Query psy13624
Match_columns 187
No_of_seqs 47 out of 49
Neff 4.2
Searched_HMMs 29240
Date Fri Aug 16 16:03:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13624.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13624hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jx0_A ARF GTPase-activating p 100.0 2.6E-47 9E-52 303.2 10.4 110 77-187 10-130 (135)
2 2w6a_A ARF GTPase-activating p 98.4 1.1E-07 3.8E-12 66.6 3.6 32 2-33 24-62 (63)
3 3gm3_A Protein tyrosine kinase 93.4 0.7 2.4E-05 37.3 9.9 102 82-185 20-137 (153)
4 1t2k_D Cyclic-AMP-dependent tr 92.7 0.19 6.6E-06 33.8 4.8 32 4-35 28-59 (61)
5 1jcd_A Major outer membrane li 91.8 0.25 8.7E-06 33.2 4.5 35 3-37 2-36 (52)
6 1k04_A FADK 1, focal adhesion 90.9 2.3 7.7E-05 34.6 10.1 102 82-185 30-147 (162)
7 1ci6_A Transcription factor AT 90.6 0.43 1.5E-05 32.6 4.8 32 4-35 29-60 (63)
8 1sj8_A Talin 1; structural pro 90.2 2.6 8.8E-05 37.3 10.6 105 82-186 123-239 (308)
9 2jee_A YIIU; FTSZ, septum, coi 89.8 0.51 1.7E-05 34.4 4.9 32 4-35 12-43 (81)
10 1jnm_A Proto-oncogene C-JUN; B 89.8 0.27 9.2E-06 33.2 3.2 32 4-35 28-59 (62)
11 2yy0_A C-MYC-binding protein; 89.4 0.57 2E-05 31.3 4.6 33 4-36 18-50 (53)
12 2oqq_A Transcription factor HY 89.4 0.73 2.5E-05 29.9 4.8 32 4-35 9-40 (42)
13 1hjb_A Ccaat/enhancer binding 89.2 0.57 1.9E-05 34.3 4.8 37 5-41 43-79 (87)
14 3dyj_A Talin-1; helix bundles, 88.5 3.9 0.00013 36.5 10.6 100 81-184 209-324 (332)
15 3t6g_B Breast cancer anti-estr 88.1 3.7 0.00013 35.0 9.8 100 85-184 107-219 (229)
16 1gu4_A CAAT/enhancer binding p 87.6 0.59 2E-05 33.6 4.0 35 5-39 43-77 (78)
17 2akf_A Coronin-1A; coiled coil 87.0 0.91 3.1E-05 27.6 3.9 26 9-34 3-28 (32)
18 1gd2_E Transcription factor PA 86.6 0.89 3.1E-05 32.0 4.4 33 4-36 28-60 (70)
19 2wt7_A Proto-oncogene protein 86.3 1.2 4.3E-05 30.1 4.8 31 5-35 30-60 (63)
20 1tr2_A Vinculin isoform 1; act 84.6 1.8 6.2E-05 43.2 7.0 103 82-184 915-1039(1066)
21 2oa5_A Hypothetical protein BQ 84.0 0.67 2.3E-05 35.6 2.9 23 14-36 10-32 (110)
22 1nkp_B MAX protein, MYC proto- 82.7 2.3 7.8E-05 29.8 5.1 32 7-38 49-80 (83)
23 1qkr_A Vinculin, tail domain; 82.5 6.1 0.00021 32.6 8.3 103 82-184 37-161 (188)
24 1dip_A Delta-sleep-inducing pe 81.8 1.4 4.8E-05 31.9 3.7 29 7-35 17-45 (78)
25 2l6f_A Focal adhesion kinase 1 81.7 0.33 1.1E-05 41.1 0.0 101 83-185 8-124 (215)
26 2jsw_A Talin-1; C-terminal act 77.8 7.2 0.00025 32.1 7.2 106 79-184 45-179 (189)
27 1nlw_A MAD protein, MAX dimeri 77.4 3.2 0.00011 29.4 4.4 30 7-36 49-78 (80)
28 2dgc_A Protein (GCN4); basic d 75.3 3.6 0.00012 28.0 4.0 25 12-36 30-54 (63)
29 1sj8_A Talin 1; structural pro 74.1 20 0.00069 31.6 9.5 92 92-185 105-204 (308)
30 1nkp_A C-MYC, MYC proto-oncoge 72.3 5.5 0.00019 28.6 4.6 31 7-37 54-84 (88)
31 2x0c_A Talin-1; cytoskeleton, 68.9 25 0.00084 30.6 8.9 50 136-185 137-192 (309)
32 1ci6_A Transcription factor AT 68.0 6.7 0.00023 26.5 4.0 27 10-36 21-47 (63)
33 1dh3_A Transcription factor CR 68.0 7 0.00024 25.9 4.0 23 14-36 24-46 (55)
34 3vf0_A Vinculin, metavinculin; 67.5 28 0.00096 30.4 8.8 104 81-184 131-256 (283)
35 2wt7_A Proto-oncogene protein 67.3 7 0.00024 26.3 4.0 26 11-36 22-47 (63)
36 1dh3_A Transcription factor CR 67.2 7.1 0.00024 25.8 4.0 30 6-35 23-52 (55)
37 3nmd_A CGMP dependent protein 66.9 5 0.00017 28.6 3.3 31 7-37 35-65 (72)
38 1t2k_D Cyclic-AMP-dependent tr 66.3 7.7 0.00026 25.7 4.0 26 11-36 21-46 (61)
39 1gd2_E Transcription factor PA 66.3 4 0.00014 28.6 2.7 28 4-31 35-69 (70)
40 2dgc_A Protein (GCN4); basic d 66.2 8.1 0.00028 26.2 4.2 31 5-35 30-60 (63)
41 3trt_A Vimentin; cytoskeleton, 66.1 8.9 0.0003 26.2 4.4 26 7-32 51-76 (77)
42 1jnm_A Proto-oncogene C-JUN; B 65.3 8 0.00027 25.8 4.0 24 12-35 22-45 (62)
43 2wt7_B Transcription factor MA 64.7 10 0.00036 27.8 4.8 30 8-37 51-80 (90)
44 3efg_A Protein SLYX homolog; x 64.6 8.6 0.0003 27.2 4.2 34 4-37 27-60 (78)
45 2xdj_A Uncharacterized protein 63.7 9.9 0.00034 27.3 4.4 27 7-33 29-55 (83)
46 1kd8_B GABH BLL, GCN4 acid bas 58.2 19 0.00065 22.5 4.4 20 6-25 9-28 (36)
47 4dzn_A Coiled-coil peptide CC- 56.1 22 0.00076 21.4 4.3 27 7-33 4-30 (33)
48 1t6f_A Geminin; coiled-coil, c 55.6 16 0.00054 22.9 3.7 24 9-32 11-34 (37)
49 1am9_A Srebp-1A, protein (ster 52.8 13 0.00046 26.0 3.5 26 11-36 49-74 (82)
50 1kd8_A GABH AIV, GCN4 acid bas 52.6 23 0.00078 22.1 4.1 23 5-27 8-30 (36)
51 2l5g_A GPS2 protein, G protein 52.2 25 0.00085 22.2 4.2 26 6-31 9-34 (38)
52 3m48_A General control protein 52.0 19 0.00064 22.1 3.6 18 16-33 4-21 (33)
53 3nmd_A CGMP dependent protein 51.6 28 0.00094 24.7 5.0 33 3-35 38-70 (72)
54 1go4_E MAD1 (mitotic arrest de 51.5 16 0.00056 27.3 4.0 30 6-35 13-42 (100)
55 4f7g_B Talin-1; alpha-helix bu 49.5 41 0.0014 28.1 6.6 82 82-174 67-150 (216)
56 3s9g_A Protein hexim1; cyclin 49.4 22 0.00075 26.9 4.3 21 13-33 66-86 (104)
57 1uii_A Geminin; human, DNA rep 48.9 18 0.00062 26.4 3.7 24 9-32 50-73 (83)
58 3swy_A Cyclic nucleotide-gated 48.3 38 0.0013 22.0 4.8 29 3-31 3-31 (46)
59 1u89_A Talin 1, talin; 4-helix 48.3 96 0.0033 24.2 12.5 100 81-184 12-122 (139)
60 3a5t_A Transcription factor MA 47.5 1.6 5.3E-05 33.2 -2.2 31 7-37 60-90 (107)
61 1xwj_B Talin, metavinculin; ce 46.6 23 0.00079 20.1 3.2 22 84-105 4-25 (26)
62 2jee_A YIIU; FTSZ, septum, coi 46.1 33 0.0011 24.8 4.7 12 24-35 53-64 (81)
63 3v86_A De novo design helix; c 45.9 24 0.00083 20.4 3.2 24 9-32 4-27 (27)
64 2wq1_A General control protein 45.8 27 0.00092 21.4 3.6 15 17-31 5-19 (33)
65 4dzo_A Mitotic spindle assembl 45.6 15 0.00051 28.1 3.0 28 11-38 3-30 (123)
66 1hlo_A Protein (transcription 45.2 14 0.00047 25.6 2.6 22 12-33 57-78 (80)
67 3mq7_A Bone marrow stromal ant 44.2 33 0.0011 26.6 4.7 29 5-33 71-99 (121)
68 3swk_A Vimentin; cytoskeleton, 43.6 12 0.00042 26.7 2.2 25 13-37 1-25 (86)
69 2zxx_A Geminin; coiled-coil, c 43.4 24 0.00082 25.4 3.6 27 9-35 38-64 (79)
70 1wlq_A Geminin; coiled-coil; 2 43.3 22 0.00074 25.9 3.4 25 9-33 42-66 (83)
71 3he5_A Synzip1; heterodimeric 42.2 22 0.00075 23.1 2.9 20 14-33 5-24 (49)
72 2l10_A Talin-1; helical bundle 42.1 1.1E+02 0.0037 24.3 7.7 103 84-186 41-154 (158)
73 1fzc_C Fibrin; blood coagulati 42.1 20 0.00067 31.5 3.6 30 4-33 10-39 (319)
74 1l9l_A Granulysin; saposin fol 42.0 76 0.0026 21.7 6.0 49 121-170 8-58 (74)
75 2wg5_A General control protein 41.3 25 0.00086 25.9 3.6 27 6-32 8-34 (109)
76 3m9b_A Proteasome-associated A 40.9 21 0.00072 30.7 3.5 24 9-32 72-95 (251)
77 3s9g_A Protein hexim1; cyclin 40.6 26 0.00089 26.5 3.6 30 3-32 63-92 (104)
78 1a92_A Delta antigen; leucine 40.4 27 0.00092 23.2 3.2 26 6-31 15-40 (50)
79 3hnw_A Uncharacterized protein 39.7 44 0.0015 25.8 4.9 26 9-34 93-118 (138)
80 1wt6_A Myotonin-protein kinase 39.7 27 0.00094 25.3 3.5 29 4-32 44-72 (81)
81 1rtm_1 Mannose-binding protein 39.6 28 0.00094 25.4 3.6 25 10-34 2-26 (149)
82 1deb_A APC protein, adenomatou 39.5 29 0.00099 23.3 3.3 20 16-35 7-26 (54)
83 3mq7_A Bone marrow stromal ant 39.0 44 0.0015 25.9 4.7 30 6-35 79-108 (121)
84 2qsb_A UPF0147 protein TA0600; 38.8 82 0.0028 23.1 6.0 51 87-143 5-55 (89)
85 1jcd_A Major outer membrane li 37.8 61 0.0021 21.4 4.7 28 5-32 11-38 (52)
86 3swf_A CGMP-gated cation chann 37.4 59 0.002 23.1 4.8 27 3-29 5-31 (74)
87 1hlo_A Protein (transcription 36.9 26 0.00088 24.2 2.9 22 7-28 59-80 (80)
88 3ay5_A Cyclin-D1-binding prote 36.9 2.1E+02 0.0073 25.0 11.4 106 80-185 11-135 (360)
89 1uii_A Geminin; human, DNA rep 35.9 40 0.0014 24.5 3.8 28 9-36 43-70 (83)
90 2oxj_A Hybrid alpha/beta pepti 35.7 41 0.0014 20.7 3.3 19 15-33 4-22 (34)
91 1gk7_A Vimentin; intermediate 35.7 76 0.0026 19.6 4.6 32 5-36 6-37 (39)
92 3c3f_A Alpha/beta peptide with 35.5 48 0.0017 20.4 3.6 17 16-32 5-21 (34)
93 1hjb_A Ccaat/enhancer binding 34.9 46 0.0016 24.1 4.0 23 14-36 38-60 (87)
94 3tnu_B Keratin, type II cytosk 34.4 37 0.0013 25.4 3.7 26 9-34 33-58 (129)
95 2jn6_A Protein CGL2762, transp 34.3 4.9 0.00017 27.8 -1.2 24 9-32 63-86 (97)
96 1a93_B MAX protein, coiled coi 34.0 66 0.0023 19.8 4.0 27 10-36 5-31 (34)
97 3kqg_A Langerin, C-type lectin 33.5 66 0.0022 24.0 5.0 32 9-40 20-51 (182)
98 1gu4_A CAAT/enhancer binding p 33.2 52 0.0018 23.2 4.0 23 14-36 38-60 (78)
99 1lwu_C Fibrinogen gamma chain; 32.5 50 0.0017 29.0 4.6 31 4-34 25-55 (323)
100 2wt7_B Transcription factor MA 32.4 78 0.0027 23.1 5.0 33 4-36 54-86 (90)
101 1zxa_A CGMP-dependent protein 32.0 39 0.0013 23.6 3.1 32 4-35 24-55 (67)
102 1go4_E MAD1 (mitotic arrest de 31.5 79 0.0027 23.5 5.0 27 11-37 11-37 (100)
103 1t3j_A Mitofusin 1; coiled coi 31.3 65 0.0022 23.9 4.4 25 8-32 50-74 (96)
104 2er8_A Regulatory protein Leu3 31.3 24 0.00081 23.1 1.9 21 5-25 49-69 (72)
105 3viq_B Mating-type switching p 31.1 47 0.0016 24.1 3.6 24 9-32 5-28 (85)
106 3tnu_B Keratin, type II cytosk 31.1 72 0.0025 23.7 4.8 32 5-36 36-67 (129)
107 2wuj_A Septum site-determining 30.9 53 0.0018 21.5 3.6 24 9-32 31-54 (57)
108 3c3g_A Alpha/beta peptide with 30.5 66 0.0023 19.7 3.6 18 16-33 4-21 (33)
109 3s4r_A Vimentin; alpha-helix, 30.4 63 0.0022 23.2 4.2 27 10-36 54-80 (93)
110 2wvr_A Geminin; DNA replicatio 29.8 46 0.0016 27.9 3.7 24 9-32 119-142 (209)
111 1zme_C Proline utilization tra 29.6 45 0.0015 21.5 3.0 20 7-26 46-65 (70)
112 1uo4_A General control protein 29.5 70 0.0024 19.7 3.6 18 16-33 5-22 (34)
113 3dyj_A Talin-1; helix bundles, 29.3 3E+02 0.01 24.3 9.7 23 84-106 117-139 (332)
114 1fzc_C Fibrin; blood coagulati 28.3 61 0.0021 28.4 4.5 32 4-35 17-48 (319)
115 2zvf_A Alanyl-tRNA synthetase; 28.2 68 0.0023 24.2 4.3 27 5-31 32-58 (171)
116 4etp_A Kinesin-like protein KA 28.1 68 0.0023 28.5 4.8 28 5-32 10-37 (403)
117 2wg5_A General control protein 27.9 52 0.0018 24.1 3.4 21 16-36 11-31 (109)
118 1x4t_A Hypothetical protein LO 27.8 78 0.0027 23.4 4.3 30 2-31 49-78 (92)
119 3tq7_B Microtubule-associated 27.0 34 0.0011 24.6 2.1 25 5-29 1-25 (82)
120 3tnu_A Keratin, type I cytoske 26.9 38 0.0013 25.4 2.6 25 9-33 35-59 (131)
121 4etp_A Kinesin-like protein KA 26.6 59 0.002 28.9 4.1 28 6-33 4-31 (403)
122 2hy6_A General control protein 26.5 85 0.0029 19.3 3.6 19 15-33 4-22 (34)
123 1rtm_1 Mannose-binding protein 26.4 61 0.0021 23.5 3.6 23 5-27 4-26 (149)
124 1p9i_A Cortexillin I/GCN4 hybr 26.4 45 0.0015 19.8 2.3 17 17-33 4-20 (31)
125 3ol1_A Vimentin; structural ge 26.3 78 0.0027 23.5 4.2 30 9-38 17-46 (119)
126 2qzg_A Conserved uncharacteriz 26.2 2E+02 0.0067 21.3 6.2 43 94-143 17-59 (94)
127 1lwu_C Fibrinogen gamma chain; 26.1 85 0.0029 27.5 5.0 34 4-37 18-51 (323)
128 1nkp_B MAX protein, MYC proto- 26.1 66 0.0023 22.1 3.5 25 11-35 46-70 (83)
129 2r2v_A GCN4 leucine zipper; co 26.0 88 0.003 19.2 3.6 17 16-32 5-21 (34)
130 1uuj_A Platelet-activating fac 25.6 29 0.00098 25.4 1.6 24 14-37 60-83 (88)
131 1buu_A Protein (mannose-bindin 25.5 62 0.0021 24.2 3.6 24 10-33 21-44 (168)
132 3o0z_A RHO-associated protein 25.2 1E+02 0.0036 24.8 5.0 31 5-35 97-127 (168)
133 3azd_A Short alpha-tropomyosin 25.0 33 0.0011 21.0 1.6 25 11-35 3-27 (37)
134 1qsd_A Protein (beta-tubulin b 24.9 39 0.0013 25.1 2.3 43 112-154 61-103 (106)
135 2j5u_A MREC protein; bacterial 24.5 74 0.0025 26.4 4.2 32 8-39 29-63 (255)
136 2bni_A General control protein 24.3 98 0.0034 19.0 3.6 17 16-32 5-21 (34)
137 2zqm_A Prefoldin beta subunit 24.3 1.2E+02 0.0042 21.3 4.8 33 5-37 77-109 (117)
138 1buu_A Protein (mannose-bindin 24.0 70 0.0024 23.9 3.6 23 4-26 22-44 (168)
139 1fmh_A General control protein 24.0 75 0.0026 19.1 2.9 24 13-36 2-25 (33)
140 1gk6_A Vimentin; intermediate 23.7 1.2E+02 0.004 20.0 4.3 28 4-31 6-33 (59)
141 3vf0_A Vinculin, metavinculin; 23.5 1.2E+02 0.0042 26.4 5.4 94 81-174 159-260 (283)
142 1qkr_A Vinculin, tail domain; 23.5 82 0.0028 25.8 4.1 94 81-174 64-165 (188)
143 3tnu_A Keratin, type I cytoske 23.3 87 0.003 23.4 4.0 30 6-35 39-68 (131)
144 1zxa_A CGMP-dependent protein 23.2 98 0.0033 21.5 3.9 27 12-38 25-51 (67)
145 1fxk_C Protein (prefoldin); ar 22.8 1E+02 0.0034 22.6 4.2 23 84-106 91-113 (133)
146 2w6b_A RHO guanine nucleotide 22.6 1.2E+02 0.0043 20.4 4.2 24 10-33 8-31 (56)
147 1fxk_A Prefoldin; archaeal pro 22.3 1.5E+02 0.005 20.6 4.8 32 5-36 72-103 (107)
148 1l8d_A DNA double-strand break 21.9 1.5E+02 0.0052 20.8 4.9 30 6-35 72-101 (112)
149 2jx0_A ARF GTPase-activating p 21.8 1.6E+02 0.0056 23.0 5.3 57 78-134 64-132 (135)
150 3l39_A Putative PHOU-like phos 21.6 1.9E+02 0.0064 23.1 6.0 27 80-106 26-52 (227)
151 2v71_A Nuclear distribution pr 21.5 1.3E+02 0.0046 24.5 5.0 29 7-35 51-79 (189)
152 2di0_A Activating signal coint 21.2 1.1E+02 0.0039 21.3 3.9 38 115-153 8-45 (71)
153 2v66_B Nuclear distribution pr 20.8 1.1E+02 0.0039 23.0 4.2 21 12-32 35-55 (111)
154 3u06_A Protein claret segregat 20.8 1.1E+02 0.0039 27.2 4.8 27 7-33 12-38 (412)
155 3vmx_A Voltage-gated hydrogen 20.3 1.9E+02 0.0065 18.9 4.9 32 3-34 2-33 (48)
No 1
>2jx0_A ARF GTPase-activating protein GIT1; paxillin binding domain homologue, ANK repeat, cytoplasm, GTPase activation, metal-binding; NMR {Rattus norvegicus}
Probab=100.00 E-value=2.6e-47 Score=303.19 Aligned_cols=110 Identities=41% Similarity=0.655 Sum_probs=104.7
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHHHHhccCCCCCCccchHHHHHHHHHHHHhhcCCCCCchHHHHHHHHhhhhhHHHHH
Q psy13624 77 TTRMPQSEEVVRRTDQVTKRIQELAAHMRSSDKCHSFVPHAERIRIAVSELSAIFPQNTNNDLIRHALRSLNTSTVRLQA 156 (187)
Q Consensus 77 ~~~~P~~e~Vir~TE~vT~~IqeLl~aaq~~~~~~~fvpcae~I~~AV~el~alFP~~~~~e~vr~~L~~L~~~a~~Lq~ 156 (187)
.+++|++||||||||+|||||||||+|||++++ ++|+||||||++||+||++|||++|++|+||.+|++|++++.+||+
T Consensus 10 ~~~~P~~e~Vvr~TE~ITk~IqeLl~AaQ~~~~-~sfvpcserI~~AV~el~aLfp~~p~~etvr~sL~~L~~~a~~Lq~ 88 (135)
T 2jx0_A 10 DPGLPSTEDVILKTEQVTKNIQELLRAAQEFKH-DSFVPCSEKIHLAVTEMASLFPKRPALEPVRSSLRLLNASAYRLQS 88 (135)
T ss_dssp BSSCSCHHHHHHHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHHHTSCSSBCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHhcccc-CccccHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 467999999999999999999999999999865 9999999999999999999999999999999999999999999999
Q ss_pred Hhhhh-----------HHhHHHHHHHHHHHHHHHHHhhhhcC
Q psy13624 157 ECAQL-----------EGSAERVRSCAYNMAKANKQLLTQFQ 187 (187)
Q Consensus 157 eC~~~-----------q~~t~qv~~cAYdIAKAaK~LvT~f~ 187 (187)
||+.+ |++|+|||+||||||||||+|||+|+
T Consensus 89 EC~~~q~~~~~~~~~iq~~tqqVi~cAYdIAkAaK~Lvt~~~ 130 (135)
T 2jx0_A 89 ECRKTVPPEPGAPVDFQLLTQQVIQCAYDIAKAAKQLVTITT 130 (135)
T ss_dssp HHHSCCCSCTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHccCCCcccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99766 55699999999999999999999985
No 2
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=98.45 E-value=1.1e-07 Score=66.55 Aligned_cols=32 Identities=31% Similarity=0.537 Sum_probs=30.3
Q ss_pred chhHHHH-------hHHHHHHHHHHHHHHHHhhhHHHHH
Q psy13624 2 ISEAHIT-------HLNNEIAKLKTQVQQVIGENETLKA 33 (187)
Q Consensus 2 ~Sea~iq-------~l~~ei~~Lq~~i~~L~~EN~~Lk~ 33 (187)
+|||||| +|++|||.||++|++|++||+.||.
