RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13625
(322 letters)
>gnl|CDD|189470 pfam00250, Fork_head, Fork head domain.
Length = 96
Score = 189 bits (482), Expect = 4e-61
Identities = 72/96 (75%), Positives = 85/96 (88%)
Query: 63 KPPYSYIALIAMAIQNAPDKRCTLNGIYQFIMERFPYYRENKQGWQNSIRHNLSLNECFV 122
KPPYSYIALI MAIQ +P+K TL+ IYQ+IM+ FPYYR+NKQGWQNSIRHNLSLN+CF+
Sbjct: 1 KPPYSYIALITMAIQQSPEKMLTLSEIYQWIMDLFPYYRQNKQGWQNSIRHNLSLNKCFI 60
Query: 123 KIPRDDKKPGKGSYWTLDPDSYNMFDNGSYLRRRRR 158
K+PR KPGKGSYWTLDP+S NMF+NG YL+RR+R
Sbjct: 61 KVPRSPDKPGKGSYWTLDPESENMFENGKYLKRRKR 96
>gnl|CDD|214627 smart00339, FH, FORKHEAD. FORKHEAD, also known as a "winged
helix".
Length = 89
Score = 169 bits (430), Expect = 3e-53
Identities = 65/89 (73%), Positives = 79/89 (88%)
Query: 63 KPPYSYIALIAMAIQNAPDKRCTLNGIYQFIMERFPYYRENKQGWQNSIRHNLSLNECFV 122
KPPYSYIALIAMAI ++PDKR TL+ IY++I + FPYYREN+ GWQNSIRHNLSLN+CFV
Sbjct: 1 KPPYSYIALIAMAILSSPDKRLTLSEIYKWIEDNFPYYRENRAGWQNSIRHNLSLNDCFV 60
Query: 123 KIPRDDKKPGKGSYWTLDPDSYNMFDNGS 151
K+PR+ +PGKGSYWTLDP + NMF+NG+
Sbjct: 61 KVPREGDRPGKGSYWTLDPAAENMFENGN 89
>gnl|CDD|238016 cd00059, FH, Forkhead (FH), also known as a "winged helix". FH is
named for the Drosophila fork head protein, a
transcription factor which promotes terminal rather than
segmental development. This family of transcription
factor domains, which bind to B-DNA as monomers, are
also found in the Hepatocyte nuclear factor (HNF)
proteins, which provide tissue-specific gene regulation.
The structure contains 2 flexible loops or "wings" in
the C-terminal region, hence the term winged helix.
Length = 78
Score = 163 bits (414), Expect = 4e-51
Identities = 55/78 (70%), Positives = 68/78 (87%)
Query: 63 KPPYSYIALIAMAIQNAPDKRCTLNGIYQFIMERFPYYRENKQGWQNSIRHNLSLNECFV 122
KPPYSY ALIAMAIQ++P+KR TL+ IY++I + FPY+R+ GWQNSIRHNLSLN+CFV
Sbjct: 1 KPPYSYSALIAMAIQSSPEKRLTLSEIYKWISDNFPYFRDAPAGWQNSIRHNLSLNKCFV 60
Query: 123 KIPRDDKKPGKGSYWTLD 140
K+PR+ +PGKGSYWTLD
Sbjct: 61 KVPREPDEPGKGSYWTLD 78
>gnl|CDD|227358 COG5025, COG5025, Transcription factor of the Forkhead/HNF3 family
[Transcription].
