BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13625
(322 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1D5V|A Chain A, Solution Structure Of The Forkhead Domain Of The
Adipocyte- Transcription Factor Freac-11 (S12)
Length = 94
Score = 188 bits (478), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 83/93 (89%), Positives = 91/93 (97%)
Query: 61 MVKPPYSYIALIAMAIQNAPDKRCTLNGIYQFIMERFPYYRENKQGWQNSIRHNLSLNEC 120
+VKPPYSYIALI MAIQNAP+K+ TLNGIYQFIM+RFP+YRENKQGWQNSIRHNLSLNEC
Sbjct: 2 LVKPPYSYIALITMAIQNAPEKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSLNEC 61
Query: 121 FVKIPRDDKKPGKGSYWTLDPDSYNMFDNGSYL 153
FVK+PRDDKKPGKGSYWTLDPDSYNMF+NGS+L
Sbjct: 62 FVKVPRDDKKPGKGSYWTLDPDSYNMFENGSFL 94
>pdb|1VTN|C Chain C, Co-Crystal Structure Of The Hnf-3FORK HEAD DNA-Recognition
Motif Resembles Histone H5
Length = 102
Score = 151 bits (382), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 69/99 (69%), Positives = 80/99 (80%)
Query: 62 VKPPYSYIALIAMAIQNAPDKRCTLNGIYQFIMERFPYYRENKQGWQNSIRHNLSLNECF 121
KPPYSYI+LI MAIQ AP K TL+ IYQ+IM+ FPYYREN+Q WQNSIRH+LS N+CF
Sbjct: 2 AKPPYSYISLITMAIQQAPGKMLTLSEIYQWIMDLFPYYRENQQRWQNSIRHSLSFNDCF 61
Query: 122 VKIPRDDKKPGKGSYWTLDPDSYNMFDNGSYLRRRRRFK 160
VK+ R KPGKGSYW L P S NMF+NG YLRR++RFK
Sbjct: 62 VKVARSPDKPGKGSYWALHPSSGNMFENGCYLRRQKRFK 100
>pdb|2HDC|A Chain A, Structure Of Transcription Factor GenesisDNA COMPLEX
Length = 97
Score = 151 bits (381), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 69/96 (71%), Positives = 79/96 (82%)
Query: 63 KPPYSYIALIAMAIQNAPDKRCTLNGIYQFIMERFPYYRENKQGWQNSIRHNLSLNECFV 122
KPPYSYIALI MAI +P K+ TL+GI +FI RFPYYRE WQNSIRHNLSLN+CFV
Sbjct: 2 KPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFV 61
Query: 123 KIPRDDKKPGKGSYWTLDPDSYNMFDNGSYLRRRRR 158
KIPR+ PGKG+YWTLDP S +MFDNGS+LRRR+R
Sbjct: 62 KIPREPGNPGKGNYWTLDPQSEDMFDNGSFLRRRKR 97
>pdb|2HFH|A Chain A, The Nmr Structures Of A Winged Helix Protein: Genesis, 20
Structures
Length = 109
Score = 141 bits (356), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 65/90 (72%), Positives = 73/90 (81%)
Query: 62 VKPPYSYIALIAMAIQNAPDKRCTLNGIYQFIMERFPYYRENKQGWQNSIRHNLSLNECF 121
VKPPYSYIALI MAI +P K+ TL+GI +FI RFPYYRE WQNSIRHNLSLN+CF
Sbjct: 2 VKPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCF 61
Query: 122 VKIPRDDKKPGKGSYWTLDPDSYNMFDNGS 151
VKIPR+ PGKG+YWTLDP S +MFDNGS
Sbjct: 62 VKIPREPGNPGKGNYWTLDPQSEDMFDNGS 91
>pdb|2C6Y|A Chain A, Crystal Structure Of Interleukin Enhancer-Binding Factor 1
Bound To Dna
pdb|2C6Y|B Chain B, Crystal Structure Of Interleukin Enhancer-Binding Factor 1
Bound To Dna
Length = 111
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 59/106 (55%), Positives = 73/106 (68%), Gaps = 1/106 (0%)