T Consensus 24 aSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~ 62 (63)
T 2w6a_A 24 TSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence 6999999 8999999999999999999999983
No 3
>3gm3_A Protein tyrosine kinase 2 beta; four-helix bundle, transferase; 2.60A {Homo sapiens} SCOP: a.24.14.0 PDB: 3gm1_A 3gm2_A 3u3f_A 3u3c_A 2lk4_A
Probab=93.36 E-value=0.7 Score=37.29 Aligned_cols=102 Identities=14% Similarity=0.202 Sum_probs=74.8
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHhccCCCCCCccchHHHHHHHHHHHH-------hhcCCCCCchHHHHHHHHhhhhhHHH
Q psy13624 82 QSEEVVRRTDQVTKRIQELAAHMRSSDKCHSFVPHAERIRIAVSELS-------AIFPQNTNNDLIRHALRSLNTSTVRL 154 (187)
Q Consensus 82 ~~e~Vir~TE~vT~~IqeLl~aaq~~~~~~~fvpcae~I~~AV~el~-------alFP~~~~~e~vr~~L~~L~~~a~~L 154 (187)
+.|.|...|=.|.|.+-+|=...+.. ..+.|+.|-..|..+..+|. .+||... -.+|.-+=+.|+..-..|
T Consensus 20 t~D~VY~at~~VVkaV~~Ls~~v~~a-~~e~Y~~lVK~VGl~LR~Ll~sVd~~~~~lp~s~-~~EIema~k~L~kDM~eL 97 (153)
T 3gm3_A 20 TDDLVYLNVMELVRAVLELKNELAQL-PPEGYVVVVKNVGLTLRKLIGSVDDLLPSLPSSS-RTEIEGTQKLLNKDLAEL 97 (153)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHGGGC-CHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCHHH-HHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHhhhhhc-ChHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHH-HHHHHHHHHHHHHHHHHH
Confidence 36889999999999999999999984 44899999999987765555 4565544 367777777776654444
Q ss_pred HHHhhhhH---------HhHHHHHHHHHHHHHHHHHhhhh
Q psy13624 155 QAECAQLE---------GSAERVRSCAYNMAKANKQLLTQ 185 (187)
Q Consensus 155 q~eC~~~q---------~~t~qv~~cAYdIAKAaK~LvT~ 185 (187)
-..=+-.| -.-.++...||-+|..+|.|+.-
T Consensus 98 Is~MkLAqq~~~TtL~eEyrr~MLsaaH~LA~DaKNLlD~ 137 (153)
T 3gm3_A 98 INKMRLAQQNAVTSLSEECKRQMLTASHTLAVDAKNLLDA 137 (153)
T ss_dssp HHHHHHHHHTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33332221 12567889999999999999863
No 4
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=92.66 E-value=0.19 Score=33.82 Aligned_cols=32 Identities=25% Similarity=0.283 Sum_probs=26.8
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy13624 4 EAHITHLNNEIAKLKTQVQQVIGENETLKAAL 35 (187)
Q Consensus 4 ea~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~ 35 (187)
|.++.+|+.+...|+.+|+.|..|+..||+.+
T Consensus 28 e~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 28 EKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566889999999999999999999998765
No 5
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=91.77 E-value=0.25 Score=33.20 Aligned_cols=35 Identities=11% Similarity=0.203 Sum_probs=30.8
Q ss_pred hhHHHHhHHHHHHHHHHHHHHHHhhhHHHHHHHhh
Q psy13624 3 SEAHITHLNNEIAKLKTQVQQVIGENETLKAALNA 37 (187)
Q Consensus 3 Sea~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~~~ 37 (187)
|+++|++|+.++..|-.+|.+|+++...|++.+..
T Consensus 2 s~aki~~Lss~V~~L~~kVdqLssdV~al~~~v~~ 36 (52)
T 1jcd_A 2 SNAKADQASSDAQTANAKADQASNDANAARSDAQA 36 (52)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999999999999999999976543
No 6
>1k04_A FADK 1, focal adhesion kinase 1; UP-DOWN-UP-DOWN four helical bundle forming A helix-exchange transferase; 1.95A {Homo sapiens} SCOP: a.24.14.1 PDB: 1k05_A 3b71_A 1ow6_A 1ow7_A 1ow8_A 1ktm_A 1qvx_A 1pv3_A 2ra7_A* 1k40_A
Probab=90.88 E-value=2.3 Score=34.59 Aligned_cols=102 Identities=19% Similarity=0.304 Sum_probs=72.6
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHhccCCCCCCccchHHHHHHHHHHHH-------hhcCCCCCchHHHHHHHHhhhhhHHH
Q psy13624 82 QSEEVVRRTDQVTKRIQELAAHMRSSDKCHSFVPHAERIRIAVSELS-------AIFPQNTNNDLIRHALRSLNTSTVRL 154 (187)
Q Consensus 82 ~~e~Vir~TE~vT~~IqeLl~aaq~~~~~~~fvpcae~I~~AV~el~-------alFP~~~~~e~vr~~L~~L~~~a~~L 154 (187)
+.|.|...|-.|.|.+-+|=..++..+. +.|++|-..|..+...|. ..||... -.+|.-+-+.|+.--.-|
T Consensus 30 t~D~Vy~at~~VVkaV~~Ls~~v~~a~~-eey~~~VK~VGl~LR~Ll~sVd~~~~~lp~s~-~rEVema~k~L~kDM~eL 107 (162)
T 1k04_A 30 SNDKVYENVTGLVKAVIEMSSKIQPAPP-EEYVPMVKEVGLALRTLLATVDETIPLLPAST-HREIEMAQKLLNSDLGEL 107 (162)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHSCCCG-GGHHHHHHHHHHHHHHHHHHHHHHGGGSCHHH-HHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHhhhhcCh-HHHHHHHHHHHHHHHHHHHhHhhhhhccCHHh-hHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999998655 999999988877655544 6776555 455666666555443333
Q ss_pred HHHhhhhH---------HhHHHHHHHHHHHHHHHHHhhhh
Q psy13624 155 QAECAQLE---------GSAERVRSCAYNMAKANKQLLTQ 185 (187)
Q Consensus 155 q~eC~~~q---------~~t~qv~~cAYdIAKAaK~LvT~ 185 (187)
...=+..| ..=.++...|+-+|..+|.|+.-
T Consensus 108 is~mklaq~~~~TtL~~EyRk~mLsaah~LA~daKNLld~ 147 (162)
T 1k04_A 108 INKMKLAQQYVMTSLQQEYKKQMLTAAHALAVDAKNLLDV 147 (162)
T ss_dssp HHHHHHHHHTTTSSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhccCccHHHHHHHHHHhhhHHHHHhcccHHHH
Confidence 22222221 11346789999999999999853
No 7
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=90.60 E-value=0.43 Score=32.60 Aligned_cols=32 Identities=19% Similarity=0.238 Sum_probs=26.1
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy13624 4 EAHITHLNNEIAKLKTQVQQVIGENETLKAAL 35 (187)
Q Consensus 4 ea~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~ 35 (187)
+.++.+|+.+...|...|..|+.|+..||..+
T Consensus 29 e~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 29 TGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566888888889999999999999988654
No 8
>1sj8_A Talin 1; structural protein; 2.60A {Mus musculus} SCOP: a.215.1.1 a.216.1.1
Probab=90.16 E-value=2.6 Score=37.34 Aligned_cols=105 Identities=13% Similarity=0.172 Sum_probs=76.2
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHhccCCC--CCCccchHHHHHHHHHHHHh-hcCCC---CCchHHHHHHHHhhhhhHHHH
Q psy13624 82 QSEEVVRRTDQVTKRIQELAAHMRSSDK--CHSFVPHAERIRIAVSELSA-IFPQN---TNNDLIRHALRSLNTSTVRLQ 155 (187)
Q Consensus 82 ~~e~Vir~TE~vT~~IqeLl~aaq~~~~--~~~fvpcae~I~~AV~el~a-lFP~~---~~~e~vr~~L~~L~~~a~~Lq 155 (187)
..+.+...+..||..|..|++++..... +..++.++-+|..+-.++.. |=|.+ .-.|.+-++-+....+|..|-
T Consensus 123 ~~~~Ll~AAk~l~~Ais~Llkaa~~~~~e~rq~ll~AA~~Vg~as~~~l~~i~e~~~d~~~~e~Li~aAKAVA~ATa~LV 202 (308)
T 1sj8_A 123 NGRPLLQAAKGLAGAVSELLRSAQPASAEPRQNLLQAAGNVGQASGELLQQIGESDTDPHFQDVLMQLANAVASAAAALV 202 (308)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHCTTCCSCTHHHHHHHHHHHHHHHHHHHHTTCCCSCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHhCCccccchHHHHHHHHHhHhHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 3567999999999999999999988433 12388899999988876663 33221 134556666677777788777
Q ss_pred HHhhhhHHh------HHHHHHHHHHHHHHHHHhhhhc
Q psy13624 156 AECAQLEGS------AERVRSCAYNMAKANKQLLTQF 186 (187)
Q Consensus 156 ~eC~~~q~~------t~qv~~cAYdIAKAaK~LvT~f 186 (187)
..++.+... =++||..|-++|.+|-|||+.+
T Consensus 203 ~~Ak~Va~~~~d~e~Q~~lI~AA~~~A~sTsQLVA~s 239 (308)
T 1sj8_A 203 LKAKSVAQRTEDSGLQTQVIAAATQCALSTSQLVACT 239 (308)
T ss_dssp HHHHHHHTSCTTSSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777665221 3589999999999999999864
No 9
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=89.85 E-value=0.51 Score=34.42 Aligned_cols=32 Identities=19% Similarity=0.383 Sum_probs=26.3
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy13624 4 EAHITHLNNEIAKLKTQVQQVIGENETLKAAL 35 (187)
Q Consensus 4 ea~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~ 35 (187)
|+|||.+-+.|..||.+|+.|..+|..|....
T Consensus 12 E~KIq~avdtI~lLqmEieELKekN~~L~~e~ 43 (81)
T 2jee_A 12 EAKVQQAIDTITLLQMEIEELKEKNNSLSQEV 43 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999988888888888888888876543
No 10
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=89.78 E-value=0.27 Score=33.24 Aligned_cols=32 Identities=16% Similarity=0.254 Sum_probs=20.7
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy13624 4 EAHITHLNNEIAKLKTQVQQVIGENETLKAAL 35 (187)
Q Consensus 4 ea~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~ 35 (187)
|.++.+|..+...|+.+|..|..|+..||..+
T Consensus 28 e~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l 59 (62)
T 1jnm_A 28 EEKVKTLKAQNSELASTANMLREQVAQLKQKV 59 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555777777777777777777777777554
No 11
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=89.44 E-value=0.57 Score=31.28 Aligned_cols=33 Identities=33% Similarity=0.503 Sum_probs=29.4
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHhhhHHHHHHHh
Q psy13624 4 EAHITHLNNEIAKLKTQVQQVIGENETLKAALN 36 (187)
Q Consensus 4 ea~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~~ 36 (187)
.+.+..|+.|+..||.+++.|..++.+|++.+.
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456678999999999999999999999998774
No 12
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=89.38 E-value=0.73 Score=29.91 Aligned_cols=32 Identities=25% Similarity=0.453 Sum_probs=28.7
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy13624 4 EAHITHLNNEIAKLKTQVQQVIGENETLKAAL 35 (187)
Q Consensus 4 ea~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~ 35 (187)
|++..+|..-+.+|...|.-|+.||.-||+.+
T Consensus 9 E~r~k~le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 9 ENRVKDLENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 67778999999999999999999999999765
No 13
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=89.21 E-value=0.57 Score=34.33 Aligned_cols=37 Identities=22% Similarity=0.291 Sum_probs=29.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhhhHHHHHHHhhcCCC
Q psy13624 5 AHITHLNNEIAKLKTQVQQVIGENETLKAALNARNSA 41 (187)
Q Consensus 5 a~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~~~~~~~ 41 (187)
.++..|..|...|+.+|+.|..|+..||..+.+.|++
T Consensus 43 ~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~~ 79 (87)
T 1hjb_A 43 HKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPEP 79 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHH
Confidence 3455899999999999999999999999998776643
No 14
>3dyj_A Talin-1; helix bundles, cytoskeletal protein, integrin-bindin site, IBS2, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane; 1.85A {Mus musculus} PDB: 4dj9_B
Probab=88.46 E-value=3.9 Score=36.47 Aligned_cols=100 Identities=13% Similarity=0.121 Sum_probs=66.6
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHhccCCCCCCccchHHHHHHHHHHHHhhcC---CCCC-chHHHHHHHHhhhhhHHHHH
Q psy13624 81 PQSEEVVRRTDQVTKRIQELAAHMRSSDKCHSFVPHAERIRIAVSELSAIFP---QNTN-NDLIRHALRSLNTSTVRLQA 156 (187)
Q Consensus 81 P~~e~Vir~TE~vT~~IqeLl~aaq~~~~~~~fvpcae~I~~AV~el~alFP---~~~~-~e~vr~~L~~L~~~a~~Lq~ 156 (187)
..+|+|||.|.-||..+-.++.+.+.+.+ ++.+..+-.-|.+|.+|+.--. -.+. ++++|... ..+....-.