Length = 610
Score = 82.6 bits (204), Expect = 2e-17
Identities = 39/86 (45%), Positives = 50/86 (58%)
Query: 58 GKDMVKPPYSYIALIAMAIQNAPDKRCTLNGIYQFIMERFPYYRENKQGWQNSIRHNLSL 117
KP +SY I AI ++P + TL+ IY +I PYYR WQNSIRHNLSL
Sbjct: 332 VNRTSKPAFSYANSITQAILSSPSGKMTLSEIYSWISSNLPYYRHKPTAWQNSIRHNLSL 391
Query: 118 NECFVKIPRDDKKPGKGSYWTLDPDS 143
N+ F K+PR +PGKG +W +D
Sbjct: 392 NKSFEKVPRSASQPGKGCFWKIDYSY 417
Score = 75.6 bits (186), Expect = 4e-15
Identities = 39/85 (45%), Positives = 50/85 (58%)
Query: 63 KPPYSYIALIAMAIQNAPDKRCTLNGIYQFIMERFPYYRENKQGWQNSIRHNLSLNECFV 122
PPYSY +AI N+PDK TL+ IY +I F YY + WQNSIRHNLSLN+ F+
Sbjct: 86 VPPYSYATGRGLAILNSPDKPLTLSKIYTWIHNTFFYYAKVVSRWQNSIRHNLSLNDAFI 145
Query: 123 KIPRDDKKPGKGSYWTLDPDSYNMF 147
KI + KG +W++ P F
Sbjct: 146 KIEGRNGAKVKGHFWSIGPGHETQF 170
Score = 30.5 bits (69), Expect = 1.2
Identities = 17/100 (17%), Positives = 28/100 (28%), Gaps = 4/100 (4%)
Query: 25 SVNSSNQIPPSYYEHYSRYSAYTSSPYSQQMVAGKDMVKPPY----SYIALIAMAIQNAP 80
PS E YS+ S P + + + ALI + ++
Sbjct: 180 GGKQMMFTLPSSTEIKITYSSTHSMPLLESNDSLNSNNERELLDIIKSSALIRIPADSSS 239
Query: 81 DKRCTLNGIYQFIMERFPYYRENKQGWQNSIRHNLSLNEC 120
+ +L P + G +N R N S
Sbjct: 240 NLDVSLGHHISQPSTHTPVLDNHSSGEENISRINNSSQID 279
>gnl|CDD|128904 smart00657, RPOL4c, DNA-directed RNA-polymerase II subunit.
Length = 118
Score = 33.9 bits (78), Expect = 0.026
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 152 YLRRRRRFKKKDVMKEKEEAIKRQHVHQAHLLQQENIL-KKAEEKLMSIKELK 203
YL + RFK +++++ +K + +H+ + Q N+ + AEE + I L+
Sbjct: 44 YLSKFARFKNREIVRAVRTLLKSKKLHKFEIAQLGNLRPETAEEAQLLIPSLE 96
>gnl|CDD|220764 pfam10454, DUF2458, Protein of unknown function (DUF2458). This a
is family of uncharacterized proteins.
Length = 155
Score = 34.5 bits (79), Expect = 0.033
Identities = 15/94 (15%), Positives = 38/94 (40%), Gaps = 1/94 (1%)
Query: 155 RRRRFKKKDVMKEKEEAIKRQHVHQAHLLQQ-ENILKKAEEKLMSIKELKPCKREPSNNL 213
R K + +++ I QH H+ ++ E +++K E + K+L P + +
Sbjct: 16 MREVSKNPEKLQKIRRLIIEQHRHERQWWKEREALIQKQEARKEDKKKLLPNGTDSKLSS 75
Query: 214 SSSCMGGSHLDIKPNTGDQMDILATDLVMGQHSN 247
+ + + + + ++ A D + + S
Sbjct: 76 VGAQVDDGSKNTRLEKELERELRAFDERVYKASK 109
>gnl|CDD|219737 pfam08172, CASP_C, CASP C terminal. This domain is the C-terminal
region of the CASP family of proteins. It is a Golgi
membrane protein which is thought to have a role in
vesicle transport.
