RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy13624
         (187 letters)



>2jx0_A ARF GTPase-activating protein GIT1; paxillin binding domain
           homologue, ANK repeat, cytoplasm, GTPase activation,
           metal-binding; NMR {Rattus norvegicus}
          Length = 135

 Score = 99.1 bits (246), Expect = 3e-27
 Identities = 45/119 (37%), Positives = 72/119 (60%), Gaps = 12/119 (10%)

Query: 80  MPQSEEVVRRTDQVTKRIQELAAHMRSSDKCHSFVPHAERIRIAVSELSAIFPQNTNNDL 139
           +P +E+V+ +T+QVTK IQEL    +      SFVP +E+I +AV+E++++FP+    + 
Sbjct: 13  LPSTEDVILKTEQVTKNIQELLRAAQEFKH-DSFVPCSEKIHLAVTEMASLFPKRPALEP 71

Query: 140 IRHALRSLNTSTVRLQAECAQL-----------EGSAERVRSCAYNMAKANKQLLTQFQ 187
           +R +LR LN S  RLQ+EC +            +   ++V  CAY++AKA KQL+T   
Sbjct: 72  VRSSLRLLNASAYRLQSECRKTVPPEPGAPVDFQLLTQQVIQCAYDIAKAAKQLVTITT 130


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 37.7 bits (87), Expect = 0.001
 Identities = 20/161 (12%), Positives = 55/161 (34%), Gaps = 55/161 (34%)

Query: 46  PPETEPVSDSSWCSPQRPASMYNVTVNAQSTTTRMPQSEEVVRRTDQVTKRIQELAAHMR 105
           PP    + DS   +   P+ M +++         + Q        +QV   + +  +H  
Sbjct: 320 PPSI--LEDSLENNEGVPSPMLSIS--------NLTQ--------EQVQDYVNKTNSH-- 359

Query: 106 SSDKCHSFVPHAERIRIAVSELSAIFPQNTNNDLI----RHALRSLNTSTVRLQAEC--- 158
                   +P  +++ I++         N   +L+      +L  LN +  + +A     
Sbjct: 360 --------LPAGKQVEISL--------VNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLD 403

Query: 159 -AQLEGSAERVR--------SCAYN---MAKANKQLLTQFQ 187
            +++  S  +++        +  ++   +  A+  +     
Sbjct: 404 QSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLV 444


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 28.4 bits (62), Expect = 0.88
 Identities = 11/63 (17%), Positives = 17/63 (26%), Gaps = 37/63 (58%)

Query: 12 NEIAKLKTQVQQVIGENETLKAALNARNSATHHQPPETEPVSDSSWCSPQRPASMYNVTV 71
            + KL+           +LK  L A                DS+      PA    + +
Sbjct: 20 QALKKLQA----------SLK--LYA--------D-------DSA------PA----LAI 42

Query: 72 NAQ 74
           A 
Sbjct: 43 KAT 45


>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA
          complex, transcription/DNA complex; 3.00A {Homo
          sapiens} SCOP: h.1.3.1
          Length = 61

 Score = 24.6 bits (54), Expect = 6.9
 Identities = 9/34 (26%), Positives = 16/34 (47%)

Query: 4  EAHITHLNNEIAKLKTQVQQVIGENETLKAALNA 37
          E     L++   +L+++V  +  E   LK  L A
Sbjct: 28 EKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLLLA 61


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.313    0.121    0.338 

Gapped
Lambda     K      H
   0.267   0.0754    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,501,452
Number of extensions: 127646
Number of successful extensions: 379
Number of sequences better than 10.0: 1
Number of HSP's gapped: 374
Number of HSP's successfully gapped: 19
Length of query: 187
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 99
Effective length of database: 4,244,745
Effective search space: 420229755
Effective search space used: 420229755
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.5 bits)