Q Consensus 9 ~l~~ei~~Lq~~i~~L~~EN~~Lk 32 (187)
.++-++++++++++++++|+.+|+
T Consensus 45 ~~r~~~~~~~k~l~~le~e~~~lr 68 (68)
T PF06305_consen 45 RLRRRIRRLRKELKKLEKELEQLR 68 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 678899999999999999998874
No 30
>PRK10884 SH3 domain-containing protein; Provisional
Probab=72.03 E-value=7.9 Score=33.18 Aligned_cols=34 Identities=24% Similarity=0.263 Sum_probs=20.7
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHhhhHHHHHHHhh
Q psy13624 4 EAHITHLNNEIAKLKTQVQQVIGENETLKAALNA 37 (187)
Q Consensus 4 ea~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~~~ 37 (187)
+..+.+|+++..+|+.+++.+++||..|+.+++.
T Consensus 131 ~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~ 164 (206)
T PRK10884 131 DSVINGLKEENQKLKNQLIVAQKKVDAANLQLDD 164 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456666666666666666666666655443
No 31
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=70.69 E-value=12 Score=25.10 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=11.3
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHH
Q psy13624 9 HLNNEIAKLKTQVQQVIGENETLK 32 (187)
Q Consensus 9 ~l~~ei~~Lq~~i~~L~~EN~~Lk 32 (187)
+|..++..|...+..|..++..|+
T Consensus 29 ~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 29 ELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444444444444444443
No 32
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=70.38 E-value=8.3 Score=30.31 Aligned_cols=29 Identities=31% Similarity=0.510 Sum_probs=18.4
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHhhhHHHH
Q psy13624 4 EAHITHLNNEIAKLKTQVQQVIGENETLK 32 (187)
Q Consensus 4 ea~iq~l~~ei~~Lq~~i~~L~~EN~~Lk 32 (187)
|.+|..+-.++..|+..|..|-.||..|+
T Consensus 14 e~~l~~l~~el~~LK~~~~el~EEN~~L~ 42 (110)
T PRK13169 14 EQNLGVLLKELGALKKQLAELLEENTALR 42 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666777777777666666555555
No 33
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=70.12 E-value=7.4 Score=33.64 Aligned_cols=29 Identities=28% Similarity=0.346 Sum_probs=26.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhhhHHHHH
Q psy13624 5 AHITHLNNEIAKLKTQVQQVIGENETLKA 33 (187)
Q Consensus 5 a~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~ 33 (187)
.++|....||+.|+-.-++|+.||.+|+.
T Consensus 48 rrlQ~hl~EIR~LKe~NqkLqedNqELRd 76 (195)
T PF10226_consen 48 RRLQQHLNEIRGLKEVNQKLQEDNQELRD 76 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788889999999999999999999994
No 34
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=69.62 E-value=11 Score=28.59 Aligned_cols=36 Identities=14% Similarity=0.405 Sum_probs=31.4
Q ss_pred chhHHHHhHHHHHHHHHHHHHHHHhhhHHHHHHHhh
Q psy13624 2 ISEAHITHLNNEIAKLKTQVQQVIGENETLKAALNA 37 (187)
Q Consensus 2 ~Sea~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~~~ 37 (187)
+|..++.+|++++..|+.++.++.++...+|.....
T Consensus 21 As~~kvdqLss~V~~L~~kvdql~~dv~~a~aaa~a 56 (85)
T PRK09973 21 VNEQKVNQLASNVQTLNAKIARLEQDMKALRPQIYA 56 (85)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356789999999999999999999999999976544
No 35
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=68.25 E-value=12 Score=27.86 Aligned_cols=31 Identities=23% Similarity=0.319 Sum_probs=27.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy13624 5 AHITHLNNEIAKLKTQVQQVIGENETLKAAL 35 (187)
Q Consensus 5 a~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~ 35 (187)
.|.+-+.++|..|+.++..|..||..|+.++
T Consensus 68 rK~~~l~~~i~~l~~ke~~l~~en~~L~~~~ 98 (100)
T PF01486_consen 68 RKDQLLMEQIEELKKKERELEEENNQLRQKI 98 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556889999999999999999999999776
No 36
>PRK04325 hypothetical protein; Provisional
Probab=67.09 E-value=27 Score=25.27 Aligned_cols=35 Identities=17% Similarity=0.216 Sum_probs=27.3
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHhhhHHHHHHHhhc
Q psy13624 4 EAHITHLNNEIAKLKTQVQQVIGENETLKAALNAR 38 (187)
Q Consensus 4 ea~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~~~~ 38 (187)
|..|.+|++.|-..|.+|..|+.+-..|..++...
T Consensus 22 E~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~ 56 (74)
T PRK04325 22 EDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDA 56 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667888888888888888888888887666543
No 37
>PRK15396 murein lipoprotein; Provisional
Probab=67.05 E-value=14 Score=27.51 Aligned_cols=36 Identities=22% Similarity=0.450 Sum_probs=30.2
Q ss_pred chhHHHHhHHHHHHHHHHHHHHHHhhhHHHHHHHhh
Q psy13624 2 ISEAHITHLNNEIAKLKTQVQQVIGENETLKAALNA 37 (187)
Q Consensus 2 ~Sea~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~~~ 37 (187)
+|..++.+|+.++..|+.++.++.++...++.....
T Consensus 22 As~~kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~ 57 (78)
T PRK15396 22 SSNAKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQA 57 (78)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788899999999999999999999999865543
No 38
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=66.52 E-value=17 Score=24.85 Aligned_cols=26 Identities=31% Similarity=0.465 Sum_probs=12.5
Q ss_pred HHhHHHHHHHHHHHHHHHHhhhHHHH
Q psy13624 7 ITHLNNEIAKLKTQVQQVIGENETLK 32 (187)
Q Consensus 7 iq~l~~ei~~Lq~~i~~L~~EN~~Lk 32 (187)
+..|..+...|+..+..|..++..|+
T Consensus 35 ~~~L~~en~~L~~~~~~L~~~~~~L~ 60 (64)
T PF00170_consen 35 VEELESENEELKKELEQLKKEIQSLK 60 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444
No 39
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=65.84 E-value=9.9 Score=24.11 Aligned_cols=28 Identities=25% Similarity=0.434 Sum_probs=22.3
Q ss_pred HHHHHHHhhcCCCCCchHHHHHHHHhhhh
Q psy13624 122 IAVSELSAIFPQNTNNDLIRHALRSLNTS 150 (187)
Q Consensus 122 ~AV~el~alFP~~~~~e~vr~~L~~L~~~ 150 (187)
..|..|.++||..+ .+.|+.+|+.-+.+
T Consensus 3 ~~v~~L~~mFP~~~-~~~I~~~L~~~~~~ 30 (42)
T PF02845_consen 3 EMVQQLQEMFPDLD-REVIEAVLQANNGD 30 (42)
T ss_dssp HHHHHHHHHSSSS--HHHHHHHHHHTTTT
T ss_pred HHHHHHHHHCCCCC-HHHHHHHHHHcCCC
Confidence 46889999999998 88999998776654
No 40
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=65.49 E-value=11 Score=28.91 Aligned_cols=29 Identities=28% Similarity=0.305 Sum_probs=25.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy13624 6 HITHLNNEIAKLKTQVQQVIGENETLKAA 34 (187)
Q Consensus 6 ~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~ 34 (187)
.+..+.+||.+|+.++.+|.-||.-||..
T Consensus 72 ~~~~~~~ei~~L~~el~~L~~E~diLKKa 100 (121)
T PRK09413 72 ELAAAMKQIKELQRLLGKKTMENELLKEA 100 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999953
No 41
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=65.46 E-value=11 Score=25.16 Aligned_cols=28 Identities=25% Similarity=0.381 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHh
Q psy13624 9 HLNNEIAKLKTQVQQVIGENETLKAALN 36 (187)
Q Consensus 9 ~l~~ei~~Lq~~i~~L~~EN~~Lk~~~~ 36 (187)
--+..+..|...|..|..+|..|+.++.
T Consensus 22 rkk~~~~~le~~~~~L~~en~~L~~~i~ 49 (54)
T PF07716_consen 22 RKKQREEELEQEVQELEEENEQLRQEIA 49 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777888888888888888887654
No 42
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=65.27 E-value=17 Score=26.47 Aligned_cols=27 Identities=37% Similarity=0.405 Sum_probs=14.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhhHHHH
Q psy13624 6 HITHLNNEIAKLKTQVQQVIGENETLK 32 (187)
Q Consensus 6 ~iq~l~~ei~~Lq~~i~~L~~EN~~Lk 32 (187)
+|+-|+-|+..|+.+...|..+|..|+
T Consensus 19 ti~~Lq~e~eeLke~n~~L~~e~~~L~ 45 (72)
T PF06005_consen 19 TIALLQMENEELKEKNNELKEENEELK 45 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 455666666666666444444444444
No 43
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=64.21 E-value=17 Score=27.28 Aligned_cols=36 Identities=22% Similarity=0.442 Sum_probs=32.3
Q ss_pred chhHHHHhHHHHHHHHHHHHHHHHhhhHHHHHHHhh
Q psy13624 2 ISEAHITHLNNEIAKLKTQVQQVIGENETLKAALNA 37 (187)
Q Consensus 2 ~Sea~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~~~ 37 (187)
.|++||.+++...+.|-.+|.+|......++.....
T Consensus 22 ~s~aK~dqlss~vq~LnAkv~qLe~dv~a~~~~~qA 57 (78)
T COG4238 22 SSNAKIDQLSSDVQTLNAKVDQLENDVNAMRSDVQA 57 (78)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999876644
No 44
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=64.15 E-value=18 Score=35.04 Aligned_cols=26 Identities=12% Similarity=0.233 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhh
Q psy13624 12 NEIAKLKTQVQQVIGENETLKAALNA 37 (187)
Q Consensus 12 ~ei~~Lq~~i~~L~~EN~~Lk~~~~~ 37 (187)
.+...++.+|+.|+.||..|+.++..
T Consensus 97 aq~~dle~KIkeLEaE~~~Lk~Ql~a 122 (475)
T PRK13729 97 KQRGDDQRRIEKLGQDNAALAEQVKA 122 (475)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 33446777788999999999988743
No 45
>smart00338 BRLZ basic region leucin zipper.
Probab=63.78 E-value=20 Score=24.58 Aligned_cols=27 Identities=19% Similarity=0.356 Sum_probs=12.7
Q ss_pred HhHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy13624 8 THLNNEIAKLKTQVQQVIGENETLKAA 34 (187)
Q Consensus 8 q~l~~ei~~Lq~~i~~L~~EN~~Lk~~ 34 (187)
++|..++..|..+...|..++..|+..
T Consensus 29 ~~Le~~~~~L~~en~~L~~~~~~l~~e 55 (65)
T smart00338 29 EELERKVEQLEAENERLKKEIERLRRE 55 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444433
No 46
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=63.53 E-value=12 Score=26.68 Aligned_cols=28 Identities=14% Similarity=0.323 Sum_probs=13.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhhhHHHH
Q psy13624 5 AHITHLNNEIAKLKTQVQQVIGENETLK 32 (187)
Q Consensus 5 a~iq~l~~ei~~Lq~~i~~L~~EN~~Lk 32 (187)
.++++-...++.|..+|..|..+-..++
T Consensus 32 ~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 32 SKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444444444444444444444443
No 47
>KOG4196|consensus
Probab=61.87 E-value=17 Score=29.79 Aligned_cols=29 Identities=38% Similarity=0.541 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHhh
Q psy13624 9 HLNNEIAKLKTQVQQVIGENETLKAALNA 37 (187)
Q Consensus 9 ~l~~ei~~Lq~~i~~L~~EN~~Lk~~~~~ 37 (187)
+|..+-..|+.+|++|..||+.++..++.
T Consensus 78 eLE~~k~~L~qqv~~L~~e~s~~~~E~da 106 (135)
T KOG4196|consen 78 ELEKEKAELQQQVEKLKEENSRLRRELDA 106 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888899999999999999999866655
No 48
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=61.62 E-value=16 Score=31.57 Aligned_cols=31 Identities=32% Similarity=0.531 Sum_probs=21.5
Q ss_pred HhHHHHHHHHHHHHH---HHHhhhHHHHHHHhhc
Q psy13624 8 THLNNEIAKLKTQVQ---QVIGENETLKAALNAR 38 (187)
Q Consensus 8 q~l~~ei~~Lq~~i~---~L~~EN~~Lk~~~~~~ 38 (187)
.+|++|+..|+.++. .++.||..||..++..
T Consensus 79 ~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~~~ 112 (276)
T PRK13922 79 EELKKELLELESRLQELEQLEAENARLRELLNLK 112 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 366666666666655 6688888998776554
No 49
>PF13324 GCIP: Grap2 and cyclin-D-interacting; PDB: 3AY5_A.
