Query psy13625
Match_columns 322
No_of_seqs 196 out of 831
Neff 3.8
Searched_HMMs 46136
Date Fri Aug 16 16:04:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13625.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13625hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3563|consensus 100.0 7.3E-42 1.6E-46 330.9 6.6 103 61-163 171-273 (454)
2 PF00250 Fork_head: Fork head 100.0 6.2E-39 1.3E-43 260.5 1.5 96 63-158 1-96 (96)
3 cd00059 FH Forkhead (FH), also 100.0 1.5E-37 3.2E-42 244.7 7.4 78 63-140 1-78 (78)
4 KOG3562|consensus 100.0 9.5E-38 2.1E-42 287.5 4.0 103 61-163 11-113 (277)
5 smart00339 FH FORKHEAD. FORKHE 100.0 1.3E-36 2.9E-41 244.0 6.9 86 63-148 1-86 (89)
6 KOG2294|consensus 100.0 4.5E-36 9.8E-41 289.5 -1.4 105 59-163 126-233 (454)
7 KOG4385|consensus 99.9 7.9E-23 1.7E-27 204.2 2.8 103 36-143 336-443 (581)
8 COG5025 Transcription factor o 99.8 8.9E-22 1.9E-26 202.4 3.8 102 51-152 325-426 (610)
9 COG5025 Transcription factor o 99.5 5E-15 1.1E-19 152.9 -1.1 95 57-151 80-174 (610)
10 PF00538 Linker_histone: linke 94.7 0.051 1.1E-06 42.2 4.4 35 63-99 2-37 (77)
11 smart00526 H15 Domain in histo 91.8 0.36 7.8E-06 36.3 4.7 32 67-98 6-38 (66)
12 cd00073 H15 linker histone 1 a 90.1 0.46 9.9E-06 38.0 4.1 34 67-100 6-40 (88)
13 PF05066 HARE-HTH: HB1, ASXL, 80.8 1.3 2.8E-05 33.7 2.2 57 66-124 1-62 (72)
14 PF14338 Mrr_N: Mrr N-terminal 72.2 3.1 6.8E-05 33.1 2.4 73 67-144 1-85 (92)
15 KOG4012|consensus 56.3 13 0.00029 35.7 3.7 37 66-102 45-82 (243)
16 COG2958 Uncharacterized protei 50.4 20 0.00043 35.4 3.9 59 67-126 6-76 (307)
17 PF12872 OST-HTH: OST-HTH/LOTU 46.8 36 0.00078 25.2 4.1 57 64-121 2-61 (74)
18 cd06649 PKc_MEK2 Catalytic dom 30.3 27 0.00058 32.5 1.3 48 68-120 277-327 (331)
19 PF14960 ATP_synth_reg: ATP sy 26.8 20 0.00044 26.8 -0.1 17 286-302 15-31 (49)
20 cd05071 PTKc_Src Catalytic dom 26.7 71 0.0015 28.2 3.3 34 65-98 229-262 (262)
21 PF12317 IFT46_B_C: Intraflage 25.8 46 0.001 31.7 2.0 31 118-148 52-82 (214)
22 PF10264 Stork_head: Winged he 25.4 1.1E+02 0.0023 25.1 3.8 34 68-101 12-47 (80)
23 KOG1528|consensus 22.3 37 0.0008 34.2 0.7 32 113-144 109-141 (351)
24 cd08229 STKc_Nek7 Catalytic do 22.1 94 0.002 27.1 3.2 30 67-96 236-265 (267)
25 PRK09462 fur ferric uptake reg 20.6 1.4E+02 0.003 25.5 3.8 30 70-99 20-49 (148)
No 1
>KOG3563|consensus
Probab=100.00 E-value=7.3e-42 Score=330.86 Aligned_cols=103 Identities=67% Similarity=1.198 Sum_probs=100.8
Q ss_pred CCCCCChHHHHHHHHHhcCCCCcccHHHHHHHHHhhCCccccCCCCccccccccccccccccccccCCCCCCCceeeEeC
Q psy13625 61 MVKPPYSYIALIAMAIQNAPDKRCTLNGIYQFIMERFPYYRENKQGWQNSIRHNLSLNECFVKIPRDDKKPGKGSYWTLD 140 (322)
Q Consensus 61 ~~KPPySYa~LIa~AI~sSp~krLTL~EIYewI~~~fPYYr~~~~GWKNSIRHNLSLnkcFvKVpR~~~~pGKGs~Wtld 140 (322)
-.||||||+.||+|||+.+|.|+|||+|||+||++.|||||.+.+.|||||||.||+|+||+||+|..++||||+||+|+
T Consensus 171 haKPPYSYISLITMAIQ~~pskmLTLSEIYqwIMDLFPyYrqNQQRWQNSIRHSLSFNDCFVKVaRSPDKPGKGSfWTLH 250 (454)
T KOG3563|consen 171 HAKPPYSYISLITMAIQQAPSKMLTLSEIYQWIMDLFPYYRQNQQRWQNSIRHSLSFNDCFVKVARSPDKPGKGSFWTLH 250 (454)
T ss_pred CCCCChhHHHHHHHHHHhCCccceeHHHHHHHHHHhhhHhhhhHHHHHhhhhhhccccceeeeccCCCCCCCCccceeec
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccCCchhhhhhccchhh
Q psy13625 141 PDSYNMFDNGSYLRRRRRFKKKD 163 (322)
Q Consensus 141 Pe~~~~f~~g~~~RrRkr~k~k~ 163 (322)
|++.+||++|+|+||+||||+++
T Consensus 251 pdsGNMFENGCYLRRQKRFK~ek 273 (454)
T KOG3563|consen 251 PDSGNMFENGCYLRRQKRFKCEK 273 (454)
T ss_pred CCcCcccccchhehhhhhhhhhh
Confidence 99999999999999999999864
No 2
>PF00250 Fork_head: Fork head domain; InterPro: IPR001766 The fork head protein of Drosophila melanogaster, a transcription factor that promotes terminal rather than segmental development, contains neither homeodomains nor zinc-fingers characteristic of other transcription factors []. Instead, it contains a distinct type of DNA-binding region, containing around 100 amino acids, which has since been identified in a number of transcription factors (including D. melanogaster FD1-5, mammalian HNF-3, human HTLF, Saccharomyces cerevisiae HCM1, etc.). This is referred to as the fork head domain but is also known as a 'winged helix' [, , ]. The fork head domain binds B-DNA as a monomer [], but shows no similarity to previously identified DNA-binding motifs. Although the domain is found in several different transcription factors, a common function is their involvement in early developmental decisions of cell fates during embryogenesis [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2UZK_A 2K86_A 1JXS_A 2C6Y_A 2A3S_A 2D2W_A 2KIU_A 1VTN_C 2A07_J 2AS5_F ....