Query: 53 QQMVAGKDMVKPPYSYIALIAMAIQNAPDKRCTLNGIYQFIMERFPYYRENKQGWQNSIR 112
QQM G D KPPYSY LI AI APDK+ TLNGIY I + +PYYR +GWQNSIR
Sbjct: 7 QQMGRGSD-SKPPYSYAQLIVQAITMAPDKQLTLNGIYTHITKNYPYYRTADKGWQNSIR 65
Query: 113 HNLSLNECFVKIPRDDKKPGKGSYWTLDPDSYNMFDNGSYLRRRRR 158
HNLSLN F+K+PR ++PGKGS+W +DP S + ++ +RR R
Sbjct: 66 HNLSLNRYFIKVPRSQEEPGKGSFWRIDPASESKLIEQAFRKRRPR 111
>pdb|1JXS|A Chain A, Solution Structure Of The Dna-Binding Domain Of
Interleukin Enhancer Binding Factor
Length = 98
Score = 119 bits (297), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 54/96 (56%), Positives = 68/96 (70%)
Query: 63 KPPYSYIALIAMAIQNAPDKRCTLNGIYQFIMERFPYYRENKQGWQNSIRHNLSLNECFV 122
KPPYSY LI AI APDK+ TLNGIY I + +PYYR +GWQNSIRHNLSLN F+
Sbjct: 3 KPPYSYAQLIVQAITMAPDKQLTLNGIYTHITKNYPYYRTADKGWQNSIRHNLSLNRYFI 62
Query: 123 KIPRDDKKPGKGSYWTLDPDSYNMFDNGSYLRRRRR 158
K+PR ++PGKGS+W +DP S + ++ +RR R
Sbjct: 63 KVPRSQEEPGKGSFWRIDPASESKLIEQAFRKRRPR 98
>pdb|2A3S|A Chain A, Solution Structure And Dynamics Of Dna-Binding Domain Of
Myocyte Nuclear Factor
pdb|2D2W|A Chain A, Solution Structure And Dynamics Of The Dna-Binding Domain
Of Myocyte Nuclear Factor
Length = 101
Score = 115 bits (288), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 51/96 (53%), Positives = 68/96 (70%)
Query: 63 KPPYSYIALIAMAIQNAPDKRCTLNGIYQFIMERFPYYRENKQGWQNSIRHNLSLNECFV 122
KPPYSY LI AI +A D++ TL+GIY I + +PYYR +GWQNSIRHNLSLN F+
Sbjct: 3 KPPYSYAQLIVQAISSAQDRQLTLSGIYAHITKHYPYYRTADKGWQNSIRHNLSLNRYFI 62
Query: 123 KIPRDDKKPGKGSYWTLDPDSYNMFDNGSYLRRRRR 158
K+PR ++PGKGS+W +DP S ++ +RR+R
Sbjct: 63 KVPRSQEEPGKGSFWRIDPASEAKLVEQAFRKRRQR 98
>pdb|1KQ8|A Chain A, Solution Structure Of Winged Helix Protein Hfh-1
Length = 100
Score = 112 bits (281), Expect = 2e-25, Method: Composition-based stats.
Identities = 52/98 (53%), Positives = 72/98 (73%), Gaps = 1/98 (1%)
Query: 63 KPPYSYIALIAMAIQNAPDKRCTLNGIYQFIMERFPYYRENKQGWQNSIRHNLSLNECFV 122
KPPYSYIALI MAI+++ R TL I +++M +FP++R + GW+NS+RHNLSLN+CFV
Sbjct: 2 KPPYSYIALITMAIRDSAGGRLTLAEINEYLMGKFPFFRGSYTGWRNSVRHNLSLNDCFV 61
Query: 123 KIPRDDKKP-GKGSYWTLDPDSYNMFDNGSYLRRRRRF 159
K+ RD +P GK +YW L+P+S F +G + RRR R
Sbjct: 62 KVLRDPSRPWGKDNYWMLNPNSEYTFADGVFRRRRYRL 99
>pdb|3G73|A Chain A, Structure Of The Foxm1 Dna Binding
pdb|3G73|B Chain B, Structure Of The Foxm1 Dna Binding
Length = 142
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 55/82 (67%), Gaps = 4/82 (4%)
Query: 63 KPPYSYIALIAMAIQNAPDKRCTLNGIYQFIMERFPYYRE-NKQGWQNSIRHNLSLNECF 121
+PPYSY+A+I AI + KR TL IY +I + FPY++ K GW+NSIRHNLSL++ F
Sbjct: 18 RPPYSYMAMIQFAINSTERKRMTLKDIYTWIEDHFPYFKHIAKPGWKNSIRHNLSLHDMF 77
Query: 122 VKIPRDDKKPGKGSYWTLDPDS 143
V R+ GK S+WT+ P +
Sbjct: 78 V---RETSANGKVSFWTIHPSA 96
>pdb|2A07|F Chain F, Crystal Structure Of Foxp2 Bound Specifically To Dna.