T Consensus 209 ~tpE~li~~ak~vt~atakaVaA~ns~~q-eDii~aan~~r~aV~dll~~~k~aa~~~~~~~e~r~~~---~~~~k~~a~ 284 (332)
T 3dyj_A 209 STPEDFIRMTKGITMATAKAVAAGNSCRQ-EDVIATANLSRRAIADMLRACKEAAFHPEVAPDVRLRA---LHYGRECAN 284 (332)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHHHHHHHTSTTSCHHHHHHH---HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCH-HHHHHHHHhHHHHHHHHHHHHHHHHhccCCCHHHHHHH---HHHHHHHHH
Confidence 46999999999999999999999987555 9999999999999999987542 1122 44444322 111111111
Q ss_pred Hhhhh------------HHhHHHHHHHHHHHHHHHHHhhh
Q psy13624 157 ECAQL------------EGSAERVRSCAYNMAKANKQLLT 184 (187)
Q Consensus 157 eC~~~------------q~~t~qv~~cAYdIAKAaK~LvT 184 (187)
.+..+ .-.=+++-.++-.||.+.-.||+
T Consensus 285 ~~~~LL~~v~~~~~~P~~~~k~~L~~~Sr~VA~aVteLV~ 324 (332)
T 3dyj_A 285 GYLELLDHVLLTLQKPNPDLKQQLTGHSKRVAGSVTELIQ 324 (332)
T ss_dssp HHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 01245677788888888777775
No 15
>3t6g_B Breast cancer anti-estrogen resistance protein 1; CDC25-homology domain, GTPase exchange factor, focal-adhesio targeting domain, signaling protein; 2.50A {Homo sapiens}
Probab=88.12 E-value=3.7 Score=35.02 Aligned_cols=100 Identities=9% Similarity=0.156 Sum_probs=71.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCCCCCCccchHHHHHHHHHHHH---hhcCCCCCchHHHHHHHHhhhhhHHHHHHhhhh
Q psy13624 85 EVVRRTDQVTKRIQELAAHMRSSDKCHSFVPHAERIRIAVSELS---AIFPQNTNNDLIRHALRSLNTSTVRLQAECAQL 161 (187)
Q Consensus 85 ~Vir~TE~vT~~IqeLl~aaq~~~~~~~fvpcae~I~~AV~el~---alFP~~~~~e~vr~~L~~L~~~a~~Lq~eC~~~ 161 (187)
-.......++++|-.|+..++.+.-+..||++|-.|..+-.+|+ .-.=..-....||.-+....+.-.-+...|-..
T Consensus 107 Qc~s~~~~L~~AIdaF~~sv~~nQPP~iFVahsK~VIlsAHKLVfIGDTL~r~~~~~dvr~~Vl~~sn~Lc~~LK~~VlA 186 (229)
T 3t6g_B 107 QCEANLTTLTNAVDAFFTAVATNQPPKIFVAHSKFVILSAHKLVFIGDTLSRQAKAADVRSQVTHYSNLLCDLLRGIVAT 186 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCchhhHhcCCEEEEEeeeeeeecchHHHhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556788999999999999987666899999999999999998 555444566677765543333222233333111
Q ss_pred ----------HHhHHHHHHHHHHHHHHHHHhhh
Q psy13624 162 ----------EGSAERVRSCAYNMAKANKQLLT 184 (187)
Q Consensus 162 ----------q~~t~qv~~cAYdIAKAaK~LvT 184 (187)
-.++++..+++-+|+..|.++=+
T Consensus 187 TK~AAl~YPS~~AlQeMvd~v~eLs~~Aqqfr~ 219 (229)
T 3t6g_B 187 TKAAALQYPSPSAAQDMVERVKELGHSTQQFRR 219 (229)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11499999999999999987643
No 16
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=87.60 E-value=0.59 Score=33.56 Aligned_cols=35 Identities=23% Similarity=0.302 Sum_probs=27.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhhhHHHHHHHhhcC
Q psy13624 5 AHITHLNNEIAKLKTQVQQVIGENETLKAALNARN 39 (187)
Q Consensus 5 a~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~~~~~ 39 (187)
.++..|..|...|+.+|+.|..|+..||..+.+.|
T Consensus 43 ~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~q~p 77 (78)
T 1gu4_A 43 HKVLELTAENERLQKKVEQLSRELSTLRNLFKQLP 77 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 35558999999999999999999999997775543
No 17
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=87.00 E-value=0.91 Score=27.60 Aligned_cols=26 Identities=19% Similarity=0.364 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy13624 9 HLNNEIAKLKTQVQQVIGENETLKAA 34 (187)
Q Consensus 9 ~l~~ei~~Lq~~i~~L~~EN~~Lk~~ 34 (187)
.|.+++|+|++.|++||.-..-|...
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~t 28 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEET 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999999988887643
No 18
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=86.62 E-value=0.89 Score=32.03 Aligned_cols=33 Identities=24% Similarity=0.395 Sum_probs=27.3
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHhhhHHHHHHHh
Q psy13624 4 EAHITHLNNEIAKLKTQVQQVIGENETLKAALN 36 (187)
Q Consensus 4 ea~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~~ 36 (187)
+..|.+|+.++..|....+.|..||..|+.++.
T Consensus 28 ~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~ 60 (70)
T 1gd2_E 28 EDHLKALETQVVTLKELHSSTTLENDQLRQKVR 60 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788999999999888888999998886554
No 19
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=86.26 E-value=1.2 Score=30.08 Aligned_cols=31 Identities=29% Similarity=0.471 Sum_probs=22.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy13624 5 AHITHLNNEIAKLKTQVQQVIGENETLKAAL 35 (187)
Q Consensus 5 a~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~ 35 (187)
.++..|+.+...|+.+|..|+.|...|+..+
T Consensus 30 ~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 30 AETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445777777777777777777777777655
No 20
>1tr2_A Vinculin isoform 1; actin-binding, cell adhesion; 2.90A {Homo sapiens} PDB: 1st6_A
Probab=84.58 E-value=1.8 Score=43.18 Aligned_cols=103 Identities=15% Similarity=0.243 Sum_probs=70.6
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHhcc-CCCCCCccchHHHHHHHHHHHHhh---cCCCCCchHHHHH----HHHhhhhhHH
Q psy13624 82 QSEEVVRRTDQVTKRIQELAAHMRS-SDKCHSFVPHAERIRIAVSELSAI---FPQNTNNDLIRHA----LRSLNTSTVR 153 (187)
Q Consensus 82 ~~e~Vir~TE~vT~~IqeLl~aaq~-~~~~~~fvpcae~I~~AV~el~al---FP~~~~~e~vr~~----L~~L~~~a~~ 153 (187)
..+|+|+++..++.-.-++-..+.+ |+.+.+++.||..|..++.+|..+ |-..+.+..+|.- ++.+..-...
T Consensus 915 ~~ndiI~~AK~ma~~m~~m~~~~~g~~~~~~d~i~~Ak~ia~~~~~l~~~~r~~a~~~~d~~~k~~ll~~~~~i~~~~~Q 994 (1066)
T 1tr2_A 915 KGNDIIAAAKRMALLMAEMSRLVRGGSGTKRALIQCAKDIAKASDEVTRLAKEVAKQCTDKRIRTNLLQVCERIPTISTQ 994 (1066)
T ss_dssp TTCHHHHHHHHHHHHHHTHHHHTSCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTBCBHHHHHHHHHHHTHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhHHhHH
Confidence 4679999999999999888888873 334489999999999999888753 3333334454443 3333333323
Q ss_pred HHHHhh--hh----H--------HhHHHHHHHHHHHHHHHHHhhh
Q psy13624 154 LQAECA--QL----E--------GSAERVRSCAYNMAKANKQLLT 184 (187)
Q Consensus 154 Lq~eC~--~~----q--------~~t~qv~~cAYdIAKAaK~LvT 184 (187)
|+-=+. .. + -.++++++||=+++.+-+++|.
T Consensus 995 L~ils~VKa~~~g~~~~~~~~~~~a~~~Li~~aknLm~aV~~~V~ 1039 (1066)
T 1tr2_A 995 LKILSTVKATMLGRTNISDEESEQATEMLVHNAQNLMQSVKETVR 1039 (1066)
T ss_dssp HHHHHHHHHHTSSCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 333221 11 1 2378999999999999999985
No 21
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=84.02 E-value=0.67 Score=35.61 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHh
Q psy13624 14 IAKLKTQVQQVIGENETLKAALN 36 (187)
Q Consensus 14 i~~Lq~~i~~L~~EN~~Lk~~~~ 36 (187)
..+|..++++|+-||..||.++.
T Consensus 10 ~EeLaaeL~kLqmENK~LKkkl~ 32 (110)
T 2oa5_A 10 YEEMVKEVERLKLENKTLKQKVK 32 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 35788999999999999998774
No 22
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=82.71 E-value=2.3 Score=29.81 Aligned_cols=32 Identities=13% Similarity=0.193 Sum_probs=27.7
Q ss_pred HHhHHHHHHHHHHHHHHHHhhhHHHHHHHhhc
Q psy13624 7 ITHLNNEIAKLKTQVQQVIGENETLKAALNAR 38 (187)
Q Consensus 7 iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~~~~ 38 (187)
|..|..++..|+.+++.|..+|..|+.++..-
T Consensus 49 I~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 49 IQYMRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55889999999999999999999999888654
No 23
>1qkr_A Vinculin, tail domain; actin cytoskeleton, cell adhesion, helical bundle, lipid binding; 1.8A {Gallus gallus} SCOP: a.24.9.1 PDB: 3h2u_A 3h2v_A 1rke_B 3myi_A
Probab=82.51 E-value=6.1 Score=32.56 Aligned_cols=103 Identities=12% Similarity=0.173 Sum_probs=71.8
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHhccC-CCCCCccchHHHHHHHHHHHHh-------hcCCCCCchHHHHHHHHhhhhhHH
Q psy13624 82 QSEEVVRRTDQVTKRIQELAAHMRSS-DKCHSFVPHAERIRIAVSELSA-------IFPQNTNNDLIRHALRSLNTSTVR 153 (187)
Q Consensus 82 ~~e~Vir~TE~vT~~IqeLl~aaq~~-~~~~~fvpcae~I~~AV~el~a-------lFP~~~~~e~vr~~L~~L~~~a~~ 153 (187)
...|+|+.+..+..-.-++-...++. +.+.+++.||+.|..+..+|.. --|.......+-..|+.+..-...
T Consensus 37 ~~NdII~~Ak~Ma~~m~~M~~ftrG~g~t~~dlI~~Ak~iAe~~~~l~k~ar~iA~qc~D~~~k~~Ll~~~~rI~t~~~Q 116 (188)
T 1qkr_A 37 KGNDIIAAAKRMALLMAEMSRLVRGGSGNKRALIQCAKDIAKASDEVTRLAKEVAKQCTDKRIRTNLLQVCERIPTISTQ 116 (188)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhhHHHHH
Confidence 35678887766666666666666632 3347899999999888766653 335555566666667777777777
Q ss_pred HHHHhh--hhH------------HhHHHHHHHHHHHHHHHHHhhh
Q psy13624 154 LQAECA--QLE------------GSAERVRSCAYNMAKANKQLLT 184 (187)
Q Consensus 154 Lq~eC~--~~q------------~~t~qv~~cAYdIAKAaK~LvT 184 (187)
|+-=|. +.. ..++++|+||=++-.+-+++|.
T Consensus 117 LkIls~VKA~~~g~~~~~~~~~~~a~e~LIq~AkNLM~aV~~tVk 161 (188)
T 1qkr_A 117 LKILSTVKATMLGRTNISDEESEQATEMLVHNAQNLMQSVKETVR 161 (188)
T ss_dssp HHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 776664 321 1278999999999999999885
No 24
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=81.80 E-value=1.4 Score=31.87 Aligned_cols=29 Identities=28% Similarity=0.308 Sum_probs=25.7
Q ss_pred HHhHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy13624 7 ITHLNNEIAKLKTQVQQVIGENETLKAAL 35 (187)
Q Consensus 7 iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~ 35 (187)
+.-|++.|..|...+.+|..||+-||.-.
T Consensus 17 VevLKe~I~EL~e~~~qLE~EN~~Lk~~a 45 (78)
T 1dip_A 17 VEILKEQIRELVEKNSQLERENTLLKTLA 45 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34799999999999999999999999644
No 25
>2l6f_A Focal adhesion kinase 1, linker1, paxillin, linke paxillin; FAT, FAK, LD2, LD4, fusion protein, chimera protei transferase,cell adhesion; NMR {Gallus gallus} PDB: 2l6g_A 2l6h_A
Probab=81.69 E-value=0.33 Score=41.14 Aligned_cols=101 Identities=19% Similarity=0.267 Sum_probs=65.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhccCCCCCCccchHHHHH-------HHHHHHHhhcCCCCCchHHHHH-------HHHhh
Q psy13624 83 SEEVVRRTDQVTKRIQELAAHMRSSDKCHSFVPHAERIR-------IAVSELSAIFPQNTNNDLIRHA-------LRSLN 148 (187)
Q Consensus 83 ~e~Vir~TE~vT~~IqeLl~aaq~~~~~~~fvpcae~I~-------~AV~el~alFP~~~~~e~vr~~-------L~~L~ 148 (187)
-|.|...|-.|.|.+-+|=.-++..+. +.|++|-..|. .+|.++...||... -.+|.-+ ++.|.
T Consensus 8 nD~VY~att~VVKAV~~LSq~I~~a~p-eeYv~lVK~VGl~LR~LL~sVDel~~~Lp~Sa-~rEIEma~KvLnKDM~ELI 85 (215)
T 2l6f_A 8 NDKVYENVTGLVKAVIEMSSKIQPAPP-EEYVPMVKEVGLALRTLLATVDESLPVLPAST-HREIEMAQKLLNSDLAELI 85 (215)
Confidence 578888888888888888888887555 89999986554 45666667888544 1222222 33333
Q ss_pred hhhHHHHHHhhhh-HH-hHHHHHHHHHHHHHHHHHhhhh
Q psy13624 149 TSTVRLQAECAQL-EG-SAERVRSCAYNMAKANKQLLTQ 185 (187)
Q Consensus 149 ~~a~~Lq~eC~~~-q~-~t~qv~~cAYdIAKAaK~LvT~ 185 (187)
+.-...|.-|... +. .=.++...||-+|..+|.|+..
T Consensus 86 saMKLaqq~~~TtL~~EyRK~MLsaaH~LAmdaKNLlDv 124 (215)
T 2l6f_A 86 NKMKLAQQYVMTSLQQEYKKQMLTAAHALAVDAKNLLDV 124 (215)
Confidence 3333334333221 11 1246788999999999999864
No 26
>2jsw_A Talin-1; C-terminal actin binding site, ABS3, thatch domain, cytoskeleton, phosphorylation, structural protein, actin- binding protein; NMR {Mus musculus}
Probab=77.84 E-value=7.2 Score=32.11 Aligned_cols=106 Identities=12% Similarity=0.234 Sum_probs=73.0
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHhcc--------CCCCC--Cc-----------cchHHHHHHHHHHHH----hhcCC
Q psy13624 79 RMPQSEEVVRRTDQVTKRIQELAAHMRS--------SDKCH--SF-----------VPHAERIRIAVSELS----AIFPQ 133 (187)
Q Consensus 79 ~~P~~e~Vir~TE~vT~~IqeLl~aaq~--------~~~~~--~f-----------vpcae~I~~AV~el~----alFP~ 133 (187)
.+.+-|.+....-.|+..|..|+.++.. |+... .| +..|..+..+.+-|. .++-.
T Consensus 45 ~l~v~e~IL~aa~~i~~Ai~~Lv~aA~~aQ~Eiv~~Gr~~~~~~fy~~n~~WtEGLiSAAKaVa~at~~LveaAd~vv~g 124 (189)
T 2jsw_A 45 SLNFEEQILEAAKSIAAATSALVKAASAAQRELVAQGKVGAIPANALDDGQWSQGLISAARMVAAATNNLCEAANAAVQG 124 (189)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3677889999999999999999998876 43211 22 233344444555444 45545
Q ss_pred CCCchHHHHHHHHhhhhhHHHHHHhhhh----HHhHHHHHHHHHHHHHHHHHhhh
Q psy13624 134 NTNNDLIRHALRSLNTSTVRLQAECAQL----EGSAERVRSCAYNMAKANKQLLT 184 (187)
Q Consensus 134 ~~~~e~vr~~L~~L~~~a~~Lq~eC~~~----q~~t~qv~~cAYdIAKAaK~LvT 184 (187)
....|.+-.+-+...++|..|.+-|..- ....+++-.++-.|-+|++.||.
T Consensus 125 ~~~~E~LIvaa~eVAAsTaQLvaAsrVKa~~~S~~q~~L~~Ask~V~~a~~~LV~ 179 (189)
T 2jsw_A 125 HASQEKLISSAKQVAASTAQLLVACKVKADQDSEAMKRLQAAGNAVKRASDNLVK 179 (189)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHTTTSCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567888888888888888888888332 23467777777778888777775
No 27
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=77.42 E-value=3.2 Score=29.40 Aligned_cols=30 Identities=30% Similarity=0.353 Sum_probs=26.4
Q ss_pred HHhHHHHHHHHHHHHHHHHhhhHHHHHHHh
Q psy13624 7 ITHLNNEIAKLKTQVQQVIGENETLKAALN 36 (187)
Q Consensus 7 iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~~ 36 (187)
|..|.++.+.|+.+++.|..||..|+.++.
T Consensus 49 I~~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 49 IKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 668999999999999999999999998764
No 28
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=75.26 E-value=3.6 Score=28.02 Aligned_cols=25 Identities=16% Similarity=0.422 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHh
Q psy13624 12 NEIAKLKTQVQQVIGENETLKAALN 36 (187)
Q Consensus 12 ~ei~~Lq~~i~~L~~EN~~Lk~~~~ 36 (187)
+.+..|+.+|..|..||..|+..+.
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~ 54 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVA 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666665443
No 29
>1sj8_A Talin 1; structural protein; 2.60A {Mus musculus} SCOP: a.215.1.1 a.216.1.1
Probab=74.14 E-value=20 Score=31.61 Aligned_cols=92 Identities=16% Similarity=0.169 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHhccC-CCCCCccchHHHHHHHHHHHHhhcCCCCCch----HHHHHHHHhhhhhHHHHHHhhh---hHH
Q psy13624 92 QVTKRIQELAAHMRSS-DKCHSFVPHAERIRIAVSELSAIFPQNTNND----LIRHALRSLNTSTVRLQAECAQ---LEG 163 (187)
Q Consensus 92 ~vT~~IqeLl~aaq~~-~~~~~fvpcae~I~~AV~el~alFP~~~~~e----~vr~~L~~L~~~a~~Lq~eC~~---~q~ 163 (187)
.++++++.|-.-+-+. ...+....++..|-.||.+|+. .-.|..+ .|-.+=.....++..+-.-|.. -..