Probab=100.00 E-value=6.2e-39 Score=260.45 Aligned_cols=96 Identities=65% Similarity=1.254 Sum_probs=89.7
Q ss_pred CCCChHHHHHHHHHhcCCCCcccHHHHHHHHHhhCCccccCCCCccccccccccccccccccccCCCCCCCceeeEeCCC
Q psy13625 63 KPPYSYIALIAMAIQNAPDKRCTLNGIYQFIMERFPYYRENKQGWQNSIRHNLSLNECFVKIPRDDKKPGKGSYWTLDPD 142 (322)
Q Consensus 63 KPPySYa~LIa~AI~sSp~krLTL~EIYewI~~~fPYYr~~~~GWKNSIRHNLSLnkcFvKVpR~~~~pGKGs~WtldPe 142 (322)
||||||++||++||+++|+++|||+|||+||+++||||+.+.+|||||||||||+|+||+||++..+++|||+||+|+|+
T Consensus 1 KPp~sY~~LI~~Ai~~sp~~~Ltl~eIy~~i~~~~pyyr~~~~~WknSIRHnLS~~~~F~kv~~~~~~~gkg~~W~i~~~ 80 (96)
T PF00250_consen 1 KPPYSYATLIAMAILSSPDKRLTLSEIYEWIEENFPYYRDASKGWKNSIRHNLSLNKCFVKVPRDPSEPGKGSYWTIDPE 80 (96)
T ss_dssp -SSS-HHHHHHHHHHTSTTSEBEHHHHHHHHHHHCGHHHCTHCHHHHHHHHHHHHSTTEEEESCCTSSSSSSEEEEE-CT
T ss_pred CCCCcHHHHHHHHHHhCCCCCccHHHHHHHHHHhhccccccchhhhhHHhhhccccceeeecCcCCCCCCCceeEEeCHH
Confidence 89999999999999999999999999999999999999999999999999999999999999998888999999999999
Q ss_pred ccccccCCchhhhhhc
Q psy13625 143 SYNMFDNGSYLRRRRR 158 (322)
Q Consensus 143 ~~~~f~~g~~~RrRkr 158 (322)
+...|+++.+.++|||
T Consensus 81 ~~~~~~~~~~~~~~~~ 96 (96)
T PF00250_consen 81 AIEEFEKGRFKRRRKR 96 (96)
T ss_dssp HHHHHHHSCCSSSSSS
T ss_pred HHHHHhcchhhhhhcc
Confidence 9999999988887765
No 3
>cd00059 FH Forkhead (FH), also known as a "winged helix". FH is named for the Drosophila fork head protein, a transcription factor which promotes terminal rather than segmental development. This family of transcription factor domains, which bind to B-DNA as monomers, are also found in the Hepatocyte nuclear factor (HNF) proteins, which provide tissue-specific gene regulation. The structure contains 2 flexible loops or "wings" in the C-terminal region, hence the term winged helix.
Probab=100.00 E-value=1.5e-37 Score=244.71 Aligned_cols=78 Identities=71% Similarity=1.319 Sum_probs=76.6
Q ss_pred CCCChHHHHHHHHHhcCCCCcccHHHHHHHHHhhCCccccCCCCccccccccccccccccccccCCCCCCCceeeEeC
Q psy13625 63 KPPYSYIALIAMAIQNAPDKRCTLNGIYQFIMERFPYYRENKQGWQNSIRHNLSLNECFVKIPRDDKKPGKGSYWTLD 140 (322)
Q Consensus 63 KPPySYa~LIa~AI~sSp~krLTL~EIYewI~~~fPYYr~~~~GWKNSIRHNLSLnkcFvKVpR~~~~pGKGs~Wtld 140 (322)
|||+||++||++||+++|+++|||+|||+||+++|||||.++.|||||||||||+|+||+||+|..+.+|||+||+||
T Consensus 1 kP~~sY~~LI~~Ai~~sp~~~lTL~eIy~~I~~~~pyyr~~~~gWknSIRHnLS~n~~F~kv~r~~~~~gkg~~W~i~ 78 (78)
T cd00059 1 KPPYSYSALIAMAIQSSPEKRLTLSEIYKWISDNFPYFRDAPAGWQNSIRHNLSLNKCFVKVPREPDEPGKGSYWTLD 78 (78)
T ss_pred CCCCCHHHHHHHHHHhCCCCCeeHHHHHHHHHHhCCccccCCCCCccceeEecccccceEECCCCCCCCCCCCeeeeC
Confidence 899999999999999999999999999999999999999999999999999999999999999998889999999996
No 4
>KOG3562|consensus
Probab=100.00 E-value=9.5e-38 Score=287.45 Aligned_cols=103 Identities=62% Similarity=1.208 Sum_probs=100.7
Q ss_pred CCCCCChHHHHHHHHHhcCCCCcccHHHHHHHHHhhCCccccCCCCccccccccccccccccccccCCCCCCCceeeEeC
Q psy13625 61 MVKPPYSYIALIAMAIQNAPDKRCTLNGIYQFIMERFPYYRENKQGWQNSIRHNLSLNECFVKIPRDDKKPGKGSYWTLD 140 (322)
Q Consensus 61 ~~KPPySYa~LIa~AI~sSp~krLTL~EIYewI~~~fPYYr~~~~GWKNSIRHNLSLnkcFvKVpR~~~~pGKGs~Wtld 140 (322)
