Query psy13625
Match_columns 322
No_of_seqs 196 out of 831
Neff 3.8
Searched_HMMs 29240
Date Fri Aug 16 16:04:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13625.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13625hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vtn_C HNF-3/FORK head DNA-rec 100.0 9.5E-45 3.2E-49 297.4 4.4 100 62-161 2-101 (102)
2 2hdc_A Protein (transcription 100.0 1.2E-44 4.2E-49 294.4 1.8 97 62-158 1-97 (97)
3 1kq8_A HFH-1, hepatocyte nucle 100.0 5.4E-44 1.8E-48 292.0 4.5 98 62-159 1-99 (100)
4 2hfh_A Genesis, HFH-2; HNF-3 h 100.0 4.5E-44 1.5E-48 296.7 3.9 101 61-161 1-101 (109)
5 2c6y_A Forkhead box protein K2 100.0 3.1E-43 1.1E-47 292.4 1.1 101 58-158 11-111 (111)
6 3l2c_A Forkhead box protein O4 100.0 1.7E-37 5.9E-42 257.3 4.6 86 58-145 19-109 (110)
7 3coa_C Forkhead box protein O1 100.0 1.5E-37 5.2E-42 260.3 4.2 83 60-144 8-95 (117)
8 3bpy_A FORK head domain, forkh 100.0 2.3E-37 8E-42 246.1 4.4 78 61-140 3-85 (85)
9 2a07_F Forkhead box protein P2 100.0 7.6E-38 2.6E-42 253.0 0.0 78 61-143 1-78 (93)
10 1e17_A AFX; DNA binding domain 100.0 7.7E-37 2.6E-41 265.5 3.2 85 58-144 35-124 (150)
11 3g73_A Forkhead box protein M1 100.0 6.6E-36 2.3E-40 257.6 5.0 99 56-157 11-111 (142)
12 1uhm_A Histone H1, histone HHO 84.9 0.85 2.9E-05 34.8 3.9 33 67-99 6-39 (78)
13 1uss_A Histone H1; DNA binding 84.7 1 3.5E-05 35.2 4.3 33 67-99 9-42 (88)
14 1hst_A Histone H5; chromosomal 82.3 1.4 4.7E-05 34.8 4.2 32 67-98 9-41 (90)
15 1ust_A Histone H1; DNA binding 79.9 1.4 4.9E-05 34.9 3.5 33 67-99 9-42 (93)
16 2rqp_A Heterochromatin protein 77.4 1.7 5.9E-05 33.7 3.3 34 67-100 11-45 (88)
17 2lso_A Histone H1X; structural 63.9 1.9 6.6E-05 33.4 0.0 33 66-98 6-39 (83)
18 1ghc_A GH1; chromosomal protei 32.4 5.4 0.00019 29.7 -1.3 30 67-96 5-35 (75)
19 2kpm_A Uncharacterized protein 28.5 1.3E+02 0.0043 24.4 6.1 40 69-108 23-64 (105)
20 4fla_A Regulation of nuclear P 27.6 13 0.00045 31.9 0.1 19 267-285 3-23 (152)
21 4aw0_A HPDK1, 3-phosphoinositi 25.7 18 0.0006 33.6 0.6 39 68-109 261-301 (311)
22 2vup_A Glutathione peroxidase- 25.4 53 0.0018 26.8 3.4 50 265-314 4-57 (190)
23 3hyh_A Carbon catabolite-derep 21.8 38 0.0013 30.6 2.0 34 67-100 238-273 (275)
24 3kh7_A Thiol:disulfide interch 21.1 78 0.0027 25.5 3.6 33 282-314 33-67 (176)
25 2kzv_A Uncharacterized protein 20.5 2.1E+02 0.0073 22.3 5.9 43 66-108 7-51 (92)
No 1
>1vtn_C HNF-3/FORK head DNA-recognition motif; protein-DNA complex, double helix, transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens} PDB: 1d5v_A
Probab=100.00 E-value=9.5e-45 Score=297.35 Aligned_cols=100 Identities=69% Similarity=1.229 Sum_probs=97.4
Q ss_pred CCCCChHHHHHHHHHhcCCCCcccHHHHHHHHHhhCCccccCCCCccccccccccccccccccccCCCCCCCceeeEeCC
Q psy13625 62 VKPPYSYIALIAMAIQNAPDKRCTLNGIYQFIMERFPYYRENKQGWQNSIRHNLSLNECFVKIPRDDKKPGKGSYWTLDP 141 (322)
Q Consensus 62 ~KPPySYa~LIa~AI~sSp~krLTL~EIYewI~~~fPYYr~~~~GWKNSIRHNLSLnkcFvKVpR~~~~pGKGs~WtldP 141 (322)
+||||||++||+|||+++|+++|||+|||+||+++||||+.+..|||||||||||||+||+||+|..+++|||+||+|+|
T Consensus 2 ~KPp~SY~~LI~~AI~~sp~~~LtL~eIY~~I~~~fpyyr~~~~gWqNSIRHNLSln~~F~kv~r~~~~~GKG~~W~l~p 81 (102)
T 1vtn_C 2 AKPPYSYISLITMAIQQAPGKMLTLSEIYQWIMDLFPYYRENQQRWQNSIRHSLSFNDCFVKVARSPDKPGKGSYWALHP 81 (102)