T Consensus 105 e~~~~vk~laaL~~d~~~~~~~Ll~AAk~l~~Ais~Llk--aa~~~~~e~rq~ll~AA~~Vg~as~~~l~~i~e~~~d~~ 182 (308)
T 1sj8_A 105 EMSRGVKLLAALLEDEGGNGRPLLQAAKGLAGAVSELLR--SAQPASAEPRQNLLQAAGNVGQASGELLQQIGESDTDPH 182 (308)
T ss_dssp HHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHHHHHHHHH--HHCTTCCSCTHHHHHHHHHHHHHHHHHHHHTTCCCSCTT
T ss_pred HHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHHHH--hCCccccchHHHHHHHHHhHhHHHHHHHHhcCccccchH
Confidence 3455555443333333 2435799999999999999954 2233222 3555555555555545433321 133
Q ss_pred hHHHHHHHHHHHHHHHHHhhhh
Q psy13624 164 SAERVRSCAYNMAKANKQLLTQ 185 (187)
Q Consensus 164 ~t~qv~~cAYdIAKAaK~LvT~ 185 (187)
..+++++.|-.||.|+-.||..
T Consensus 183 ~~e~Li~aAKAVA~ATa~LV~~ 204 (308)
T 1sj8_A 183 FQDVLMQLANAVASAAAALVLK 204 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5889999999999999999863
No 30
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=72.25 E-value=5.5 Score=28.57 Aligned_cols=31 Identities=26% Similarity=0.264 Sum_probs=26.9
Q ss_pred HHhHHHHHHHHHHHHHHHHhhhHHHHHHHhh
Q psy13624 7 ITHLNNEIAKLKTQVQQVIGENETLKAALNA 37 (187)
Q Consensus 7 iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~~~ 37 (187)
|+.|..+...|+.+++.|..+|.+|+.++..
T Consensus 54 I~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~ 84 (88)
T 1nkp_A 54 ILSVQAEEQKLISEEDLLRKRREQLKHKLEQ 84 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688888899999999999999999987755
No 31
>2x0c_A Talin-1; cytoskeleton, cell membrane, actin, synemin, integrin, vincu cell adhesion, cell projection; 2.00A {Mus musculus} PDB: 1zw3_B
Probab=68.87 E-value=25 Score=30.63 Aligned_cols=50 Identities=14% Similarity=0.164 Sum_probs=35.2
Q ss_pred CchHHHHHHHHhhhhhHHHHHHhhhh------HHhHHHHHHHHHHHHHHHHHhhhh
Q psy13624 136 NNDLIRHALRSLNTSTVRLQAECAQL------EGSAERVRSCAYNMAKANKQLLTQ 185 (187)
Q Consensus 136 ~~e~vr~~L~~L~~~a~~Lq~eC~~~------q~~t~qv~~cAYdIAKAaK~LvT~ 185 (187)
....|=.+-+.+..++..|-.+|+.. ...-+++.++|-+|+-++-.||..
T Consensus 137 ~q~~vL~~A~~va~~t~~L~~~cr~as~~~~n~~~k~ql~~~ak~va~st~~lV~~ 192 (309)
T 2x0c_A 137 TQAQVLSAATIVAKHTSALCNSCRLASARTANPTAKRQFVQSAKEVANSTANLVKT 192 (309)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhHHHHHHHHHHhcCcCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556677777777788888888644 113567888888888888777654
No 32
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=68.01 E-value=6.7 Score=26.53 Aligned_cols=27 Identities=22% Similarity=0.272 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHh
Q psy13624 10 LNNEIAKLKTQVQQVIGENETLKAALN 36 (187)
Q Consensus 10 l~~ei~~Lq~~i~~L~~EN~~Lk~~~~ 36 (187)
-++++..|..+++.|..+|..|+..++
T Consensus 21 Kk~~~~~le~~~~~L~~~N~~L~~~i~ 47 (63)
T 1ci6_A 21 KRAEQEALTGECKELEKKNEALKERAD 47 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777788888888888876554
No 33
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=67.96 E-value=7 Score=25.88 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHh
Q psy13624 14 IAKLKTQVQQVIGENETLKAALN 36 (187)
Q Consensus 14 i~~Lq~~i~~L~~EN~~Lk~~~~ 36 (187)
+..|...|..|..||..|+.++.
T Consensus 24 ~~~LE~~v~~L~~eN~~L~~~~~ 46 (55)
T 1dh3_A 24 VKSLENRVAVLENQNKTLIEELK 46 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666665443
No 34
>3vf0_A Vinculin, metavinculin; cytoskeletal F-actin binding protein, CEL adhesion-protein binding complex; HET: EPE; 2.54A {Homo sapiens}
Probab=67.45 E-value=28 Score=30.44 Aligned_cols=104 Identities=13% Similarity=0.208 Sum_probs=73.0
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHhccC-CCCCCccchHHHHHHHHHHHHh---hcCCCCCch----HHHHHHHHhhhhhH
Q psy13624 81 PQSEEVVRRTDQVTKRIQELAAHMRSS-DKCHSFVPHAERIRIAVSELSA---IFPQNTNND----LIRHALRSLNTSTV 152 (187)
Q Consensus 81 P~~e~Vir~TE~vT~~IqeLl~aaq~~-~~~~~fvpcae~I~~AV~el~a---lFP~~~~~e----~vr~~L~~L~~~a~ 152 (187)
....|+|+.+..+..-.-++-..++++ +.+.+++.||+.|..+..+|.. -|-+.+.+. .+-..|+++..-..
T Consensus 131 d~~NdII~~AK~MA~mM~~Ms~ftRGg~kTt~DLI~~AK~IAe~g~~l~k~ar~iA~qCtD~r~K~~LL~~lerIpti~~ 210 (283)
T 3vf0_A 131 SKGNDIIAAAKRMALLMAEMSRLVRGGSGTKRALIQCAKDIAKASDEVTRLAKEVAKQCTDKRIRTNLLQVCERIPTIST 210 (283)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTBCCHHHHHHHHHHHHTHHHHHH
T ss_pred cCCChHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHhhhhhHHH
Confidence 356788888888887777777777754 3337999999999987776654 455555444 44455666666666
Q ss_pred HHHHHhh--hh------------HHhHHHHHHHHHHHHHHHHHhhh
Q psy13624 153 RLQAECA--QL------------EGSAERVRSCAYNMAKANKQLLT 184 (187)
Q Consensus 153 ~Lq~eC~--~~------------q~~t~qv~~cAYdIAKAaK~LvT 184 (187)
.|+-=|. +. ...++++|+||=++-.+-+++|.
T Consensus 211 QLkIls~VKA~~lg~q~~s~~~~~sa~esLIqnAKNLM~aV~~tVk 256 (283)
T 3vf0_A 211 QLKILSTVKATMLGRTNISDEESEQATEMLVHNAQNLMQSVKETVR 256 (283)
T ss_dssp HHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665553 22 11377999999999999999885
No 35
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=67.34 E-value=7 Score=26.26 Aligned_cols=26 Identities=15% Similarity=0.284 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHh
Q psy13624 11 NNEIAKLKTQVQQVIGENETLKAALN 36 (187)
Q Consensus 11 ~~ei~~Lq~~i~~L~~EN~~Lk~~~~ 36 (187)
++.+..|+.++..|..+|..|+..+.
T Consensus 22 k~~~~~Le~~v~~L~~~n~~L~~ei~ 47 (63)
T 2wt7_A 22 RELTDTLQAETDQLEDEKSALQTEIA 47 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777777777777777776553
No 36
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=67.16 E-value=7.1 Score=25.83 Aligned_cols=30 Identities=30% Similarity=0.385 Sum_probs=25.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy13624 6 HITHLNNEIAKLKTQVQQVIGENETLKAAL 35 (187)
Q Consensus 6 ~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~ 35 (187)
.+.+|..++..|+.+...|..++..|+..+
T Consensus 23 ~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 23 YVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466899999999999999999999998655
No 37
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=66.90 E-value=5 Score=28.57 Aligned_cols=31 Identities=16% Similarity=0.183 Sum_probs=17.5
Q ss_pred HHhHHHHHHHHHHHHHHHHhhhHHHHHHHhh
Q psy13624 7 ITHLNNEIAKLKTQVQQVIGENETLKAALNA 37 (187)
Q Consensus 7 iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~~~ 37 (187)
|+...+.|+.|...|.....+...|+++++.
T Consensus 35 Lr~kd~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 35 LRQRDALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555666666666666666665544
No 38
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=66.30 E-value=7.7 Score=25.74 Aligned_cols=26 Identities=12% Similarity=0.211 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHh
Q psy13624 11 NNEIAKLKTQVQQVIGENETLKAALN 36 (187)
Q Consensus 11 ~~ei~~Lq~~i~~L~~EN~~Lk~~~~ 36 (187)
+..+..|+..+..|.++|..|+..+.
T Consensus 21 k~~~~~Le~~~~~L~~~n~~L~~~i~ 46 (61)
T 1t2k_D 21 KVWVQSLEKKAEDLSSLNGQLQSEVT 46 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667777777777777765543
No 39
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=66.27 E-value=4 Score=28.63 Aligned_cols=28 Identities=29% Similarity=0.364 Sum_probs=15.2
Q ss_pred hHHHHhHH-------HHHHHHHHHHHHHHhhhHHH
Q psy13624 4 EAHITHLN-------NEIAKLKTQVQQVIGENETL 31 (187)
Q Consensus 4 ea~iq~l~-------~ei~~Lq~~i~~L~~EN~~L 31 (187)
|.+|.+|. .|+..|+..|..|+.||..|
T Consensus 35 E~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 35 ETQVVTLKELHSSTTLENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45555554 45555555555555555554
No 40
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=66.17 E-value=8.1 Score=26.24 Aligned_cols=31 Identities=16% Similarity=0.293 Sum_probs=26.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy13624 5 AHITHLNNEIAKLKTQVQQVIGENETLKAAL 35 (187)
Q Consensus 5 a~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~ 35 (187)
.++.+|..++..|..+...|..|...|+.++
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566899999999999999999999999766
No 41
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=66.06 E-value=8.9 Score=26.20 Aligned_cols=26 Identities=27% Similarity=0.371 Sum_probs=22.2
Q ss_pred HHhHHHHHHHHHHHHHHHHhhhHHHH
Q psy13624 7 ITHLNNEIAKLKTQVQQVIGENETLK 32 (187)
Q Consensus 7 iq~l~~ei~~Lq~~i~~L~~EN~~Lk 32 (187)
++..+.||..|+..|+.|+.|...||
T Consensus 51 l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 51 LRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44678899999999999999988876
No 42
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=65.33 E-value=8 Score=25.81 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHH
Q psy13624 12 NEIAKLKTQVQQVIGENETLKAAL 35 (187)
Q Consensus 12 ~ei~~Lq~~i~~L~~EN~~Lk~~~ 35 (187)
+.+..|+..+..|..+|..|+..+
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v 45 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTA 45 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666544
No 43
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=64.72 E-value=10 Score=27.82 Aligned_cols=30 Identities=37% Similarity=0.400 Sum_probs=24.7
Q ss_pred HhHHHHHHHHHHHHHHHHhhhHHHHHHHhh
Q psy13624 8 THLNNEIAKLKTQVQQVIGENETLKAALNA 37 (187)
Q Consensus 8 q~l~~ei~~Lq~~i~~L~~EN~~Lk~~~~~ 37 (187)
.+|..+...|+.+++.|..||+.++...+.
T Consensus 51 ~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~ 80 (90)
T 2wt7_B 51 HHLENEKTQLIQQVEQLKQEVSRLARERDA 80 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 388899999999999999999988865543
No 44
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=64.59 E-value=8.6 Score=27.24 Aligned_cols=34 Identities=18% Similarity=0.142 Sum_probs=26.4
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHhhhHHHHHHHhh
Q psy13624 4 EAHITHLNNEIAKLKTQVQQVIGENETLKAALNA 37 (187)
Q Consensus 4 ea~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~~~ 37 (187)
|..|.+|++.+-+.|..|.+|+.+...|..++..
T Consensus 27 E~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~ 60 (78)
T 3efg_A 27 EQALTELSEALADARLTGARNAELIRHLLEDLGK 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556688888888899999999988888876644
No 45
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=63.69 E-value=9.9 Score=27.35 Aligned_cols=27 Identities=15% Similarity=0.214 Sum_probs=20.2
Q ss_pred HHhHHHHHHHHHHHHHHHHhhhHHHHH
Q psy13624 7 ITHLNNEIAKLKTQVQQVIGENETLKA 33 (187)
Q Consensus 7 iq~l~~ei~~Lq~~i~~L~~EN~~Lk~ 33 (187)
|+.|+.||..|+-.|+.++.+..+++.
T Consensus 29 l~~Lq~Ev~~LRGqiE~~~~~l~ql~~ 55 (83)
T 2xdj_A 29 LSDNQSDIDSLRGQIQENQYQLNQVVE 55 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 447777777777777888888888774
No 46
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=58.25 E-value=19 Score=22.49 Aligned_cols=20 Identities=20% Similarity=0.406 Sum_probs=8.2
Q ss_pred HHHhHHHHHHHHHHHHHHHH
Q psy13624 6 HITHLNNEIAKLKTQVQQVI 25 (187)
Q Consensus 6 ~iq~l~~ei~~Lq~~i~~L~ 25 (187)
|+.+|..+...|+.+|.+|.
T Consensus 9 KVEeLl~~~~~Le~eV~RLk 28 (36)
T 1kd8_B 9 KVEELKSKLWHLKNKVARLK 28 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHH
Confidence 33444444444444444433
No 47
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=56.07 E-value=22 Score=21.44 Aligned_cols=27 Identities=37% Similarity=0.415 Sum_probs=22.4
Q ss_pred HHhHHHHHHHHHHHHHHHHhhhHHHHH
Q psy13624 7 ITHLNNEIAKLKTQVQQVIGENETLKA 33 (187)
Q Consensus 7 iq~l~~ei~~Lq~~i~~L~~EN~~Lk~ 33 (187)
|--|+.||.-|+++|.-|.-|...||+
T Consensus 4 iaalkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 556888899999999888888888875
No 48
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=55.63 E-value=16 Score=22.94 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHH
Q psy13624 9 HLNNEIAKLKTQVQQVIGENETLK 32 (187)
Q Consensus 9 ~l~~ei~~Lq~~i~~L~~EN~~Lk 32 (187)
.|--+|..-+.+|.+|.+||.+|+
T Consensus 11 kLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 11 KLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHH
Confidence 456677788888999999999986
No 49
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=52.84 E-value=13 Score=26.01 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHh
Q psy13624 11 NNEIAKLKTQVQQVIGENETLKAALN 36 (187)
Q Consensus 11 ~~ei~~Lq~~i~~L~~EN~~Lk~~~~ 36 (187)
-+=|+.||..++.|..||..|+..+.
T Consensus 49 i~YI~~Lq~~~~~L~~e~~~L~~~~~ 74 (82)
T 1am9_A 49 IDYIRFLQHSNQKLKQENLSLRTAVH 74 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578888889999999999986554
No 50
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=52.64 E-value=23 Score=22.13 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=10.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhh
Q psy13624 5 AHITHLNNEIAKLKTQVQQVIGE 27 (187)
Q Consensus 5 a~iq~l~~ei~~Lq~~i~~L~~E 27 (187)
.|+.+|..+...|+.+|.+|.+.
T Consensus 8 ~kVEeLl~~~~~Le~EV~RL~~l 30 (36)
T 1kd8_A 8 AEVEEIESEVWHLENEVARLEKE 30 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 51
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=52.19 E-value=25 Score=22.20 Aligned_cols=26 Identities=19% Similarity=0.328 Sum_probs=21.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhhHHH
Q psy13624 6 HITHLNNEIAKLKTQVQQVIGENETL 31 (187)
Q Consensus 6 ~iq~l~~ei~~Lq~~i~~L~~EN~~L 31 (187)
++-+-+++|..|+++++.|+.|--+|
T Consensus 9 TLeEtkeQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 9 SLEETKEQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45578889999999999999887665
No 52
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=52.00 E-value=19 Score=22.14 Aligned_cols=18 Identities=22% Similarity=0.496 Sum_probs=8.8
Q ss_pred HHHHHHHHHHhhhHHHHH
Q psy13624 16 KLKTQVQQVIGENETLKA 33 (187)
Q Consensus 16 ~Lq~~i~~L~~EN~~Lk~ 33 (187)
+|..+|+.|-.+|+.|..