Length = 245
Score = 30.4 bits (69), Expect = 1.0
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 156 RRRFKKKDVMKEKEEAIKRQHVHQAHLLQQE-NILKKAEEKLMS-IKELKPCKR--EPSN 211
R RF+K++ E EE +++Q+ L++E LK KL I+ L+ + PS+
Sbjct: 88 RDRFRKRNT--ELEEELRKQN-QTISSLRRELESLKADNIKLYEKIRYLQSYQGNSPPSD 144
Query: 212 NLSSSCMGGSHLDIKPNTGD 231
+ S+ G S L P + D
Sbjct: 145 SAVSNSPGRSSLQPGPGSID 164
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 30.9 bits (71), Expect = 1.1
Identities = 12/38 (31%), Positives = 25/38 (65%)
Query: 160 KKKDVMKEKEEAIKRQHVHQAHLLQQENILKKAEEKLM 197
KK+ +++ KEE K ++ + L ++ N L+K E++L+
Sbjct: 55 KKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLL 92
Score = 28.2 bits (64), Expect = 6.6
Identities = 11/45 (24%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 152 YLRRRRRFKKKDVMKEKEEAIKRQHVHQAHLLQQENILKKAEEKL 196
+ R F+K+ ++E+ +++ + LLQ+E L + E L
Sbjct: 66 IHKLRNEFEKE--LRERRNELQKL---EKRLLQKEENLDRKLELL 105
>gnl|CDD|202084 pfam01997, Translin, Translin family. Members of this family
include Translin that interacts with DNA and forms a
ring around the DNA. This family also includes human
translin-associated protein X, which was found to
interact with translin with yeast two-hybrid screen.
Length = 187
Score = 29.9 bits (68), Expect = 1.1
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 176 HVHQAHLLQQENILKKAEEKLMSIKEL 202
+H+ + E +LK+A+E L +KEL
Sbjct: 24 ALHRGDAEEAEELLKEAKELLAKLKEL 50
>gnl|CDD|226108 COG3580, COG3580, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 351
Score = 30.1 bits (68), Expect = 1.7
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 142 DSYNMFDNGSYLRRR--RRFKKKDVMK-EKEEAIKRQHVHQAHLLQQENILKKAEEKLMS 198
+ +N L+ + + FK+ + K E EEA+ Q + +E+I KK EE L
Sbjct: 139 YPFLDLENKELLKEQFYKVFKEIGLSKEENEEAV--QKAWKEGEEYREDIRKKGEEVLKY 196
Query: 199 IKE 201
+KE
Sbjct: 197 LKE 199
>gnl|CDD|221389 pfam12037, DUF3523, Domain of unknown function (DUF3523). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is typically
between 257 to 277 amino acids in length. This domain is
found associated with pfam00004. This domain has a
conserved LER sequence motif.
Length = 276
Score = 29.7 bits (67), Expect = 1.7
Identities = 11/50 (22%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 159 FKKKDVMKEKEE----AIKRQHVHQAHLLQQENILKKAEEKLMS-IKELK 203
+++ M+ E ++R+ + + L++ENI K E + KE +
Sbjct: 142 VLRQEAMRRATEEEILEMRRETIEEEAELERENIRAKIEAEARGRAKEER 191
>gnl|CDD|236872 PRK11183, PRK11183, D-lactate dehydrogenase; Provisional.
Length = 564
Score = 29.8 bits (68), Expect = 2.2
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 200 KELKPCKREPSNNLSSSCMGGS 221
K LKP REP + + SSC+G S
Sbjct: 122 KALKPLGREPHSVIGSSCIGAS 143
>gnl|CDD|238439 cd00862, ProRS_anticodon_zinc, ProRS Prolyl-anticodon binding
domain, long version found predominantly in eukaryotes
and archaea. ProRS belongs to class II aminoacyl-tRNA
synthetases (aaRS). This alignment contains the
anticodon binding domain, which is responsible for
specificity in tRNA-binding, so that the activated amino
acid is transferred to a ribose 3' OH group of the
appropriate tRNA only, and an additional C-terminal
zinc-binding domain specific to this subfamily of aaRSs.
Length = 202
Score = 29.2 bits (66), Expect = 2.2
Identities = 10/52 (19%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 152 YLRRRRRFKKKDVMKEKEEAIKRQHVHQAHLLQQENILKKAEEKLMSIKELK 203
+ RR +KK V E +++ + QE++ ++A E + + +
Sbjct: 85 VIVRRDTGEKKTV--PLAELVEKVPELLDEI--QEDLYERALEFRDATRIVD 132
>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin. Trichoplein
or mitostatin, was first defined as a meiosis-specific
nuclear structural protein. It has since been linked
with mitochondrial movement. It is associated with the
mitochondrial outer membrane, and over-expression leads
to reduction in mitochondrial motility whereas lack of
it enhances mitochondrial movement. The activity appears
to be mediated through binding the mitochondria to the
actin intermediate filaments (IFs).