Probab=61.27 E-value=58 Score=28.34 Aligned_cols=70 Identities=19% Similarity=0.255 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHhhc--CCCCCchHHHHHHHHhhhhhHHHHHHhhhh-----HHhHHHHHHHHHHHHHHHHHhhhhc
Q psy13624 117 AERIRIAVSELSAIF--PQNTNNDLIRHALRSLNTSTVRLQAECAQL-----EGSAERVRSCAYNMAKANKQLLTQF 186 (187)
Q Consensus 117 ae~I~~AV~el~alF--P~~~~~e~vr~~L~~L~~~a~~Lq~eC~~~-----q~~t~qv~~cAYdIAKAaK~LvT~f 186 (187)
+..|..-+|.+.=+| |..|..+++...+..+..+...|-.-|..+ -..-..|+..+.+|-.+..+|+..|
T Consensus 8 ~~~~s~~aTkl~l~~~~~~~P~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~G~tL~~~i~~~v~~lv~~~~~L~~~~ 84 (275)
T PF13324_consen 8 AKALSHEATKLSLVFSKPPLPSPEEAQELCESLFNALLGLLSLYHGLPKGQGPTLRKEIRSAVKSLVDSSIQLVEEL 84 (275)
T ss_dssp HHHHHHHHHHHHHHTTSSS---HHHHHHHHHHHHHHHHHHHHHHTTS-GGG-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhCcHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888899999999 667778888888888888777777777555 1136788888888888888887643
No 50
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=60.87 E-value=18 Score=26.49 Aligned_cols=32 Identities=25% Similarity=0.380 Sum_probs=25.5
Q ss_pred HHhHHHHHHHHHHHHHHHHhhhHHHHHHHhhc
Q psy13624 7 ITHLNNEIAKLKTQVQQVIGENETLKAALNAR 38 (187)
Q Consensus 7 iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~~~~ 38 (187)
...+..++..+++++.+|+.||.+|+-+.+..
T Consensus 37 ~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l 68 (97)
T PF04999_consen 37 SRQLFYELQQLEKEIDQLQEENERLRLEIATL 68 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34677889999999999999999998655543
No 51
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=60.63 E-value=15 Score=32.33 Aligned_cols=27 Identities=22% Similarity=0.354 Sum_probs=17.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhhHHHH
Q psy13624 6 HITHLNNEIAKLKTQVQQVIGENETLK 32 (187)
Q Consensus 6 ~iq~l~~ei~~Lq~~i~~L~~EN~~Lk 32 (187)
|..+|++|++.++.++..|+.|...||
T Consensus 94 Rn~ELE~elr~~~~~~~~L~~Ev~~L~ 120 (248)
T PF08172_consen 94 RNAELEEELRKQQQTISSLRREVESLR 120 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445777777776666666666666666
No 52
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=58.40 E-value=18 Score=30.47 Aligned_cols=28 Identities=25% Similarity=0.354 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHh
Q psy13624 9 HLNNEIAKLKTQVQQVIGENETLKAALN 36 (187)
Q Consensus 9 ~l~~ei~~Lq~~i~~L~~EN~~Lk~~~~ 36 (187)
.|+.|+..||.+++.|++||..|+..+.
T Consensus 108 ~l~~e~~~l~~~~e~Le~e~~~L~~~~~ 135 (161)
T TIGR02894 108 RLKNQNESLQKRNEELEKELEKLRQRLS 135 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778888888888888888888876543
No 53
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=58.21 E-value=26 Score=26.71 Aligned_cols=28 Identities=25% Similarity=0.425 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhh
Q psy13624 10 LNNEIAKLKTQVQQVIGENETLKAALNA 37 (187)
Q Consensus 10 l~~ei~~Lq~~i~~L~~EN~~Lk~~~~~ 37 (187)
....|+.|+.++..|..||.+|+.+++.
T Consensus 47 wek~v~~L~~e~~~l~~E~e~L~~~l~~ 74 (87)
T PF12709_consen 47 WEKKVDELENENKALKRENEQLKKKLDT 74 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4477888888888888888888877654
No 54
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=57.85 E-value=18 Score=30.63 Aligned_cols=29 Identities=41% Similarity=0.601 Sum_probs=26.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhhhHHHHH
Q psy13624 5 AHITHLNNEIAKLKTQVQQVIGENETLKA 33 (187)
Q Consensus 5 a~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~ 33 (187)
-+|-+|.++|..|+.+++.|..||-.||.
T Consensus 12 ~ki~~L~n~l~elq~~l~~l~~ENk~Lk~ 40 (194)
T PF15619_consen 12 HKIKELQNELAELQRKLQELRKENKTLKQ 40 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46679999999999999999999999995
No 55
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=55.97 E-value=17 Score=31.97 Aligned_cols=29 Identities=21% Similarity=0.370 Sum_probs=26.6
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHhhhHHHH
Q psy13624 4 EAHITHLNNEIAKLKTQVQQVIGENETLK 32 (187)
Q Consensus 4 ea~iq~l~~ei~~Lq~~i~~L~~EN~~Lk 32 (187)
|..+..+..++..|+.+|++|+.+|..|=
T Consensus 99 E~elr~~~~~~~~L~~Ev~~L~~DN~kLY 127 (248)
T PF08172_consen 99 EEELRKQQQTISSLRREVESLRADNVKLY 127 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777899999999999999999999996
No 56
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=55.42 E-value=34 Score=24.65 Aligned_cols=28 Identities=21% Similarity=0.139 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHh
Q psy13624 9 HLNNEIAKLKTQVQQVIGENETLKAALN 36 (187)
Q Consensus 9 ~l~~ei~~Lq~~i~~L~~EN~~Lk~~~~ 36 (187)
.|+.|.+.|...+..++.|+..|+....
T Consensus 18 ~L~~EN~~Lr~q~~~~~~ER~~L~ekne 45 (65)
T TIGR02449 18 RLKSENRLLRAQEKTWREERAQLLEKNE 45 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777888888888888888875443
No 57
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=55.34 E-value=33 Score=24.11 Aligned_cols=30 Identities=13% Similarity=0.335 Sum_probs=26.2
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHhhhHHHHH
Q psy13624 4 EAHITHLNNEIAKLKTQVQQVIGENETLKA 33 (187)
Q Consensus 4 ea~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~ 33 (187)
|.++..++..|..++++++.+..+...++.
T Consensus 6 En~~~~~~~~i~tvk~en~~i~~~ve~i~e 35 (55)
T PF05377_consen 6 ENELPRIESSINTVKKENEEISESVEKIEE 35 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888999999999999999999888874
No 58
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.17 E-value=7.6 Score=34.90 Aligned_cols=34 Identities=9% Similarity=0.131 Sum_probs=19.6
Q ss_pred CCCcccccccCCCCCCC--CCCCChhhHHHHHHHHH
Q psy13624 61 QRPASMYNVTVNAQSTT--TRMPQSEEVVRRTDQVT 94 (187)
Q Consensus 61 ~Rp~SMye~~~~~~~t~--~~~P~~e~Vir~TE~vT 94 (187)
.|..+||..|..-.|-+ -+--++-|+|-|..-|-
T Consensus 105 ~raRAmq~nG~~t~Yidvil~SkSfsD~IsRvtAi~ 140 (265)
T COG3883 105 KRARAMQVNGTATSYIDVILNSKSFSDLISRVTAIS 140 (265)
T ss_pred HHHHHHHHcCChhHHHHHHHccCcHHHHHHHHHHHH
Confidence 78999999995422211 12245566666655443
No 59
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=54.49 E-value=25 Score=24.12 Aligned_cols=29 Identities=34% Similarity=0.471 Sum_probs=22.3
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHhhhHHHH
Q psy13624 4 EAHITHLNNEIAKLKTQVQQVIGENETLK 32 (187)
Q Consensus 4 ea~iq~l~~ei~~Lq~~i~~L~~EN~~Lk 32 (187)
...+.+|+.+|..++.++.+|+.|...|+
T Consensus 23 ~~ei~~l~~~i~~l~~e~~~L~~ei~~l~ 51 (80)
T PF04977_consen 23 NQEIAELQKEIEELKKENEELKEEIERLK 51 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34567888888888888888888888883
No 60
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=54.44 E-value=17 Score=27.59 Aligned_cols=20 Identities=40% Similarity=0.458 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHhhhHHHHH
Q psy13624 14 IAKLKTQVQQVIGENETLKA 33 (187)
Q Consensus 14 i~~Lq~~i~~L~~EN~~Lk~ 33 (187)
+..+++++++|+.||.+|+.
T Consensus 25 ~~ka~~~~~kL~~en~qlk~ 44 (87)
T PF10883_consen 25 VKKAKKQNAKLQKENEQLKT 44 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666664
No 61
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=52.20 E-value=21 Score=28.77 Aligned_cols=32 Identities=31% Similarity=0.458 Sum_probs=22.9
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy13624 4 EAHITHLNNEIAKLKTQVQQVIGENETLKAAL 35 (187)
Q Consensus 4 ea~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~ 35 (187)
+..|.+|.+++..|+..+..|..|...|.+.+
T Consensus 78 d~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~ 109 (169)
T PF07106_consen 78 DAEIKELREELAELKKEVKSLEAELASLSSEP 109 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34577788888887777777777777776544
No 62
>KOG4797|consensus
Probab=50.26 E-value=22 Score=28.58 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=23.4
Q ss_pred HHhHHHHHHHHHHHHHHHHhhhHHHHH
Q psy13624 7 ITHLNNEIAKLKTQVQQVIGENETLKA 33 (187)
Q Consensus 7 iq~l~~ei~~Lq~~i~~L~~EN~~Lk~ 33 (187)
+.-|+++|+.|-.....|..||+-||.
T Consensus 69 Ve~Lk~qI~eL~er~~~Le~EN~lLk~ 95 (123)
T KOG4797|consen 69 VEVLKEQIRELEERNSALERENSLLKT 95 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346899999999999999999999994
No 63
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=50.15 E-value=19 Score=28.34 Aligned_cols=22 Identities=41% Similarity=0.483 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHhhhHHHHH
Q psy13624 12 NEIAKLKTQVQQVIGENETLKA 33 (187)
Q Consensus 12 ~ei~~Lq~~i~~L~~EN~~Lk~ 33 (187)
.+.-+|++++++|+.||+-||=
T Consensus 72 ~e~~rlkkk~~~LeEENNlLkl 93 (108)
T cd07429 72 REVLRLKKKNQQLEEENNLLKL 93 (108)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 4667899999999999999983
No 64
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=50.12 E-value=37 Score=26.40 Aligned_cols=34 Identities=21% Similarity=0.311 Sum_probs=29.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhhhHHHHHHHhhc
Q psy13624 5 AHITHLNNEIAKLKTQVQQVIGENETLKAALNAR 38 (187)
Q Consensus 5 a~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~~~~ 38 (187)
+.|..|+..+..|=.+-+.|.-||..||..+...
T Consensus 22 ~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 22 EELEELKKQLQELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677999999999999999999999999887653
No 65
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=48.38 E-value=41 Score=25.34 Aligned_cols=27 Identities=30% Similarity=0.352 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHHH-------HHhhhHHHHHHH
Q psy13624 9 HLNNEIAKLKTQVQQ-------VIGENETLKAAL 35 (187)
Q Consensus 9 ~l~~ei~~Lq~~i~~-------L~~EN~~Lk~~~ 35 (187)
+|+++...|..+++. |..||.+||...
T Consensus 29 ELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~ 62 (79)
T PRK15422 29 ELKEKNNSLSQEVQNAQHQREELERENNHLKEQQ 62 (79)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 555555555555554 777888887543
No 66
>PF12443 AKNA: AT-hook-containing transcription factor; InterPro: IPR022150 This domain family is found in eukaryotes, and is approximately 110 amino acids in length. This family contains a transcription factor which regulates the expression of the costimulatory molecules on lymphocytes.
Probab=48.06 E-value=23 Score=27.89 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=11.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhh
Q psy13624 5 AHITHLNNEIAKLKTQVQQVIGE 27 (187)
Q Consensus 5 a~iq~l~~ei~~Lq~~i~~L~~E 27 (187)
+.|+.|++.+.+|+++|+..+++
T Consensus 52 ~~~qkL~eqteeLK~kvqe~sk~ 74 (106)
T PF12443_consen 52 QMIQKLGEQTEELKDKVQEFSKR 74 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 34445555555555555544443
No 67
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=48.03 E-value=38 Score=22.51 Aligned_cols=27 Identities=30% Similarity=0.410 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy13624 9 HLNNEIAKLKTQVQQVIGENETLKAAL 35 (187)
Q Consensus 9 ~l~~ei~~Lq~~i~~L~~EN~~Lk~~~ 35 (187)
-|+..-..|......|..||..|+.++
T Consensus 9 ~LK~~yd~Lk~~~~~L~~E~~~L~aev 35 (45)
T PF02183_consen 9 ALKASYDSLKAEYDSLKKENEKLRAEV 35 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666776666554
No 68
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=46.52 E-value=45 Score=26.19 Aligned_cols=34 Identities=21% Similarity=0.293 Sum_probs=29.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhhhHHHHHHHhhc
Q psy13624 5 AHITHLNNEIAKLKTQVQQVIGENETLKAALNAR 38 (187)
Q Consensus 5 a~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~~~~ 38 (187)
+.+..|+..+..|=.+-+.|+-||..||..+...