T ss_dssp CCCSSCHHHHHHHHHHTSTTSCBCHHHHHHHHHHHCGGGGSCHHHHHHHHHHHHHHCTTEEEECCCSCSSCSSCEEEECG
T ss_pred cCcCCCHHHHHHHHHHhCCCCCCcHHHHHHHHHHcCCccccCCCchhhhhhhhhhhccceEecCCCCCCCCCcceEEECc
Confidence 69999999999999999999999999999999999999999999999999999999999999999988999999999999
Q ss_pred CccccccCCchhhhhhccch
Q psy13625 142 DSYNMFDNGSYLRRRRRFKK 161 (322)
Q Consensus 142 e~~~~f~~g~~~RrRkr~k~ 161 (322)
++.++|++|.++|||+|+++
T Consensus 82 ~~~~~f~~g~~~rr~~~~~~ 101 (102)
T 1vtn_C 82 SSGNMFENGCYLRRQKRFKL 101 (102)
T ss_dssp GGCSTTCSSCSSSCSSCCCC
T ss_pred CHHHHhhcCCeecccccccc
Confidence 99999999999999998864
No 2
>2hdc_A Protein (transcription factor); structure, dyanamics, genesis, winged helix protein, protein/DNA complex; HET: DNA; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=100.00 E-value=1.2e-44 Score=294.40 Aligned_cols=97 Identities=72% Similarity=1.296 Sum_probs=94.2
Q ss_pred CCCCChHHHHHHHHHhcCCCCcccHHHHHHHHHhhCCccccCCCCccccccccccccccccccccCCCCCCCceeeEeCC
Q psy13625 62 VKPPYSYIALIAMAIQNAPDKRCTLNGIYQFIMERFPYYRENKQGWQNSIRHNLSLNECFVKIPRDDKKPGKGSYWTLDP 141 (322)
Q Consensus 62 ~KPPySYa~LIa~AI~sSp~krLTL~EIYewI~~~fPYYr~~~~GWKNSIRHNLSLnkcFvKVpR~~~~pGKGs~WtldP 141 (322)
+||||||++||+|||+++|+++|||+|||+||+++||||+.+..|||||||||||||+||+||+|+.+++|||+||+|+|
T Consensus 1 ~KPp~SY~~LI~~AI~~sp~~~ltL~eIY~~i~~~fpyyr~~~~gWqNSIRHNLSln~~F~Kv~r~~~~~gKg~~W~l~p 80 (97)
T 2hdc_A 1 VKPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDP 80 (97)
T ss_dssp CCCCCCHHHHHHHHHHTCTTTCBCHHHHHHHHHHHCHHHHHHCSSHHHHHHHHHHHHHCCEEECSCTTCSSSCCEEECCT
T ss_pred CcCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHhchhhccCCcceehhhhhhhhhhhheeecCCCCCCCCCcceEEECc
Confidence 59999999999999999999999999999999999999999999999999999999999999999988999999999999
Q ss_pred CccccccCCchhhhhhc
Q psy13625 142 DSYNMFDNGSYLRRRRR 158 (322)
Q Consensus 142 e~~~~f~~g~~~RrRkr 158 (322)
++.++|++|.|+|||+|
T Consensus 81 ~~~~~f~~g~~~rrr~r 97 (97)
T 2hdc_A 81 QSEDMFDNGSFLRRRKR 97 (97)
T ss_dssp THHHHHHHSCCCSSSCC
T ss_pred CHHHHHhCCCccCCCCC
Confidence 99999999999888775
No 3
>1kq8_A HFH-1, hepatocyte nuclear factor 3 forkhead homolog 1, winged; winged helix protein, structure, transcription; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=100.00 E-value=5.4e-44 Score=292.00 Aligned_cols=98 Identities=53% Similarity=1.048 Sum_probs=72.9
Q ss_pred CCCCChHHHHHHHHHhcCCCCcccHHHHHHHHHhhCCccccCCCCccccccccccccccccccccCCCCC-CCceeeEeC
Q psy13625 62 VKPPYSYIALIAMAIQNAPDKRCTLNGIYQFIMERFPYYRENKQGWQNSIRHNLSLNECFVKIPRDDKKP-GKGSYWTLD 140 (322)
Q Consensus 62 ~KPPySYa~LIa~AI~sSp~krLTL~EIYewI~~~fPYYr~~~~GWKNSIRHNLSLnkcFvKVpR~~~~p-GKGs~Wtld 140 (322)
+||||||++||+|||+++|+++|||+|||+||+++||||+.+..|||||||||||||+||+||+|+.+++ |||+||+|+
T Consensus 1 ~KPp~SY~~LI~~AI~~sp~~~ltL~eIY~~i~~~fpyyr~~~~gWqNSIRHNLSln~~F~kv~r~~~~p~gkg~~W~l~ 80 (100)
T 1kq8_A 1 PKPPYSYIALITMAIRDSAGGRLTLAEINEYLMGKFPFFRGSYTGWRNSVRHNLSLNDCFVKVLRDPSRPWGKDNYWMLN 80 (100)
T ss_dssp ------CHHHHHHHHTTSSSSCBCHHHHHHHHHHHCTTGGGTCSCCHHHHHHHHHHHTCCEECSSCSCCSSSCCCCEECC
T ss_pred CcCCCCHHHHHHHHHHhCCCCCCcHHHHHHHHHHhCccccCCCCceecccchheehhheeeecCCCCCCCCCCCeEEEEC
Confidence 5999999999999999999999999999999999999999999999999999999999999999988887 999999999
Q ss_pred CCccccccCCchhhhhhcc
Q psy13625 141 PDSYNMFDNGSYLRRRRRF 159 (322)