Length = 349
Score = 29.5 bits (67), Expect = 2.5
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 15/52 (28%)
Query: 152 YLRRRRRFKKKDVMKEKEEAIKRQHVHQAHLLQQENILKKAEEKLMSIKELK 203
Y R+ R+ KEKEEA KR+ +Q+ L++A E+ + KE +
Sbjct: 213 YERKERQ-------KEKEEAEKRR--------RQKQELQRAREEQIEEKEER 249
>gnl|CDD|225324 COG2604, COG2604, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 594
Score = 29.3 bits (66), Expect = 3.0
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 158 RFKKKDVMKEKEEAIKRQHVHQAHLLQQENILKKAEEKLMSIKEL 202
R K + +K+KE+ + + ++ +AHL E I K E ++ SIK L
Sbjct: 552 RIYKLN-IKDKEDFLNKLYI-KAHLEWLEIIYGKLEAQIKSIKPL 594
>gnl|CDD|184430 PRK13975, PRK13975, thymidylate kinase; Provisional.
Length = 196
Score = 28.6 bits (64), Expect = 3.7
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 169 EEAIKRQHVHQAHLLQQENILKKAEEKLMSIKELKPCKREPSNN 212
EEA+KR + +++ LKK +EK + + + K P
Sbjct: 125 EEALKRMETRDKEIFEKKEFLKKVQEKYLELANNE--KFMPKYG 166
>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis). This nucleolar
family of proteins are involved in 60S ribosomal
biogenesis. They are specifically involved in the
processing beyond the 27S stage of 25S rRNA maturation.
This family contains sequences that bear similarity to
the glioma tumour suppressor candidate region gene 2
protein (p60). This protein has been found to interact
with herpes simplex type 1 regulatory proteins.
Length = 387
Score = 28.9 bits (65), Expect = 3.8
Identities = 12/59 (20%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 154 RRRRRFKKKDVMKEKEEAIKRQHVHQAHLLQQENILKKAEEKLMSIKELKPCKREPSNN 212
R + + +K+ + KEE ++ + Q L + + I K+ +K + K ++E
Sbjct: 283 RNKEKRRKELEREAKEEKQLKKKLAQ--LARLKEIAKEVAQKEKARARKKEQRKERGEK 339
>gnl|CDD|206034 pfam13863, DUF4200, Domain of unknown function (DUF4200). This
family is found in eukaryotes. It is a coiled-coil
domain of unknwon function.
Length = 126
Score = 27.6 bits (62), Expect = 4.2
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 12/69 (17%)
Query: 144 YNMFDNGSYLRRRRRFKK----KDVMKEKEEAIKRQHVHQAHLLQQENILKKAEEKLMS- 198
++ F + +RRR KK K + KEKEE IK L + LK EKL
Sbjct: 51 FDKFLKENEAKRRRAEKKAEEEKKLRKEKEEEIKE-------LKAELEELKAEIEKLEEK 103
Query: 199 IKELKPCKR 207
++E +P +
Sbjct: 104 LEEYQPYEE 112
>gnl|CDD|227443 COG5112, UFD2, U1-like Zn-finger-containing protein [General
function prediction only].
Length = 126
Score = 27.7 bits (61), Expect = 4.4
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 111 IRHNLSLNECFVKIPRDDKKPGKGSYWTLDPDSYNMFDNGSYLRRRRRFK-KKDVMKEKE 169
I+++LS E K+P D + PG G ++ ++ Y F L ++ K K KE
Sbjct: 31 IKNDLSTKESQKKLPYDPELPGLGQHYCIECARY--FITEKALMEHKKGKVHKRRAKELR 88
Query: 170 EAIKRQHVHQA 180
E Q +A
Sbjct: 89 EVPYTQEDAEA 99
>gnl|CDD|132488 TIGR03447, mycothiol_MshC, cysteine--1-D-myo-inosityl
2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members
of this protein family are MshC,
l-cysteine:1-D-myo-inosityl
2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an
enzyme that uses ATP to ligate a Cys residue to a
mycothiol precursor molecule, in the second to last step
in mycothiol biosynthesis. This enzyme shows
considerable homology to Cys--tRNA ligases, and many
instances are misannotated as such. Mycothiol is found
in Mycobacterium tuberculosis, Corynebacterium
glutamicum, Streptomyces coelicolor, and various other
members of the Actinobacteria. Mycothiol is an analog to
glutathione [Biosynthesis of cofactors, prosthetic
groups, and carriers, Glutathione and analogs].