.+||||||+.|.+|||++||+|.|.|+|||.||+++|||||.+.+.||||+|||||+|+||+||||+.+++|||+||+|+
T Consensus 11 dQKPPYSYIsLTaMAI~~SpekmLPLseIYkfImDrFPfYRkNTQrWQNSLRHNLSFNDCFIKiPRr~drpGKGsyWalH 90 (277)
T KOG3562|consen 11 DQKPPYSYISLTAMAIQSSPEKMLPLSEIYKFIMDRFPFYRKNTQRWQNSLRHNLSFNDCFIKIPRRPDRPGKGSYWALH 90 (277)
T ss_pred ccCCCceeeehhhHHhhcChhhcCcHHHHHHHHHhhCchhhhchHHHHHHhhccccccceeeecCCCCCCCCCccceeec
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccCCchhhhhhccchhh
Q psy13625 141 PDSYNMFDNGSYLRRRRRFKKKD 163 (322)
Q Consensus 141 Pe~~~~f~~g~~~RrRkr~k~k~ 163 (322)
|.+.+||++|+++|||||+|.++
T Consensus 91 P~a~dMFENGS~LRRrKRFrv~k 113 (277)
T KOG3562|consen 91 PSAFDMFENGSLLRRRKRFRVLK 113 (277)
T ss_pred cchhhhcccchHHHHhhhhhhcc
Confidence 99999999999999999998655
No 5
>smart00339 FH FORKHEAD. FORKHEAD, also known as a "winged helix"
Probab=100.00 E-value=1.3e-36 Score=244.03 Aligned_cols=86 Identities=74% Similarity=1.375 Sum_probs=82.0
Q ss_pred CCCChHHHHHHHHHhcCCCCcccHHHHHHHHHhhCCccccCCCCccccccccccccccccccccCCCCCCCceeeEeCCC
Q psy13625 63 KPPYSYIALIAMAIQNAPDKRCTLNGIYQFIMERFPYYRENKQGWQNSIRHNLSLNECFVKIPRDDKKPGKGSYWTLDPD 142 (322)
Q Consensus 63 KPPySYa~LIa~AI~sSp~krLTL~EIYewI~~~fPYYr~~~~GWKNSIRHNLSLnkcFvKVpR~~~~pGKGs~WtldPe 142 (322)
|||+||++||++||+++|+++|||+|||+||+++||||+.+.+|||||||||||+|+||+||+|..+.+|||+||+|+|+
T Consensus 1 kP~~sY~~lI~~ai~~sp~~~ltl~~Iy~~I~~~~pyy~~~~~~WknSIRHnLS~n~~F~kv~~~~~~~gkg~~W~i~~~ 80 (89)
T smart00339 1 KPPYSYIALIAMAILSSPDKRLTLSEIYKWIEDNFPYYRENRAGWQNSIRHNLSLNDCFVKVPREGDRPGKGSYWTLDPD 80 (89)
T ss_pred CCCCCHHHHHHHHHHhCCCCCeeHHHHHHHHHHhCchhhcCccccccccccccchhhceeecCcCCCCCCCCCEEEECcc
Confidence 89999999999999999999999999999999999999999999999999999999999999998888899999999999
Q ss_pred cccccc
Q psy13625 143 SYNMFD 148 (322)
Q Consensus 143 ~~~~f~ 148 (322)
+..+|.
T Consensus 81 ~~~~~~ 86 (89)
T smart00339 81 AENMFE 86 (89)
T ss_pred HHHHHh
Confidence 875443
No 6
>KOG2294|consensus
Probab=100.00 E-value=4.5e-36 Score=289.52 Aligned_cols=105 Identities=64% Similarity=1.152 Sum_probs=98.4
Q ss_pred CCCCCCCChHHHHHHHHHhcCCCCcccHHHHHHHHHh-hCCccccCC-CCccccccccccccccccccccCCCCCCCcee
Q psy13625 59 KDMVKPPYSYIALIAMAIQNAPDKRCTLNGIYQFIME-RFPYYRENK-QGWQNSIRHNLSLNECFVKIPRDDKKPGKGSY 136 (322)
Q Consensus 59 k~~~KPPySYa~LIa~AI~sSp~krLTL~EIYewI~~-~fPYYr~~~-~GWKNSIRHNLSLnkcFvKVpR~~~~pGKGs~ 136 (322)
...+||||||++||+|||+.+|+++|||+|||+||+. +|||||... .|||||||||||||+||+||+|..+.+|||+|
T Consensus 126 ~~~~kpp~SY~~LI~mAI~~Sp~krLtLs~Iy~~i~~~~fpyyr~~~~~gWqNSIRHNLSLn~cF~Kvpr~~~~~gKg~~ 205 (454)
T KOG2294|consen 126 GAGVKPPYSYSGLIAMAIRLSPGKRLTLGGIYFYILLEHFPYYRDANMPGWKNSIRHNLSLNKCFVKVPRERGRPGKGNY 205 (454)
T ss_pred CCCcCCccccccccccccccCCCcceeecCeeEEEEeccccccccCCCccchhhcccccccccCccccCCcccCCCCCCc
Confidence 4579999999999999999999999999999999995 999999999 99999999999999999999998889999999
Q ss_pred eEeCCCccc-cccCCchhhhhhccchhh
Q psy13625 137 WTLDPDSYN-MFDNGSYLRRRRRFKKKD 163 (322)
Q Consensus 137 WtldPe~~~-~f~~g~~~RrRkr~k~k~ 163 (322)
|+|||++.+ +|++|.++|||++++...