pdb|2A07|G Chain G, Crystal Structure Of Foxp2 Bound Specifically To Dna.
pdb|2A07|H Chain H, Crystal Structure Of Foxp2 Bound Specifically To Dna.
pdb|2A07|I Chain I, Crystal Structure Of Foxp2 Bound Specifically To Dna.
pdb|2A07|J Chain J, Crystal Structure Of Foxp2 Bound Specifically To Dna.
pdb|2A07|K Chain K, Crystal Structure Of Foxp2 Bound Specifically To Dna.
pdb|2AS5|F Chain F, Structure Of The Dna Binding Domains Of Nfat And Foxp2
Bound Specifically To Dna.
pdb|2AS5|G Chain G, Structure Of The Dna Binding Domains Of Nfat And Foxp2
Bound Specifically To Dna
Length = 93
Score = 80.1 bits (196), Expect = 1e-15, Method: Composition-based stats.
Identities = 35/84 (41%), Positives = 54/84 (64%), Gaps = 5/84 (5%)
Query: 61 MVKPPYSYIALIAMAIQNAPDKRCTLNGIYQFIMERFPYYRENKQGWQNSIRHNLSLNEC 120
+V+PP++Y LI AI + D++ TLN IY + F Y+R N W+N++RHNLSL++C
Sbjct: 1 IVRPPFTYATLIRQAIMESSDRQLTLNEIYSWFTRTFAYFRRNAATWKNAVRHNLSLHKC 60
Query: 121 FVKIPRDDKKPGKGSYWTLDPDSY 144
FV++ + KG+ WT+D Y
Sbjct: 61 FVRV-----ENVKGAVWTVDEVEY 79
>pdb|2KIU|A Chain A, Solution Structure And Backbone Dynamics Of The
Dna-Binding Domain Of Foxp1: Insight Into Its Domain
Swapping
Length = 87
Score = 77.4 bits (189), Expect = 1e-14, Method: Composition-based stats.
Identities = 35/79 (44%), Positives = 54/79 (68%), Gaps = 5/79 (6%)
Query: 62 VKPPYSYIALIAMAIQNAPDKRCTLNGIYQFIMERFPYYRENKQGWQNSIRHNLSLNECF 121
V+PP++Y +LI AI +P+K+ TLN IY + FPY+R N W+N++RHNLSL++ F
Sbjct: 3 VRPPFTYASLIRQAILESPEKQLTLNEIYNWFTRMFPYFRRNAATWKNAVRHNLSLHKYF 62
Query: 122 VKIPRDDKKPGKGSYWTLD 140
V++ + KG+ WT+D
Sbjct: 63 VRV-----ENVKGAVWTVD 76
>pdb|3QRF|F Chain F, Structure Of A Domain-Swapped Foxp3 Dimer
pdb|3QRF|G Chain G, Structure Of A Domain-Swapped Foxp3 Dimer
pdb|3QRF|H Chain H, Structure Of A Domain-Swapped Foxp3 Dimer
pdb|3QRF|I Chain I, Structure Of A Domain-Swapped Foxp3 Dimer
Length = 82
Score = 77.0 bits (188), Expect = 1e-14, Method: Composition-based stats.