Length = 411
Score = 28.5 bits (64), Expect = 4.5
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 268 HHWYSSDHAAIPGSGPPVDIFESAT 292
W + A+PG+GPP+ +F++A
Sbjct: 1 QSWPAPAVPALPGTGPPLRLFDTAD 25
>gnl|CDD|132332 TIGR03289, frhB, coenzyme F420 hydrogenase, subunit beta. This
model represents that clade of F420-dependent
hydrogenases (FRH) beta subunits found exclusively and
universally in methanogenic archaea. The N- and
C-terminal domains of this protein are modelled by
pfam04422 and pfam04423 respectively.
Length = 275
Score = 28.3 bits (63), Expect = 5.1
Identities = 17/66 (25%), Positives = 23/66 (34%), Gaps = 15/66 (22%)
Query: 74 MAIQNAPDKRCTLNGIYQFIMERFPYYRENKQGWQNSIRHNLSLNECFVKIPRDDKKP-- 131
+ ++N DK GIY ME FPY + I + K
Sbjct: 115 VGVRNVVDKIALSIGIY--CMENFPYE-----SLKTFINDKCGVT------MEQVTKMDI 161
Query: 132 GKGSYW 137
GKG +W
Sbjct: 162 GKGKFW 167
>gnl|CDD|165201 PHA02867, PHA02867, C-type lectin protein; Provisional.
Length = 167
Score = 27.7 bits (61), Expect = 5.5
Identities = 10/44 (22%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 99 YYRENKQGWQNSIRHNLSLNECFVKIPRDD-----KKPGKGSYW 137
Y+ N+ W +S + ++ ++ + + GKGSYW
Sbjct: 62 YFTINETNWNDSKKLCDVMDSSLIRFDNIETLNFVSRYGKGSYW 105
>gnl|CDD|236942 PRK11637, PRK11637, AmiB activator; Provisional.
Length = 428
Score = 28.5 bits (64), Expect = 5.7
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 6/48 (12%)
Query: 167 EKEEAIKRQHVHQAHLLQQENILKKAEEKLMSIKELKPCKREPSNNLS 214
KE+++++Q +A LL Q LKK EE +I + RE N L+
Sbjct: 58 AKEKSVRQQQQQRASLLAQ---LKKQEE---AISQASRKLRETQNTLN 99
>gnl|CDD|237312 PRK13236, PRK13236, nitrogenase reductase; Reviewed.
Length = 296
Score = 28.1 bits (62), Expect = 6.5
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 169 EEAIKRQHVHQAHLLQQENILKKAEEKLMSIKELKP 204
E KR + H + ++NI++ AE + M++ E P
Sbjct: 200 ETLAKRLNTQMIHFVPRDNIVQHAELRRMTVNEYAP 235
>gnl|CDD|234707 PRK00270, rpsU, 30S ribosomal protein S21; Reviewed.
Length = 64
Score = 25.6 bits (57), Expect = 7.3
Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 153 LRRRRRFKKKDVM--KEKEEAIKRQH 176
LRRR ++K ++K A KR+
Sbjct: 32 LRRREFYEKPSEKRKRKKAAARKRRR 57
>gnl|CDD|224364 COG1447, CelC, Phosphotransferase system cellobiose-specific
component IIA [Carbohydrate transport and metabolism].