T Consensus 4 QLE~kVEeLl~~n~~Le~ 21 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLEN 21 (33)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHH
Confidence 344445555555555543
No 53
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=51.63 E-value=28 Score=24.70 Aligned_cols=33 Identities=18% Similarity=0.292 Sum_probs=25.6
Q ss_pred hhHHHHhHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy13624 3 SEAHITHLNNEIAKLKTQVQQVIGENETLKAAL 35 (187)
Q Consensus 3 Sea~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~ 35 (187)
-|..|.+|..+|.+.-..|..|++|-..+++.+
T Consensus 38 kd~~I~eLEk~L~ekd~eI~~LqseLDKfrSVl 70 (72)
T 3nmd_A 38 RDALIDELELELDQKDELIQMLQNELDKYRSVI 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 367788888888888888888888887777654
No 54
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=51.47 E-value=16 Score=27.27 Aligned_cols=30 Identities=20% Similarity=0.285 Sum_probs=15.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy13624 6 HITHLNNEIAKLKTQVQQVIGENETLKAAL 35 (187)
Q Consensus 6 ~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~ 35 (187)
.+..|+.+|..|..+..+|..++..|..++
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~L 42 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQL 42 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555444
No 55
>4f7g_B Talin-1; alpha-helix bundle, integrin activation, cell adhesion; 2.05A {Mus musculus} PDB: 2kbb_A 2kgx_A
Probab=49.48 E-value=41 Score=28.10 Aligned_cols=82 Identities=18% Similarity=0.174 Sum_probs=50.7
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHhccCCCCCCccchHHHHHHHHHHHHhhcCCCCCchHHHHHHHHhhhh--hHHHHHHhh
Q psy13624 82 QSEEVVRRTDQVTKRIQELAAHMRSSDKCHSFVPHAERIRIAVSELSAIFPQNTNNDLIRHALRSLNTS--TVRLQAECA 159 (187)
Q Consensus 82 ~~e~Vir~TE~vT~~IqeLl~aaq~~~~~~~fvpcae~I~~AV~el~alFP~~~~~e~vr~~L~~L~~~--a~~Lq~eC~ 159 (187)
+.++++..+..|-..|-.|..|+.. .+|.+..+|+.|..+||+.- ...+.+.-.+..+ -..|...|+
T Consensus 67 ~qeq~~~~~~eL~~~i~~l~~AAk~---------~~e~LG~av~~~a~~~epLv--~aa~gaAS~t~ds~~Q~~lLdq~K 135 (216)
T 4f7g_B 67 LHTQMLTAVQEISHLIEPLASAARA---------EASQLGHKVSQMAQYFEPLT--LAAVGAASKTLSHPQQMALLDQTK 135 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---------CHHHHHHHHHHHHHTHHHHH--HHHHHHHHHCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHhhhc---------CHHHHhHHHHHHHHHhHHHH--HHHHHHHHcCCChHHHHHHHHHHH
Confidence 3566666666666667777777665 48999999999999994332 2333333333333 122566677
Q ss_pred hhHHhHHHHHHHHHH
Q psy13624 160 QLEGSAERVRSCAYN 174 (187)
Q Consensus 160 ~~q~~t~qv~~cAYd 174 (187)
++--+..|++.+|-+
T Consensus 136 tv~es~lqlv~AaK~ 150 (216)
T 4f7g_B 136 TLAESALQLLYTAKE 150 (216)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 775556666655444
No 56
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=49.37 E-value=22 Score=26.90 Aligned_cols=21 Identities=19% Similarity=0.333 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHhhhHHHHH
Q psy13624 13 EIAKLKTQVQQVIGENETLKA 33 (187)
Q Consensus 13 ei~~Lq~~i~~L~~EN~~Lk~ 33 (187)
.|+.|..+|++|..||..|++
T Consensus 66 ~v~eLe~everL~~ENq~L~~ 86 (104)
T 3s9g_A 66 RVRELELELDRLRAENLQLLT 86 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666677776664
No 57
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=48.95 E-value=18 Score=26.35 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHH
Q psy13624 9 HLNNEIAKLKTQVQQVIGENETLK 32 (187)
Q Consensus 9 ~l~~ei~~Lq~~i~~L~~EN~~Lk 32 (187)
+|-.+|..|+.+|..|++||..||
T Consensus 50 ~Lh~~ie~l~eEi~~lk~en~eL~ 73 (83)
T 1uii_A 50 KLHKEIEQKDNEIARLKKENKELA 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566666666666666666666
No 58
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=48.34 E-value=38 Score=22.01 Aligned_cols=29 Identities=17% Similarity=0.378 Sum_probs=24.7
Q ss_pred hhHHHHhHHHHHHHHHHHHHHHHhhhHHH
Q psy13624 3 SEAHITHLNNEIAKLKTQVQQVIGENETL 31 (187)
Q Consensus 3 Sea~iq~l~~ei~~Lq~~i~~L~~EN~~L 31 (187)
-|.||..|...+..||+.+.+|-.|...-
T Consensus 3 lEekv~~Le~~ld~LqTr~ArLlae~~ss 31 (46)
T 3swy_A 3 LEEKVEQLGSSLDTLQTRFARLLAEYNAT 31 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999999998876543
No 59
>1u89_A Talin 1, talin; 4-helix bundle, LEFT-handed, structural protein; NMR {Mus musculus} SCOP: a.216.1.1
Probab=48.33 E-value=96 Score=24.24 Aligned_cols=100 Identities=17% Similarity=0.199 Sum_probs=68.2
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHhccC----CCCCCccchHHHHHHHHHHHHhhcCCCCCchHHHHHHHHhhhhhHHHHH
Q psy13624 81 PQSEEVVRRTDQVTKRIQELAAHMRSS----DKCHSFVPHAERIRIAVSELSAIFPQNTNNDLIRHALRSLNTSTVRLQA 156 (187)
Q Consensus 81 P~~e~Vir~TE~vT~~IqeLl~aaq~~----~~~~~fvpcae~I~~AV~el~alFP~~~~~e~vr~~L~~L~~~a~~Lq~ 156 (187)
+..-+|..-+..||+.+.+||..+... .....|-.-.+.|-.+-. .||-.-..++++-..-+.|.-++.+| .
T Consensus 12 ~~~~~l~~AA~~Vt~aL~dLL~hik~~~~~~~~~~~~~~~~d~Il~~t~---~l~~s~gd~~eMvrqak~Laqat~~L-V 87 (139)
T 1u89_A 12 QLLRGVGAAATAVTQALNELLQHVKAHATGAGPAGRYDQATDTILTVTE---NIFSSMGDAGEMVRQARILAQATSDL-V 87 (139)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHTTSSCCSSSCSCCHHHHHHHHHHHH---HHHHTTTTSHHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhhhHHHHHHHHHH---HHHHhcCCHHHHHHHHHHHHHHHHHH-H
Confidence 345578888999999999999999852 111223222244433333 35666677888888889999888888 4
Q ss_pred Hh-hhh------HHhHHHHHHHHHHHHHHHHHhhh
Q psy13624 157 EC-AQL------EGSAERVRSCAYNMAKANKQLLT 184 (187)
Q Consensus 157 eC-~~~------q~~t~qv~~cAYdIAKAaK~LvT 184 (187)
+| +.- --.-+.+..+|--||-||-.||-
T Consensus 88 ~~iK~eAe~~~D~~~q~rLL~AAk~lAdATa~mVe 122 (139)
T 1u89_A 88 NAIKADAEGESDLENSRKLLSAAKILADATAKMVE 122 (139)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45 321 11256788999999999888774
No 60
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=47.52 E-value=1.6 Score=33.20 Aligned_cols=31 Identities=29% Similarity=0.481 Sum_probs=25.5
Q ss_pred HHhHHHHHHHHHHHHHHHHhhhHHHHHHHhh
Q psy13624 7 ITHLNNEIAKLKTQVQQVIGENETLKAALNA 37 (187)
Q Consensus 7 iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~~~ 37 (187)
+.+|.+++..|+.+++.|..||..|+..++.
T Consensus 60 ~~~LE~e~~~L~~e~e~L~~En~~l~~E~~~ 90 (107)
T 3a5t_A 60 KEELEKQKAELQQEVEKLASENASMKLELDA 90 (107)
T ss_dssp HHHHHHHHTTTSSTTTTTTSTTSHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4488888888899999999999999876654
No 61
>1xwj_B Talin, metavinculin; cell adhesion/protein binding complex; 2.60A {Gallus gallus} PDB: 1rkc_B
Probab=46.59 E-value=23 Score=20.06 Aligned_cols=22 Identities=14% Similarity=0.466 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHhc
Q psy13624 84 EEVVRRTDQVTKRIQELAAHMR 105 (187)
Q Consensus 84 e~Vir~TE~vT~~IqeLl~aaq 105 (187)
-++.++...|+..|.+++.+.|
T Consensus 4 ~el~~~~r~v~ekV~~vlaaLq 25 (26)
T 1xwj_B 4 KELIESARKVSEKVSHVLAALQ 25 (26)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4788999999999999999876
No 62
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=46.14 E-value=33 Score=24.77 Aligned_cols=12 Identities=33% Similarity=0.321 Sum_probs=7.1
Q ss_pred HHhhhHHHHHHH
Q psy13624 24 VIGENETLKAAL 35 (187)
Q Consensus 24 L~~EN~~Lk~~~ 35 (187)
|..||.+||...
T Consensus 53 L~~en~qLk~E~ 64 (81)
T 2jee_A 53 LERENNHLKEQQ 64 (81)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555666676443
No 63
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=45.94 E-value=24 Score=20.42 Aligned_cols=24 Identities=33% Similarity=0.538 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHH
Q psy13624 9 HLNNEIAKLKTQVQQVIGENETLK 32 (187)
Q Consensus 9 ~l~~ei~~Lq~~i~~L~~EN~~Lk 32 (187)
.|++|+-+|+-++.-|..|...||
T Consensus 4 qlkdevgelkgevralkdevkdlk 27 (27)
T 3v86_A 4 QLKDEVGELKGEVRALKDEVKDLK 27 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhHHHHHHHhHHHHHHHHHhccC
Confidence 567777777777777777766553
No 64
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=45.79 E-value=27 Score=21.43 Aligned_cols=15 Identities=7% Similarity=0.073 Sum_probs=6.1
Q ss_pred HHHHHHHHHhhhHHH
Q psy13624 17 LKTQVQQVIGENETL 31 (187)
Q Consensus 17 Lq~~i~~L~~EN~~L 31 (187)
|..+|+.|.++|+.|
T Consensus 5 LEdKVEell~~~~~l 19 (33)
T 2wq1_A 5 LEDKIEENTSKIYHN 19 (33)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHH
Confidence 333444444444443
No 65
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=45.63 E-value=15 Score=28.05 Aligned_cols=28 Identities=32% Similarity=0.478 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHhhc
Q psy13624 11 NNEIAKLKTQVQQVIGENETLKAALNAR 38 (187)
Q Consensus 11 ~~ei~~Lq~~i~~L~~EN~~Lk~~~~~~ 38 (187)
+.||..||.+|+++.+.|.-||..++.+
T Consensus 3 ~~e~~~l~~qi~~~ekr~~RLKevF~~k 30 (123)
T 4dzo_A 3 SKEVAELKKQVESAELKNQRLKEVFQTK 30 (123)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3588999999999999999999777653
No 66
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=45.18 E-value=14 Score=25.62 Aligned_cols=22 Identities=14% Similarity=0.154 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHhhhHHHHH
Q psy13624 12 NEIAKLKTQVQQVIGENETLKA 33 (187)
Q Consensus 12 ~ei~~Lq~~i~~L~~EN~~Lk~ 33 (187)
+=|..|+..++.|..|+..|+.
T Consensus 57 ~YI~~L~~~~~~L~~e~~~L~~ 78 (80)
T 1hlo_A 57 EYIQYMRRKNHTHQQDIDDLKR 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4466777777777777777764
No 67
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=44.20 E-value=33 Score=26.59 Aligned_cols=29 Identities=28% Similarity=0.441 Sum_probs=16.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhhhHHHHH
Q psy13624 5 AHITHLNNEIAKLKTQVQQVIGENETLKA 33 (187)
Q Consensus 5 a~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~ 33 (187)
++|++|..||..|..+++....|...||.
T Consensus 71 ~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~ 99 (121)
T 3mq7_A 71 KKVEELEGEITTLNHKLQDASAEVERLRR 99 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34666666666666655555555555543
No 68
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=43.61 E-value=12 Score=26.70 Aligned_cols=25 Identities=20% Similarity=0.409 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHhh
Q psy13624 13 EIAKLKTQVQQVIGENETLKAALNA 37 (187)
Q Consensus 13 ei~~Lq~~i~~L~~EN~~Lk~~~~~ 37 (187)
||+.|+.+|..++.+|..|-.+++.
T Consensus 1 Ei~eLr~qi~~l~~e~~~l~~e~dn 25 (86)
T 3swk_A 1 EMRELRRQVDQLTNDKARVEVERDN 25 (86)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4678888888888888888765544
No 69
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=43.37 E-value=24 Score=25.42 Aligned_cols=27 Identities=22% Similarity=0.385 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy13624 9 HLNNEIAKLKTQVQQVIGENETLKAAL 35 (187)
Q Consensus 9 ~l~~ei~~Lq~~i~~L~~EN~~Lk~~~ 35 (187)
+|-.+|..++.+|..|..||..|+...
T Consensus 38 ~Lh~~ie~~~eEi~~LkeEN~~L~el~ 64 (79)
T 2zxx_A 38 KLHKEIEQKDSEIARLRKENKDLAEVA 64 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777888888888888887544
No 70
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=43.33 E-value=22 Score=25.94 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHH
Q psy13624 9 HLNNEIAKLKTQVQQVIGENETLKA 33 (187)
Q Consensus 9 ~l~~ei~~Lq~~i~~L~~EN~~Lk~ 33 (187)
+|-.+|..++.+|..|+.||.+|+.
T Consensus 42 ~Lh~~ie~~~eEi~~Lk~en~~L~e 66 (83)
T 1wlq_A 42 KLHKEIEQKDSEIARLRKENKDLAE 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777777788888888873
No 71
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=42.24 E-value=22 Score=23.13 Aligned_cols=20 Identities=45% Similarity=0.627 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHhhhHHHHH
Q psy13624 14 IAKLKTQVQQVIGENETLKA 33 (187)
Q Consensus 14 i~~Lq~~i~~L~~EN~~Lk~ 33 (187)
+.+|..+|.+|..||..||.
T Consensus 5 vaqlenevaslenenetlkk 24 (49)
T 3he5_A 5 VAQLENEVASLENENETLKK 24 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccHHHHH
Confidence 45677888888888888884
No 72
>2l10_A Talin-1; helical bundle, cytoskeleton, focal adhesion, structu protein; NMR {Mus musculus}
Probab=42.14 E-value=1.1e+02 Score=24.25 Aligned_cols=103 Identities=15% Similarity=0.180 Sum_probs=76.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhccCC-----CCCCccchHHHHHHHHHHHHhhcCCCCCchHHHHHHHHhhhhhHHHHHHh
Q psy13624 84 EEVVRRTDQVTKRIQELAAHMRSSD-----KCHSFVPHAERIRIAVSELSAIFPQNTNNDLIRHALRSLNTSTVRLQAEC 158 (187)
Q Consensus 84 e~Vir~TE~vT~~IqeLl~aaq~~~-----~~~~fvpcae~I~~AV~el~alFP~~~~~e~vr~~L~~L~~~a~~Lq~eC 158 (187)
+++....+.+....-+|..++.+.. ....|+.+=++...++.+|+.-.|.....+.|-..|+.+..++..|...=
T Consensus 41 ~eL~~aA~~Ln~A~~~vv~aargsp~~La~as~~f~~~~~~l~~ag~~mag~~~~~~~r~~iv~~L~~vs~~s~~LL~~a 120 (158)
T 2l10_A 41 SRLNEAAAGLNQAATELVQASRGTPQDLARASGRFGQDFSTFLEAGVEMAGQAPSQEDRAQVVSNLKGISMSSSKLLLAA 120 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666667778888888888877432 11346666666777788899999866666778888999998888877666
Q ss_pred hhh------HHhHHHHHHHHHHHHHHHHHhhhhc
Q psy13624 159 AQL------EGSAERVRSCAYNMAKANKQLLTQF 186 (187)
Q Consensus 159 ~~~------q~~t~qv~~cAYdIAKAaK~LvT~f 186 (187)
+.+ ...-+++-.+|-.|.-+..+||+..
T Consensus 121 k~~~~dp~~pn~~~~L~sAaR~VtesIN~Lv~~c 154 (158)
T 2l10_A 121 KALSTDPASPNLKSQLAAAARAVTDSINQLITMC 154 (158)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554 3348889999999999999999853
No 73
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=42.13 E-value=20 Score=31.53 Aligned_cols=30 Identities=23% Similarity=0.140 Sum_probs=14.8
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHhhhHHHHH
Q psy13624 4 EAHITHLNNEIAKLKTQVQQVIGENETLKA 33 (187)
Q Consensus 4 ea~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~ 33 (187)
|++|..+.++|+.|+..++.++....+|+.
T Consensus 10 E~~Il~~~~~i~~L~~~l~~~~~ki~~L~~ 39 (319)
T 1fzc_C 10 EASILTHDSSIRYLQEIYNSNNQKIVNLKE 39 (319)
T ss_dssp CTTTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555544444443
No 74
>1l9l_A Granulysin; saposin fold, membrane-lytic, antimicrobial protein; HET: MPO; 0.92A {Homo sapiens} SCOP: a.64.1.1
Probab=41.97 E-value=76 Score=21.68 Aligned_cols=49 Identities=12% Similarity=0.183 Sum_probs=38.2
Q ss_pred HHHHHHHHhhcCCCCCchHHHHHHHHhhhhhHH-HHHHhhhh-HHhHHHHHH
Q psy13624 121 RIAVSELSAIFPQNTNNDLIRHALRSLNTSTVR-LQAECAQL-EGSAERVRS 170 (187)
Q Consensus 121 ~~AV~el~alFP~~~~~e~vr~~L~~L~~~a~~-Lq~eC~~~-q~~t~qv~~ 170 (187)
..+|.++-.+. +++..++|+.+|.++=+.-.. ++.+|..+ ..-..++++
T Consensus 8 ~~~v~~le~~l-~n~Te~~I~~~L~~vC~~l~~~~~~~C~~~V~~y~~~Ii~ 58 (74)
T 1l9l_A 8 LTIVQKLKKMV-DKPTQRSVSNAATRVCRTGRSRWRDVCRNFMRRYQSRVIQ 58 (74)
T ss_dssp HHHHHHHHHHC-SSCCHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-cccCHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH
Confidence 46788999999 889999999999998877666 99999776 223444443
No 75
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=41.32 E-value=25 Score=25.90 Aligned_cols=27 Identities=15% Similarity=0.330 Sum_probs=23.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhhHHHH
Q psy13624 6 HITHLNNEIAKLKTQVQQVIGENETLK 32 (187)
Q Consensus 6 ~iq~l~~ei~~Lq~~i~~L~~EN~~Lk 32 (187)
++..|+++++.|+.++..+..|+..|+
T Consensus 8 ~~~~l~~~~~~l~~~i~~lkeel~~L~ 34 (109)
T 2wg5_A 8 RMKQLEDKVEELLSKNYHLENEVARLR 34 (109)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345789999999999999999999998
No 76
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=40.89 E-value=21 Score=30.67 Aligned_cols=24 Identities=17% Similarity=0.230 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHH
Q psy13624 9 HLNNEIAKLKTQVQQVIGENETLK 32 (187)
Q Consensus 9 ~l~~ei~~Lq~~i~~L~~EN~~Lk 32 (187)
.|.++++.++.+|.+|+.|+..|+
T Consensus 72 ~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 72 KLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467888888888888888888887
No 77
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=40.60 E-value=26 Score=26.47 Aligned_cols=30 Identities=27% Similarity=0.440 Sum_probs=26.4
Q ss_pred hhHHHHhHHHHHHHHHHHHHHHHhhhHHHH
Q psy13624 3 SEAHITHLNNEIAKLKTQVQQVIGENETLK 32 (187)
Q Consensus 3 Sea~iq~l~~ei~~Lq~~i~~L~~EN~~Lk 32 (187)
+.++|++|..+|++|.++-+.|-.||.--+
T Consensus 63 ~~~~v~eLe~everL~~ENq~L~~e~~~~~ 92 (104)
T 3s9g_A 63 LDARVRELELELDRLRAENLQLLTENELHR 92 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 457888999999999999999999998776
No 78
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=40.45 E-value=27 Score=23.23 Aligned_cols=26 Identities=23% Similarity=0.472 Sum_probs=22.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhhHHH
Q psy13624 6 HITHLNNEIAKLKTQVQQVIGENETL 31 (187)
Q Consensus 6 ~iq~l~~ei~~Lq~~i~~L~~EN~~L 31 (187)
+..+|...++.-++.|.+|..||-=|
T Consensus 15 k~eeler~lrk~kk~iKklEdeNPWL 40 (50)
T 1a92_A 15 KLEELERDLRKLKKKIKKLEEDNPWL 40 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTH
T ss_pred HHHHHHHHHHHHHHHHHhhhccCCch
Confidence 45689999999999999999998543
No 79
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=39.73 E-value=44 Score=25.77 Aligned_cols=26 Identities=19% Similarity=0.285 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy13624 9 HLNNEIAKLKTQVQQVIGENETLKAA 34 (187)
Q Consensus 9 ~l~~ei~~Lq~~i~~L~~EN~~Lk~~ 34 (187)
+|+.++-.+|.+++.+.+|+..|+..