Identities = 34/79 (43%), Positives = 53/79 (67%), Gaps = 5/79 (6%)
Query: 62 VKPPYSYIALIAMAIQNAPDKRCTLNGIYQFIMERFPYYRENKQGWQNSIRHNLSLNECF 121
++PP++Y LI AI AP+K+ TLN IY + F ++R + W+N+IRHNLSL++CF
Sbjct: 1 MRPPFTYATLIRWAILEAPEKQRTLNEIYHWFTRMFAFFRNHPATWKNAIRHNLSLHKCF 60
Query: 122 VKIPRDDKKPGKGSYWTLD 140
V++ + KG+ WT+D
Sbjct: 61 VRVESE-----KGAVWTVD 74
>pdb|1E17|A Chain A, Solution Structure Of The Dna Binding Domain Of The Human
Forkhead Transcription Factor Afx (Foxo4)
Length = 150
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 61/95 (64%), Gaps = 10/95 (10%)
Query: 67 SYIALIAMAIQNAPDKRCTLNGIYQFIMERFPYYRE-----NKQGWQNSIRHNLSLNECF 121
SY LI+ AI++AP+KR TL IY++++ PY+++ + GW+NSIRHNLSL+ F
Sbjct: 44 SYAELISQAIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLSLHSKF 103
Query: 122 VKIPRDDKKPGKGSYWTLDPDSYNMFDNGSYLRRR 156
+K+ ++ GK S+W L+P+ +G RRR
Sbjct: 104 IKV--HNEATGKSSWWMLNPEG---GKSGKAPRRR 133
>pdb|3L2C|A Chain A, Crystal Structure Of The Dna Binding Domain Of Foxo4 Bound
To Dna
Length = 110
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 56/81 (69%), Gaps = 7/81 (8%)
Query: 67 SYIALIAMAIQNAPDKRCTLNGIYQFIMERFPYYRE-----NKQGWQNSIRHNLSLNECF 121
SY LI+ AI++AP+KR TL IY++++ PY+++ + GW+NSIRHNLSL+ F
Sbjct: 28 SYAELISQAIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLSLHSKF 87
Query: 122 VKIPRDDKKPGKGSYWTLDPD 142
+K+ ++ GK S+W L+P+
Sbjct: 88 IKV--HNEATGKSSWWMLNPE 106
>pdb|2K86|A Chain A, Solution Structure Of Foxo3a Forkhead Domain
Length = 103
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 56/81 (69%), Gaps = 7/81 (8%)
Query: 67 SYIALIAMAIQNAPDKRCTLNGIYQFIMERFPYYRE-----NKQGWQNSIRHNLSLNECF 121
SY LI AI+++PDKR TL+ IY++++ PY+++ + GW+NSIRHNLSL+ F
Sbjct: 13 SYADLITRAIESSPDKRLTLSQIYEWMVRCVPYFKDKGDSNSSAGWKNSIRHNLSLHSRF 72
Query: 122 VKIPRDDKKPGKGSYWTLDPD 142
+++ ++ GK S+W ++PD
Sbjct: 73 MRV--QNEGTGKSSWWIINPD 91
>pdb|2UZK|A Chain A, Crystal Structure Of The Human Foxo3a-Dbd Bound To Dna
pdb|2UZK|C Chain C, Crystal Structure Of The Human Foxo3a-Dbd Bound To Dna
Length = 97
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 56/81 (69%), Gaps = 7/81 (8%)
Query: 67 SYIALIAMAIQNAPDKRCTLNGIYQFIMERFPYYRE-----NKQGWQNSIRHNLSLNECF 121
SY LI AI+++PDKR TL+ IY++++ PY+++ + GW+NSIRHNLSL+ F
Sbjct: 5 SYADLITRAIESSPDKRLTLSQIYEWMVRCVPYFKDKGDSNSSAGWKNSIRHNLSLHSRF 64
Query: 122 VKIPRDDKKPGKGSYWTLDPD 142
+++ ++ GK S+W ++PD
Sbjct: 65 MRV--QNEGTGKSSWWIINPD 83
>pdb|3CO7|C Chain C, Crystal Structure Of Foxo1 Dbd Bound To Dbe2 Dna
pdb|3CO7|F Chain F, Crystal Structure Of Foxo1 Dbd Bound To Dbe2 Dna
pdb|3COA|C Chain C, Crystal Structure Of Foxo1 Dbd Bound To Ire Dna
pdb|3COA|F Chain F, Crystal Structure Of Foxo1 Dbd Bound To Ire Dna
Length = 117
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 56/81 (69%), Gaps = 7/81 (8%)
Query: 67 SYIALIAMAIQNAPDKRCTLNGIYQFIMERFPYYRE-----NKQGWQNSIRHNLSLNECF 121
SY LI AI+++ +KR TL+ IY+++++ PY+++ + GW+NSIRHNLSL+ F
Sbjct: 15 SYADLITKAIESSAEKRLTLSQIYEWMVKSVPYFKDKGDSNSSAGWKNSIRHNLSLHSKF 74
Query: 122 VKIPRDDKKPGKGSYWTLDPD 142
+++ ++ GK S+W L+P+
Sbjct: 75 IRV--QNEGTGKSSWWMLNPE 93
>pdb|3CO6|C Chain C, Crystal Structure Of Foxo1 Dbd Bound To Dbe1 Dna
Length = 100
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 56/81 (69%), Gaps = 7/81 (8%)
Query: 67 SYIALIAMAIQNAPDKRCTLNGIYQFIMERFPYYRE-----NKQGWQNSIRHNLSLNECF 121
SY LI AI+++ +KR TL+ IY+++++ PY+++ + GW+NSIRHNLSL+ F
Sbjct: 15 SYADLITKAIESSAEKRLTLSQIYEWMVKSVPYFKDKGDSNSSAGWKNSIRHNLSLHSKF 74
Query: 122 VKIPRDDKKPGKGSYWTLDPD 142
+++ ++ GK S+W L+P+
Sbjct: 75 IRV--QNEGTGKSSWWMLNPE 93
>pdb|1F0X|A Chain A, Crystal Structure Of D-Lactate Dehydrogenase, A Peripheral
Membrane Respiratory Enzyme.