T Consensus 206 W~ldP~~~~~~~~~g~~~rr~~~~~~~~ 233 (454)
T KOG2294|consen 206 WTLDPDDENNMFDNGSFRRRRRSKSNGR 233 (454)
T ss_pred cccCcchhcccccccccccccccccccc
Confidence 999999998 999999999888755433
No 7
>KOG4385|consensus
Probab=99.86 E-value=7.9e-23 Score=204.19 Aligned_cols=103 Identities=39% Similarity=0.731 Sum_probs=89.1
Q ss_pred CcccCCcCCcCCCCCCccccc-----CCCCCCCCCChHHHHHHHHHhcCCCCcccHHHHHHHHHhhCCccccCCCCcccc
Q psy13625 36 YYEHYSRYSAYTSSPYSQQMV-----AGKDMVKPPYSYIALIAMAIQNAPDKRCTLNGIYQFIMERFPYYRENKQGWQNS 110 (322)
Q Consensus 36 ~~~~~s~~~~~~~~p~~~~~i-----~~k~~~KPPySYa~LIa~AI~sSp~krLTL~EIYewI~~~fPYYr~~~~GWKNS 110 (322)
.....+|.+.....|++.+-. ---.+.+|||+|+.||..||.++|++.|||+|||.|+.+.|.|||.+...|||+
T Consensus 336 s~p~rrR~sDk~~~Pisseia~N~dfyk~~dvRPPfTYAsLIRqAIlESpdkQLTLNEIY~WFTrtFAYFRRNaATWKnA 415 (581)
T KOG4385|consen 336 SGPARRRHSDKYNGPISSEIAQNMDFYKNADVRPPFTYASLIRQAILESPDKQLTLNEIYNWFTRTFAYFRRNAATWKNA 415 (581)
T ss_pred ccchhhcccccccCchhHHhhhhhhhhhccccCCchhHHHHHHHHHhcCchhhccHHHHHHHHHHHHHHHhccchhHhHH
Confidence 344556778888888877322 223468999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccccccCCCCCCCceeeEeCCCc
Q psy13625 111 IRHNLSLNECFVKIPRDDKKPGKGSYWTLDPDS 143 (322)
Q Consensus 111 IRHNLSLnkcFvKVpR~~~~pGKGs~WtldPe~ 143 (322)
|||||||+|||++|+. -||.-|++|.-.
T Consensus 416 VRHNLSLHKCF~RVEn-----vkgavwtvDe~e 443 (581)
T KOG4385|consen 416 VRHNLSLHKCFVRVEN-----VKGAVWTVDERE 443 (581)
T ss_pred HhhhhHHHHHHHHHHH-----Hhcceeeeehhh
Confidence 9999999999999955 488999998765
No 8
>COG5025 Transcription factor of the Forkhead/HNF3 family [Transcription]
Probab=99.84 E-value=8.9e-22 Score=202.36 Aligned_cols=102 Identities=39% Similarity=0.707 Sum_probs=94.4
Q ss_pred CcccccCCCCCCCCCChHHHHHHHHHhcCCCCcccHHHHHHHHHhhCCccccCCCCccccccccccccccccccccCCCC
Q psy13625 51 YSQQMVAGKDMVKPPYSYIALIAMAIQNAPDKRCTLNGIYQFIMERFPYYRENKQGWQNSIRHNLSLNECFVKIPRDDKK 130 (322)
Q Consensus 51 ~~~~~i~~k~~~KPPySYa~LIa~AI~sSp~krLTL~EIYewI~~~fPYYr~~~~GWKNSIRHNLSLnkcFvKVpR~~~~ 130 (322)
+...+...+...||+++|+.||+.||+.+++++|+|.+||.||...||||+.++.+|+||||||||||++|.||||+...
T Consensus 325 ~s~~s~~~~~~~kP~~sya~~iT~ail~s~~~kmsls~Iy~~i~s~~pyYr~~p~~w~nSiRhnlSlNksf~kvP~sa~~ 404 (610)
T COG5025 325 LSDLSADVNRTSKPAFSYANSITQAILSSPSGKMTLSEIYSWISSNLPYYRHKPTAWQNSIRHNLSLNKSFEKVPRSASQ 404 (610)
T ss_pred cCccccccccCccCCcchhhhhHHHhhcCcccccccccccccccccchhhccCCcccCchhhhhhhhccccccCCCCcCC
Confidence 44556678889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeEeCCCccccccCCch
Q psy13625 131 PGKGSYWTLDPDSYNMFDNGSY 152 (322)
Q Consensus 131 pGKGs~WtldPe~~~~f~~g~~ 152 (322)
+|||+||.|+.++...+.....
T Consensus 405 pGKg~fw~i~~s~~~~~~sk~~ 426 (610)
T COG5025 405 PGKGCFWKIDYSYIYEKESKRN 426 (610)
T ss_pred CCCcccCccChhhhhhhccccc
Confidence 9999999999999877665443
No 9
>COG5025 Transcription factor of the Forkhead/HNF3 family [Transcription]
Probab=99.46 E-value=5e-15 Score=152.94 Aligned_cols=95 Identities=41% Similarity=0.702 Sum_probs=87.8
Q ss_pred CCCCCCCCCChHHHHHHHHHhcCCCCcccHHHHHHHHHhhCCccccCCCCccccccccccccccccccccCCCCCCCcee
Q psy13625 57 AGKDMVKPPYSYIALIAMAIQNAPDKRCTLNGIYQFIMERFPYYRENKQGWQNSIRHNLSLNECFVKIPRDDKKPGKGSY 136 (322)
Q Consensus 57 ~~k~~~KPPySYa~LIa~AI~sSp~krLTL~EIYewI~~~fPYYr~~~~GWKNSIRHNLSLnkcFvKVpR~~~~pGKGs~ 136 (322)
.....-||||+|+.+|.++|..+++++|||..||.||-..|+||.....+|+|||||||++++.|.||.++.+..+||.|
T Consensus 80 ~~~t~~v~~~s~a~gr~~~il~s~~~~lt~s~~~~~~~~~~~~~~k~~~~~~~sIr~Nls~~~a~~~i~g~~g~~~~g~~ 159 (610)
T COG5025 80 SNWTYYVPPYSYATGRGLAILNSPDKPLTLSKIYTWIHNTFFYYAKVVSRWQNSIRHNLSLNDAFIKIEGRNGAKVKGHF 159 (610)
T ss_pred CCcccccCCeeeeeccccccccCcccCCcccceeeeeeecccccccccchhhhhhhcccccCceEEEEeccCCcccccee
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999899999999
Q ss_pred eEeCCCccccccCCc
Q psy13625 137 WTLDPDSYNMFDNGS 151 (322)
Q Consensus 137 WtldPe~~~~f~~g~ 151 (322)
|.|.|+....|....