T Consensus 22 ~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 22 KELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4577899999999999999999999999888653
No 69
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=46.34 E-value=19 Score=23.92 Aligned_cols=27 Identities=26% Similarity=0.474 Sum_probs=13.2
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy13624 9 HLNNEIAKLKTQVQQVIGENETLKAAL 35 (187)
Q Consensus 9 ~l~~ei~~Lq~~i~~L~~EN~~Lk~~~ 35 (187)
-|+..|+.|.+++.+|-+||..||...
T Consensus 18 ~l~~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 18 ALSIKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp ------------HHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHhHHHHHHHHHHHHHHHh
Confidence 467788899999999999999998654
No 70
>PF01608 I_LWEQ: I/LWEQ domain; InterPro: IPR002558 I/LWEQ domains bind to actin. It has been shown that the I/LWEQ domains from mouse talin P26039 from SWISSPROT and yeast Sla2p P33338 from SWISSPROT interact with F-actin []. The domain has four conserved blocks, the name of the domain is derived from the initial conserved amino acid of each of the four blocks []. I/LWEQ domains can be placed into four major groups based on sequence similarity: Metazoan talin. Dictyostelium discoideum (Slime mould) TalA/TalB P54633 from SWISSPROT and SLA110. Metazoan Hip1p O00291 from SWISSPROT. Saccharomyces cerevisiae Sla2p P33338 from SWISSPROT. ; GO: 0003779 actin binding; PDB: 2QDQ_A 2JSW_A 1R0D_B.
Probab=45.09 E-value=1.1e+02 Score=25.34 Aligned_cols=79 Identities=15% Similarity=0.202 Sum_probs=52.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhccCCCCCCccchHHHHHHHHHHHHhhcCCCCCchHHHHHHHHhhhhhHHHHHHhhhh-
Q psy13624 83 SEEVVRRTDQVTKRIQELAAHMRSSDKCHSFVPHAERIRIAVSELSAIFPQNTNNDLIRHALRSLNTSTVRLQAECAQL- 161 (187)
Q Consensus 83 ~e~Vir~TE~vT~~IqeLl~aaq~~~~~~~fvpcae~I~~AV~el~alFP~~~~~e~vr~~L~~L~~~a~~Lq~eC~~~- 161 (187)
+|-+|-....|......|+.+|.+.-. .....|.+-.+-+...++|.+|-+-|..-
T Consensus 9 teGLISAAKaVa~at~~LveaA~~vv~-----------------------g~~~~E~LIvaa~eVAasTAQLv~AsrVKa 65 (152)
T PF01608_consen 9 TEGLISAAKAVAAATNMLVEAADGVVQ-----------------------GTGSEEELIVAAKEVAASTAQLVAASRVKA 65 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------TS--HHHHHHHHHHHHHHHHHHHHHHCTTS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh-----------------------CCCcHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 466677777777777777777765111 22256677777788888888888888322
Q ss_pred ---HHhHHHHHHHHHHHHHHHHHhhh
Q psy13624 162 ---EGSAERVRSCAYNMAKANKQLLT 184 (187)
Q Consensus 162 ---q~~t~qv~~cAYdIAKAaK~LvT 184 (187)
-....++..++-.|.+|++.||.
T Consensus 66 ~~~S~~~~~L~~As~~V~~At~~LV~ 91 (152)
T PF01608_consen 66 DPNSKTQDRLEQASKAVKKATENLVA 91 (152)
T ss_dssp -TTSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 12367777777777777777774
No 71
>KOG3335|consensus
Probab=45.07 E-value=93 Score=26.73 Aligned_cols=27 Identities=19% Similarity=0.272 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy13624 9 HLNNEIAKLKTQVQQVIGENETLKAAL 35 (187)
Q Consensus 9 ~l~~ei~~Lq~~i~~L~~EN~~Lk~~~ 35 (187)
+|...+..|..+|+.+++.-++|.+.+
T Consensus 110 elr~~~~~l~~~i~~~~~~~~~L~~~l 136 (181)
T KOG3335|consen 110 ELRLKVEKLENAIAELTKFFSQLHSKL 136 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555555555555554333
No 72
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=44.85 E-value=33 Score=30.02 Aligned_cols=27 Identities=15% Similarity=0.229 Sum_probs=19.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhhHHHH
Q psy13624 6 HITHLNNEIAKLKTQVQQVIGENETLK 32 (187)
Q Consensus 6 ~iq~l~~ei~~Lq~~i~~L~~EN~~Lk 32 (187)
+|++|+.||++|+-.||.++-+..+++
T Consensus 62 ql~~lq~ev~~LrG~~E~~~~~l~~~~ 88 (263)
T PRK10803 62 QLSDNQSDIDSLRGQIQENQYQLNQVV 88 (263)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 344777777777777777777777776
No 73
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=44.66 E-value=38 Score=34.07 Aligned_cols=34 Identities=26% Similarity=0.428 Sum_probs=23.3
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHhhhHHHHHHHhh
Q psy13624 4 EAHITHLNNEIAKLKTQVQQVIGENETLKAALNA 37 (187)
Q Consensus 4 ea~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~~~ 37 (187)
+.+++.|..|++.|+..++.|+.|+..|++.+..
T Consensus 428 ~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~ 461 (652)
T COG2433 428 EETVERLEEENSELKRELEELKREIEKLESELER 461 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777777777777765544
No 74
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=44.37 E-value=42 Score=23.33 Aligned_cols=29 Identities=24% Similarity=0.418 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHhh
Q psy13624 9 HLNNEIAKLKTQVQQVIGENETLKAALNA 37 (187)
Q Consensus 9 ~l~~ei~~Lq~~i~~L~~EN~~Lk~~~~~ 37 (187)
|+..|+.+|++++.+++.+-..+...++.
T Consensus 1 D~~~E~~rL~Kel~kl~~~i~~~~~kL~n 29 (66)
T PF10458_consen 1 DVEAEIERLEKELEKLEKEIERLEKKLSN 29 (66)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 56789999999999999999999877743
No 75
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=43.95 E-value=40 Score=21.26 Aligned_cols=26 Identities=27% Similarity=0.517 Sum_probs=21.2
Q ss_pred HHHHHHHhhcCCCCCchHHHHHHHHhh
Q psy13624 122 IAVSELSAIFPQNTNNDLIRHALRSLN 148 (187)
Q Consensus 122 ~AV~el~alFP~~~~~e~vr~~L~~L~ 148 (187)
.+|..|..+||.-+ .+.|+.+|..-+
T Consensus 4 ~~v~~L~~mFP~l~-~~~I~~~L~~~~ 29 (43)
T smart00546 4 EALHDLKDMFPNLD-EEVIKAVLEANN 29 (43)
T ss_pred HHHHHHHHHCCCCC-HHHHHHHHHHcC
Confidence 47888999999988 888888887544
No 76
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=43.68 E-value=32 Score=24.52 Aligned_cols=29 Identities=14% Similarity=0.225 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHhh
Q psy13624 9 HLNNEIAKLKTQVQQVIGENETLKAALNA 37 (187)
Q Consensus 9 ~l~~ei~~Lq~~i~~L~~EN~~Lk~~~~~ 37 (187)
+-.+.|.-|-.+|++|+.+|..|.-.+.-
T Consensus 18 eH~~tL~~LH~EIe~Lq~~~~dL~~kL~m 46 (60)
T PF14916_consen 18 EHAQTLKGLHAEIERLQKRNKDLTFKLIM 46 (60)
T ss_pred HHHHHHHHHHHHHHHHHHhccccceeeee
Confidence 34556788888999999999999755533
No 77
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=42.46 E-value=49 Score=24.62 Aligned_cols=31 Identities=26% Similarity=0.366 Sum_probs=25.0
Q ss_pred HHhHHHHHHHHHHHHHHHHhhhHHHHHHHhh
Q psy13624 7 ITHLNNEIAKLKTQVQQVIGENETLKAALNA 37 (187)
Q Consensus 7 iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~~~ 37 (187)
|.++.+|..+|+.+|++|..|-.+++..+.-
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~~~~~qI 32 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQNKREFQI 32 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 4578888999999999998888888866444
No 78
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=42.04 E-value=36 Score=33.12 Aligned_cols=32 Identities=28% Similarity=0.407 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhhcCCC
Q psy13624 10 LNNEIAKLKTQVQQVIGENETLKAALNARNSA 41 (187)
Q Consensus 10 l~~ei~~Lq~~i~~L~~EN~~Lk~~~~~~~~~ 41 (187)
-+++|..||++++.|+.+..+|+..+..++.+
T Consensus 23 ~a~~i~~L~~ql~aLq~~v~eL~~~laa~~~a 54 (514)
T PF11336_consen 23 TADQIKALQAQLQALQDQVNELRAKLAAKPAA 54 (514)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 35788899999999999999999888776643
No 79
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=41.81 E-value=63 Score=22.93 Aligned_cols=24 Identities=25% Similarity=0.446 Sum_probs=16.9
Q ss_pred hhHHHHhHHHHHHHHHHHHHHHHh
Q psy13624 3 SEAHITHLNNEIAKLKTQVQQVIG 26 (187)
Q Consensus 3 Sea~iq~l~~ei~~Lq~~i~~L~~ 26 (187)
+|++.++|..+|..|+.+++.+.+
T Consensus 37 aE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 37 AEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 566777777777777777776654
No 80
>smart00307 ILWEQ I/LWEQ domain. Thought to possess an F-actin binding function.
Probab=40.66 E-value=1.5e+02 Score=25.60 Aligned_cols=50 Identities=20% Similarity=0.223 Sum_probs=35.0
Q ss_pred CchHHHHHHHHhhhhhHHHHHHhhhh---HHhHHHHHHHHHHHHHHHHHhhhh
Q psy13624 136 NNDLIRHALRSLNTSTVRLQAECAQL---EGSAERVRSCAYNMAKANKQLLTQ 185 (187)
Q Consensus 136 ~~e~vr~~L~~L~~~a~~Lq~eC~~~---q~~t~qv~~cAYdIAKAaK~LvT~ 185 (187)
-.|-+=++-+....++..|--.+..+ ....+++|.||-.||.+|-|||+-
T Consensus 55 w~EgLisAAkaV~~a~~~Lv~aA~~~~~g~~~~E~LI~aAk~VAasTaQLVaA 107 (200)
T smart00307 55 WTEGLISAAKAVAAATNVLVEAADGVVTGKGSEEELIVAAKEVAASTAQLVAA 107 (200)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555566666666664444333 234899999999999999999974
No 81
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=40.43 E-value=67 Score=23.15 Aligned_cols=31 Identities=19% Similarity=0.324 Sum_probs=25.1
Q ss_pred HHhHHHHHHHHHHHHHHHHhhhHHHHHHHhh
Q psy13624 7 ITHLNNEIAKLKTQVQQVIGENETLKAALNA 37 (187)
Q Consensus 7 iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~~~ 37 (187)
++.|.+.|.+|=...++|..||..|+.+...
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~ 32 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKT 32 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888899999999999976644
No 82
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=38.95 E-value=63 Score=27.67 Aligned_cols=29 Identities=21% Similarity=0.284 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHhh
Q psy13624 9 HLNNEIAKLKTQVQQVIGENETLKAALNA 37 (187)
Q Consensus 9 ~l~~ei~~Lq~~i~~L~~EN~~Lk~~~~~ 37 (187)
+|..+++.|..+++.|+..|.++...++.
T Consensus 53 ~L~~e~~~l~~e~e~L~~~~~~l~~~v~~ 81 (251)
T PF11932_consen 53 ELLAEYRQLEREIENLEVYNEQLERQVAS 81 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77778888888888888888887765543
No 83
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=38.34 E-value=57 Score=28.96 Aligned_cols=17 Identities=29% Similarity=0.300 Sum_probs=13.3
Q ss_pred HHHhhhHHHHHHHhhcC
Q psy13624 23 QVIGENETLKAALNARN 39 (187)
Q Consensus 23 ~L~~EN~~Lk~~~~~~~ 39 (187)
.|+.||..||..++-..
T Consensus 95 ~l~~EN~rLr~LL~~~~ 111 (283)
T TIGR00219 95 NLKQENVRLRELLNSPL 111 (283)
T ss_pred HHHHHHHHHHHHhcCcc
Confidence 37899999998776643
No 84
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=38.33 E-value=55 Score=24.53 Aligned_cols=28 Identities=25% Similarity=0.360 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHh
Q psy13624 9 HLNNEIAKLKTQVQQVIGENETLKAALN 36 (187)
Q Consensus 9 ~l~~ei~~Lq~~i~~L~~EN~~Lk~~~~ 36 (187)
.+..++..|...++.+..+|..|..++.
T Consensus 77 ~~~~~~~~L~~~l~~l~~eN~~L~~~i~ 104 (109)
T PF03980_consen 77 YKKKEREQLNARLQELEEENEALAEEIQ 104 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999999999999987664
No 85
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=38.29 E-value=55 Score=29.14 Aligned_cols=30 Identities=27% Similarity=0.344 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhhcC
Q psy13624 10 LNNEIAKLKTQVQQVIGENETLKAALNARN 39 (187)
Q Consensus 10 l~~ei~~Lq~~i~~L~~EN~~Lk~~~~~~~ 39 (187)
...++..++.++++|..||..||..++...