pdb|1F0X|B Chain B, Crystal Structure Of D-Lactate Dehydrogenase, A Peripheral
Membrane Respiratory Enzyme
Length = 571
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 162 KDVMKEKEEAIKRQHVHQAHLLQQENILKKAEEKLMSI-KELKPCKREPSNNLSSSCMGG 220
+DV+ + + HV L + E +L L S+ K LKP REP + + SSC+G
Sbjct: 94 RDVVIISTLRLDKLHV----LGKGEQVLAYPGTTLYSLEKALKPLGREPHSVIGSSCIGA 149
Query: 221 SHL-DIKPNTGDQM 233
S + I N+G +
Sbjct: 150 SVIGGICNNSGGSL 163
>pdb|2WW8|A Chain A, Structure Of The Pilus Adhesin (Rrga) From Streptococcus
Pneumoniae
Length = 893
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 7/43 (16%)
Query: 121 FVKIPRDDKKPGKGSYWTLD------PDSYNMFD-NGSYLRRR 156
F+K+ ++DKKP +G+ ++L PD Y D NG+Y R
Sbjct: 740 FIKVNKNDKKPLRGAVFSLQKQHPDYPDIYGAIDQNGTYQNVR 782
>pdb|3EGD|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22 AND
BOUND To The Transport Signal Sequence Of Vesicular
Stomatitis Virus Glycoprotein
pdb|3EGX|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22B AND
Bound To The Transport Signal Sequence Of The Snare
Protein Bet1
Length = 748
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 293 IPGNANCQIGFRSAPTVVHYYQHQHDISK 321
+PGN +IGF + + +H+Y Q +S+
Sbjct: 191 LPGNTRTKIGFITFDSTIHFYGLQESLSQ 219
>pdb|2NUP|B Chain B, Crystal Structure Of The Human Sec23a24A HETERODIMER,
Complexed With The Snare Protein Sec22b
pdb|2NUT|B Chain B, Crystal Structure Of The Human Sec23a24A HETERODIMER,
Complexed With The Snare Protein Sec22b
Length = 753
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 293 IPGNANCQIGFRSAPTVVHYYQHQHDISK 321
+PGN +IGF + + +H+Y Q +S+
Sbjct: 196 LPGNTRTKIGFITFDSTIHFYGLQESLSQ 224
>pdb|3EH1|A Chain A, Crystal Structure Of The Human Copii-Coat Protein Sec24b
Length = 751
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 9/29 (31%), Positives = 19/29 (65%)
Query: 293 IPGNANCQIGFRSAPTVVHYYQHQHDISK 321
+PG++ +IGF + + +H+Y Q +S+
Sbjct: 193 LPGDSRTRIGFMTFDSTIHFYNLQEGLSQ 221
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,684,671
Number of Sequences: 62578
Number of extensions: 444162
Number of successful extensions: 1042
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1005
Number of HSP's gapped (non-prelim): 25
length of query: 322
length of database: 14,973,337
effective HSP length: 99
effective length of query: 223
effective length of database: 8,778,115
effective search space: 1957519645
effective search space used: 1957519645
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)