T Consensus 93 ~lK~el~~~~~k~e~~~~e~~~l~~~ 118 (138)
T 3hnw_A 93 DLKHELIAAQIKAESSAKEIKELKSE 118 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555543
No 80
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=39.67 E-value=27 Score=25.30 Aligned_cols=29 Identities=17% Similarity=0.253 Sum_probs=15.4
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHhhhHHHH
Q psy13624 4 EAHITHLNNEIAKLKTQVQQVIGENETLK 32 (187)
Q Consensus 4 ea~iq~l~~ei~~Lq~~i~~L~~EN~~Lk 32 (187)
++++++.....+.|..++++|..+-..|+
T Consensus 44 eskL~eae~rn~eL~~e~~~l~~~~eelq 72 (81)
T 1wt6_A 44 ASQLREAEARNRDLEAHVRQLQERMELLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555554
No 81
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=39.57 E-value=28 Score=25.39 Aligned_cols=25 Identities=8% Similarity=0.232 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHH
Q psy13624 10 LNNEIAKLKTQVQQVIGENETLKAA 34 (187)
Q Consensus 10 l~~ei~~Lq~~i~~L~~EN~~Lk~~ 34 (187)
|+.+|+.|+.+++.|+.+..+|+..
T Consensus 2 ~~~~l~~l~~~~~~l~~~l~~l~~~ 26 (149)
T 1rtm_1 2 IEVKLANMEAEINTLKSKLELTNKL 26 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5566777777777777777777643
No 82
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=39.46 E-value=29 Score=23.33 Aligned_cols=20 Identities=35% Similarity=0.433 Sum_probs=11.3
Q ss_pred HHHHHHHHHHhhhHHHHHHH
Q psy13624 16 KLKTQVQQVIGENETLKAAL 35 (187)
Q Consensus 16 ~Lq~~i~~L~~EN~~Lk~~~ 35 (187)
+|=.+|+-|..||+.||+.+
T Consensus 7 QL~~QVe~Lk~ENshLrrEL 26 (54)
T 1deb_A 7 QLLKQVEALKMENSNLRQEL 26 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHH
Confidence 34455666666666666544
No 83
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=38.98 E-value=44 Score=25.86 Aligned_cols=30 Identities=27% Similarity=0.463 Sum_probs=19.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy13624 6 HITHLNNEIAKLKTQVQQVIGENETLKAAL 35 (187)
Q Consensus 6 ~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~ 35 (187)
.|.+|+.+|+..-.+|++|..+|..|...+
T Consensus 79 EI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~ 108 (121)
T 3mq7_A 79 EITTLNHKLQDASAEVERLRRENQVLSVRI 108 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhchhhhhHh
Confidence 455666666666666666666666666544
No 84
>2qsb_A UPF0147 protein TA0600; structural genomics, four-helix bundle, PSI-2, protein structure initiative; HET: MSE; 1.30A {Thermoplasma acidophilum dsm 1728} SCOP: a.29.14.1
Probab=38.84 E-value=82 Score=23.13 Aligned_cols=51 Identities=20% Similarity=0.253 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCccchHHHHHHHHHHHHhhcCCCCCchHHHHH
Q psy13624 87 VRRTDQVTKRIQELAAHMRSSDKCHSFVPHAERIRIAVSELSAIFPQNTNNDLIRHA 143 (187)
Q Consensus 87 ir~TE~vT~~IqeLl~aaq~~~~~~~fvpcae~I~~AV~el~alFP~~~~~e~vr~~ 143 (187)
+|..|.+.+.+-+.|..+-+ +.-|| .+||.|.++.....=++..+..||++
T Consensus 5 ~~~~e~~ik~~~~~L~~I~~----D~sVP--RNIRraA~ea~~~L~~e~~~~~vRAA 55 (89)
T 2qsb_A 5 VRVDQNLFNEVMYLLDELSQ----DITVP--KNVRKVAQDSKAKLSQENESLDLRCA 55 (89)
T ss_dssp CHHHHHHHHHHHHHHHHHHT----CTTSC--HHHHHHHHHHHHHHTCTTSCHHHHHH
T ss_pred ecccHHHHHHHHHHHHHHHc----CCCCC--hHHHHHHHHHHHHHhCCCcchhHHHH
Confidence 45555555554446665554 45566 69999999999999777788888864
No 85
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=37.80 E-value=61 Score=21.41 Aligned_cols=28 Identities=7% Similarity=0.121 Sum_probs=20.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhhhHHHH
Q psy13624 5 AHITHLNNEIAKLKTQVQQVIGENETLK 32 (187)
Q Consensus 5 a~iq~l~~ei~~Lq~~i~~L~~EN~~Lk 32 (187)
++|+.|+..+..|+..|..|..+...-|
T Consensus 11 s~V~~L~~kVdqLssdV~al~~~v~~ak 38 (52)
T 1jcd_A 11 SDAQTANAKADQASNDANAARSDAQAAK 38 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788888888887777777766555
No 86
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=37.38 E-value=59 Score=23.13 Aligned_cols=27 Identities=22% Similarity=0.457 Sum_probs=23.4
Q ss_pred hhHHHHhHHHHHHHHHHHHHHHHhhhH
Q psy13624 3 SEAHITHLNNEIAKLKTQVQQVIGENE 29 (187)
Q Consensus 3 Sea~iq~l~~ei~~Lq~~i~~L~~EN~ 29 (187)
-|.||..|...+..||+.+.+|-.|..
T Consensus 5 lEEKv~~LE~sld~LQTrfARLLaEy~ 31 (74)
T 3swf_A 5 LEEKVTRMESSVDLLQTRFARILAEYE 31 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999877754
No 87
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=36.89 E-value=26 Score=24.17 Aligned_cols=22 Identities=9% Similarity=0.191 Sum_probs=16.9
Q ss_pred HHhHHHHHHHHHHHHHHHHhhh
Q psy13624 7 ITHLNNEIAKLKTQVQQVIGEN 28 (187)
Q Consensus 7 iq~l~~ei~~Lq~~i~~L~~EN 28 (187)
|..|..++..|+.+++.|..+|
T Consensus 59 I~~L~~~~~~L~~e~~~L~~~n 80 (80)
T 1hlo_A 59 IQYMRRKNHTHQQDIDDLKRQN 80 (80)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 4577888888888888887776
No 88
>3ay5_A Cyclin-D1-binding protein 1; dominant-negative helix-loop-helix transcriptional regulator cycle; 2.50A {Homo sapiens}
Probab=36.87 E-value=2.1e+02 Score=24.95 Aligned_cols=106 Identities=13% Similarity=0.183 Sum_probs=71.2
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHhccCCCC---CCccch---------HHHHHHHHHHHHhhcCC--CCCchHHHHHHH
Q psy13624 80 MPQSEEVVRRTDQVTKRIQELAAHMRSSDKC---HSFVPH---------AERIRIAVSELSAIFPQ--NTNNDLIRHALR 145 (187)
Q Consensus 80 ~P~~e~Vir~TE~vT~~IqeLl~aaq~~~~~---~~fvpc---------ae~I~~AV~el~alFP~--~~~~e~vr~~L~ 145 (187)
.|+.+.-...+-.+...+|-++...+.|..+ +.|-+- |..|+.-++.|.=+|=+ .|...+++..+.
T Consensus 11 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~l~~~a~~l~~~aTKlsLl~~~~p~Ps~~~~~~~~~ 90 (360)
T 3ay5_A 11 VPTLASPLEQLRHLAEELRLLLPRVRVGEAQETTEEFNREMFWRRLNEAAVTVSREATTLTIVFSQLPLPSPQETQKFCE 90 (360)
T ss_dssp ---CCCHHHHHHHHHHHHHTHHHHHHSCCC---CCSCCHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCCHHHHHHHHH
T ss_pred CCcccchHHHHHHHHHHHHHHHHHhccCCCCCCcccCCccchHHHHHHHHHHHHhhhHHhhhhccCCCCCCHHHHHHHHH
Confidence 4555555556667788889999988887744 246664 67788888999999833 344456667777
Q ss_pred HhhhhhHHHHHHhhhh-----HHhHHHHHHHHHHHHHHHHHhhhh
Q psy13624 146 SLNTSTVRLQAECAQL-----EGSAERVRSCAYNMAKANKQLLTQ 185 (187)
Q Consensus 146 ~L~~~a~~Lq~eC~~~-----q~~t~qv~~cAYdIAKAaK~LvT~ 185 (187)
.+..+..-+-.-|... ...-..|+..+.+|-+..++|+..
T Consensus 91 ~~~~~l~~l~s~~~~~~~~~g~tl~~~i~~~v~~vl~~~~~L~~~ 135 (360)
T 3ay5_A 91 QVHAAIKAFIAVYYLLPKDQGITLRKLVRGATLDIVDGMAQLMEV 135 (360)
T ss_dssp HHHHHHHHHHHHHTTSCGGGCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766655565666444 223678888888888888888754
No 89
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=35.87 E-value=40 Score=24.54 Aligned_cols=28 Identities=25% Similarity=0.181 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHh
Q psy13624 9 HLNNEIAKLKTQVQQVIGENETLKAALN 36 (187)
Q Consensus 9 ~l~~ei~~Lq~~i~~L~~EN~~Lk~~~~ 36 (187)
+--+|...|...|.+|..|+..||.++.
T Consensus 43 eaL~EN~~Lh~~ie~l~eEi~~lk~en~ 70 (83)
T 1uii_A 43 EALKENEKLHKEIEQKDNEIARLKKENK 70 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557888999999999999999997764
No 90
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=35.74 E-value=41 Score=20.73 Aligned_cols=19 Identities=21% Similarity=0.399 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHhhhHHHHH
Q psy13624 15 AKLKTQVQQVIGENETLKA 33 (187)
Q Consensus 15 ~~Lq~~i~~L~~EN~~Lk~ 33 (187)
++|..+|+.|-.+|+.|..
T Consensus 4 nQLE~kVEeLl~~n~~Le~ 22 (34)
T 2oxj_A 4 XQLEXKVXELLXKNXHLEX 22 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHH
Confidence 3455555555555555554
No 91
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=35.68 E-value=76 Score=19.64 Aligned_cols=32 Identities=25% Similarity=0.349 Sum_probs=25.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhhhHHHHHHHh
Q psy13624 5 AHITHLNNEIAKLKTQVQQVIGENETLKAALN 36 (187)
Q Consensus 5 a~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~~ 36 (187)
..+|+|.+-+...=.+|..|..+|..|..++.
T Consensus 6 e~mq~LNdrlAsyidkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 6 VELQELNDRFANYIDKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678877777777789999999999987663
No 92
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=35.52 E-value=48 Score=20.40 Aligned_cols=17 Identities=0% Similarity=0.169 Sum_probs=8.2
Q ss_pred HHHHHHHHHHhhhHHHH
Q psy13624 16 KLKTQVQQVIGENETLK 32 (187)
Q Consensus 16 ~Lq~~i~~L~~EN~~Lk 32 (187)
+|..+|+.|-.+|+.|.
T Consensus 5 QLEdKVEeLl~~~~~Le 21 (34)
T 3c3f_A 5 QIEXKLEXILSXLYHXE 21 (34)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHH
Confidence 44444555555554444
No 93
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=34.89 E-value=46 Score=24.06 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHh
Q psy13624 14 IAKLKTQVQQVIGENETLKAALN 36 (187)
Q Consensus 14 i~~Lq~~i~~L~~EN~~Lk~~~~ 36 (187)
...++..+..|..||..|+.++.
T Consensus 38 ~~e~~~r~~~Le~EN~~Lr~~v~ 60 (87)
T 1hjb_A 38 NLETQHKVLELTAENERLQKKVE 60 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667777777777776554
No 94
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=34.44 E-value=37 Score=25.37 Aligned_cols=26 Identities=19% Similarity=0.383 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy13624 9 HLNNEIAKLKTQVQQVIGENETLKAA 34 (187)
Q Consensus 9 ~l~~ei~~Lq~~i~~L~~EN~~Lk~~ 34 (187)
.-+.||..|+..|+.|+.|...++.+
T Consensus 33 ~~k~Ei~elrr~iq~L~~el~~l~~~ 58 (129)
T 3tnu_B 33 NTKHEISEMNRMIQRLRAEIDNVKKQ 58 (129)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 44566666666666666666666543
No 95
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=34.34 E-value=4.9 Score=27.76 Aligned_cols=24 Identities=13% Similarity=0.059 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHH
Q psy13624 9 HLNNEIAKLKTQVQQVIGENETLK 32 (187)
Q Consensus 9 ~l~~ei~~Lq~~i~~L~~EN~~Lk 32 (187)
+...+|.+|+.++..|..||.-||
T Consensus 63 ~~~~ei~~L~~e~~~L~~e~~~Lk 86 (97)
T 2jn6_A 63 SEAEQIRQLKKENALQRARTRHPA 86 (97)
T ss_dssp HTHHHHHHHHHCGGGGGGTTSCCC
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777777777776665
No 96
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=33.96 E-value=66 Score=19.76 Aligned_cols=27 Identities=7% Similarity=0.209 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHh
Q psy13624 10 LNNEIAKLKTQVQQVIGENETLKAALN 36 (187)
Q Consensus 10 l~~ei~~Lq~~i~~L~~EN~~Lk~~~~ 36 (187)
+...+...|..|..|...|..|..++.
T Consensus 5 mRrKn~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 5 MRRKNDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHhhHhhHHHHHHHHHHHHHHHH
Confidence 455666777778888888888776653
No 97
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=33.51 E-value=66 Score=23.97 Aligned_cols=32 Identities=16% Similarity=0.173 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHhhcCC
Q psy13624 9 HLNNEIAKLKTQVQQVIGENETLKAALNARNS 40 (187)
Q Consensus 9 ~l~~ei~~Lq~~i~~L~~EN~~Lk~~~~~~~~ 40 (187)
.|...+..||+.++++.....+.+..+..++.
T Consensus 20 ~l~~~~~~l~~~l~~~~~~l~~~~~~~~~Cp~ 51 (182)
T 3kqg_A 20 ALNTKIRALQGSLENMSKLLKRQNDILQVVSQ 51 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 44555555555555544433332323444653
No 98
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=33.16 E-value=52 Score=23.25 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHh
Q psy13624 14 IAKLKTQVQQVIGENETLKAALN 36 (187)
Q Consensus 14 i~~Lq~~i~~L~~EN~~Lk~~~~ 36 (187)
...++..+..|..||..|+..+.
T Consensus 38 ~~e~~~r~~~L~~eN~~L~~~v~ 60 (78)
T 1gu4_A 38 NLETQHKVLELTAENERLQKKVE 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777765443
No 99
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=32.45 E-value=50 Score=29.02 Aligned_cols=31 Identities=13% Similarity=0.140 Sum_probs=18.7
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy13624 4 EAHITHLNNEIAKLKTQVQQVIGENETLKAA 34 (187)
Q Consensus 4 ea~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~ 34 (187)
+++|+.|+..|..++.+|++|+....+|+..
T Consensus 25 ~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~ 55 (323)
T 1lwu_C 25 DAQIQELSEMWRVNQQFVTRLQQQLVDIRQT 55 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666666543
No 100
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=32.38 E-value=78 Score=23.09 Aligned_cols=33 Identities=24% Similarity=0.369 Sum_probs=24.3
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHhhhHHHHHHHh
Q psy13624 4 EAHITHLNNEIAKLKTQVQQVIGENETLKAALN 36 (187)
Q Consensus 4 ea~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~~ 36 (187)
|..+.+|..++..|+.+...+..|-..+|+.+.
T Consensus 54 E~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~ 86 (90)
T 2wt7_B 54 ENEKTQLIQQVEQLKQEVSRLARERDAYKVKSE 86 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777888888888888888887777664
No 101
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=32.01 E-value=39 Score=23.56 Aligned_cols=32 Identities=16% Similarity=0.321 Sum_probs=17.3
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy13624 4 EAHITHLNNEIAKLKTQVQQVIGENETLKAAL 35 (187)
Q Consensus 4 ea~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~ 35 (187)
+.+|.+|..+|+.=..+|+.|.++-..+.+.+
T Consensus 24 de~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl 55 (67)
T 1zxa_A 24 EERIKELEKRLSEKEEEIQELKRKLHKCQSVL 55 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44555666666666666666666555555444
No 102
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=31.47 E-value=79 Score=23.50 Aligned_cols=27 Identities=22% Similarity=0.369 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHhh
Q psy13624 11 NNEIAKLKTQVQQVIGENETLKAALNA 37 (187)
Q Consensus 11 ~~ei~~Lq~~i~~L~~EN~~Lk~~~~~ 37 (187)
++++..|+.+|..|..||..|+.....
T Consensus 11 ~e~~~~lr~ei~~Le~E~~rLr~~~~~ 37 (100)
T 1go4_E 11 REEADTLRLKVEELEGERSRLEEEKRM 37 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999987755
No 103
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=31.30 E-value=65 Score=23.88 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=20.0
Q ss_pred HhHHHHHHHHHHHHHHHHhhhHHHH
Q psy13624 8 THLNNEIAKLKTQVQQVIGENETLK 32 (187)
Q Consensus 8 q~l~~ei~~Lq~~i~~L~~EN~~Lk 32 (187)
++|++||.+|.++|++|..=-+.+|
T Consensus 50 ~eL~~EI~~L~~eI~~LE~iqs~aK 74 (96)
T 1t3j_A 50 KHLEEEIARLSKEIDQLEKMQNNSK 74 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3999999999999888876655555
No 104
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=31.29 E-value=24 Score=23.13 Aligned_cols=21 Identities=10% Similarity=0.218 Sum_probs=11.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHH
Q psy13624 5 AHITHLNNEIAKLKTQVQQVI 25 (187)
Q Consensus 5 a~iq~l~~ei~~Lq~~i~~L~ 25 (187)
.+|.+|.++|..|...|+.|.