T Consensus 160 ~~igP~~~~~~l~~g 174 (610)
T COG5025 160 WSIGPGHETQFLKSG 174 (610)
T ss_pred eccCCCccceeeccc
Confidence 999999876665443
No 10
>PF00538 Linker_histone: linker histone H1 and H5 family; InterPro: IPR005818 Histone proteins have central roles in both chromatin organisation (as structural units of the nucleosome) and gene regulation (as dynamic components that have a direct impact on DNA transcription and replication). Eukaryotic DNA wraps around a histone octamer to form a nucleosome, the first order of compaction of eukaryotic chromatin. The core histone octamer is composed of a central H3-H4 tetramer and two flanking H2A-H2B dimers. Each of the core histone contains a common structural motif, called the histone fold, which facilitates the interactions between the individual core histones. In addition to the core histones, there is a "linker histone" called H1 (or H5 in avian species). The linker histones present in all multicellular eukaryotes are the most divergent group of histones, with numerous cell type- and stage-specific variant. Linker histone H1 is an essential component of chromatin structure. H1 links nucleosomes into higher order structures. Histone H5 performs the same function as histone H1, and replaces H1 in certain cells. The structure of GH5, the globular domain of the linker histone H5 is known [, ]. The fold is similar to the DNA-binding domain of the catabolite gene activator protein, CAP, thus providing a possible model for the binding of GH5 to DNA. The linker histones, which do not contain the histone fold motif, are critical to the higher-order compaction of chromatin, because they bind to internucleosomal DNA and facilitate interactions between individual nucleosomes. In addition, H1 variants have been shown to be involved in the regulation of developmental genes. A common feature of this protein family is a tripartite structure in which a globular (H15) domain of about 80 amino acids is flanked by two less structured N- and C-terminal tails. The H15 domain is also characterised by high sequence homology among the family of linker histones. The highly conserved H15 domain is essential for the binding of H1 or H5 to the nucleosome. It consists of a three helix bundle (I-III), with a beta-hairpin at the C terminus. There is also a short three-residue stretch between helices I and II that is in the beta-strand conformation. Together with the C-terminal beta-hairpin, this strand forms the third strand of an antiparallel beta-sheet [, , , ]. Proteins known to contain a H15 domain are: - Eukaryotic histone H1. The histones H1 constitute a family with many variants, differing in their affinity for chromatin. Several variants are simultaneously present in a single cell. For example, the nucleated erythrocytes of birds contain both H1 and H5, the latter being an extreme variant of H1. - Eukaryotic MHYST family of histone acetyltransferase. Histone acetyltransferases transfer an acetyl group from acetyl-CoA to the epsylon- amino group of lysine within the basic NH2-termini of histones, which bind the acidic phosphates of DNA []. This entry represents the H15 domain.; GO: 0003677 DNA binding, 0006334 nucleosome assembly, 0000786 nucleosome, 0005634 nucleus; PDB: 2LSO_A 2RQP_A 1UHM_A 1UST_A 1GHC_A 1HST_A 1YQA_A 1USS_A.
Probab=94.75 E-value=0.051 Score=42.22 Aligned_cols=35 Identities=29% Similarity=0.543 Sum_probs=30.2
Q ss_pred CCCChHHHHHHHHHhcC-CCCcccHHHHHHHHHhhCCc
Q psy13625 63 KPPYSYIALIAMAIQNA-PDKRCTLNGIYQFIMERFPY 99 (322)
Q Consensus 63 KPPySYa~LIa~AI~sS-p~krLTL~EIYewI~~~fPY 99 (322)
.|| |..||..||.+. ..++.++..|..||+++|+.
T Consensus 2 hP~--y~~mI~eAI~~l~er~GsS~~aI~kyI~~~y~~ 37 (77)
T PF00538_consen 2 HPP--YSDMILEAIKALKERKGSSLQAIKKYIKAKYKV 37 (77)
T ss_dssp SSC--HHHHHHHHHHHCCSSSSEEHHHHHHHHHHHSSC
T ss_pred CCC--HHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcCc
Confidence 355 899999999974 45899999999999999975
No 11
>smart00526 H15 Domain in histone families 1 and 5.