Q Consensus 141 Pe~~~~f~~g~~~RrRkr~ 159 (322)
|+++.+|++|.++|||+|+
T Consensus 81 p~~~~~f~~g~~~rrr~r~ 99 (100)
T 1kq8_A 81 PNSEYTFADGVFRRRRYRL 99 (100)
T ss_dssp C------------------
T ss_pred cCHHHHHhCCCcccCCCCC
Confidence 9999999999998888874
No 4
>2hfh_A Genesis, HFH-2; HNF-3 homologues, winged helix protein; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=100.00 E-value=4.5e-44 Score=296.67 Aligned_cols=101 Identities=72% Similarity=1.302 Sum_probs=91.2
Q ss_pred CCCCCChHHHHHHHHHhcCCCCcccHHHHHHHHHhhCCccccCCCCccccccccccccccccccccCCCCCCCceeeEeC
Q psy13625 61 MVKPPYSYIALIAMAIQNAPDKRCTLNGIYQFIMERFPYYRENKQGWQNSIRHNLSLNECFVKIPRDDKKPGKGSYWTLD 140 (322)
Q Consensus 61 ~~KPPySYa~LIa~AI~sSp~krLTL~EIYewI~~~fPYYr~~~~GWKNSIRHNLSLnkcFvKVpR~~~~pGKGs~Wtld 140 (322)
++||||||++||+|||+++|+++|||+|||+||+++||||+.++.|||||||||||||+||+||+|+.+++|||+||+|+
T Consensus 1 ~~KPp~SYa~LI~~AI~~sp~~~LtL~eIY~~I~~~fPyyr~~~~gWqNSIRHNLSln~~F~Kv~r~~~~~GKG~~W~l~ 80 (109)
T 2hfh_A 1 MVKPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLD 80 (109)
T ss_dssp CCCCCCCHHHHHHHHHHTCSSSCBCHHHHHHHHHTTCHHHHTTCGGGHHHHHHHHHHHTCCBCCTTCTTSCSSCCCBBCC
T ss_pred CCCCCCCHHHHHHHHHHhCCCCCCcHHHHHHHHHHhcchhccCCcccchhhhhhhhhhhhhhcCCCCCCCCCCceeEEEC
Confidence 47999999999999999999999999999999999999999999999999999999999999999998899999999999
Q ss_pred CCccccccCCchhhhhhccch
Q psy13625 141 PDSYNMFDNGSYLRRRRRFKK 161 (322)
Q Consensus 141 Pe~~~~f~~g~~~RrRkr~k~ 161 (322)
|++.++|++|.++|||++.+.
T Consensus 81 p~~~~~f~~g~~~Rrr~~~~~ 101 (109)
T 2hfh_A 81 PQSEDMFDNGSFLRRRKRFKR 101 (109)
T ss_dssp TTCCHHHHSSSCC--------
T ss_pred ccHHHHHhCCCcccCcccccc
Confidence 999999999999999887654
No 5
>2c6y_A Forkhead box protein K2; transcription regulation, DNA-binding domain, forkhead transcription factors, interleukin enhancer binding factor; 2.4A {Homo sapiens} SCOP: a.4.5.14 PDB: 1jxs_A 2a3s_A 2d2w_A
Probab=100.00 E-value=3.1e-43 Score=292.35 Aligned_cols=101 Identities=53% Similarity=0.984 Sum_probs=94.6
Q ss_pred CCCCCCCCChHHHHHHHHHhcCCCCcccHHHHHHHHHhhCCccccCCCCccccccccccccccccccccCCCCCCCceee
Q psy13625 58 GKDMVKPPYSYIALIAMAIQNAPDKRCTLNGIYQFIMERFPYYRENKQGWQNSIRHNLSLNECFVKIPRDDKKPGKGSYW 137 (322)
Q Consensus 58 ~k~~~KPPySYa~LIa~AI~sSp~krLTL~EIYewI~~~fPYYr~~~~GWKNSIRHNLSLnkcFvKVpR~~~~pGKGs~W 137 (322)
.....||||||++||++||+++|+++|||+|||+||+++||||+.+..|||||||||||||+||+||+|..+++|||+||
T Consensus 11 ~~~~~KPp~SYa~LI~~AI~~sp~~~LtL~eIY~~I~~~fPyyr~~~~gWqNSIRHNLSln~~F~Kv~r~~~~~GKG~~W 90 (111)
T 2c6y_A 11 RGSDSKPPYSYAQLIVQAITMAPDKQLTLNGIYTHITKNYPYYRTADKGWQNSIRHNLSLNRYFIKVPRSQEEPGKGSFW 90 (111)
T ss_dssp ---CCCCSSCHHHHHHHHHHTSTTSCEEHHHHHHHHHHHCTTSCTTCHHHHHHHHHHHHHSTTEEEECCCTTSCCSSCEE
T ss_pred CCCCCCCCCCHHHHHHHHHHhCCCCCCcHHHHHHHHHHcCCccccCCCeeecchhHHhhhhhhhccccCCCCCCCCcceE
Confidence 44578999999999999999999999999999999999999999999999999999999999999999998899999999
Q ss_pred EeCCCccccccCCchhhhhhc
Q psy13625 138 TLDPDSYNMFDNGSYLRRRRR 158 (322)
Q Consensus 138 tldPe~~~~f~~g~~~RrRkr 158 (322)
+|+|++..+|.+|.|+|||+|
T Consensus 91 ~l~p~~~~~~~~~~~r~rr~r 111 (111)
T 2c6y_A 91 RIDPASESKLIEQAFRKRRPR 111 (111)
T ss_dssp EECHHHHHHHHHHHTCCCCCC
T ss_pred EeChhHHHhhhcccccccCCC
Confidence 999999999999999877764
No 6
>3l2c_A Forkhead box protein O4; winged helix, transcription-DNA COMP; 1.87A {Homo sapiens} SCOP: a.4.5.14 PDB: 3co6_C*