T Consensus 81 ~l~~~~~~~~~~~~l~~EN~~Lr~lL~~~~ 110 (284)
T COG1792 81 ELAELEQLLEEVESLEEENKRLKELLDFKE 110 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 334556667779999999999998876643
No 86
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=38.04 E-value=57 Score=22.98 Aligned_cols=29 Identities=24% Similarity=0.267 Sum_probs=20.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhhhHHHHH
Q psy13624 5 AHITHLNNEIAKLKTQVQQVIGENETLKA 33 (187)
Q Consensus 5 a~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~ 33 (187)
..++++..++..++.+..+|+.|-+.|.+
T Consensus 31 ~~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 31 NELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 45667777777777777777777777663
No 87
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=38.04 E-value=80 Score=24.53 Aligned_cols=34 Identities=24% Similarity=0.393 Sum_probs=25.0
Q ss_pred chhHHHHhHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy13624 2 ISEAHITHLNNEIAKLKTQVQQVIGENETLKAAL 35 (187)
Q Consensus 2 ~Sea~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~ 35 (187)
-.+..++.|..+++.|+..++.|+..-.+|+..+
T Consensus 3 ~~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~ 36 (140)
T PRK03947 3 ESEQELEELAAQLQALQAQIEALQQQLEELQASI 36 (140)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888888888888877777777543
No 88
>smart00340 HALZ homeobox associated leucin zipper.
Probab=37.98 E-value=41 Score=22.76 Aligned_cols=17 Identities=29% Similarity=0.444 Sum_probs=10.3
Q ss_pred hHHHHHHHHHHHHHHHH
Q psy13624 9 HLNNEIAKLKTQVQQVI 25 (187)
Q Consensus 9 ~l~~ei~~Lq~~i~~L~ 25 (187)
.|.+|.++||++++.|.
T Consensus 16 ~LteeNrRL~ke~~eLr 32 (44)
T smart00340 16 SLTEENRRLQKEVQELR 32 (44)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56666666666665543
No 89
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.92 E-value=1.6e+02 Score=21.76 Aligned_cols=32 Identities=22% Similarity=0.338 Sum_probs=23.7
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy13624 4 EAHITHLNNEIAKLKTQVQQVIGENETLKAAL 35 (187)
Q Consensus 4 ea~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~ 35 (187)
|..|.+|++.|-+.|..|.+++..-.-|-..+
T Consensus 21 E~tieeLn~~laEq~~~i~k~q~qlr~L~~kl 52 (72)
T COG2900 21 EQTIEELNDALAEQQLVIDKLQAQLRLLTEKL 52 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677888888888888888887665554444
No 90
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=37.47 E-value=54 Score=31.88 Aligned_cols=25 Identities=32% Similarity=0.472 Sum_probs=13.7
Q ss_pred HhHHHHHHHHHHHHHHHHhhhHHHH
Q psy13624 8 THLNNEIAKLKTQVQQVIGENETLK 32 (187)
Q Consensus 8 q~l~~ei~~Lq~~i~~L~~EN~~Lk 32 (187)
.+++.++..|..+-++|..||..||
T Consensus 69 k~~r~~~~~l~~~N~~l~~eN~~L~ 93 (472)
T TIGR03752 69 KELRKRLAKLISENEALKAENERLQ 93 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555555555554
No 91
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=37.10 E-value=82 Score=23.50 Aligned_cols=29 Identities=21% Similarity=0.383 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHhh
Q psy13624 9 HLNNEIAKLKTQVQQVIGENETLKAALNA 37 (187)
Q Consensus 9 ~l~~ei~~Lq~~i~~L~~EN~~Lk~~~~~ 37 (187)
.|.+.+..-+.+..+|.+||.-|..-++.
T Consensus 34 ~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~n 62 (80)
T PF10224_consen 34 ALSDRVEEVKEENEKLESENEYLQQYIGN 62 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666666677777777777755544
No 92
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.86 E-value=65 Score=24.10 Aligned_cols=20 Identities=30% Similarity=0.320 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHhhhHHHHHH
Q psy13624 15 AKLKTQVQQVIGENETLKAA 34 (187)
Q Consensus 15 ~~Lq~~i~~L~~EN~~Lk~~ 34 (187)
..+|...+-|..||.+||+.
T Consensus 42 q~~q~~reaL~~eneqlk~e 61 (79)
T COG3074 42 QNAQHQREALERENEQLKEE 61 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444455677778888753
No 93
>PRK10884 SH3 domain-containing protein; Provisional
Probab=36.44 E-value=69 Score=27.46 Aligned_cols=29 Identities=21% Similarity=0.347 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHhh
Q psy13624 9 HLNNEIAKLKTQVQQVIGENETLKAALNA 37 (187)
Q Consensus 9 ~l~~ei~~Lq~~i~~L~~EN~~Lk~~~~~ 37 (187)
++.+.+......+..|..||.+|+.++..
T Consensus 122 ~l~~~~~~~~~~~~~L~~~n~~L~~~l~~ 150 (206)
T PRK10884 122 EMQQKVAQSDSVINGLKEENQKLKNQLIV 150 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555566666666655543
No 94
>smart00283 MA Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.
Probab=35.14 E-value=1.9e+02 Score=23.18 Aligned_cols=20 Identities=15% Similarity=0.272 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q psy13624 165 AERVRSCAYNMAKANKQLLT 184 (187)
Q Consensus 165 t~qv~~cAYdIAKAaK~LvT 184 (187)
++++-..+.++...+..|..
T Consensus 237 ~~~~~~~~~~l~~~~~~l~~ 256 (262)
T smart00283 237 SEEISAAAEELSGLAEELKE 256 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555555566555555543
No 95
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=33.96 E-value=68 Score=22.43 Aligned_cols=26 Identities=23% Similarity=0.240 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHh
Q psy13624 11 NNEIAKLKTQVQQVIGENETLKAALN 36 (187)
Q Consensus 11 ~~ei~~Lq~~i~~L~~EN~~Lk~~~~ 36 (187)
-.+-..|..++++|..+|.+|++.+.
T Consensus 32 L~~R~~l~~e~~~L~~qN~eLr~lLk 57 (60)
T PF14775_consen 32 LLDRAALIQEKESLEQQNEELRSLLK 57 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677888999999999997653
No 96
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=33.45 E-value=96 Score=22.76 Aligned_cols=32 Identities=19% Similarity=0.393 Sum_probs=25.8
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy13624 4 EAHITHLNNEIAKLKTQVQQVIGENETLKAAL 35 (187)
Q Consensus 4 ea~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~ 35 (187)
..++..|.++|+.|+.++..++.+...++.++
T Consensus 69 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~ 100 (104)
T PF13600_consen 69 SPELKELEEELEALEDELAALQDEIQALEAQI 100 (104)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677889999999999999988888887654
No 97
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.39 E-value=75 Score=28.42 Aligned_cols=29 Identities=28% Similarity=0.415 Sum_probs=21.4
Q ss_pred HhHHHHHHHHHHHHHHHHhhhHHHHHHHh
Q psy13624 8 THLNNEIAKLKTQVQQVIGENETLKAALN 36 (187)
Q Consensus 8 q~l~~ei~~Lq~~i~~L~~EN~~Lk~~~~ 36 (187)
.+|..+++.+|+++.+|++|...+...++
T Consensus 53 ~~L~~e~~s~Q~~~~~L~~ev~~~~~~~~ 81 (247)
T COG3879 53 LDLVKELRSLQKKVNTLAAEVEDLENKLD 81 (247)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37788888888888888888777764443
No 98
>KOG0980|consensus
Probab=32.98 E-value=3e+02 Score=29.24 Aligned_cols=43 Identities=26% Similarity=0.177 Sum_probs=31.8
Q ss_pred HHHHHhhhhhHHHHHHhhhhHH--------------hHHHHHHHHHHHHHHHHHhhh
Q psy13624 142 HALRSLNTSTVRLQAECAQLEG--------------SAERVRSCAYNMAKANKQLLT 184 (187)
Q Consensus 142 ~~L~~L~~~a~~Lq~eC~~~q~--------------~t~qv~~cAYdIAKAaK~LvT 184 (187)
.|+..|--++..||+|=-.-++ -|+=+|.+|-.||+||-.||+
T Consensus 798 ~aI~~Lv~as~~lQ~EIVasgrgsas~~eFY~kNsrWTEGLISAaKAVa~aatvLVe 854 (980)
T KOG0980|consen 798 EAIMALVKASRELQTEIVASGRGSASPNEFYKKNSRWTEGLISAAKAVAWAATVLVE 854 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhcCchhHHHHHHHHHHHHHHHHHHH
Confidence 5566777777788888733311 288899999999999988886
No 99
>COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics]
Probab=32.95 E-value=1.4e+02 Score=22.75 Aligned_cols=57 Identities=19% Similarity=0.302 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhhcCCCCCchHHHHHHHHhhhhhHHHHHHh-hhhHHh----HHHHHHHHHHHHHHHH
Q psy13624 118 ERIRIAVSELSAIFPQNTNNDLIRHALRSLNTSTVRLQAEC-AQLEGS----AERVRSCAYNMAKANK 180 (187)
Q Consensus 118 e~I~~AV~el~alFP~~~~~e~vr~~L~~L~~~a~~Lq~eC-~~~q~~----t~qv~~cAYdIAKAaK 180 (187)
..|+.--..+..++|..|-.--+|.+... +++..+ ..+|.+ ..+|..-|..+|+++|
T Consensus 7 ~~~r~~~~~~~~~Lp~apv~Ri~r~~~~~------Rvs~~A~~~l~~~~e~~~~~i~~~A~~~A~ha~ 68 (91)
T COG2036 7 KEIRRYQRSTDLLLPKAPVRRILRKAGAE------RVSSSAIEELQEALEEYLEEIAEDAVELAEHAK 68 (91)
T ss_pred HHHHhhhhhhhhhcCchHHHHHHHHHhHH------HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34555556677888888866666655554 778777 555444 6778888999998886
No 100
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=32.84 E-value=83 Score=24.10 Aligned_cols=29 Identities=28% Similarity=0.363 Sum_probs=18.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhhhHHHHH
Q psy13624 5 AHITHLNNEIAKLKTQVQQVIGENETLKA 33 (187)
Q Consensus 5 a~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~ 33 (187)
+++.+++.++..|+.+.+.|..|...|++
T Consensus 34 ~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 34 DQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 44556666666666666666666666653
No 101
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=32.45 E-value=38 Score=32.96 Aligned_cols=21 Identities=24% Similarity=0.474 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHhhhHHHHH
Q psy13624 13 EIAKLKTQVQQVIGENETLKA 33 (187)
Q Consensus 13 ei~~Lq~~i~~L~~EN~~Lk~ 33 (187)
+|..|+++|++|+++...|..
T Consensus 32 kie~L~kql~~Lk~q~~~l~~ 52 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLND 52 (489)
T ss_pred HHHHHHHHHHHHHHhhccccc
Confidence 666666666666666554443
No 102
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=32.18 E-value=64 Score=23.42 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=18.5
Q ss_pred HHhHHHHHHHHHHHHHHHHhhhH
Q psy13624 7 ITHLNNEIAKLKTQVQQVIGENE 29 (187)
Q Consensus 7 iq~l~~ei~~Lq~~i~~L~~EN~ 29 (187)
|.+|++-|-.||.+|++|..|-.
T Consensus 27 V~El~eRIalLq~EIeRlkAe~~ 49 (65)
T COG5509 27 VAELEERIALLQAEIERLKAELA 49 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45888889999999998887654
No 103
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=31.62 E-value=79 Score=21.61 Aligned_cols=23 Identities=26% Similarity=0.551 Sum_probs=18.8
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHh
Q psy13624 4 EAHITHLNNEIAKLKTQVQQVIG 26 (187)
Q Consensus 4 ea~iq~l~~ei~~Lq~~i~~L~~ 26 (187)
|.||.++-.+|..||.+-+.|..
T Consensus 18 Eqkiedid~qIaeLe~KR~~Lv~ 40 (46)
T PF08946_consen 18 EQKIEDIDEQIAELEAKRQRLVD 40 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHH
Confidence 67888999999999988777654
No 104
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=31.58 E-value=1.7e+02 Score=23.17 Aligned_cols=20 Identities=20% Similarity=0.406 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHhcc
Q psy13624 87 VRRTDQVTKRIQELAAHMRS 106 (187)
Q Consensus 87 ir~TE~vT~~IqeLl~aaq~ 106 (187)
-..|...|+.|..++..++.
T Consensus 88 A~~t~~~~~~I~~~i~~i~~ 107 (213)
T PF00015_consen 88 AEQTSESAKEISEIIEEIQE 107 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHhhhhh
Confidence 34455566666666666655
No 105
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=31.04 E-value=30 Score=22.56 Aligned_cols=29 Identities=34% Similarity=0.419 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhhcCCCCCchHHHHHHHHhh
Q psy13624 119 RIRIAVSELSAIFPQNTNNDLIRHALRSLN 148 (187)
Q Consensus 119 ~I~~AV~el~alFP~~~~~e~vr~~L~~L~ 148 (187)
-|..||..+.. .|..+..+-||.+|+.|.