Probab=91.81 E-value=0.36 Score=36.26 Aligned_cols=32 Identities=25% Similarity=0.421 Sum_probs=28.2
Q ss_pred hHHHHHHHHHhcCC-CCcccHHHHHHHHHhhCC
Q psy13625 67 SYIALIAMAIQNAP-DKRCTLNGIYQFIMERFP 98 (322)
Q Consensus 67 SYa~LIa~AI~sSp-~krLTL~EIYewI~~~fP 98 (322)
+|..||..||.... .++.++..|..||+++|+
T Consensus 6 ~~~~mI~eAI~~l~er~GsS~~aI~kyi~~~~~ 38 (66)
T smart00526 6 PYSEMITEAISALKERKGSSLQAIKKYIEANYK 38 (66)
T ss_pred CHHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCC
Confidence 68999999999754 577999999999999965
No 12
>cd00073 H15 linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated proteins that bind to the exterior of nucleosomes and dramatically stabilize the highly condensed states of chromatin fibers; stabilization of higher order folding occurs through electrostatic neutralization of the linker DNA segments, through a highly positively charged carboxy- terminal domain known as the AKP helix (Ala, Lys, Pro); thought to be involved in specific protein-protein and protein-DNA interactions and play a role in suppressing core histone tail domain acetylation in the chromatin fiber
Probab=90.09 E-value=0.46 Score=38.01 Aligned_cols=34 Identities=21% Similarity=0.394 Sum_probs=30.0
Q ss_pred hHHHHHHHHHhc-CCCCcccHHHHHHHHHhhCCcc
Q psy13625 67 SYIALIAMAIQN-APDKRCTLNGIYQFIMERFPYY 100 (322)
Q Consensus 67 SYa~LIa~AI~s-Sp~krLTL~EIYewI~~~fPYY 100 (322)
+|..||..||.. ...++.++..|..||+++|+.-
T Consensus 6 ~y~~MI~eAI~~l~er~GsS~~aI~kyI~~~y~~~ 40 (88)
T cd00073 6 PYSEMVTEAIKALKERKGSSLQAIKKYIEAKYKVD 40 (88)
T ss_pred CHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCCcc
Confidence 589999999996 5678899999999999998853
No 13
>PF05066 HARE-HTH: HB1, ASXL, restriction endonuclease HTH domain; InterPro: IPR007759 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. The delta protein is a dispensable subunit of Bacillus subtilis RNA polymerase (RNAP) that has major effects on the biochemical properties of the purified enzyme. In the presence of delta, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling []. The delta protein, contains two distinct regions, an N-terminal domain and a glutamate and aspartate residue-rich C-terminal region [].; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent; PDB: 2KRC_A.
Probab=80.75 E-value=1.3 Score=33.71 Aligned_cols=57 Identities=21% Similarity=0.287 Sum_probs=36.2
Q ss_pred ChHHHHHHHHHhcCCCCcccHHHHHHHHHhhCCccccCCCCcccccccccc-----cccccccc
Q psy13625 66 YSYIALIAMAIQNAPDKRCTLNGIYQFIMERFPYYRENKQGWQNSIRHNLS-----LNECFVKI 124 (322)
Q Consensus 66 ySYa~LIa~AI~sSp~krLTL~EIYewI~~~fPYYr~~~~GWKNSIRHNLS-----LnkcFvKV 124 (322)
+|+..++..+|+... +.|+.+||++-|.+.--| ........++|+=.|. ....|++|
T Consensus 1 mt~~eaa~~vL~~~~-~pm~~~eI~~~i~~~~~~-~~~~k~p~~~i~a~ly~~~~~~d~~F~~v 62 (72)
T PF05066_consen 1 MTFKEAAYEVLEEAG-RPMTFKEIWEEIQERGLY-KKSGKTPEATIAAQLYTDIKNEDSRFVKV 62 (72)
T ss_dssp S-HHHHHHHHHHHH--S-EEHHHHHHHHHHHHTS----GGGGGHHHH-HHHHHHH-T-SS-EES
T ss_pred CCHHHHHHHHHHhcC-CCcCHHHHHHHHHHhCCC-CcccCCHHHHHHHHHHHHcccCCCCEEEe
Confidence 467888888888776 889999999999976544 2225556677764433 44589988
No 14
>PF14338 Mrr_N: Mrr N-terminal domain
Probab=72.17 E-value=3.1 Score=33.07 Aligned_cols=73 Identities=23% Similarity=0.371 Sum_probs=48.8
Q ss_pred hHHHHHHHHHhc--CCCCcccHHHHHHHHHhhCCcccc-------CCC---CccccccccccccccccccccCCCCCCCc
Q psy13625 67 SYIALIAMAIQN--APDKRCTLNGIYQFIMERFPYYRE-------NKQ---GWQNSIRHNLSLNECFVKIPRDDKKPGKG 134 (322)
Q Consensus 67 SYa~LIa~AI~s--Sp~krLTL~EIYewI~~~fPYYr~-------~~~---GWKNSIRHNLSLnkcFvKVpR~~~~pGKG 134 (322)
+|-.|+...|.. .-.+.++.+||++.|.+.|..=.. ... -|+|.|+=.++--++.-=| +.+++|
T Consensus 1 ~~~~~~~piL~~L~~~g~~~~~~ei~~~v~~~~~ls~e~~~~~~~sg~~~~~~~~ri~Wa~~~L~~aGli----~~~~rG 76 (92)
T PF14338_consen 1 TYDELMPPILEALKDLGGSASRKEIYERVAERFGLSDEERNERLPSGQGYSRFKNRIRWARSYLKKAGLI----ERPKRG 76 (92)
T ss_pred CHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhCCCHHHHHHHcccCCcchhHHHhHHHHHHHHHHCCCc----cCCCCC
Confidence 355666655553 336889999999999999875311 121 5999998777765555444 334455
Q ss_pred eeeEeCCCcc
Q psy13625 135 SYWTLDPDSY 144 (322)
Q Consensus 135 s~WtldPe~~ 144 (322)
.|.|.+...