Probab=100.00 E-value=1.7e-37 Score=257.33 Aligned_cols=86 Identities=41% Similarity=0.804 Sum_probs=75.6
Q ss_pred CCCCCCCCChHHHHHHHHHhcCCCCcccHHHHHHHHHhhCCccccC-----CCCccccccccccccccccccccCCCCCC
Q psy13625 58 GKDMVKPPYSYIALIAMAIQNAPDKRCTLNGIYQFIMERFPYYREN-----KQGWQNSIRHNLSLNECFVKIPRDDKKPG 132 (322)
Q Consensus 58 ~k~~~KPPySYa~LIa~AI~sSp~krLTL~EIYewI~~~fPYYr~~-----~~GWKNSIRHNLSLnkcFvKVpR~~~~pG 132 (322)
.....||||||++||+|||+++|+++|||+|||+||+++||||+.+ ..|||||||||||||+||+||+| +++|
T Consensus 19 ~~~~~kPpySY~~LI~~AI~~sp~~~LtL~eIY~~I~~~fPyyr~~~~~~s~~gWqNSIRHNLSln~~F~Kv~r--~~~G 96 (110)
T 3l2c_A 19 SRRNAWGNQSYAELISQAIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIKVHN--EATG 96 (110)
T ss_dssp -CCBTTBSCCHHHHHHHHHHHSTTSCBCHHHHHHHHHHHCGGGTTCTTCCTTSHHHHHHHHHHHHCTTEEEECC--CSTT
T ss_pred cCCCCCCCCCHHHHHHHHHHhCCccCcCHHHHHHHHHHhCchhhcCccccCCCCcccchhhhccHhhhheeCCC--CCCC
Confidence 3456899999999999999999999999999999999999999986 46999999999999999999998 4789
Q ss_pred CceeeEeCCCccc
Q psy13625 133 KGSYWTLDPDSYN 145 (322)
Q Consensus 133 KGs~WtldPe~~~ 145 (322)
||+||+|||++.+
T Consensus 97 KG~~W~l~p~~~~ 109 (110)
T 3l2c_A 97 KSSWWMLNPEGGK 109 (110)
T ss_dssp CCCEEEEC-----
T ss_pred CCceEEECccccC
Confidence 9999999999853
No 7
>3coa_C Forkhead box protein O1; winged helix, forkhead domain, chromosomal rearrangement; HET: DNA; 2.20A {Homo sapiens} PDB: 3co7_C* 2k86_A 2uzk_A
Probab=100.00 E-value=1.5e-37 Score=260.33 Aligned_cols=83 Identities=39% Similarity=0.787 Sum_probs=76.3
Q ss_pred CCCCCCChHHHHHHHHHhcCCCCcccHHHHHHHHHhhCCccccCC-----CCccccccccccccccccccccCCCCCCCc
Q psy13625 60 DMVKPPYSYIALIAMAIQNAPDKRCTLNGIYQFIMERFPYYRENK-----QGWQNSIRHNLSLNECFVKIPRDDKKPGKG 134 (322)
Q Consensus 60 ~~~KPPySYa~LIa~AI~sSp~krLTL~EIYewI~~~fPYYr~~~-----~GWKNSIRHNLSLnkcFvKVpR~~~~pGKG 134 (322)
...||||||++||+|||+++|+++|||+|||+||+++||||+.+. .|||||||||||||+||+||++ +++|||
T Consensus 8 ~n~kPp~SYa~LI~~AI~~sp~~~LTL~eIY~~I~~~fPyyr~~~d~~s~~gWqNSIRHNLSln~~F~Kv~~--~~~GKg 85 (117)
T 3coa_C 8 RNAWGNLSYADLITKAIESSAEKRLTLSQIYEWMVKSVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIRVQN--EGTGKS 85 (117)
T ss_dssp CBTTBSCCHHHHHHHHHHTSTTSCBCHHHHHHHHHHHCGGGTTCCSHHHHHHHHHHHHHHHHHCTTEEEECC--SSTTCC
T ss_pred CCCCCCCCHHHHHHHHHHhCCCCCccHHHHHHHHHHhCcccccCCCCcccccchhccchheecchhhccccc--CCCCCc
Confidence 467999999999999999999999999999999999999999976 6999999999999999999997 468999
Q ss_pred eeeEeCCCcc
Q psy13625 135 SYWTLDPDSY 144 (322)
Q Consensus 135 s~WtldPe~~ 144 (322)
+||+|+|++.
T Consensus 86 ~~W~l~p~~~ 95 (117)
T 3coa_C 86 SWWMLNPEGG 95 (117)
T ss_dssp CEEEECC---
T ss_pred ceEEECcccc
Confidence 9999999975
No 8
>3bpy_A FORK head domain, forkhead transcription factor FOXO4, DNA binding domain; forkhead BOX, winged helix; 1.87A {Homo sapiens}
Probab=100.00 E-value=2.3e-37 Score=246.08 Aligned_cols=78 Identities=44% Similarity=0.838 Sum_probs=73.9
Q ss_pred CCCCCChHHHHHHHHHhcCCCCcccHHHHHHHHHhhCCccccCC-----CCccccccccccccccccccccCCCCCCCce
Q psy13625 61 MVKPPYSYIALIAMAIQNAPDKRCTLNGIYQFIMERFPYYRENK-----QGWQNSIRHNLSLNECFVKIPRDDKKPGKGS 135 (322)
Q Consensus 61 ~~KPPySYa~LIa~AI~sSp~krLTL~EIYewI~~~fPYYr~~~-----~GWKNSIRHNLSLnkcFvKVpR~~~~pGKGs 135 (322)
.+||||||++||+|||+++|+++|||+|||+||+++||||+.+. .|||||||||||||+||+||+| +++|||+