T Consensus 19 e~~~av~~~~~-~~~~~~e~~ik~aLk~Ls 47 (47)
T PF07499_consen 19 EAQKAVSKLLE-KPGMDVEELIKQALKLLS 47 (47)
T ss_dssp HHHHHHHHHHH-STTS-HHHHHHHHHCCCT
T ss_pred HHHHHHHHhhc-CCCCCHHHHHHHHHhhcC
Confidence 46777777777 777778888888888763
No 106
>PF10157 DUF2365: Uncharacterized conserved protein (DUF2365); InterPro: IPR019314 This entry is found in a highly conserved family of proteins which have no known function.
Probab=31.01 E-value=2.9e+02 Score=22.73 Aligned_cols=90 Identities=24% Similarity=0.335 Sum_probs=57.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhccCCCC--CCccchHHHHHHHHHHHHhhcCCCCCchHHHHHHHHhhhhhHHHHHHhhh
Q psy13624 83 SEEVVRRTDQVTKRIQELAAHMRSSDKC--HSFVPHAERIRIAVSELSAIFPQNTNNDLIRHALRSLNTSTVRLQAECAQ 160 (187)
Q Consensus 83 ~e~Vir~TE~vT~~IqeLl~aaq~~~~~--~~fvpcae~I~~AV~el~alFP~~~~~e~vr~~L~~L~~~a~~Lq~eC~~ 160 (187)
-.+|-+.+..|..+.-.|+..++..-+. .--|.|-+--+-+|..+-. +|..+++ +++.|-+.|..
T Consensus 54 L~~LE~~a~~ia~svd~ll~~L~~~L~~mS~~Tv~~~~~y~~sv~~~cd---------svD~sik----~~y~liakceE 120 (149)
T PF10157_consen 54 LHDLERDAQAIAESVDSLLRSLRSSLHSMSAITVEHMETYKDSVDKLCD---------SVDASIK----SMYTLIAKCEE 120 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHH----HHHHHHHHHHH
Confidence 3466667777777777777777764332 3445666666666666532 2333333 25578889999
Q ss_pred hHHhHHHHHHHHHHHHHHHHHhhhhc
Q psy13624 161 LEGSAERVRSCAYNMAKANKQLLTQF 186 (187)
Q Consensus 161 ~q~~t~qv~~cAYdIAKAaK~LvT~f 186 (187)
+-..+..|...|-.| |-.|.+|-.|
T Consensus 121 Ln~~M~~v~~La~qI-K~Ik~~lD~l 145 (149)
T PF10157_consen 121 LNESMKPVYKLAQQI-KDIKKLLDLL 145 (149)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 888888877777776 5566666655
No 107
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=30.76 E-value=1.1e+02 Score=20.34 Aligned_cols=28 Identities=29% Similarity=0.367 Sum_probs=23.4
Q ss_pred HhHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy13624 8 THLNNEIAKLKTQVQQVIGENETLKAAL 35 (187)
Q Consensus 8 q~l~~ei~~Lq~~i~~L~~EN~~Lk~~~ 35 (187)
..|+++-..|+.+.+.|..|...|+..+
T Consensus 15 d~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 15 DSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4788888999999999999998887554
No 108
>KOG4514|consensus
Probab=30.10 E-value=3.8e+02 Score=23.53 Aligned_cols=95 Identities=14% Similarity=0.247 Sum_probs=59.4
Q ss_pred CCCCChh-----hHHHHHHHHHHHHHHHHHHhccCCCC--CCccchHHHHHHHHHHHHhhcCCCCCchHHHHHHHHhhhh
Q psy13624 78 TRMPQSE-----EVVRRTDQVTKRIQELAAHMRSSDKC--HSFVPHAERIRIAVSELSAIFPQNTNNDLIRHALRSLNTS 150 (187)
Q Consensus 78 ~~~P~~e-----~Vir~TE~vT~~IqeLl~aaq~~~~~--~~fvpcae~I~~AV~el~alFP~~~~~e~vr~~L~~L~~~ 150 (187)
+++|.-| |+-+.+..+.-+.-.|++.+.+.-|. +--+.|-+--|.||..+..-. +..||.
T Consensus 117 ~~ip~vDp~VL~DlE~~~~el~~~vD~llr~lgg~lh~is~lt~~~vq~yr~aV~kl~d~~-----DanIK~-------- 183 (222)
T KOG4514|consen 117 RNIPEVDPSVLSDLELEAQELASSVDNLLRNLGGLLHSISSLTADNVQVYRNAVNKLTDTL-----DANIKC-------- 183 (222)
T ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHh-----hhhhHH--------
Confidence 4455544 33344555555667777777664443 344667777788888776543 334443
Q ss_pred hHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHhhhhc
Q psy13624 151 TVRLQAECAQLEGSAERVRSCAYNMAKANKQLLTQF 186 (187)
Q Consensus 151 a~~Lq~eC~~~q~~t~qv~~cAYdIAKAaK~LvT~f 186 (187)
.+.|.++|+.+..+++-|.+.|-+| |-.|-||..|
T Consensus 184 ~Y~lLAk~EEi~ksm~pv~~La~qi-r~irRlve~l 218 (222)
T KOG4514|consen 184 QYQLLAKAEEITKSMKPVEQLAQQI-RQIRRLVEML 218 (222)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHHHH
Confidence 4567789999988887787777776 4455555443
No 109
>PF12097 DUF3573: Protein of unknown function (DUF3573); InterPro: IPR021956 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 372 to 530 amino acids in length.
Probab=29.83 E-value=63 Score=30.53 Aligned_cols=26 Identities=31% Similarity=0.417 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy13624 9 HLNNEIAKLKTQVQQVIGENETLKAA 34 (187)
Q Consensus 9 ~l~~ei~~Lq~~i~~L~~EN~~Lk~~ 34 (187)
..+++|-.||.+|++|+.|..+|+.+
T Consensus 39 ~~~~~i~~Lq~QI~~Lq~ei~~l~~~ 64 (383)
T PF12097_consen 39 NDQQEISELQKQIQQLQAEINQLEEQ 64 (383)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667888888888888888888865
No 110
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=29.44 E-value=50 Score=23.63 Aligned_cols=27 Identities=26% Similarity=0.348 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHhh
Q psy13624 11 NNEIAKLKTQVQQVIGENETLKAALNA 37 (187)
Q Consensus 11 ~~ei~~Lq~~i~~L~~EN~~Lk~~~~~ 37 (187)
.+|+.-|+..|..|...|++|+...+-
T Consensus 13 rEEVevLK~~I~eL~~~n~~Le~EN~~ 39 (59)
T PF01166_consen 13 REEVEVLKEQIAELEERNSQLEEENNL 39 (59)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568899999999999999999965544
No 111
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=29.01 E-value=1.1e+02 Score=22.06 Aligned_cols=23 Identities=26% Similarity=0.173 Sum_probs=10.8
Q ss_pred HhHHHHHHHHHHHHHHHHhhhHH
Q psy13624 8 THLNNEIAKLKTQVQQVIGENET 30 (187)
Q Consensus 8 q~l~~ei~~Lq~~i~~L~~EN~~ 30 (187)
.+.-.++..|+.+++.|.+|+..
T Consensus 43 ~~a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 43 GDAYEENNKLKEENEALRKELEE 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555544433
No 112
>PF03285 Paralemmin: Paralemmin; InterPro: IPR004965 Paralemmin was identified in the chicken lens as a protein with a molecular weight of 65 kDa (isoform 1) and a splice variant of 60 kDa (isoform 2). Isoform 2 is predominant during infancy and levels of isoform 1 increase with age. Paralemmin is localised to the plasma membrane of fibre cells, and was not detected in the annular pad cells. Its localisation to the short side of the fibre cell and the sites of fibre cell interlocking suggests that paralemmin may play a role in the development of such interdigitating processes []. Palmitoylation is important for localising these proteins to the filopodia of dendritic cells where they have been implicated in the regulation of membrane dynamics and process outgrowth. ; GO: 0008360 regulation of cell shape, 0016020 membrane
Probab=28.78 E-value=56 Score=29.60 Aligned_cols=27 Identities=15% Similarity=0.326 Sum_probs=22.5
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHhhhHH
Q psy13624 4 EAHITHLNNEIAKLKTQVQQVIGENET 30 (187)
Q Consensus 4 ea~iq~l~~ei~~Lq~~i~~L~~EN~~ 30 (187)
|+|...|.+.|++|.++|+.|.++-++
T Consensus 9 EqKtR~LEesI~RLEkEIe~LE~~es~ 35 (278)
T PF03285_consen 9 EQKTRSLEESIHRLEKEIEALENGESQ 35 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 677889999999999999999876554
No 113
>PF13890 Rab3-GTPase_cat: Rab3 GTPase-activating protein catalytic subunit
Probab=28.69 E-value=72 Score=26.79 Aligned_cols=32 Identities=9% Similarity=0.168 Sum_probs=24.1
Q ss_pred ccccccCCC--CCCCCCCCChhhHHHHHHHHHHH
Q psy13624 65 SMYNVTVNA--QSTTTRMPQSEEVVRRTDQVTKR 96 (187)
Q Consensus 65 SMye~~~~~--~~t~~~~P~~e~Vir~TE~vT~~ 96 (187)
-+.++|+-+ |.||+..|-+||+++.-+++-..
T Consensus 21 ~Ll~~gepl~~P~tQ~~~p~TeD~l~e~~e~l~~ 54 (164)
T PF13890_consen 21 RLLETGEPLYIPITQEPPPMTEDMLEEQEEELLK 54 (164)
T ss_pred eeeCCCCEeecCCCCCCCCCcHHHHHHHHHHHHh
Confidence 455666554 88999999999999887765443
No 114
>PHA00728 hypothetical protein
Probab=28.49 E-value=49 Score=27.21 Aligned_cols=18 Identities=50% Similarity=0.586 Sum_probs=13.9
Q ss_pred HHHHHHHhhhHHHHHHHh
Q psy13624 19 TQVQQVIGENETLKAALN 36 (187)
Q Consensus 19 ~~i~~L~~EN~~Lk~~~~ 36 (187)
++|++|.+||.+||..+.
T Consensus 5 teveql~keneelkkkla 22 (151)
T PHA00728 5 TEVEQLKKENEELKKKLA 22 (151)
T ss_pred hHHHHHHHhHHHHHHHHH
Confidence 568888888988887543
No 115
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=28.32 E-value=1.7e+02 Score=20.65 Aligned_cols=28 Identities=18% Similarity=0.401 Sum_probs=18.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhhhHHHH
Q psy13624 5 AHITHLNNEIAKLKTQVQQVIGENETLK 32 (187)
Q Consensus 5 a~iq~l~~ei~~Lq~~i~~L~~EN~~Lk 32 (187)
+.|+.|+..+.+|...|..|..+....|
T Consensus 10 ~dVq~L~~kvdqLs~dv~~lr~~v~~ak 37 (56)
T PF04728_consen 10 SDVQTLNSKVDQLSSDVNALRADVQAAK 37 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466677777777777766666665555
No 116
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=28.22 E-value=1.3e+02 Score=20.51 Aligned_cols=27 Identities=26% Similarity=0.348 Sum_probs=22.0
Q ss_pred HHhHHHHHHHHHHHHHHHHhhhHHHHH
Q psy13624 7 ITHLNNEIAKLKTQVQQVIGENETLKA 33 (187)
Q Consensus 7 iq~l~~ei~~Lq~~i~~L~~EN~~Lk~ 33 (187)
|..|+.++..|+.+|+.|+.--++-|.