Length = 105
Score = 26.8 bits (60), Expect = 7.4
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 16/54 (29%)
Query: 165 MKEKEEAIKRQHVHQAHLLQQEN---------ILKKAEEKLMS-------IKEL 202
++E +A+ H Q L+Q+E +L A++ LM+ IKEL
Sbjct: 42 IQEANDALNEAHHVQTKLIQKEASGEKIEVSLLLVHAQDHLMTTITEKDLIKEL 95
>gnl|CDD|222665 pfam14303, NAM-associated, No apical meristem-associated C-terminal
domain. This domain is found in a number of different
types of plant proteins including NAM-like proteins.
Length = 147
Score = 27.3 bits (61), Expect = 7.4
Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 12/58 (20%)
Query: 154 RRRRRFKKKDVMKEKEEAIKRQHVHQAHLLQQ------------ENILKKAEEKLMSI 199
+ RR K K +E E+ +++ L + E L K E+K+M
Sbjct: 70 EKLRRDKLKAKKEEAEKEKEKEERFMKALAEAEKERAELEKKKAEAKLMKEEKKIMFA 127
>gnl|CDD|147845 pfam05914, RIB43A, RIB43A. This family consists of several
RIB43A-like eukaryotic proteins. Ciliary and flagellar
microtubules contain a specialised set of
protofilaments, termed ribbons, that are composed of
tubulin and several associated proteins. RIB43A was
first characterized in the unicellular biflagellate,
Chlamydomonas reinhardtii although highly related
sequences are present in several higher eukaryotes
including humans. The function of this protein is
unknown although the structure of RIB43A and its
association with the specialised protofilament ribbons
and with basal bodies is relevant to the proposed role
of ribbons in forming and stabilising doublet and
triplet microtubules and in organising their
three-dimensional structure. Human RIB43A homologues
could represent a structural requirement in centriole
replication in dividing cells.
Length = 379
Score = 27.7 bits (62), Expect = 8.9
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 153 LRRRRRFKKKDVMKEKEEAIKRQHVHQAHLLQQ 185
RR R+ +K + ++ K Q Q +L ++
Sbjct: 328 ERRLRKELRKQLDSANQQLAKEQKAQQEYLNKE 360
>gnl|CDD|236466 PRK09325, PRK09325, coenzyme F420-reducing hydrogenase subunit
beta; Validated.
Length = 282
Score = 27.6 bits (62), Expect = 9.2
Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 10/46 (21%)
Query: 54 QMVAGKDMVKPPYSYIALIAMAIQNAPDKRCTLNGIYQFIMERFPY 99
Q+ A + P ++ PDK + GI F ME FPY
Sbjct: 105 QIQAVRKAQLYPVGM--------RHVPDKIALIVGI--FCMENFPY 140
>gnl|CDD|238133 cd00215, PTS_IIA_lac, PTS_IIA, PTS system, lactose/cellobiose
specific IIA subunit. The bacterial phosphoenolpyruvate:
sugar phosphotransferase system (PTS) is a multi-protein
system involved in the regulation of a variety of
metabolic and transcriptional processes. This family is
one of four structurally and functionally distinct group
IIA PTS system cytoplasmic enzymes, necessary for the
uptake of carbohydrates across the cytoplasmic membrane
and their phosphorylation. This family of proteins
normally function as a homotrimer, stabilized by a
centrally located metal ion. Separation into subunits is
thought to occur after phosphorylation.
Length = 97
Score = 26.0 bits (58), Expect = 9.5
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 16/54 (29%)
Query: 165 MKEKEEAIKRQHVHQAHLLQQEN---------ILKKAEEKLMS-------IKEL 202
++E +++ H Q LLQQE +L A++ LM+ KE+
Sbjct: 38 LEEANDSLNEAHHAQTKLLQQEASGEKVEVSLLLVHAQDHLMTTITLKDLAKEM 91
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.131 0.404
Gapped
Lambda K H
0.267 0.0708 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,468,345
Number of extensions: 1540282
Number of successful extensions: 1522
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1513
Number of HSP's successfully gapped: 48
Length of query: 322
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 225
Effective length of database: 6,635,264
Effective search space: 1492934400
Effective search space used: 1492934400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.5 bits)