T Consensus 3 n~kp~~SY~~LI~~Ai~~sp~~~ltL~eIY~~i~~~fpyy~~~~~~~s~~gWqNSIRHNLSln~~F~Kv~r--~~~GKg~ 80 (85)
T 3bpy_A 3 NAWGNQSYAELISQAIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIKVHN--EATGKSS 80 (85)
T ss_dssp BTTBSCCHHHHHHHHHHHSTTSCBCHHHHHHHHHHHCGGGTTCTTCCTTSHHHHHHHHHHHHCTTEEEECC--CSTTCCC
T ss_pred CCcCCCCHHHHHHHHHHhCCcCCccHHHHHHHHHHhCcchhcCccCccCCCcchhhhhhccHhhhheeCCC--CCCCCCC
Confidence 57999999999999999999999999999999999999999864 6999999999999999999998 4789999
Q ss_pred eeEeC
Q psy13625 136 YWTLD 140 (322)
Q Consensus 136 ~Wtld 140 (322)
||+||
T Consensus 81 ~W~ld 85 (85)
T 3bpy_A 81 WWMLN 85 (85)
T ss_dssp EEEEC
T ss_pred ceecC
Confidence 99997
No 9
>2a07_F Forkhead box protein P2; double-helix, swapping, homodimer, monomer, winged-helix, magnesium, transcription/DNA complex; 1.90A {Homo sapiens} SCOP: a.4.5.14 PDB: 2as5_F 2kiu_A 3qrf_F
Probab=100.00 E-value=7.6e-38 Score=252.97 Aligned_cols=78 Identities=44% Similarity=0.929 Sum_probs=74.2
Q ss_pred CCCCCChHHHHHHHHHhcCCCCcccHHHHHHHHHhhCCccccCCCCccccccccccccccccccccCCCCCCCceeeEeC
Q psy13625 61 MVKPPYSYIALIAMAIQNAPDKRCTLNGIYQFIMERFPYYRENKQGWQNSIRHNLSLNECFVKIPRDDKKPGKGSYWTLD 140 (322)
Q Consensus 61 ~~KPPySYa~LIa~AI~sSp~krLTL~EIYewI~~~fPYYr~~~~GWKNSIRHNLSLnkcFvKVpR~~~~pGKGs~Wtld 140 (322)
.+||||||++||+|||+++|+++|||+|||+||+++||||+.+.+|||||||||||||+||+||++ |||+||+||
T Consensus 1 ~~KPp~SY~~LI~~AI~~sp~~~ltL~eIY~~i~~~fpyyr~~~~gWkNSIRHNLSln~~F~kv~~-----gkG~~W~l~ 75 (93)
T 2a07_F 1 IVRPPFTYATLIRQAIMESSDRQLTLNEIYSWFTRTFAYFRRNAATWKNAVRHNLSLHKCFVRVEN-----VKGAVWTVD 75 (93)
T ss_dssp -CCCSCCHHHHHHHHHHHSTTSCBCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCTTBCCEEC-----SSSEECCBC
T ss_pred CCCCCCCHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCccccCCCccccccceeeehhhceeecCC-----CCCCeeEEC
Confidence 369999999999999999999999999999999999999999999999999999999999999963 799999999
Q ss_pred CCc
Q psy13625 141 PDS 143 (322)
Q Consensus 141 Pe~ 143 (322)
|+.
T Consensus 76 ~~~ 78 (93)
T 2a07_F 76 EVE 78 (93)
T ss_dssp HHH
T ss_pred hHH
Confidence 974
No 10
>1e17_A AFX; DNA binding domain, winged helix; NMR {Homo sapiens} SCOP: a.4.5.14
Probab=100.00 E-value=7.7e-37 Score=265.52 Aligned_cols=85 Identities=41% Similarity=0.811 Sum_probs=79.3
Q ss_pred CCCCCCCCChHHHHHHHHHhcCCCCcccHHHHHHHHHhhCCccccC-----CCCccccccccccccccccccccCCCCCC
Q psy13625 58 GKDMVKPPYSYIALIAMAIQNAPDKRCTLNGIYQFIMERFPYYREN-----KQGWQNSIRHNLSLNECFVKIPRDDKKPG 132 (322)
Q Consensus 58 ~k~~~KPPySYa~LIa~AI~sSp~krLTL~EIYewI~~~fPYYr~~-----~~GWKNSIRHNLSLnkcFvKVpR~~~~pG 132 (322)
.....||||||++||+|||+++|+++|||+|||+||+++||||+.+ ..|||||||||||||+||+||+| +++|
T Consensus 35 ~~rn~kPp~SYa~LI~~AI~sSp~k~LTL~eIY~wI~~~fPYfr~~~d~~s~~gWqNSIRHNLSLnk~F~Kv~r--~~~G 112 (150)
T 1e17_A 35 SRRNAWGNQSYAELISQAIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIKVHN--EATG 112 (150)
T ss_dssp CCCCTTCSCCHHHHHHHHHHHSSSCCEEHHHHHHHHHHHCGGGHHHHTSTTHHHHHHHHHHHHHSSTTEEEECC--TTTS
T ss_pred CCCCCCCCCCHHHHHHHHHHhCCCCCccHHHHHHHHHHhCchhccCCCCccccchhhccceeeeeeeeeEecCC--CCCC
Confidence 3456799999999999999999999999999999999999999986 37999999999999999999998 5789
Q ss_pred CceeeEeCCCcc
Q psy13625 133 KGSYWTLDPDSY 144 (322)
Q Consensus 133 KGs~WtldPe~~ 144 (322)
||+||+|||++.