T Consensus 1 i~aLrqQv~aL~~qv~~Lq~~fs~yKK 27 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQAAFSQYKK 27 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356888888899999999888888774
No 117
>PF14645 Chibby: Chibby family
Probab=28.19 E-value=68 Score=25.21 Aligned_cols=22 Identities=36% Similarity=0.437 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHhhhHHHH
Q psy13624 11 NNEIAKLKTQVQQVIGENETLK 32 (187)
Q Consensus 11 ~~ei~~Lq~~i~~L~~EN~~Lk 32 (187)
..+..+|+++.++|+.||+-||
T Consensus 70 ~~~~~~l~~~n~~L~EENN~Lk 91 (116)
T PF14645_consen 70 GEENQRLRKENQQLEEENNLLK 91 (116)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 3455677788888888888887
No 118
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=28.13 E-value=68 Score=30.37 Aligned_cols=21 Identities=19% Similarity=0.390 Sum_probs=13.8
Q ss_pred HhhcCCCCCchHHHHHHHHhh
Q psy13624 128 SAIFPQNTNNDLIRHALRSLN 148 (187)
Q Consensus 128 ~alFP~~~~~e~vr~~L~~L~ 148 (187)
-+.||..-..+.+...++.-+
T Consensus 133 g~Yf~D~v~~~~L~~yv~t~~ 153 (420)
T PF07407_consen 133 GRYFNDAVDNEVLYKYVRTNN 153 (420)
T ss_pred hhhcCccchhHHHHHHHHhcc
Confidence 356876667777777776544
No 119
>KOG4343|consensus
Probab=27.81 E-value=82 Score=31.55 Aligned_cols=29 Identities=31% Similarity=0.394 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHhh
Q psy13624 9 HLNNEIAKLKTQVQQVIGENETLKAALNA 37 (187)
Q Consensus 9 ~l~~ei~~Lq~~i~~L~~EN~~Lk~~~~~ 37 (187)
.|+.-|+.|-.+-++|..||..||+++.-
T Consensus 306 ~Le~rLq~ll~Ene~Lk~ENatLk~qL~~ 334 (655)
T KOG4343|consen 306 GLEARLQALLSENEQLKKENATLKRQLDE 334 (655)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 67778888888888999999999988866
No 120
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=27.71 E-value=57 Score=31.78 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHH
Q psy13624 12 NEIAKLKTQVQQVIGENETLKAAL 35 (187)
Q Consensus 12 ~ei~~Lq~~i~~L~~EN~~Lk~~~ 35 (187)
+++..|| +|++|++|..+||.++
T Consensus 25 ~~~~~~q-kie~L~kql~~Lk~q~ 47 (489)
T PF11853_consen 25 DDIDLLQ-KIEALKKQLEELKAQQ 47 (489)
T ss_pred hhhHHHH-HHHHHHHHHHHHHHhh
Confidence 3444444 5555555555555443
No 121
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.35 E-value=81 Score=28.31 Aligned_cols=26 Identities=19% Similarity=0.524 Sum_probs=19.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhhHHHH
Q psy13624 6 HITHLNNEIAKLKTQVQQVIGENETLK 32 (187)
Q Consensus 6 ~iq~l~~ei~~Lq~~i~~L~~EN~~Lk 32 (187)
.+.+|.++|+.|+-+|++|.. +..+.
T Consensus 57 ~~~~l~~Ql~~l~g~i~~L~~-~~~~q 82 (262)
T COG1729 57 RLTQLEQQLRQLQGKIEELRG-IQELQ 82 (262)
T ss_pred ccHHHHHHHHHHHhhHHHHHh-HHHHH
Confidence 456899999999999998885 44443
No 122
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=27.15 E-value=3.2e+02 Score=25.28 Aligned_cols=69 Identities=17% Similarity=0.376 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCCChhhHHH
Q psy13624 9 HLNNEIAKLKTQVQQVIGENETLKAALNARNSATHHQPPETEPVSDSSWCSPQRPASMYNVTVNAQSTTTRMPQSEEVVR 88 (187)
Q Consensus 9 ~l~~ei~~Lq~~i~~L~~EN~~Lk~~~~~~~~~~~~~~~~~~p~~~~~~~~~~Rp~SMye~~~~~~~t~~~~P~~e~Vir 88 (187)
.|..|+..|+..+..++.+|--||..+........+.+ .|++. =--++.|.
T Consensus 83 ~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~--------------~~~~~---------------~ere~lV~ 133 (319)
T PF09789_consen 83 KLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIG--------------ARHFP---------------HEREDLVE 133 (319)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhcccc--------------ccccc---------------hHHHHHHH
Confidence 67778888888888888888888866644221111100 11111 11467777
Q ss_pred HHHHHHHHHHHHHHHhcc
Q psy13624 89 RTDQVTKRIQELAAHMRS 106 (187)
Q Consensus 89 ~TE~vT~~IqeLl~aaq~ 106 (187)
.-|.+...|.+|-.+.|.
T Consensus 134 qLEk~~~q~~qLe~d~qs 151 (319)
T PF09789_consen 134 QLEKLREQIEQLERDLQS 151 (319)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 788888888877776664
No 123
>KOG1937|consensus
Probab=27.14 E-value=6.2e+02 Score=25.03 Aligned_cols=113 Identities=16% Similarity=0.258 Sum_probs=68.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCCChh
Q psy13624 5 AHITHLNNEIAKLKTQVQQVIGENETLKAALNARNSATHHQPPETEPVSDSSWCSPQRPASMYNVTVNAQSTTTRMPQSE 84 (187)
Q Consensus 5 a~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~~~~~~~~~~~~~~~~p~~~~~~~~~~Rp~SMye~~~~~~~t~~~~P~~e 84 (187)
.+||+|...+.-+-.+|++-..++.+|++.+..-+ +.++||
T Consensus 345 ~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp----------------------~dv~rk----------------- 385 (521)
T KOG1937|consen 345 RRIQELEQDLEAVDEEIESNEELAEKLRSELEKLP----------------------DDVQRK----------------- 385 (521)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCC----------------------chhHHH-----------------
Confidence 57777877777777788888888888886664332 112222
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCC-------CCCCccchHHHHHHHHHHHHhhcCCCCCchHHHHHHHHhhhhhHHHHHH
Q psy13624 85 EVVRRTDQVTKRIQELAAHMRSSD-------KCHSFVPHAERIRIAVSELSAIFPQNTNNDLIRHALRSLNTSTVRLQAE 157 (187)
Q Consensus 85 ~Vir~TE~vT~~IqeLl~aaq~~~-------~~~~fvpcae~I~~AV~el~alFP~~~~~e~vr~~L~~L~~~a~~Lq~e 157 (187)
..++|...|+.+|+-+=.+|+.-. ...-.+.-+-.=-.||++ -=+|-.--+.+.||-+.+.|+ +|..-
T Consensus 386 ~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se~L~Rsfavtd-ellf~sakhddhvR~aykllt----~iH~n 460 (521)
T KOG1937|consen 386 VYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESEALNRSFAVTD-ELLFMSAKHDDHVRLAYKLLT----RIHLN 460 (521)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHhccCHHHHHHHHHHH----HHHHH
Confidence 334445555566555555444300 001122222222346666 235666668999999999999 89999
Q ss_pred hhhh
Q psy13624 158 CAQL 161 (187)
Q Consensus 158 C~~~ 161 (187)
|..+
T Consensus 461 c~ei 464 (521)
T KOG1937|consen 461 CMEI 464 (521)
T ss_pred HHHH
Confidence 9766
No 124
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=27.13 E-value=67 Score=28.50 Aligned_cols=20 Identities=25% Similarity=0.720 Sum_probs=13.3
Q ss_pred HHHhHHHHHHHHHHHHHHHH
Q psy13624 6 HITHLNNEIAKLKTQVQQVI 25 (187)
Q Consensus 6 ~iq~l~~ei~~Lq~~i~~L~ 25 (187)
||..|++||..|+.+|.++-
T Consensus 123 KIsALEdELs~LRaQIA~IV 142 (253)
T PF05308_consen 123 KISALEDELSRLRAQIAKIV 142 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55567777777777766654
No 125
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=27.12 E-value=4.1e+02 Score=26.58 Aligned_cols=26 Identities=15% Similarity=0.384 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhccCCC-----CCCccchHHH
Q psy13624 94 TKRIQELAAHMRSSDK-----CHSFVPHAER 119 (187)
Q Consensus 94 T~~IqeLl~aaq~~~~-----~~~fvpcae~ 119 (187)
++.|-+||.-||++.. ...|+||-||
T Consensus 575 AqqImqLL~eiQnpq~~p~L~~~pcipffy~ 605 (617)
T PF15070_consen 575 AQQIMQLLQEIQNPQEHPGLGSNPCIPFFYR 605 (617)
T ss_pred HHHHHHHhHhcCCcccCCCCCCCCcccceee
Confidence 7899999999998542 2466676543
No 126
>PF12205 GIT1_C: G protein-coupled receptor kinase-interacting protein 1 C term; InterPro: IPR022018 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF01412 from PFAM, PF00023 from PFAM, PF08518 from PFAM. GIT1 plays an important role in cell adhesion, motility, cytoskeletal remodeling and membrane trafficking. To perform this function, it localises p21-activated kinase (PAK) and PAK-interactive exchange factor to focal adhesions. Its activation is regulated by interaction between its paxillin-binding C-terminal and the LD motifs of paxillin. The C-terminal folds into a four helix bundle. ; PDB: 2JX0_A.
Probab=27.04 E-value=2.9e+02 Score=22.12 Aligned_cols=22 Identities=18% Similarity=0.375 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhc
Q psy13624 165 AERVRSCAYNMAKANKQLLTQF 186 (187)
Q Consensus 165 t~qv~~cAYdIAKAaK~LvT~f 186 (187)
.+....||+.|.-|-..|++.|
T Consensus 37 ~~s~~pcae~I~~aV~~m~~Lf 58 (123)
T PF12205_consen 37 HDSFAPCAERIRSAVTEMAALF 58 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTS
T ss_pred cccchhHHHHHHHHHHHHHHhC
Confidence 3344455555555555555555
No 127
>PF15058 Speriolin_N: Speriolin N terminus
Probab=26.82 E-value=2.6e+02 Score=24.47 Aligned_cols=63 Identities=27% Similarity=0.322 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhhHHHHHHHhhcCCC-----------CCCCCCCCCC-CCCCCCCCCCCCcccccc
Q psy13624 6 HITHLNNEIAKLKTQVQQVIGENETLKAALNARNSA-----------THHQPPETEP-VSDSSWCSPQRPASMYNV 69 (187)
Q Consensus 6 ~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~~~~~~~-----------~~~~~~~~~p-~~~~~~~~~~Rp~SMye~ 69 (187)
+|..|=.|..+||+.| +|..||-.||+-++....+ +..+-...|| ..+.+...=.+-.+|.+.
T Consensus 13 qierLv~ENeeLKKlV-rLirEN~eLksaL~ea~~~~~~r~~~~vf~pp~pA~a~Ep~~~~~Gi~~lapla~~l~s 87 (200)
T PF15058_consen 13 QIERLVRENEELKKLV-RLIRENHELKSALGEACAEPSQRQGNDVFLPPSPAYANEPCLPEVGIVALAPLADMLDS 87 (200)
T ss_pred HHHHHHhhhHHHHHHH-HHHHHHHHHHHHHHHhhcccccccCCceecCCCCCCCCCCCCCccccccccccccCCCC
No 128
>COG4694 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.81 E-value=92 Score=31.58 Aligned_cols=34 Identities=24% Similarity=0.303 Sum_probs=30.5
Q ss_pred chhHHHHhHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy13624 2 ISEAHITHLNNEIAKLKTQVQQVIGENETLKAAL 35 (187)
Q Consensus 2 ~Sea~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~ 35 (187)
.+|+++.+|..|+.++|.+|.+|..|...+..-+
T Consensus 449 g~ekk~n~LE~e~kn~~~ev~kls~ei~~ie~~l 482 (758)
T COG4694 449 GLEKKINNLEKEIKNNQEEVKKLSNEIKEIEKFL 482 (758)
T ss_pred HHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3789999999999999999999999999988544
No 129
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=26.81 E-value=1.5e+02 Score=23.95 Aligned_cols=34 Identities=15% Similarity=0.216 Sum_probs=27.3
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHhhhHHHHHHHhh
Q psy13624 4 EAHITHLNNEIAKLKTQVQQVIGENETLKAALNA 37 (187)
Q Consensus 4 ea~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~~~ 37 (187)
|.+|-..-+.|+.||..+..+.++-..|+..++.
T Consensus 96 e~~i~~~~~~I~~Lq~~~~~~~~ki~~Le~~i~~ 129 (146)
T PF08702_consen 96 ETKIINQPSNIRVLQNILRSNRQKIQRLEQDIDQ 129 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677788899999999999999999976655
No 130
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=26.80 E-value=1.2e+02 Score=22.66 Aligned_cols=27 Identities=15% Similarity=0.350 Sum_probs=13.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhhHHHH
Q psy13624 6 HITHLNNEIAKLKTQVQQVIGENETLK 32 (187)
Q Consensus 6 ~iq~l~~ei~~Lq~~i~~L~~EN~~Lk 32 (187)
.++.|..+|+.|+..+.+|...-..++
T Consensus 7 ~~~~l~~~i~~l~~~~~~l~~~~~e~~ 33 (129)
T cd00890 7 QLQQLQQQLEALQQQLQKLEAQLTEYE 33 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666555555544444443
No 131
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=25.59 E-value=1.7e+02 Score=21.02 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=10.1
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHH
Q psy13624 9 HLNNEIAKLKTQVQQVIGENETLK 32 (187)
Q Consensus 9 ~l~~ei~~Lq~~i~~L~~EN~~Lk 32 (187)
++..+|..|+..++.+..+...|+
T Consensus 44 e~e~~~~~l~~~~~~~e~~~~~l~ 67 (74)
T PF12329_consen 44 ELEKQIKELKKKLEELEKELESLE 67 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444443
No 132
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=25.38 E-value=4.6e+02 Score=26.13 Aligned_cols=18 Identities=28% Similarity=0.357 Sum_probs=13.0
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHH
Q psy13624 79 RMPQSEEVVRRTDQVTKRIQELAAH 103 (187)
Q Consensus 79 ~~P~~e~Vir~TE~vT~~IqeLl~a 103 (187)
-.|++++. .+++.+||..