T Consensus 49 ~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 455566666666666655544
No 105
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=31.14 E-value=47 Score=24.13 Aligned_cols=24 Identities=17% Similarity=0.187 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHH
Q psy13624 9 HLNNEIAKLKTQVQQVIGENETLK 32 (187)
Q Consensus 9 ~l~~ei~~Lq~~i~~L~~EN~~Lk 32 (187)
.|..+|..|+.++.+|.++-.+++
T Consensus 5 ~L~~~i~~L~~q~~~L~~ei~~~~ 28 (85)
T 3viq_B 5 QLESRVHLLEQQKEQLESSLQDAL 28 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444445544444444
No 106
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=31.11 E-value=72 Score=23.75 Aligned_cols=32 Identities=22% Similarity=0.431 Sum_probs=25.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhhhHHHHHHHh
Q psy13624 5 AHITHLNNEIAKLKTQVQQVIGENETLKAALN 36 (187)
Q Consensus 5 a~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~~ 36 (187)
..|.+++-.|..|+.+|+.|.+.|..|...+.
T Consensus 36 ~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~ 67 (129)
T 3tnu_B 36 HEISEMNRMIQRLRAEIDNVKKQCANLQNAIA 67 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 45678888888999999999888888876553
No 107
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=30.95 E-value=53 Score=21.54 Aligned_cols=24 Identities=4% Similarity=0.126 Sum_probs=10.5
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHH
Q psy13624 9 HLNNEIAKLKTQVQQVIGENETLK 32 (187)
Q Consensus 9 ~l~~ei~~Lq~~i~~L~~EN~~Lk 32 (187)
.+.+++..|..+++.|..++..|+
T Consensus 31 ~v~~~~~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 31 QVRKDYEIVLRKKTELEAKVNELD 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 108
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=30.46 E-value=66 Score=19.67 Aligned_cols=18 Identities=0% Similarity=0.102 Sum_probs=9.4
Q ss_pred HHHHHHHHHHhhhHHHHH
Q psy13624 16 KLKTQVQQVIGENETLKA 33 (187)
Q Consensus 16 ~Lq~~i~~L~~EN~~Lk~ 33 (187)
+|..+|+.|-++|+.|..
T Consensus 4 QLEdKvEeLl~~~~~Le~ 21 (33)
T 3c3g_A 4 XIEXKLXEIXSKXYHXEN 21 (33)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHH
Confidence 444555555555555543
No 109
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=30.42 E-value=63 Score=23.23 Aligned_cols=27 Identities=19% Similarity=0.405 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHh
Q psy13624 10 LNNEIAKLKTQVQQVIGENETLKAALN 36 (187)
Q Consensus 10 l~~ei~~Lq~~i~~L~~EN~~Lk~~~~ 36 (187)
+..+|..|+..|..+..||..|..+++
T Consensus 54 ye~~i~~Lr~~i~~~~~ek~~l~~e~d 80 (93)
T 3s4r_A 54 YEEEMRELRRQVDQLTNDKARVEVERD 80 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888888888888775544
No 110
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=29.82 E-value=46 Score=27.95 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHH
Q psy13624 9 HLNNEIAKLKTQVQQVIGENETLK 32 (187)
Q Consensus 9 ~l~~ei~~Lq~~i~~L~~EN~~Lk 32 (187)
+|-.+|..|+.+|..|..||..||
T Consensus 119 ~Lh~~ie~l~eEi~~LkeEn~eLk 142 (209)
T 2wvr_A 119 KLHKEIEQKDNEIARLKKENKELA 142 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677778888888888888888888
No 111
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=29.63 E-value=45 Score=21.45 Aligned_cols=20 Identities=5% Similarity=0.252 Sum_probs=10.1
Q ss_pred HHhHHHHHHHHHHHHHHHHh
Q psy13624 7 ITHLNNEIAKLKTQVQQVIG 26 (187)
Q Consensus 7 iq~l~~ei~~Lq~~i~~L~~ 26 (187)
|.+|.+.|..|...|..|.+
T Consensus 46 ~~~L~~ri~~Le~~l~~l~~ 65 (70)
T 1zme_C 46 LQQLQKDLNDKTEENNRLKA 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555554443
No 112
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=29.47 E-value=70 Score=19.69 Aligned_cols=18 Identities=0% Similarity=0.230 Sum_probs=9.6
Q ss_pred HHHHHHHHHHhhhHHHHH
Q psy13624 16 KLKTQVQQVIGENETLKA 33 (187)
Q Consensus 16 ~Lq~~i~~L~~EN~~Lk~ 33 (187)
+|..+|+.|-++|+.|..
T Consensus 5 QLEdKVEeLl~~n~~Le~ 22 (34)
T 1uo4_A 5 QIEDKGEEILSKLYHIEN 22 (34)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHH
Confidence 444555555555555543
No 113
>3dyj_A Talin-1; helix bundles, cytoskeletal protein, integrin-bindin site, IBS2, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane; 1.85A {Mus musculus} PDB: 4dj9_B
Probab=29.27 E-value=3e+02 Score=24.34 Aligned_cols=23 Identities=13% Similarity=0.291 Sum_probs=11.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcc
Q psy13624 84 EEVVRRTDQVTKRIQELAAHMRS 106 (187)
Q Consensus 84 e~Vir~TE~vT~~IqeLl~aaq~ 106 (187)
-.|+-.+.-|....++|+.+...
T Consensus 117 v~lLna~kdVa~al~~Li~atK~ 139 (332)
T 3dyj_A 117 VVLINAVKDVAKALGDLISATKA 139 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555555555443
No 114
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=28.31 E-value=61 Score=28.39 Aligned_cols=32 Identities=13% Similarity=0.133 Sum_probs=28.4
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy13624 4 EAHITHLNNEIAKLKTQVQQVIGENETLKAAL 35 (187)
Q Consensus 4 ea~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~ 35 (187)
+++|+.|.+.|..++.+|++|+....+|....
T Consensus 17 ~~~i~~L~~~l~~~~~ki~~L~~~i~~l~~~~ 48 (319)
T 1fzc_C 17 DSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQC 48 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78899999999999999999999988887544
No 115
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=28.24 E-value=68 Score=24.21 Aligned_cols=27 Identities=7% Similarity=0.165 Sum_probs=16.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhhhHHH
Q psy13624 5 AHITHLNNEIAKLKTQVQQVIGENETL 31 (187)
Q Consensus 5 a~iq~l~~ei~~Lq~~i~~L~~EN~~L 31 (187)
.+|..|.+|++.|++++++|..+....
T Consensus 32 ~~v~~l~~e~k~l~ke~~~l~~~~a~~ 58 (171)
T 2zvf_A 32 KTVERFFEEWKDQRKEIERLKSVIADL 58 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666655444
No 116
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=28.12 E-value=68 Score=28.47 Aligned_cols=28 Identities=25% Similarity=0.325 Sum_probs=16.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhhhHHHH
Q psy13624 5 AHITHLNNEIAKLKTQVQQVIGENETLK 32 (187)
Q Consensus 5 a~iq~l~~ei~~Lq~~i~~L~~EN~~Lk 32 (187)
.+|.+|++++..|+..|++++.++.+++
T Consensus 10 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~ 37 (403)
T 4etp_A 10 EKIAALKEKIAALKEKIKDTELGMKELN 37 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666666666655
No 117
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=27.92 E-value=52 Score=24.12 Aligned_cols=21 Identities=19% Similarity=0.452 Sum_probs=9.7
Q ss_pred HHHHHHHHHHhhhHHHHHHHh
Q psy13624 16 KLKTQVQQVIGENETLKAALN 36 (187)
Q Consensus 16 ~Lq~~i~~L~~EN~~Lk~~~~ 36 (187)
+|+.++..|..+...+|..+.
T Consensus 11 ~l~~~~~~l~~~i~~lkeel~ 31 (109)
T 2wg5_A 11 QLEDKVEELLSKNYHLENEVA 31 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 118
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=27.83 E-value=78 Score=23.36 Aligned_cols=30 Identities=30% Similarity=0.288 Sum_probs=21.3
Q ss_pred chhHHHHhHHHHHHHHHHHHHHHHhhhHHH
Q psy13624 2 ISEAHITHLNNEIAKLKTQVQQVIGENETL 31 (187)
Q Consensus 2 ~Sea~iq~l~~ei~~Lq~~i~~L~~EN~~L 31 (187)
++|-+|.+|.+||+.|=.+-..-..--.+|
T Consensus 49 L~E~~IRdLNDEINkL~rEK~~WE~rI~eL 78 (92)
T 1x4t_A 49 LGEFRIRDLNDEINKLLREKGHWEVRIKEL 78 (92)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467788899999888877766555554444
No 119
>3tq7_B Microtubule-associated protein RP/EB family membe; CAP-Gly domain, protein-protein interaction, microtubule BIN cytoskeleton, protein binding; 2.30A {Homo sapiens} SCOP: a.245.1.1
Probab=27.01 E-value=34 Score=24.65 Aligned_cols=25 Identities=32% Similarity=0.456 Sum_probs=18.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhhhH
Q psy13624 5 AHITHLNNEIAKLKTQVQQVIGENE 29 (187)
Q Consensus 5 a~iq~l~~ei~~Lq~~i~~L~~EN~ 29 (187)
+.|.+|..++..|+..|+.|.+|-.
T Consensus 1 ~ei~~L~~ei~eLk~~ve~lEkERD 25 (82)
T 3tq7_B 1 AQILELNQQLVDLKLTVDGLEKERD 25 (82)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577889999999999999998854
No 120
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=26.93 E-value=38 Score=25.44 Aligned_cols=25 Identities=20% Similarity=0.193 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHH
Q psy13624 9 HLNNEIAKLKTQVQQVIGENETLKA 33 (187)
Q Consensus 9 ~l~~ei~~Lq~~i~~L~~EN~~Lk~ 33 (187)
..+.||..|+..|+.|+.|...++.
T Consensus 35 ~~k~Ei~elrr~iq~L~~el~~l~~ 59 (131)
T 3tnu_A 35 SGKSEISELRRTMQNLEIELQSQLS 59 (131)
T ss_dssp ------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555555555555555555553
No 121
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=26.61 E-value=59 Score=28.90 Aligned_cols=28 Identities=21% Similarity=0.309 Sum_probs=12.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhhHHHHH
Q psy13624 6 HITHLNNEIAKLKTQVQQVIGENETLKA 33 (187)
Q Consensus 6 ~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~ 33 (187)
+|..|+++|..|+.++.+|+.+..+++.
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 31 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKIKDTEL 31 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443
No 122
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=26.54 E-value=85 Score=19.31 Aligned_cols=19 Identities=21% Similarity=0.296 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHhhhHHHHH
Q psy13624 15 AKLKTQVQQVIGENETLKA 33 (187)
Q Consensus 15 ~~Lq~~i~~L~~EN~~Lk~ 33 (187)
++|-.+|+.|-++|+.|..
T Consensus 4 nQLEdkVEeLl~~~~~Le~ 22 (34)
T 2hy6_A 4 KQLADAVEELASANYHLAN 22 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHH
Confidence 4555666666666666654
No 123
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=26.44 E-value=61 Score=23.47 Aligned_cols=23 Identities=17% Similarity=0.313 Sum_probs=19.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhh
Q psy13624 5 AHITHLNNEIAKLKTQVQQVIGE 27 (187)
Q Consensus 5 a~iq~l~~ei~~Lq~~i~~L~~E 27 (187)
.+|.+|..+++.||..+.+|..-
T Consensus 4 ~~l~~l~~~~~~l~~~l~~l~~~ 26 (149)
T 1rtm_1 4 VKLANMEAEINTLKSKLELTNKL 26 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Confidence 56888999999999999888863
No 124
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=26.39 E-value=45 Score=19.81 Aligned_cols=17 Identities=35% Similarity=0.460 Sum_probs=10.7
Q ss_pred HHHHHHHHHhhhHHHHH
Q psy13624 17 LKTQVQQVIGENETLKA 33 (187)
Q Consensus 17 Lq~~i~~L~~EN~~Lk~ 33 (187)
|-..+.+|..||.+||.
T Consensus 4 lnallasleaenkqlka 20 (31)
T 1p9i_A 4 LNALLASLEAENKQLKA 20 (31)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44456667777777764
No 125
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=26.27 E-value=78 Score=23.52 Aligned_cols=30 Identities=17% Similarity=0.316 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHhhc
Q psy13624 9 HLNNEIAKLKTQVQQVIGENETLKAALNAR 38 (187)
Q Consensus 9 ~l~~ei~~Lq~~i~~L~~EN~~Lk~~~~~~ 38 (187)
-+..+|+.|+.+|..+..||..|.-+++..
T Consensus 17 ~ye~~I~~LR~qid~~~~e~a~l~leldn~ 46 (119)
T 3ol1_A 17 LYEEEMRELRRQVDQLTNDKARVEVERDNL 46 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999888666553
No 126
>2qzg_A Conserved uncharacterized archaeal protein; unknown function protein, structu genomics, PSI-2, protein structure initiative; 2.09A {Methanococcus maripaludis S2} SCOP: a.29.14.1
Probab=26.16 E-value=2e+02 Score=21.29 Aligned_cols=43 Identities=16% Similarity=0.261 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhccCCCCCCccchHHHHHHHHHHHHhhcCCCCCchHHHHH
Q psy13624 94 TKRIQELAAHMRSSDKCHSFVPHAERIRIAVSELSAIFPQNTNNDLIRHA 143 (187)
Q Consensus 94 T~~IqeLl~aaq~~~~~~~fvpcae~I~~AV~el~alFP~~~~~e~vr~~ 143 (187)
-.+|+ .|..+-+ +.-|| .+||.|.++.....=++..+..||++
T Consensus 17 k~~~~-~L~~I~~----D~sVP--RNIRraA~ea~~~L~~e~~~~~vRAA 59 (94)
T 2qzg_A 17 KNISS-MLEEIVE----DTTVP--RNIRAAADNAKNALHNEEQELIVRSA 59 (94)
T ss_dssp HHHHH-HHHHHHT----CTTSC--HHHHHHHHHHHHHTTCTTSCHHHHHH
T ss_pred HHHHH-HHHHHHc----CCCCC--hHHHHHHHHHHHHHhCCCcchhHHHH
Confidence 34455 4444433 35566 69999999999999877788888864
No 127
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=26.12 E-value=85 Score=27.51 Aligned_cols=34 Identities=15% Similarity=-0.010 Sum_probs=25.7
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHhhhHHHHHHHhh
Q psy13624 4 EAHITHLNNEIAKLKTQVQQVIGENETLKAALNA 37 (187)
Q Consensus 4 ea~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~~~ 37 (187)
|..|.....+|+.|+.+++++++...+|+.++..
T Consensus 18 e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~ 51 (323)
T 1lwu_C 18 EQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVD 51 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566778888888888888888888876654
No 128
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=26.05 E-value=66 Score=22.08 Aligned_cols=25 Identities=12% Similarity=0.100 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHH
Q psy13624 11 NNEIAKLKTQVQQVIGENETLKAAL 35 (187)
Q Consensus 11 ~~ei~~Lq~~i~~L~~EN~~Lk~~~ 35 (187)
-+=|..|+..++.|..|...|+.+.
T Consensus 46 i~YI~~L~~~~~~l~~e~~~L~~~~ 70 (83)
T 1nkp_B 46 TEYIQYMRRKNHTHQQDIDDLKRQN 70 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457778888888888888887654
No 129
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=25.96 E-value=88 Score=19.24 Aligned_cols=17 Identities=6% Similarity=0.089 Sum_probs=7.4
Q ss_pred HHHHHHHHHHhhhHHHH
Q psy13624 16 KLKTQVQQVIGENETLK 32 (187)
Q Consensus 16 ~Lq~~i~~L~~EN~~Lk 32 (187)
+|-.+|+.|.++|+.|-
T Consensus 5 QledKvEel~~~~~~l~ 21 (34)
T 2r2v_A 5 QVADKLEEVASKLYHNA 21 (34)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHH
Confidence 34444444444444443
No 130
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=25.61 E-value=29 Score=25.38 Aligned_cols=24 Identities=13% Similarity=0.284 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHhh
Q psy13624 14 IAKLKTQVQQVIGENETLKAALNA 37 (187)
Q Consensus 14 i~~Lq~~i~~L~~EN~~Lk~~~~~ 37 (187)
+=+||++|-.|.++|.+|+..++.
T Consensus 60 ViRLQKKImdLE~~~~~l~~el~~ 83 (88)
T 1uuj_A 60 VIRLQKKVMELESKLNEAKEEFTS 83 (88)
T ss_dssp HHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 458999999999999999876654
No 131
>1buu_A Protein (mannose-binding protein A); lectin, HOST defense, metalloprotein, sugar binding protein; 1.90A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1
Probab=25.48 E-value=62 Score=24.17 Aligned_cols=24 Identities=8% Similarity=0.259 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHH
Q psy13624 10 LNNEIAKLKTQVQQVIGENETLKA 33 (187)
Q Consensus 10 l~~ei~~Lq~~i~~L~~EN~~Lk~ 33 (187)
+..+|+.|+.+++.|+.+...|+.
T Consensus 21 ~~~~l~~L~~~~~~L~~~l~~l~~ 44 (168)
T 1buu_A 21 IEVKLANMEAEINTLKSKLELTNK 44 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445566666666666666666664
No 132
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=25.25 E-value=1e+02 Score=24.84 Aligned_cols=31 Identities=35% Similarity=0.538 Sum_probs=20.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy13624 5 AHITHLNNEIAKLKTQVQQVIGENETLKAAL 35 (187)
Q Consensus 5 a~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~ 35 (187)
.+|+.|..|+.+++....++..||-+|-..+
T Consensus 97 ~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl 127 (168)
T 3o0z_A 97 ARITSLQEEVKHLKHNLEKVEGERKEAQDML 127 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777777777777777776665443
No 133
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=25.02 E-value=33 Score=21.00 Aligned_cols=25 Identities=8% Similarity=0.312 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHH
Q psy13624 11 NNEIAKLKTQVQQVIGENETLKAAL 35 (187)
Q Consensus 11 ~~ei~~Lq~~i~~L~~EN~~Lk~~~ 35 (187)
.+++.-++++|+.|+.++..+...+
T Consensus 3 ~~~i~avKkKiq~lq~q~d~aee~~ 27 (37)
T 3azd_A 3 SSSLEAVRRKIRSLQEQNYHLENEV 27 (37)
T ss_dssp ---CHHHHHHHHHHHHHTTTTHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777788888877776665443
No 134
>1qsd_A Protein (beta-tubulin binding post-chaperonin cofactor); four-helix-bundle, chaperone; 2.20A {Saccharomyces cerevisiae} SCOP: a.7.5.1
Probab=24.92 E-value=39 Score=25.08 Aligned_cols=43 Identities=14% Similarity=0.158 Sum_probs=32.8
Q ss_pred CccchHHHHHHHHHHHHhhcCCCCCchHHHHHHHHhhhhhHHH
Q psy13624 112 SFVPHAERIRIAVSELSAIFPQNTNNDLIRHALRSLNTSTVRL 154 (187)
Q Consensus 112 ~fvpcae~I~~AV~el~alFP~~~~~e~vr~~L~~L~~~a~~L 154 (187)
-+++|-.||..|+.+|-.+....-.++++..|-..|..+...|
T Consensus 61 mipd~~~Rl~~a~~~L~~~l~~~~~~ee~~~Ake~l~~a~~~~ 103 (106)
T 1qsd_A 61 LLPTLYEKIREFKEDLEQFLKTYQGTEDVSDARSAITSAQELL 103 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCSSSCCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhh
Confidence 5778999999999999999965556777777777776554433
No 135
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=24.46 E-value=74 Score=26.44 Aligned_cols=32 Identities=28% Similarity=0.471 Sum_probs=23.3
Q ss_pred HhHHHHHHHHHHH---HHHHHhhhHHHHHHHhhcC
Q psy13624 8 THLNNEIAKLKTQ---VQQVIGENETLKAALNARN 39 (187)
Q Consensus 8 q~l~~ei~~Lq~~---i~~L~~EN~~Lk~~~~~~~ 39 (187)
+.|+.|+.+|+.. ++.|..||..||..++...