T Consensus 113 KG~~W~ldp~~~ 124 (150)
T 1e17_A 113 KSSWWMLNPEGG 124 (150)
T ss_dssp SSCEEEECTTCC
T ss_pred CcceEEECcccc
Confidence 999999999975
No 11
>3g73_A Forkhead box protein M1; DNA-binding domain, forkhead transcription factors, FOXM1, W helix; HET: DNA; 2.21A {Homo sapiens}
Probab=100.00 E-value=6.6e-36 Score=257.58 Aligned_cols=99 Identities=39% Similarity=0.755 Sum_probs=81.9
Q ss_pred cCCCCCCCCCChHHHHHHHHHhcCCCCcccHHHHHHHHHhhCCcccc-CCCCccccccccccccccccccccCCCCCCCc
Q psy13625 56 VAGKDMVKPPYSYIALIAMAIQNAPDKRCTLNGIYQFIMERFPYYRE-NKQGWQNSIRHNLSLNECFVKIPRDDKKPGKG 134 (322)
Q Consensus 56 i~~k~~~KPPySYa~LIa~AI~sSp~krLTL~EIYewI~~~fPYYr~-~~~GWKNSIRHNLSLnkcFvKVpR~~~~pGKG 134 (322)
...+...||||||++||+|||+++|+++|||+|||+||+++||||+. +..|||||||||||||+||+|+. +++|||
T Consensus 11 ~~~~~~~KPpySYa~LI~~AI~~sp~~~LTL~eIY~~I~~~fPyyr~~~~~gWqNSIRHNLSln~~F~r~~---~~~GKg 87 (142)
T 3g73_A 11 WQNSVSERPPYSYMAMIQFAINSTERKRMTLKDIYTWIEDHFPYFKHIAKPGWKNSIRHNLSLHDMFVRET---SANGKV 87 (142)
T ss_dssp ---CTTSCCSSCHHHHHHHHHHTSTTSEECHHHHHHHHHHHCTHHHHTSCTTHHHHHHHHHHHCTTEEEEE---CTTSCC
T ss_pred CCccCCCCCCCCHHHHHHHHHHhCCCCCcCHHHHHHHHHHhCCCccccCCCCccchhhhhhhhhhhheecC---CCCCCC
Confidence 34566789999999999999999999999999999999999999999 89999999999999999999873 578999
Q ss_pred eeeEeCCCccccc-cCCchhhhhh
Q psy13625 135 SYWTLDPDSYNMF-DNGSYLRRRR 157 (322)
Q Consensus 135 s~WtldPe~~~~f-~~g~~~RrRk 157 (322)
+||+|+|++...+ .++.|++.+.
T Consensus 88 ~~W~i~p~~~~~l~~d~~~k~~~~ 111 (142)
T 3g73_A 88 SFWTIHPSANRYLTLDQVFKPLDP 111 (142)
T ss_dssp EEEEECTTTCCCCCCC--------
T ss_pred ceEEECccccccchhhhhhccccC
Confidence 9999999997654 5555544443
No 12
>1uhm_A Histone H1, histone HHO1P; winged helix-turn-helix, linker histone, riken structural genomics/proteomics initiative, RSGI; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13
Probab=84.93 E-value=0.85 Score=34.75 Aligned_cols=33 Identities=27% Similarity=0.440 Sum_probs=28.9
Q ss_pred hHHHHHHHHHhc-CCCCcccHHHHHHHHHhhCCc
Q psy13625 67 SYIALIAMAIQN-APDKRCTLNGIYQFIMERFPY 99 (322)
Q Consensus 67 SYa~LIa~AI~s-Sp~krLTL~EIYewI~~~fPY 99 (322)
+|..||..||.. ...++.++..|-.||+.+|+.
T Consensus 6 ~y~~MI~eAI~~lker~GsS~~AIkKyI~~~y~~ 39 (78)
T 1uhm_A 6 SYRELIIEGLTALKERKGSSRPALKKFIKENYPI 39 (78)
T ss_dssp CHHHHHHHHHHHHCCSSCEEHHHHHHHHHTTSCT
T ss_pred CHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCCC
Confidence 599999999996 556689999999999999774
No 13
>1uss_A Histone H1; DNA binding protein, linker histone, DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13 PDB: 1yqa_A
Probab=84.65 E-value=1 Score=35.23 Aligned_cols=33 Identities=12% Similarity=0.266 Sum_probs=28.5
Q ss_pred hHHHHHHHHHhcC-CCCcccHHHHHHHHHhhCCc
Q psy13625 67 SYIALIAMAIQNA-PDKRCTLNGIYQFIMERFPY 99 (322)
Q Consensus 67 SYa~LIa~AI~sS-p~krLTL~EIYewI~~~fPY 99 (322)
+|..||..||... ..++.++.-|-.||+.+|+.
T Consensus 9 ~y~~MI~eAI~alker~GsS~~AIkKyI~~~y~~ 42 (88)
T 1uss_A 9 TYKEMILKSMPQLNDGKGSSRIVLKKYVKDTFSS 42 (88)
T ss_dssp CHHHHHHHHHHHSCCTTSBCHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHhccCCCcCHHHHHHHHHHhCCC
Confidence 5899999999974 45689999999999999763
No 14
>1hst_A Histone H5; chromosomal protein; 2.60A {Gallus gallus} SCOP: a.4.5.13
Probab=82.28 E-value=1.4 Score=34.79 Aligned_cols=32 Identities=22% Similarity=0.406 Sum_probs=28.2
Q ss_pred hHHHHHHHHHhcC-CCCcccHHHHHHHHHhhCC
Q psy13625 67 SYIALIAMAIQNA-PDKRCTLNGIYQFIMERFP 98 (322)
Q Consensus 67 SYa~LIa~AI~sS-p~krLTL~EIYewI~~~fP 98 (322)
+|..||..||... ..++.++.-|-.||+.+|+
T Consensus 9 ~y~~MI~eAI~~lker~GsS~~AI~KyI~~~y~ 41 (90)
T 1hst_A 9 TYSEMIAAAIRAEKSRGGSSRQSIQKYIKSHYK 41 (90)
T ss_dssp CHHHHHHHHHHTCCCSSCEEHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHhccCCCCCHHHHHHHHHHHcc
Confidence 5899999999975 4558999999999999976
No 15
>1ust_A Histone H1; DNA binding protein, linker histone, DNA binding domain, winged helix fold; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13
Probab=79.86 E-value=1.4 Score=34.90 Aligned_cols=33 Identities=27% Similarity=0.432 Sum_probs=28.6
Q ss_pred hHHHHHHHHHhcC-CCCcccHHHHHHHHHhhCCc
Q psy13625 67 SYIALIAMAIQNA-PDKRCTLNGIYQFIMERFPY 99 (322)
Q Consensus 67 SYa~LIa~AI~sS-p~krLTL~EIYewI~~~fPY 99 (322)
+|..||..||... ..++.++.-|-.||+.+|+.