T Consensus 77 -~~~iT~~G~ 85 (92)
T PF14338_consen 77 -IWRITEKGR 85 (92)
T ss_pred -ceEECHhHH
Confidence 999988753
No 15
>KOG4012|consensus
Probab=56.32 E-value=13 Score=35.74 Aligned_cols=37 Identities=24% Similarity=0.333 Sum_probs=32.0
Q ss_pred ChHHHHHHHHHhcC-CCCcccHHHHHHHHHhhCCcccc
Q psy13625 66 YSYIALIAMAIQNA-PDKRCTLNGIYQFIMERFPYYRE 102 (322)
Q Consensus 66 ySYa~LIa~AI~sS-p~krLTL~EIYewI~~~fPYYr~ 102 (322)
-+|+.||..||..+ ...+.++.-|+.+|..+|+.|.-
T Consensus 45 P~~~~mi~eAi~a~keR~GsS~aAikK~i~~~Y~g~~v 82 (243)
T KOG4012|consen 45 PPYSEMITEAISALKERKGSSLAAIKKYIAANYPGDDV 82 (243)
T ss_pred CcHHHHHHHHHHHhhhcccchHHHHHHHHhhcCccchh
Confidence 34999999999974 56789999999999999987764
No 16
>COG2958 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.37 E-value=20 Score=35.40 Aligned_cols=59 Identities=20% Similarity=0.247 Sum_probs=41.3
Q ss_pred hHHHHHHHHHhcCCCCcccHHHHHHHHHhhCCcc------ccCCC------Ccccccccccccccccccccc
Q psy13625 67 SYIALIAMAIQNAPDKRCTLNGIYQFIMERFPYY------RENKQ------GWQNSIRHNLSLNECFVKIPR 126 (322)
Q Consensus 67 SYa~LIa~AI~sSp~krLTL~EIYewI~~~fPYY------r~~~~------GWKNSIRHNLSLnkcFvKVpR 126 (322)
++..+|-..|+. .+..+|..|||+|+.+.||-= ...++ +=--+.|=||-.+--|.||..
T Consensus 6 ~~~e~vl~~Lq~-~~ep~t~~eI~eka~e~~~~~~~~kk~~s~g~tp~q~va~~iy~~~~lq~~~pflKvte 76 (307)
T COG2958 6 NLIEIVLSVLQT-SEEPFTAREIAEKAFETFPAECQEKKFDSGGDTPQQLVAEIIYTRPNLQEKHPFLKVTE 76 (307)
T ss_pred hhHHHHHHHHHc-cCCCCcHHHHHHHHHHhccHHHHHHhhccccccHHHHHHHHHhcCccccccCccccccc
Confidence 466666666666 888899999999999999852 11111 122456778888889999843
No 17
>PF12872 OST-HTH: OST-HTH/LOTUS domain; PDB: 2KPM_A 3S93_B 3RCO_A 2KZV_A.
Probab=46.80 E-value=36 Score=25.23 Aligned_cols=57 Identities=18% Similarity=0.268 Sum_probs=35.7
Q ss_pred CCChHHHHHHHHHhcCC--CCcccHHHHHHHHHhhCCccccCCCCccccccccc-cccccc
Q psy13625 64 PPYSYIALIAMAIQNAP--DKRCTLNGIYQFIMERFPYYRENKQGWQNSIRHNL-SLNECF 121 (322)
Q Consensus 64 PPySYa~LIa~AI~sSp--~krLTL~EIYewI~~~fPYYr~~~~GWKNSIRHNL-SLnkcF 121 (322)
++-.-..+|..+|.+.+ ++.+.|+++-.++...||-|....=|-. +++.-| ++-..|
T Consensus 2 ~~~~~~~~l~~ll~~~~~~~g~v~ls~l~~~~~~~~~~f~~~~yG~~-~l~~ll~~~~~~~ 61 (74)
T PF12872_consen 2 SLEELKKLLRELLESQKGEDGWVSLSQLGQEYKKKYPDFDPRDYGFS-SLSELLESLPDVV 61 (74)
T ss_dssp --HHHHHHHHHHHHHTCTTTSSEEHHHHHHHHHHHHTT--TCCTTSS-SHHHHHHT-TTTE
T ss_pred hHHHHHHHHHHHHHhCcCCCceEEHHHHHHHHHHHCCCCCccccCCC-cHHHHHHhCCCeE
Confidence 33345678888886544 3479999999999999998887665554 334444 333433
No 18
>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2. Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst
Probab=30.34 E-value=27 Score=32.51 Aligned_cols=48 Identities=13% Similarity=0.330 Sum_probs=39.0
Q ss_pred HHHHHHHHHhcCCCCcccHHHHHHHHHhhCCcccc---CCCCcccccccccccccc
Q psy13625 68 YIALIAMAIQNAPDKRCTLNGIYQFIMERFPYYRE---NKQGWQNSIRHNLSLNEC 120 (322)
Q Consensus 68 Ya~LIa~AI~sSp~krLTL~EIYewI~~~fPYYr~---~~~GWKNSIRHNLSLnkc 120 (322)
+..||..++.-.|+.|.|+.||.+ .|||+. ...+|++.+.-+|+++.-
T Consensus 277 l~~li~~~L~~~P~~Rpt~~ell~-----h~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (331)
T cd06649 277 FQEFVNKCLIKNPAERADLKMLMN-----HTFIKRSEVEEVDFAGWLCKTLRLNQP 327 (331)
T ss_pred HHHHHHHHccCCcccCCCHHHHhc-----ChHHhhcccccccHHHHHHHhhccccc
Confidence 678999999999999999999973 467764 356789998888887754
No 19
>PF14960 ATP_synth_reg: ATP synthase regulation
Probab=26.83 E-value=20 Score=26.84 Aligned_cols=17 Identities=41% Similarity=0.483 Sum_probs=14.9
Q ss_pred cceeccccCCCcccccc
Q psy13625 286 DIFESATIPGNANCQIG 302 (322)
Q Consensus 286 ~~~~~~~~~~~~~~~~~ 302 (322)
.+|.|-||.|-+||-+.