T Consensus 29 ~~Lk~e~~~l~~~~~~~~~l~~En~rLr~lL~~~~ 63 (255)
T 2j5u_A 29 QHLKERLEELAQLESEVADLKKENKDLKESLDITD 63 (255)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 3677777766654 6677889999998776543
No 136
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=24.31 E-value=98 Score=19.01 Aligned_cols=17 Identities=0% Similarity=0.397 Sum_probs=8.0
Q ss_pred HHHHHHHHHHhhhHHHH
Q psy13624 16 KLKTQVQQVIGENETLK 32 (187)
Q Consensus 16 ~Lq~~i~~L~~EN~~Lk 32 (187)
+|..+|+.|-++|+.|.
T Consensus 5 QLEdKvEeLl~~~~~L~ 21 (34)
T 2bni_A 5 QIEDKLEEILSKGHHIC 21 (34)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHH
Confidence 34444444444444444
No 137
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=24.26 E-value=1.2e+02 Score=21.28 Aligned_cols=33 Identities=18% Similarity=0.270 Sum_probs=25.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhhhHHHHHHHhh
Q psy13624 5 AHITHLNNEIAKLKTQVQQVIGENETLKAALNA 37 (187)
Q Consensus 5 a~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~~~ 37 (187)
.++..+..+|..|...++.+..+-.+|+..+..
T Consensus 77 ~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~ 109 (117)
T 2zqm_A 77 EKIETLEVRLNALERQEKKLNEKLKELTAQIQS 109 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455577888888888888888888888876654
No 138
>1buu_A Protein (mannose-binding protein A); lectin, HOST defense, metalloprotein, sugar binding protein; 1.90A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1
Probab=24.00 E-value=70 Score=23.88 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=19.5
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHh
Q psy13624 4 EAHITHLNNEIAKLKTQVQQVIG 26 (187)
Q Consensus 4 ea~iq~l~~ei~~Lq~~i~~L~~ 26 (187)
+.+|++|..+|+.|+..+.+|..
T Consensus 22 ~~~l~~L~~~~~~L~~~l~~l~~ 44 (168)
T 1buu_A 22 EVKLANMEAEINTLKSKLELTNK 44 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 45688899999999999998876
No 139
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=23.97 E-value=75 Score=19.09 Aligned_cols=24 Identities=33% Similarity=0.454 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHh
Q psy13624 13 EIAKLKTQVQQVIGENETLKAALN 36 (187)
Q Consensus 13 ei~~Lq~~i~~L~~EN~~Lk~~~~ 36 (187)
|+.+|.+++.+-..||-+|.+.+.
T Consensus 2 evaqlekevaqaeaenyqleqeva 25 (33)
T 1fmh_A 2 EVAQLEKEVAQAEAENYQLEQEVA 25 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHH
Confidence 456677788888888888876543
No 140
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=23.66 E-value=1.2e+02 Score=19.97 Aligned_cols=28 Identities=18% Similarity=0.179 Sum_probs=20.5
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHhhhHHH
Q psy13624 4 EAHITHLNNEIAKLKTQVQQVIGENETL 31 (187)
Q Consensus 4 ea~iq~l~~ei~~Lq~~i~~L~~EN~~L 31 (187)
..+|.+|.+++.+++..++..-.|-..|
T Consensus 6 q~~i~~le~el~~~r~e~~~q~~eYq~L 33 (59)
T 1gk6_A 6 EDKVEELLSKNYHLENEVARLKKLVGDL 33 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888888888887776665554
No 141
>3vf0_A Vinculin, metavinculin; cytoskeletal F-actin binding protein, CEL adhesion-protein binding complex; HET: EPE; 2.54A {Homo sapiens}
Probab=23.50 E-value=1.2e+02 Score=26.38 Aligned_cols=94 Identities=9% Similarity=0.041 Sum_probs=53.3
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHhccCCCCCCccchHHHHHHHHHHHHhhcCCCCCchHHHHHH-------HHhhhhhHH
Q psy13624 81 PQSEEVVRRTDQVTKRIQELAAHMRSSDKCHSFVPHAERIRIAVSELSAIFPQNTNNDLIRHAL-------RSLNTSTVR 153 (187)
Q Consensus 81 P~~e~Vir~TE~vT~~IqeLl~aaq~~~~~~~fvpcae~I~~AV~el~alFP~~~~~e~vr~~L-------~~L~~~a~~ 153 (187)
-+..|+|.+.+.|.....+|.+-++.....-.=-.|-..+......|..+-.+.-..-.|++.. ..+...+.-
T Consensus 159 kTt~DLI~~AK~IAe~g~~l~k~ar~iA~qCtD~r~K~~LL~~lerIpti~~QLkIls~VKA~~lg~q~~s~~~~~sa~e 238 (283)
T 3vf0_A 159 GTKRALIQCAKDIAKASDEVTRLAKEVAKQCTDKRIRTNLLQVCERIPTISTQLKILSTVKATMLGRTNISDEESEQATE 238 (283)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHTTBCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHhhhhhHHHHHHHHHHhcccccccccccchhhHHHHH
Confidence 7789999999999999999998888733211111223444444444444443333334455543 111122332
Q ss_pred HHHHh-hhhHHhHHHHHHHHHH
Q psy13624 154 LQAEC-AQLEGSAERVRSCAYN 174 (187)
Q Consensus 154 Lq~eC-~~~q~~t~qv~~cAYd 174 (187)
....| +++..++-++...||.
T Consensus 239 sLIqnAKNLM~aV~~tVka~ea 260 (283)
T 3vf0_A 239 MLVHNAQNLMQSVKETVREAEA 260 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 23334 6676677777777774
No 142
>1qkr_A Vinculin, tail domain; actin cytoskeleton, cell adhesion, helical bundle, lipid binding; 1.8A {Gallus gallus} SCOP: a.24.9.1 PDB: 3h2u_A 3h2v_A 1rke_B 3myi_A
Probab=23.48 E-value=82 Score=25.78 Aligned_cols=94 Identities=9% Similarity=0.044 Sum_probs=49.1
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHhccCCCCCCccchHHHHHHHHHHHHhhcCCCCCchHHHHHH-------HHhhhhhHH
Q psy13624 81 PQSEEVVRRTDQVTKRIQELAAHMRSSDKCHSFVPHAERIRIAVSELSAIFPQNTNNDLIRHAL-------RSLNTSTVR 153 (187)
Q Consensus 81 P~~e~Vir~TE~vT~~IqeLl~aaq~~~~~~~fvpcae~I~~AV~el~alFP~~~~~e~vr~~L-------~~L~~~a~~ 153 (187)
-+..|+|.+.+.|......|.+-++.....-.=..|-..+......|..+-.+.-.--.|++.. ..+..++.-
T Consensus 64 ~t~~dlI~~Ak~iAe~~~~l~k~ar~iA~qc~D~~~k~~Ll~~~~rI~t~~~QLkIls~VKA~~~g~~~~~~~~~~~a~e 143 (188)
T 1qkr_A 64 GNKRALIQCAKDIAKASDEVTRLAKEVAKQCTDKRIRTNLLQVCERIPTISTQLKILSTVKATMLGRTNISDEESEQATE 143 (188)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTCTTSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhhHHHHHHHHHHHhccccccccccccchhhHHHH
Confidence 6689999999999999999988887632211111222333333333333322222223333333 112222222
Q ss_pred HHHHh-hhhHHhHHHHHHHHHH
Q psy13624 154 LQAEC-AQLEGSAERVRSCAYN 174 (187)
Q Consensus 154 Lq~eC-~~~q~~t~qv~~cAYd 174 (187)
-...| +++..++-++...+|.
T Consensus 144 ~LIq~AkNLM~aV~~tVka~~~ 165 (188)
T 1qkr_A 144 MLVHNAQNLMQSVKETVREAEA 165 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 22334 6666667777777764
No 143
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=23.35 E-value=87 Score=23.41 Aligned_cols=30 Identities=20% Similarity=0.411 Sum_probs=22.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy13624 6 HITHLNNEIAKLKTQVQQVIGENETLKAAL 35 (187)
Q Consensus 6 ~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~ 35 (187)
.|.+++-.|..|+.+|+.+.+.|..|...+
T Consensus 39 Ei~elrr~iq~L~~el~~l~~~~~sLE~~l 68 (131)
T 3tnu_A 39 EISELRRTMQNLEIELQSQLSMKASLENSL 68 (131)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 456788888888888888888888777554
No 144
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=23.19 E-value=98 Score=21.47 Aligned_cols=27 Identities=22% Similarity=0.281 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhhc
Q psy13624 12 NEIAKLKTQVQQVIGENETLKAALNAR 38 (187)
Q Consensus 12 ~ei~~Lq~~i~~L~~EN~~Lk~~~~~~ 38 (187)
.-|+.|+..+..-..|+.+|+.+++-.
T Consensus 25 e~I~eLE~~L~~kd~eI~eLr~~LdK~ 51 (67)
T 1zxa_A 25 ERIKELEKRLSEKEEEIQELKRKLHKC 51 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666677777666554
No 145
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=22.77 E-value=1e+02 Score=22.60 Aligned_cols=23 Identities=13% Similarity=0.463 Sum_probs=13.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcc
Q psy13624 84 EEVVRRTDQVTKRIQELAAHMRS 106 (187)
Q Consensus 84 e~Vir~TE~vT~~IqeLl~aaq~ 106 (187)
+-+-+|.+.+.++|..|-.....
T Consensus 91 ~~l~~r~~~l~~~~~~l~~~l~~ 113 (133)
T 1fxk_C 91 ESIKSQKNELESTLQKMGENLRA 113 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666555543
No 146
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=22.61 E-value=1.2e+02 Score=20.43 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHH
Q psy13624 10 LNNEIAKLKTQVQQVIGENETLKA 33 (187)
Q Consensus 10 l~~ei~~Lq~~i~~L~~EN~~Lk~ 33 (187)
|=+.+=.|+-+|+.|+.||..++.
T Consensus 8 lVDtVYaLkDqV~eL~qe~k~m~k 31 (56)
T 2w6b_A 8 LVDTVYALKDEVQELRQDNKKMKK 31 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455556666666666666664
No 147
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=22.33 E-value=1.5e+02 Score=20.60 Aligned_cols=32 Identities=9% Similarity=0.232 Sum_probs=23.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhhhHHHHHHHh
Q psy13624 5 AHITHLNNEIAKLKTQVQQVIGENETLKAALN 36 (187)
Q Consensus 5 a~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~~ 36 (187)
.++..+..+|..|...+..++.+-..|+..+.
T Consensus 72 ~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~ 103 (107)
T 1fxk_A 72 EKLETLQLREKTIERQEERVMKKLQEMQVNIQ 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557777888888888888888888876553
No 148
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=21.88 E-value=1.5e+02 Score=20.84 Aligned_cols=30 Identities=17% Similarity=0.264 Sum_probs=15.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy13624 6 HITHLNNEIAKLKTQVQQVIGENETLKAAL 35 (187)
Q Consensus 6 ~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~ 35 (187)
++.++..+|..|...+..+..+...|+..+
T Consensus 72 ~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~ 101 (112)
T 1l8d_A 72 DLNNSKNTLAKLIDRKSELERELRRIDMEI 101 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555555555555554443
No 149
>2jx0_A ARF GTPase-activating protein GIT1; paxillin binding domain homologue, ANK repeat, cytoplasm, GTPase activation, metal-binding; NMR {Rattus norvegicus}
Probab=21.84 E-value=1.6e+02 Score=23.03 Aligned_cols=57 Identities=16% Similarity=0.167 Sum_probs=33.9
Q ss_pred CCCCChhhHHHHHHHHHHH---HHHHHHHhccCCC---------CCCccchHHHHHHHHHHHHhhcCCC
Q psy13624 78 TRMPQSEEVVRRTDQVTKR---IQELAAHMRSSDK---------CHSFVPHAERIRIAVSELSAIFPQN 134 (187)
Q Consensus 78 ~~~P~~e~Vir~TE~vT~~---IqeLl~aaq~~~~---------~~~fvpcae~I~~AV~el~alFP~~ 134 (187)
|..|..|+|...-.+++.. ||-=+...|.+.. ......||+.|..|-..|+.+|-++
T Consensus 64 p~~p~~etvr~sL~~L~~~a~~Lq~EC~~~q~~~~~~~~~iq~~tqqVi~cAYdIAkAaK~Lvt~~~~~ 132 (135)
T 2jx0_A 64 PKRPALEPVRSSLRLLNASAYRLQSECRKTVPPEPGAPVDFQLLTQQVIQCAYDIAKAAKQLVTITTRE 132 (135)
T ss_dssp CSSBCCHHHHHHHHHHHHHHHHHHHHHHSCCCSCTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHccCCCcccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4455667776666666543 3333344443220 1245678899999988888887543
No 150
>3l39_A Putative PHOU-like phosphate regulatory protein; BT4638, structural genomics, joint center for structural genomics, JCSG; 1.93A {Bacteroides thetaiotaomicron}
Probab=21.64 E-value=1.9e+02 Score=23.13 Aligned_cols=27 Identities=11% Similarity=-0.029 Sum_probs=20.7
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHhcc
Q psy13624 80 MPQSEEVVRRTDQVTKRIQELAAHMRS 106 (187)
Q Consensus 80 ~P~~e~Vir~TE~vT~~IqeLl~aaq~ 106 (187)
-.|++-+...++.+..+...|-..+..
T Consensus 26 ~~ff~ll~~~a~~v~~~a~~L~~~l~~ 52 (227)
T 3l39_A 26 PKFFPLLKQLSDVLSASSVLLVESMEH 52 (227)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 467788888888888888887777763
No 151
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=21.48 E-value=1.3e+02 Score=24.53 Aligned_cols=29 Identities=24% Similarity=0.266 Sum_probs=15.3
Q ss_pred HHhHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy13624 7 ITHLNNEIAKLKTQVQQVIGENETLKAAL 35 (187)
Q Consensus 7 iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~ 35 (187)
|..+...++.|+..+.+|..|...+|..+
T Consensus 51 L~~~Ek~~~~L~~~~~~L~~E~e~~k~K~ 79 (189)
T 2v71_A 51 LVQAEQRNRDLQADNQRLKYEVEALKEKL 79 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555444
No 152
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=21.20 E-value=1.1e+02 Score=21.32 Aligned_cols=38 Identities=11% Similarity=0.169 Sum_probs=30.4
Q ss_pred chHHHHHHHHHHHHhhcCCCCCchHHHHHHHHhhhhhHH
Q psy13624 115 PHAERIRIAVSELSAIFPQNTNNDLIRHALRSLNTSTVR 153 (187)
Q Consensus 115 pcae~I~~AV~el~alFP~~~~~e~vr~~L~~L~~~a~~ 153 (187)
.++-.+-..|+.+..|||... ..-|+.+|+.-+.+.++
T Consensus 8 ~~~~~l~s~I~qV~DLfPdLG-~gfi~~~L~~y~~nvE~ 45 (71)
T 2di0_A 8 MCGVELDSLISQVKDLLPDLG-EGFILACLEYYHYDPEQ 45 (71)
T ss_dssp CSSHHHHHHHHHHHHHCCSSC-HHHHHHHHHHTTTCHHH
T ss_pred CcHHHHHHHHHHHHHHcccCC-HHHHHHHHHHhCCCHHH
Confidence 367788899999999999976 88888888887655443
No 153
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=20.84 E-value=1.1e+02 Score=22.97 Aligned_cols=21 Identities=19% Similarity=0.322 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHhhhHHHH
Q psy13624 12 NEIAKLKTQVQQVIGENETLK 32 (187)
Q Consensus 12 ~ei~~Lq~~i~~L~~EN~~Lk 32 (187)
.+++.||.+|.+|..+|..|+
T Consensus 35 ~~~~~Lq~El~~lr~~~~~l~ 55 (111)
T 2v66_B 35 KQVSVLEDDLSQTRAIKEQLH 55 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666655
No 154
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=20.82 E-value=1.1e+02 Score=27.24 Aligned_cols=27 Identities=30% Similarity=0.288 Sum_probs=14.7
Q ss_pred HHhHHHHHHHHHHHHHHHHhhhHHHHH
Q psy13624 7 ITHLNNEIAKLKTQVQQVIGENETLKA 33 (187)
Q Consensus 7 iq~l~~ei~~Lq~~i~~L~~EN~~Lk~ 33 (187)
+.+|++++..|+.++++++.|+..++.
T Consensus 12 l~~~~~~~~~l~~~~~~~~~~~~~~~~ 38 (412)
T 3u06_A 12 VVHLRQRTEELLRCNEQQAAELETCKE 38 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555553
No 155
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=20.27 E-value=1.9e+02 Score=18.92 Aligned_cols=32 Identities=22% Similarity=0.172 Sum_probs=23.0
Q ss_pred hhHHHHhHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy13624 3 SEAHITHLNNEIAKLKTQVQQVIGENETLKAA 34 (187)
Q Consensus 3 Sea~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~ 34 (187)
||.+|-.|++-...|=..|+.|+.-.+.+.+.
T Consensus 2 aeq~l~kLKe~n~~L~~kv~~Le~~c~~~eQE 33 (48)
T 3vmx_A 2 SERQILRLKQINIQLATKIQHLEFSCSEKEQE 33 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHccHHHHH
Confidence 67778888887777777777777666655543
Done!