T Consensus 9 ~y~~MI~eAI~alker~GsS~~AIkKyI~~~y~~ 42 (93)
T 1ust_A 9 SYRELIIEGLTALKERKGSSRPALKKFIKENYPI 42 (93)
T ss_dssp CHHHHHHHHHTTTTTTSCEEHHHHHHHHHHHCHH
T ss_pred CHHHHHHHHHHHcccCCCcCHHHHHHHHHHHCCC
Confidence 5899999999974 45689999999999999763
No 16
>2rqp_A Heterochromatin protein 1-binding protein 3; histone H1, alternative splicing, chromosomal protein, DNA-binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=77.41 E-value=1.7 Score=33.74 Aligned_cols=34 Identities=18% Similarity=0.381 Sum_probs=29.2
Q ss_pred hHHHHHHHHHhc-CCCCcccHHHHHHHHHhhCCcc
Q psy13625 67 SYIALIAMAIQN-APDKRCTLNGIYQFIMERFPYY 100 (322)
Q Consensus 67 SYa~LIa~AI~s-Sp~krLTL~EIYewI~~~fPYY 100 (322)
+|..||..||.. ...++.++..|-.||+++|+-+
T Consensus 11 ~y~~MI~eAI~~Lker~GsS~~AI~KyI~~~y~~~ 45 (88)
T 2rqp_A 11 KMDAILTEAIKACFQKSGASVVAIRKYIIHKYPSL 45 (88)
T ss_dssp CHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHCSTH
T ss_pred CHHHHHHHHHHHhccCCCcCHHHHHHHHHHhCCCC
Confidence 589999999996 4466799999999999999843
No 17
>2lso_A Histone H1X; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, nuclear protein; NMR {Homo sapiens}
Probab=63.90 E-value=1.9 Score=33.40 Aligned_cols=33 Identities=18% Similarity=0.119 Sum_probs=27.8
Q ss_pred ChHHHHHHHHHhcC-CCCcccHHHHHHHHHhhCC
Q psy13625 66 YSYIALIAMAIQNA-PDKRCTLNGIYQFIMERFP 98 (322)
Q Consensus 66 ySYa~LIa~AI~sS-p~krLTL~EIYewI~~~fP 98 (322)
-+|..||..||... ..++-++.-|..+|.+.++
T Consensus 6 ~~y~~MI~eAI~aLker~GSS~~AI~K~i~~~~~ 39 (83)
T 2lso_A 6 GKYSQLVVETIRRLGERNGSSLAKIYTEAKKVPW 39 (83)
Confidence 37999999999974 4567899999999998875
No 18
>1ghc_A GH1; chromosomal protein; NMR {Gallus gallus} SCOP: a.4.5.13
Probab=32.36 E-value=5.4 Score=29.70 Aligned_cols=30 Identities=20% Similarity=0.233 Sum_probs=25.8
Q ss_pred hHHHHHHHHHhcC-CCCcccHHHHHHHHHhh
Q psy13625 67 SYIALIAMAIQNA-PDKRCTLNGIYQFIMER 96 (322)
Q Consensus 67 SYa~LIa~AI~sS-p~krLTL~EIYewI~~~ 96 (322)
+|..||..||... ..++.++.-|-.+|+++
T Consensus 5 ~y~~mI~~AI~alker~GsS~~AI~Kyi~~~ 35 (75)
T 1ghc_A 5 SVTELITKAVSASKERKGLSLAALKKALAAG 35 (75)
T ss_dssp SHHHHHHHHHHHCSSSSCCTTSSGGGSSSSS
T ss_pred CHHHHHHHHHHHhccCCcccHHHHHHHHHHc
Confidence 4889999999975 45678999999999998
No 19
>2kpm_A Uncharacterized protein; methods development, structural genomics, PSI-2, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=28.51 E-value=1.3e+02 Score=24.40 Aligned_cols=40 Identities=10% Similarity=0.236 Sum_probs=32.6
Q ss_pred HHHHHHHHhc--CCCCcccHHHHHHHHHhhCCccccCCCCcc
Q psy13625 69 IALIAMAIQN--APDKRCTLNGIYQFIMERFPYYRENKQGWQ 108 (322)
Q Consensus 69 a~LIa~AI~s--Sp~krLTL~EIYewI~~~fPYYr~~~~GWK 108 (322)
..||..||.. ..++-..|.+|-.+|...+|=|..-.=|.+
T Consensus 23 ~~lL~~Ai~~~~dddGWa~Lg~vG~~L~k~~PdFDpRnYGy~ 64 (105)
T 2kpm_A 23 RKFVLAALEQSSDDAGWANLGNFGNYLNKLQPDFDSRLYGYK 64 (105)
T ss_dssp HHHHHHHHHHTBCTTSCEEHHHHHHHHHHHCTTCCGGGTTCS
T ss_pred HHHHHHHHHHhcCCcCcEeHHHHHHHHHHhCcCCCccccCcc
Confidence 5799999985 457889999999999999999976444444
No 20
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=27.64 E-value=13 Score=31.87 Aligned_cols=19 Identities=37% Similarity=0.674 Sum_probs=0.4
Q ss_pred ccccccCCCCCC--CCCCCCc
Q psy13625 267 RHHWYSSDHAAI--PGSGPPV 285 (322)
Q Consensus 267 ~~~~~~~~~~~~--~~~~~~~ 285 (322)
.|||||++|.++ +|++||.