T Consensus 458 YVP~~~~~-------~~rLs~LWE~ 475 (557)
T PF01763_consen 458 YVPPYRED-------EKRLSRLWEQ 475 (557)
T ss_pred cCCCchHH-------HHHHHHHHHH
Confidence 36777777 6778888864
No 133
>KOG2264|consensus
Probab=25.16 E-value=1.1e+02 Score=31.22 Aligned_cols=30 Identities=30% Similarity=0.398 Sum_probs=19.6
Q ss_pred hhHHHHhHHHHHHHHHHHHHHHH-------hhhHHHH
Q psy13624 3 SEAHITHLNNEIAKLKTQVQQVI-------GENETLK 32 (187)
Q Consensus 3 Sea~iq~l~~ei~~Lq~~i~~L~-------~EN~~Lk 32 (187)
+|+|-|+|.+||.++..+|+.|+ .|-+.||
T Consensus 98 le~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk 134 (907)
T KOG2264|consen 98 LEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALK 134 (907)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 57787777777776666665554 4455555
No 134
>KOG2483|consensus
Probab=25.09 E-value=1.2e+02 Score=26.77 Aligned_cols=32 Identities=31% Similarity=0.459 Sum_probs=28.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhhHHHHHHHhh
Q psy13624 6 HITHLNNEIAKLKTQVQQVIGENETLKAALNA 37 (187)
Q Consensus 6 ~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~~~ 37 (187)
.|+.|....+..+..|++|..||..|+.++..
T Consensus 106 ~i~~l~~~~~~~~~~~e~l~~e~~~l~~rl~q 137 (232)
T KOG2483|consen 106 HIQSLERKSATQQQDIEDLSRENRKLKARLEQ 137 (232)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47789999999999999999999999988865
No 135
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=24.90 E-value=1.6e+02 Score=22.30 Aligned_cols=27 Identities=19% Similarity=0.271 Sum_probs=18.7
Q ss_pred HHhHHHHHHHHHHHHHHHHhhhHHHHH
Q psy13624 7 ITHLNNEIAKLKTQVQQVIGENETLKA 33 (187)
Q Consensus 7 iq~l~~ei~~Lq~~i~~L~~EN~~Lk~ 33 (187)
+..++.++..|+++.++|+.|-..-..
T Consensus 25 ~~ka~~~~~kL~~en~qlk~Ek~~~~~ 51 (87)
T PF10883_consen 25 VKKAKKQNAKLQKENEQLKTEKAVAET 51 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446777788888888888777555443
No 136
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=24.69 E-value=1.4e+02 Score=23.93 Aligned_cols=28 Identities=25% Similarity=0.424 Sum_probs=18.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhhhHHHH
Q psy13624 5 AHITHLNNEIAKLKTQVQQVIGENETLK 32 (187)
Q Consensus 5 a~iq~l~~ei~~Lq~~i~~L~~EN~~Lk 32 (187)
.+|-.+..||--|+.++..|-.||..|+
T Consensus 15 ~~l~~l~~el~~lK~~l~~lvEEN~~L~ 42 (114)
T COG4467 15 EQLGVLLAELGGLKQHLGSLVEENTALR 42 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3445666777777777777766666554
No 137
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=24.64 E-value=1.7e+02 Score=23.03 Aligned_cols=24 Identities=21% Similarity=0.562 Sum_probs=10.5
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHH
Q psy13624 9 HLNNEIAKLKTQVQQVIGENETLK 32 (187)
Q Consensus 9 ~l~~ei~~Lq~~i~~L~~EN~~Lk 32 (187)
+|.++++.+...+..|+..+..|+
T Consensus 56 ~l~~~~~~l~~d~~~l~~~~~rL~ 79 (151)
T PF11559_consen 56 DLSDKLRRLRSDIERLQNDVERLK 79 (151)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344444444444444444444444
No 138
>cd07909 YciF YciF bacterial stress response protein, ferritin-like iron-binding domain. YciF is a bacterial protein of unknown function that is up-regulated when bacteria experience stress conditions, and is highly conserved in a broad range of bacterial species. YciF has a ferritin-like domain. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=24.62 E-value=1.3e+02 Score=24.38 Aligned_cols=68 Identities=22% Similarity=0.254 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHhccCCCCCCccchHHHHHHHHHHHHhhcCCCC-CchHHH-HHHHHhhhhhHHHHHHh
Q psy13624 91 DQVTKRIQELAAHMRSSDKCHSFVPHAERIRIAVSELSAIFPQNT-NNDLIR-HALRSLNTSTVRLQAEC 158 (187)
Q Consensus 91 E~vT~~IqeLl~aaq~~~~~~~fvpcae~I~~AV~el~alFP~~~-~~e~vr-~~L~~L~~~a~~Lq~eC 158 (187)
.|+.+.+..+..++.++..++.|..|.+-++.=|.+|-.+|=... .+..++ .++..|...+..+-.++
T Consensus 16 ~Q~~~al~~m~~~a~~peLk~~l~~H~~eT~~qi~rLe~if~~lg~~~~~~~c~~m~gli~e~~~~~~~~ 85 (147)
T cd07909 16 KQLVKALPKMAKAATSEELKEAFESHLEETEGQVERLEQIFESLGEKPEGKKCKAMEGLIKEAEELIEET 85 (147)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCcchHHHHHHHHHHHHHhcc
Confidence 567777888888888877778888888888888888888885332 334444 45555555555555555
No 139
>PF04458 DUF505: Protein of unknown function (DUF505); InterPro: IPR007548 This is a family of uncharacterised prokaryotic proteins.
Probab=24.56 E-value=1.7e+02 Score=29.36 Aligned_cols=57 Identities=14% Similarity=0.190 Sum_probs=43.0
Q ss_pred CCccchHHHHHHHHHHHHhhcCCCC----CchHHHHHHHHhhhhhHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHh
Q psy13624 111 HSFVPHAERIRIAVSELSAIFPQNT----NNDLIRHALRSLNTSTVRLQAECAQLEGSAERVRSCAYNMAKANKQL 182 (187)
Q Consensus 111 ~~fvpcae~I~~AV~el~alFP~~~----~~e~vr~~L~~L~~~a~~Lq~eC~~~q~~t~qv~~cAYdIAKAaK~L 182 (187)
...-|...||-.|+-+.-.+|++.. .+++++.+++.++ .+.+.+.-|+.+|+++|.+
T Consensus 514 ~PVtP~~~rVL~Ai~~~g~lyvKe~KvRi~pk~~ke~~K~sg---------------L~~e~f~kaL~~aR~~~~i 574 (591)
T PF04458_consen 514 FPVTPTIYRVLKAIREVGTLYVKEKKVRILPKNIKEAIKLSG---------------LTPEEFKKALEVAREAGFI 574 (591)
T ss_pred CCCCHHHHHHHHHHHHhhhhhhhhhhhhcCccchHHHHHhcC---------------CCHHHHHHHHHHHHHhccc
Confidence 4556888888888888888887765 5556666554444 4788899999999999865
No 140
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=24.46 E-value=1.5e+02 Score=22.65 Aligned_cols=27 Identities=19% Similarity=0.352 Sum_probs=11.3
Q ss_pred HHHhHHHHHHHH--HHHHHHHHhhhHHHH
Q psy13624 6 HITHLNNEIAKL--KTQVQQVIGENETLK 32 (187)
Q Consensus 6 ~iq~l~~ei~~L--q~~i~~L~~EN~~Lk 32 (187)
+++.++.++..| +..++.|+-+-.+++
T Consensus 50 Rl~~lE~~l~~LPt~~dv~~L~l~l~el~ 78 (106)
T PF10805_consen 50 RLQALETKLEHLPTRDDVHDLQLELAELR 78 (106)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 444444444444 333444444444433
No 141
>PRK04330 hypothetical protein; Provisional
Probab=24.33 E-value=2.6e+02 Score=21.38 Aligned_cols=31 Identities=29% Similarity=0.377 Sum_probs=23.9
Q ss_pred CCccchHHHHHHHHHHHHhhcCCCCCchHHHHH
Q psy13624 111 HSFVPHAERIRIAVSELSAIFPQNTNNDLIRHA 143 (187)
Q Consensus 111 ~~fvpcae~I~~AV~el~alFP~~~~~e~vr~~ 143 (187)
+.-|| .+||.|.++.....=++..+..||++
T Consensus 24 D~sVP--RNIRraa~ea~~~L~~e~~~~~vRaA 54 (88)
T PRK04330 24 DTSVP--RNIRRAATEAKEILLNEEESPGVRAA 54 (88)
T ss_pred CCCCC--hHHHHHHHHHHHHHhCcCcchhHHHH
Confidence 35556 68999999999988777777777764
No 142
>PF10198 Ada3: Histone acetyltransferases subunit 3; InterPro: IPR019340 This entry is found in Ada3 and homologous proteins which function as part of histone acetyltransferase complexes []. Ada3 is an essential component of the Ada transcriptional coactivator (alteration/deficiency in activation) complex. It plays a key role in linking histone acetyltransferase-containing complexes to p53 (tumour suppressor protein) thereby regulating p53 acetylation, stability and transcriptional activation following DNA damage [].
Probab=23.99 E-value=1.3e+02 Score=24.04 Aligned_cols=29 Identities=17% Similarity=0.330 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHhh
Q psy13624 9 HLNNEIAKLKTQVQQVIGENETLKAALNA 37 (187)
Q Consensus 9 ~l~~ei~~Lq~~i~~L~~EN~~Lk~~~~~ 37 (187)
+...||+.||.++......|..-|..+-.
T Consensus 37 EI~aeLR~lQ~eLr~~~~~N~~rk~rL~~ 65 (131)
T PF10198_consen 37 EISAELRRLQAELREQSAHNNARKKRLLK 65 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77899999999999999999999876643
No 143
>PRK14127 cell division protein GpsB; Provisional
Probab=23.92 E-value=1.7e+02 Score=23.02 Aligned_cols=25 Identities=16% Similarity=0.327 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHH
Q psy13624 10 LNNEIAKLKTQVQQVIGENETLKAA 34 (187)
Q Consensus 10 l~~ei~~Lq~~i~~L~~EN~~Lk~~ 34 (187)
|..|+..|+.++..|..+..+++.+
T Consensus 42 l~~e~~~Lk~e~~~l~~~l~e~~~~ 66 (109)
T PRK14127 42 FQKEIEELQQENARLKAQVDELTKQ 66 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444444444433
No 144
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=23.37 E-value=2e+02 Score=21.46 Aligned_cols=31 Identities=13% Similarity=0.272 Sum_probs=21.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy13624 5 AHITHLNNEIAKLKTQVQQVIGENETLKAAL 35 (187)
Q Consensus 5 a~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~ 35 (187)
.++..+..+|..|...++.+.++-..++..+
T Consensus 70 ~~~e~le~~i~~l~~~~~~l~~~~~elk~~l 100 (105)
T cd00632 70 ERLETIELRIKRLERQEEDLQEKLKELQEKI 100 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677777777777777777777777654
No 145
>PRK01203 prefoldin subunit alpha; Provisional
Probab=23.06 E-value=1.4e+02 Score=24.10 Aligned_cols=19 Identities=11% Similarity=0.455 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHhcc
Q psy13624 88 RRTDQVTKRIQELAAHMRS 106 (187)
Q Consensus 88 r~TE~vT~~IqeLl~aaq~ 106 (187)
++.+.+.++|.+|-...+.
T Consensus 87 ~kie~L~~~ie~Le~~i~~ 105 (130)
T PRK01203 87 RTIERLKENLEDLKDSIQK 105 (130)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3888899999988888776
No 146
>KOG0971|consensus
Probab=22.94 E-value=5.7e+02 Score=27.67 Aligned_cols=29 Identities=24% Similarity=0.446 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHhh
Q psy13624 9 HLNNEIAKLKTQVQQVIGENETLKAALNA 37 (187)
Q Consensus 9 ~l~~ei~~Lq~~i~~L~~EN~~Lk~~~~~ 37 (187)
++.+..+-||..|.+|.+||..||++++.
T Consensus 1023 efeetmdaLq~di~~lEsek~elKqrl~~ 1051 (1243)
T KOG0971|consen 1023 EFEETMDALQADIDQLESEKAELKQRLNS 1051 (1243)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhh
Confidence 67778889999999999999999998865
No 147
>PRK14127 cell division protein GpsB; Provisional
Probab=22.74 E-value=1.7e+02 Score=22.90 Aligned_cols=30 Identities=17% Similarity=0.369 Sum_probs=24.3
Q ss_pred HhHHHHHHHHHHHHHHHHhhhHHHHHHHhh
Q psy13624 8 THLNNEIAKLKTQVQQVIGENETLKAALNA 37 (187)
Q Consensus 8 q~l~~ei~~Lq~~i~~L~~EN~~Lk~~~~~ 37 (187)
++...++..|..++..|+.||..|+..+..
