RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13624
         (187 letters)



>d2g0ua1 a.2.20.1 (A:1-84) BsaL needle protein {Burkholderia
          pseudomallei [TaxId: 28450]}
          Length = 84

 Score = 27.6 bits (61), Expect = 0.28
 Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 9/59 (15%)

Query: 22 QQVIGENETLKAALNARNSATHHQPPETEPVSDSSWCSPQRPASMYNVTVNAQSTTTRM 80
            V   N+ L+ A                P   ++  + Q   S YN+  NAQS+  + 
Sbjct: 27 DGVKDLNKQLQDAQANL---------TKNPSDPTALANYQMIMSEYNLYRNAQSSAVKS 76


>d1ixsa_ a.5.1.1 (A:) DNA helicase RuvA subunit, C-terminal domain
           {Thermus thermophilus [TaxId: 274]}
          Length = 50

 Score = 22.6 bits (48), Expect = 9.6
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 119 RIRIAVSELSAIFPQNTNNDLIRHALRSL 147
           + R  V +L A  P+    DLI+ AL+ L
Sbjct: 21  QARAVVLDLLAQNPKARAQDLIKEALKRL 49


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.121    0.338 

Gapped
Lambda     K      H
   0.267   0.0597    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 582,044
Number of extensions: 22068
Number of successful extensions: 73
Number of sequences better than 10.0: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 11
Length of query: 187
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 107
Effective length of database: 1,309,196
Effective search space: 140083972
Effective search space used: 140083972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.3 bits)