T Consensus 15 k~FNs~T~~GR~N~~~A 31 (49)
T PF14960_consen 15 KYFNSYTIRGRANVAKA 31 (49)
T ss_pred HHhccccccchhhhHHH
Confidence 57999999999999754
No 20
>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src. Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo
Probab=26.69 E-value=71 Score=28.21 Aligned_cols=34 Identities=24% Similarity=0.421 Sum_probs=29.8
Q ss_pred CChHHHHHHHHHhcCCCCcccHHHHHHHHHhhCC
Q psy13625 65 PYSYIALIAMAIQNAPDKRCTLNGIYQFIMERFP 98 (322)
Q Consensus 65 PySYa~LIa~AI~sSp~krLTL~EIYewI~~~fP 98 (322)
+-....||..++.-.|++|.|..||.+++.+-|+
T Consensus 229 ~~~l~~li~~~l~~~p~~Rp~~~~~~~~l~~~~~ 262 (262)
T cd05071 229 PESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFT 262 (262)
T ss_pred CHHHHHHHHHHccCCcccCCCHHHHHHHHHHhcC
Confidence 4567889999999999999999999999988663
No 21
>PF12317 IFT46_B_C: Intraflagellar transport complex B protein 46 C terminal; InterPro: IPR022088 This entry represents proteins is found in eukaryotes. Proteins are typically between 298 and 416 amino acids in length. It is thought to be a flagellar protein of complex B and like all IFT proteins, it is required for transport of IFT particles into the flagella [].
Probab=25.76 E-value=46 Score=31.65 Aligned_cols=31 Identities=39% Similarity=0.521 Sum_probs=25.9
Q ss_pred cccccccccCCCCCCCceeeEeCCCcccccc
Q psy13625 118 NECFVKIPRDDKKPGKGSYWTLDPDSYNMFD 148 (322)
Q Consensus 118 nkcFvKVpR~~~~pGKGs~WtldPe~~~~f~ 148 (322)
=+.|.||||.++.+-.-.++.||+-+.++=+
T Consensus 52 iDaFiKVpRPD~~~d~LGL~vLDEP~~~QSd 82 (214)
T PF12317_consen 52 IDAFIKVPRPDGKPDNLGLTVLDEPSANQSD 82 (214)
T ss_pred cccceeccCCCCCccccCCEEecCCCcccCC
Confidence 4789999999988877789999999876544
No 22
>PF10264 Stork_head: Winged helix Storkhead-box1 domain; InterPro: IPR019391 In humans the Storkhead-box protein controls polyploidization of extravillus trophoblast and is implicated in pre-eclampsia []. This entry represents the conserved N-terminal winged-helix domain, which is likely to bind DNA.
Probab=25.43 E-value=1.1e+02 Score=25.06 Aligned_cols=34 Identities=15% Similarity=0.267 Sum_probs=29.5
Q ss_pred HHHHHHHHHh--cCCCCcccHHHHHHHHHhhCCccc
Q psy13625 68 YIALIAMAIQ--NAPDKRCTLNGIYQFIMERFPYYR 101 (322)
Q Consensus 68 Ya~LIa~AI~--sSp~krLTL~EIYewI~~~fPYYr 101 (322)
-+..|..||. ++.+...|+..|.+++.++||--.
T Consensus 12 L~EvlC~~I~dln~~~~~at~E~l~~~L~~~yp~i~ 47 (80)
T PF10264_consen 12 LPEVLCWVISDLNAAGQPATQETLREHLRKHYPGIA 47 (80)
T ss_pred HHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCC
Confidence 4577888888 688999999999999999999754
No 23
>KOG1528|consensus
Probab=22.32 E-value=37 Score=34.22 Aligned_cols=32 Identities=34% Similarity=0.574 Sum_probs=24.5
Q ss_pred ccccccccccccccCCCCCC-CceeeEeCCCcc
Q psy13625 113 HNLSLNECFVKIPRDDKKPG-KGSYWTLDPDSY 144 (322)
Q Consensus 113 HNLSLnkcFvKVpR~~~~pG-KGs~WtldPe~~ 144 (322)
--||+.+...-+.|-..+.| ||.+|.|||=..
T Consensus 109 ~~ls~~dvl~aID~G~s~GG~kGrhWvLDPIDG 141 (351)
T KOG1528|consen 109 SPLSSDDVLKAIDRGNSEGGPKGRHWVLDPIDG 141 (351)
T ss_pred CCCCHHHHHHHHhcccccCCCCCceEEeccCCC
Confidence 45778888888877765544 899999999764
No 24
>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.
Probab=22.12 E-value=94 Score=27.12 Aligned_cols=30 Identities=23% Similarity=0.396 Sum_probs=25.8
Q ss_pred hHHHHHHHHHhcCCCCcccHHHHHHHHHhh
Q psy13625 67 SYIALIAMAIQNAPDKRCTLNGIYQFIMER 96 (322)
Q Consensus 67 SYa~LIa~AI~sSp~krLTL~EIYewI~~~ 96 (322)
....||..++...|++|.|+.+||+-+++-
T Consensus 236 ~~~~li~~~l~~~p~~Rpt~~~i~~~~~~~ 265 (267)
T cd08229 236 ELRQLVNMCINPDPEKRPDITYVYDVAKRM 265 (267)
T ss_pred HHHHHHHHhcCCCcccCCCHHHHHHHHhhh
Confidence 466788888888999999999999988764
No 25
>PRK09462 fur ferric uptake regulator; Provisional
Probab=20.58 E-value=1.4e+02 Score=25.55 Aligned_cols=30 Identities=10% Similarity=0.170 Sum_probs=23.9
Q ss_pred HHHHHHHhcCCCCcccHHHHHHHHHhhCCc
Q psy13625 70 ALIAMAIQNAPDKRCTLNGIYQFIMERFPY 99 (322)
Q Consensus 70 ~LIa~AI~sSp~krLTL~EIYewI~~~fPY 99 (322)
..|..+|.+..++-+|..|||+.+.+..|-
T Consensus 20 ~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~ 49 (148)
T PRK09462 20 LKILEVLQEPDNHHVSAEDLYKRLIDMGEE 49 (148)
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHhhCCC
Confidence 355666776667789999999999988874
Done!