T Consensus 33 d~V~~dye~l~~e~~~Lk~e~~~l~~~l~e 62 (109)
T PRK14127 33 DDVIKDYEAFQKEIEELQQENARLKAQVDE 62 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677788889999999999999987755
No 148
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=22.52 E-value=1.4e+02 Score=29.17 Aligned_cols=20 Identities=20% Similarity=0.318 Sum_probs=8.5
Q ss_pred HHHHhHHHHHHHHHHHHHHH
Q psy13624 5 AHITHLNNEIAKLKTQVQQV 24 (187)
Q Consensus 5 a~iq~l~~ei~~Lq~~i~~L 24 (187)
.+++.|..+.+.|+.+.++|
T Consensus 73 ~~~~~l~~~N~~l~~eN~~L 92 (472)
T TIGR03752 73 KRLAKLISENEALKAENERL 92 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444
No 149
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=22.52 E-value=1.4e+02 Score=25.78 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=20.0
Q ss_pred HhHHHHHHHHHHHHHHHHhhhHHHH
Q psy13624 8 THLNNEIAKLKTQVQQVIGENETLK 32 (187)
Q Consensus 8 q~l~~ei~~Lq~~i~~L~~EN~~Lk 32 (187)
.++.+|+.+|++++.+|..++.+++
T Consensus 72 ~~l~~en~~L~~e~~~l~~~~~~~~ 96 (276)
T PRK13922 72 FDLREENEELKKELLELESRLQELE 96 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788888888888888888888654
No 150
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=22.42 E-value=2.4e+02 Score=20.87 Aligned_cols=31 Identities=16% Similarity=0.294 Sum_probs=22.6
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy13624 4 EAHITHLNNEIAKLKTQVQQVIGENETLKAA 34 (187)
Q Consensus 4 ea~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~ 34 (187)
|.+|+....|+..++..|-.|......+|+.
T Consensus 31 e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~ 61 (79)
T PF08581_consen 31 EHKINSQIQEMQQIRQKVYELEQAHRKMKQQ 61 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567777788888888887777766666643
No 151
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=22.38 E-value=3.9e+02 Score=21.01 Aligned_cols=26 Identities=12% Similarity=0.217 Sum_probs=14.5
Q ss_pred hHHHHHHHHhhhhhHHHHHHhhhhHH
Q psy13624 138 DLIRHALRSLNTSTVRLQAECAQLEG 163 (187)
Q Consensus 138 e~vr~~L~~L~~~a~~Lq~eC~~~q~ 163 (187)
+.+...+..+..++..+......+..
T Consensus 145 ~~i~~~i~~i~~~~~~~~~~~~~i~~ 170 (213)
T PF00015_consen 145 EEISDSIEEISESAEEQSESIEQINE 170 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhhhhHHHHhhHHHHHHHHHHHHH
Confidence 45555666666666655555555433
No 152
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=22.28 E-value=1.9e+02 Score=21.36 Aligned_cols=31 Identities=23% Similarity=0.442 Sum_probs=20.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy13624 5 AHITHLNNEIAKLKTQVQQVIGENETLKAAL 35 (187)
Q Consensus 5 a~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~ 35 (187)
.++..|++.+..|+..+..++.+-..+...+
T Consensus 84 ~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l 114 (120)
T PF02996_consen 84 KRIKELEEQLEKLEKELAELQAQIEQLEQTL 114 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777666665443
No 153
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.09 E-value=1.6e+02 Score=26.60 Aligned_cols=14 Identities=36% Similarity=0.624 Sum_probs=7.3
Q ss_pred hhHHHHHHHHHHHH
Q psy13624 84 EEVVRRTDQVTKRI 97 (187)
Q Consensus 84 e~Vir~TE~vT~~I 97 (187)
+++..|.+.+-+|.
T Consensus 94 ~~I~~r~~~l~~ra 107 (265)
T COG3883 94 ENIVERQELLKKRA 107 (265)
T ss_pred HHHHHHHHHHHHHH
Confidence 44555555555553
No 154
>PF14282 FlxA: FlxA-like protein
Probab=22.05 E-value=1.6e+02 Score=22.46 Aligned_cols=27 Identities=22% Similarity=0.391 Sum_probs=16.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhhHHHH
Q psy13624 6 HITHLNNEIAKLKTQVQQVIGENETLK 32 (187)
Q Consensus 6 ~iq~l~~ei~~Lq~~i~~L~~EN~~Lk 32 (187)
+++.|..+|..|+..|.+|+.+-.+-.
T Consensus 52 q~q~Lq~QI~~LqaQI~qlq~q~~~~~ 78 (106)
T PF14282_consen 52 QIQLLQAQIQQLQAQIAQLQSQQAEQQ 78 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444666666666666666666655544
No 155
>PF14818 DUF4482: Domain of unknown function (DUF4482)
Probab=22.03 E-value=1.2e+02 Score=25.10 Aligned_cols=25 Identities=8% Similarity=0.230 Sum_probs=21.9
Q ss_pred HhHHHHHHHHHHHHHHHHhhhHHHH
Q psy13624 8 THLNNEIAKLKTQVQQVIGENETLK 32 (187)
Q Consensus 8 q~l~~ei~~Lq~~i~~L~~EN~~Lk 32 (187)
++-..+.+.||++|++|++|++--+
T Consensus 30 ~eWE~Q~kemq~kieql~~e~~~~r 54 (141)
T PF14818_consen 30 QEWEQQWKEMQRKIEQLQKEVKPRR 54 (141)
T ss_pred HHHHHHHHHHHHHHHHHHhhcchhh
Confidence 3667889999999999999998876
No 156
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=21.99 E-value=2.7e+02 Score=19.57 Aligned_cols=34 Identities=18% Similarity=0.262 Sum_probs=23.7
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHhhhHHHHHHHhh
Q psy13624 4 EAHITHLNNEIAKLKTQVQQVIGENETLKAALNA 37 (187)
Q Consensus 4 ea~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~~~ 37 (187)
|.++-.+.+.|..|...|-+.+.+...|+.++..
T Consensus 10 E~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~ 43 (69)
T PF04102_consen 10 EIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRL 43 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677777777777778888888766554
No 157
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=21.70 E-value=2.1e+02 Score=23.61 Aligned_cols=24 Identities=17% Similarity=0.252 Sum_probs=10.4
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHH
Q psy13624 9 HLNNEIAKLKTQVQQVIGENETLK 32 (187)
Q Consensus 9 ~l~~ei~~Lq~~i~~L~~EN~~Lk 32 (187)
+|..+|+.+.+.++.|+.|...|.
T Consensus 134 ~l~~~l~ek~k~~e~l~DE~~~L~ 157 (194)
T PF08614_consen 134 DLEEELKEKNKANEILQDELQALQ 157 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444443
No 158
>KOG4603|consensus
Probab=21.56 E-value=1.9e+02 Score=25.10 Aligned_cols=35 Identities=23% Similarity=0.385 Sum_probs=25.3
Q ss_pred CchhHHHHhHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy13624 1 MISEAHITHLNNEIAKLKTQVQQVIGENETLKAAL 35 (187)
Q Consensus 1 ~~Sea~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~ 35 (187)
|.|++.++.|..+|..|+.+++.|+.+-+-....+
T Consensus 75 ~~~~eel~~ld~~i~~l~ek~q~l~~t~s~veaEi 109 (201)
T KOG4603|consen 75 MVSDEELQVLDGKIVALTEKVQSLQQTCSYVEAEI 109 (201)
T ss_pred CCChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777778888888888888888877766555443
No 159
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=21.42 E-value=1.6e+02 Score=22.46 Aligned_cols=25 Identities=28% Similarity=0.317 Sum_probs=16.7
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHhhh
Q psy13624 4 EAHITHLNNEIAKLKTQVQQVIGEN 28 (187)
Q Consensus 4 ea~iq~l~~ei~~Lq~~i~~L~~EN 28 (187)
|.+|.+|..++..|..++++|..+.
T Consensus 48 ek~v~~L~~e~~~l~~E~e~L~~~l 72 (87)
T PF12709_consen 48 EKKVDELENENKALKRENEQLKKKL 72 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777666643
No 160
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=21.27 E-value=1.5e+02 Score=25.16 Aligned_cols=28 Identities=36% Similarity=0.490 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhh
Q psy13624 10 LNNEIAKLKTQVQQVIGENETLKAALNA 37 (187)
Q Consensus 10 l~~ei~~Lq~~i~~L~~EN~~Lk~~~~~ 37 (187)
|+++|..|+.++++|..+|..|+.....
T Consensus 109 ~~~e~~kl~~~~e~L~~e~~~L~~~~~~ 136 (170)
T PRK13923 109 LSEQIGKLQEEEEKLSWENQTLKQELAI 136 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888888888755433
No 161
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=21.19 E-value=1.9e+02 Score=21.06 Aligned_cols=30 Identities=30% Similarity=0.287 Sum_probs=18.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy13624 6 HITHLNNEIAKLKTQVQQVIGENETLKAAL 35 (187)
Q Consensus 6 ~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~ 35 (187)
.+.++..+.-.|+..++.|+.|+..++..+
T Consensus 37 ~~~~~~keNieLKve~~~L~~el~~~~~~l 66 (75)
T PF07989_consen 37 SIEELLKENIELKVEVESLKRELQEKKKLL 66 (75)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555566666666666666666544
No 162
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=20.87 E-value=1.5e+02 Score=25.97 Aligned_cols=29 Identities=14% Similarity=0.323 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHhh
Q psy13624 9 HLNNEIAKLKTQVQQVIGENETLKAALNA 37 (187)
Q Consensus 9 ~l~~ei~~Lq~~i~~L~~EN~~Lk~~~~~ 37 (187)
+|..+|..||.+|.+|...+.++..++..
T Consensus 58 ~l~~ql~~lq~ev~~LrG~~E~~~~~l~~ 86 (263)
T PRK10803 58 QLQQQLSDNQSDIDSLRGQIQENQYQLNQ 86 (263)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 56666666666666666666666666655
No 163
>PRK10722 hypothetical protein; Provisional
Probab=20.63 E-value=2.9e+02 Score=24.82 Aligned_cols=38 Identities=21% Similarity=0.331 Sum_probs=27.7
Q ss_pred chhHHHHhHHHHHHHHHHHHHHHHhhhHHHH---HHHhhcC
Q psy13624 2 ISEAHITHLNNEIAKLKTQVQQVIGENETLK---AALNARN 39 (187)
Q Consensus 2 ~Sea~iq~l~~ei~~Lq~~i~~L~~EN~~Lk---~~~~~~~ 39 (187)
.||+++.-|+++.+.||.++..++..-..|. +++++.+
T Consensus 173 ~sD~qlD~lrqq~~~Lq~~L~~t~rKLEnLTdIERqLSsRk 213 (247)
T PRK10722 173 SSDSELDALRQQQQRLQYQLELTTRKLENLTDIERQLSSRK 213 (247)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 3677888888888888888877777666665 5776644
No 164
>PRK00295 hypothetical protein; Provisional
Probab=20.51 E-value=2.8e+02 Score=19.61 Aligned_cols=32 Identities=16% Similarity=0.147 Sum_probs=21.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhhHHHHHHHhh
Q psy13624 6 HITHLNNEIAKLKTQVQQVIGENETLKAALNA 37 (187)
Q Consensus 6 ~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~~~ 37 (187)
|+-.+.+.|..|-..|-+.+.+...|+.++..
T Consensus 13 kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~ 44 (68)
T PRK00295 13 RQAFQDDTIQALNDVLVEQQRVIERLQLQMAA 44 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33355566677777777777777777766544
No 165
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=20.39 E-value=2.2e+02 Score=22.55 Aligned_cols=26 Identities=15% Similarity=0.362 Sum_probs=16.8
Q ss_pred HHhHHHHHHHHHHHHHHHHhhhHHHH
Q psy13624 7 ITHLNNEIAKLKTQVQQVIGENETLK 32 (187)
Q Consensus 7 iq~l~~ei~~Lq~~i~~L~~EN~~Lk 32 (187)
|..|+++||++..++..|+.++..|.
T Consensus 18 ve~L~s~lr~~E~E~~~l~~el~~l~ 43 (120)
T PF12325_consen 18 VERLQSQLRRLEGELASLQEELARLE 43 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33666666666666666666666664
No 166
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=20.39 E-value=1e+02 Score=22.21 Aligned_cols=46 Identities=13% Similarity=0.209 Sum_probs=26.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhccCCCC-CCccchHHHHHHHHHHHH
Q psy13624 83 SEEVVRRTDQVTKRIQELAAHMRSSDKC-HSFVPHAERIRIAVSELS 128 (187)
Q Consensus 83 ~e~Vir~TE~vT~~IqeLl~aaq~~~~~-~~fvpcae~I~~AV~el~ 128 (187)
.|.+...++.+.+...+++.+.++.... +.++.....+...|.++.
T Consensus 42 ~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g~~v~~l~ 88 (90)
T PF06103_consen 42 VDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADLGESVSELN 88 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 3455566666666666666666653222 455555555555555554
No 167
>PRK14160 heat shock protein GrpE; Provisional
Probab=20.37 E-value=1.9e+02 Score=25.15 Aligned_cols=32 Identities=38% Similarity=0.454 Sum_probs=24.6
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy13624 4 EAHITHLNNEIAKLKTQVQQVIGENETLKAAL 35 (187)
Q Consensus 4 ea~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~ 35 (187)
|+++..|..++..|+..+..|..+...|+..+
T Consensus 53 ~~~~~~l~~e~~~l~~~l~~l~~e~~elkd~~ 84 (211)
T PRK14160 53 EVKIEELKDENNKLKEENKKLENELEALKDRL 84 (211)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666888888888888888888888887544
Done!