T Consensus 3 ~~~~~~~~~~~~~~~~~~p~~ 23 (152)
T 4fla_A 3 HHHHHSSGRENLYFQGAGPLL 23 (152)
T ss_dssp --------------------C
T ss_pred ccccccCCCCCCCCCCCCCCC
Confidence 378889999876 5666663
No 21
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=25.73 E-value=18 Score=33.62 Aligned_cols=39 Identities=18% Similarity=0.372 Sum_probs=31.2
Q ss_pred HHHHHHHHHhcCCCCcccHHHH--HHHHHhhCCccccCCCCccc
Q psy13625 68 YIALIAMAIQNAPDKRCTLNGI--YQFIMERFPYYRENKQGWQN 109 (322)
Q Consensus 68 Ya~LIa~AI~sSp~krLTL~EI--YewI~~~fPYYr~~~~GWKN 109 (322)
-..||...|.-.|++|+|..|+ +.||.+ -|||+.- .|++
T Consensus 261 ~~dli~~lL~~dp~~R~t~~e~~~~~~i~~-Hp~F~~i--dw~~ 301 (311)
T 4aw0_A 261 ARDLVEKLLVLDATKRLGCEEMEGYGPLKA-HPFFESV--TWEN 301 (311)
T ss_dssp HHHHHHHHSCSSGGGSTTSGGGTCHHHHHT-SGGGTTC--CCTT
T ss_pred HHHHHHHHccCCHhHCcChHHHcCCHHHHC-CCCcCCC--CHHH
Confidence 4579999999999999999998 578875 5999753 4653
No 22
>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}
Probab=25.36 E-value=53 Score=26.80 Aligned_cols=50 Identities=20% Similarity=0.210 Sum_probs=20.1
Q ss_pred CcccccccCCCCCCCCC----CCCccceeccccCCCcccccccccCCceEeeec
Q psy13625 265 SNRHHWYSSDHAAIPGS----GPPVDIFESATIPGNANCQIGFRSAPTVVHYYQ 314 (322)
Q Consensus 265 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (322)
|..||||||.-.+-..+ |.++--|+-.++-|+.-----|+.-|+||.++-
T Consensus 4 ~~~~~~~~~~~~~~~~s~~~~~~~~p~f~l~~~~G~~~~l~~~~Gk~vll~F~a 57 (190)
T 2vup_A 4 SHHHHHHSSGLVPRGGSHMSAASSIFDFEVLDADHKPYNLVQHKGSPLLIYNVA 57 (190)
T ss_dssp --------------------CCCSGGGSCCBBTTSSBCCGGGGTTSCEEEEEEC
T ss_pred ccccccccccccccccccCCCCCcccCeEEEcCCCCEEEHHHcCCCEEEEEEec
Confidence 44456666654443333 333444555556666544445677888888874
No 23
>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A
Probab=21.83 E-value=38 Score=30.56 Aligned_cols=34 Identities=24% Similarity=0.358 Sum_probs=27.9
Q ss_pred hHHHHHHHHHhcCCCCcccHHHHHH--HHHhhCCcc
Q psy13625 67 SYIALIAMAIQNAPDKRCTLNGIYQ--FIMERFPYY 100 (322)
Q Consensus 67 SYa~LIa~AI~sSp~krLTL~EIYe--wI~~~fPYY 100 (322)
.-..||...|.-.|++|+|..||.+ |++..+|-|
T Consensus 238 ~~~~li~~~L~~dP~~R~s~~eil~hpw~k~~~p~~ 273 (275)
T 3hyh_A 238 GAAGLIKRMLIVNPLNRISIHEIMQDDWFKVDLPEY 273 (275)
T ss_dssp HHHHHHHHHSCSSGGGSCCHHHHHHCHHHHTTCCGG
T ss_pred HHHHHHHHHccCChhHCcCHHHHHcCcccccCCChh
Confidence 4678999999999999999999985 777666643
No 24
>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A
Probab=21.08 E-value=78 Score=25.48 Aligned_cols=33 Identities=15% Similarity=0.436 Sum_probs=19.4
Q ss_pred CCCccceeccccCC--CcccccccccCCceEeeec
Q psy13625 282 GPPVDIFESATIPG--NANCQIGFRSAPTVVHYYQ 314 (322)
Q Consensus 282 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 314 (322)
|-++--|+-.++-| ..--.-.|+.-|+||.+|.
T Consensus 33 G~~~P~f~l~~~~g~~~~~~l~~~~gk~vll~F~a 67 (176)
T 3kh7_A 33 GKPFPAFDLPSVQDPARRLTEADLKGKPALVNVWG 67 (176)
T ss_dssp TSBCCCCEEEBSSCTTSEEEGGGGCSSCEEEEEEC
T ss_pred CCcCCCcEecccCCCCceecHHHhCCCEEEEEEEC
Confidence 44444466556666 2223335667789998874
No 25
>2kzv_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; NMR {Chromobacterium violaceum}
Probab=20.46 E-value=2.1e+02 Score=22.27 Aligned_cols=43 Identities=12% Similarity=0.202 Sum_probs=34.7
Q ss_pred ChHHHHHHHHHhc--CCCCcccHHHHHHHHHhhCCccccCCCCcc
Q psy13625 66 YSYIALIAMAIQN--APDKRCTLNGIYQFIMERFPYYRENKQGWQ 108 (322)
Q Consensus 66 ySYa~LIa~AI~s--Sp~krLTL~EIYewI~~~fPYYr~~~~GWK 108 (322)
-.-..||..||.. ..++-..|.+|-++|...+|=|..-.=|.+
T Consensus 7 ~~l~~ll~~Ai~~~~dedGWa~Lg~vG~~i~k~~PdFD~RnYGy~ 51 (92)
T 2kzv_A 7 HPLQDMFTSAIEAVARDSGWAELSAVGSYLAKNDPSFDPRNWGHG 51 (92)
T ss_dssp SSHHHHHHHHHHHHTTTTSSCBHHHHHHHHHHHCTTCCTTTTCSS
T ss_pred HHHHHHHHHHHHHhcCCCCcEeHHHHHHHHHHhCcCCCccccCcc
Confidence 3456799999984 557889999999999999999986555544
Done!