RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13625
(322 letters)
>d1d5va_ a.4.5.14 (A:) Adipocyte-transcription factor FREAC-11 (s12,
fkh-14) {Human (Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 161 bits (408), Expect = 1e-50
Identities = 83/93 (89%), Positives = 91/93 (97%)
Query: 61 MVKPPYSYIALIAMAIQNAPDKRCTLNGIYQFIMERFPYYRENKQGWQNSIRHNLSLNEC 120
+VKPPYSYIALI MAIQNAP+K+ TLNGIYQFIM+RFP+YRENKQGWQNSIRHNLSLNEC
Sbjct: 2 LVKPPYSYIALITMAIQNAPEKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSLNEC 61
Query: 121 FVKIPRDDKKPGKGSYWTLDPDSYNMFDNGSYL 153
FVK+PRDDKKPGKGSYWTLDPDSYNMF+NGS+L
Sbjct: 62 FVKVPRDDKKPGKGSYWTLDPDSYNMFENGSFL 94
>d2hdca_ a.4.5.14 (A:) Genesis {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 97
Score = 158 bits (400), Expect = 2e-49
Identities = 70/97 (72%), Positives = 80/97 (82%)
Query: 62 VKPPYSYIALIAMAIQNAPDKRCTLNGIYQFIMERFPYYRENKQGWQNSIRHNLSLNECF 121
VKPPYSYIALI MAI +P K+ TL+GI +FI RFPYYRE WQNSIRHNLSLN+CF
Sbjct: 1 VKPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCF 60
Query: 122 VKIPRDDKKPGKGSYWTLDPDSYNMFDNGSYLRRRRR 158
VKIPR+ PGKG+YWTLDP S +MFDNGS+LRRR+R
Sbjct: 61 VKIPREPGNPGKGNYWTLDPQSEDMFDNGSFLRRRKR 97
>d2c6ya1 a.4.5.14 (A:1-98) Interleukin enhancer binding factor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 156 bits (396), Expect = 8e-49
Identities = 54/96 (56%), Positives = 68/96 (70%)
Query: 63 KPPYSYIALIAMAIQNAPDKRCTLNGIYQFIMERFPYYRENKQGWQNSIRHNLSLNECFV 122
KPPYSY LI AI APDK+ TLNGIY I + +PYYR +GWQNSIRHNLSLN F+
Sbjct: 3 KPPYSYAQLIVQAITMAPDKQLTLNGIYTHITKNYPYYRTADKGWQNSIRHNLSLNRYFI 62
Query: 123 KIPRDDKKPGKGSYWTLDPDSYNMFDNGSYLRRRRR 158
K+PR ++PGKGS+W +DP S + ++ +RR R
Sbjct: 63 KVPRSQEEPGKGSFWRIDPASESKLIEQAFRKRRPR 98
>d2a07f1 a.4.5.14 (F:503-584) Forkhead box protein P2, FOXP2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 128 bits (323), Expect = 4e-38
Identities = 35/84 (41%), Positives = 52/84 (61%), Gaps = 5/84 (5%)
Query: 62 VKPPYSYIALIAMAIQNAPDKRCTLNGIYQFIMERFPYYRENKQGWQNSIRHNLSLNECF 121
V+PP++Y LI AI + D++ TLN IY + F Y+R N W+N++RHNLSL++CF
Sbjct: 1 VRPPFTYATLIRQAIMESSDRQLTLNEIYSWFTRTFAYFRRNAATWKNAVRHNLSLHKCF 60
Query: 122 VKIPRDDKKPGKGSYWTLDPDSYN 145
V++ KG+ WT+D Y
Sbjct: 61 VRVEN-----VKGAVWTVDEVEYQ 79
>d1kq8a_ a.4.5.14 (A:) HFH-1 (HNF-3 forkhead homolog-1) {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 75
Score = 121 bits (305), Expect = 1e-35
Identities = 40/75 (53%), Positives = 57/75 (76%), Gaps = 1/75 (1%)
Query: 68 YIALIAMAIQNAPDKRCTLNGIYQFIMERFPYYRENKQGWQNSIRHNLSLNECFVKIPRD 127
YIALI MAI+++ R TL I +++M +FP++R + GW+NS+RHNLSLN+CFVK+ RD
Sbjct: 1 YIALITMAIRDSAGGRLTLAEINEYLMGKFPFFRGSYTGWRNSVRHNLSLNDCFVKVLRD 60
Query: 128 DKKP-GKGSYWTLDP 141
+P GK +YW L+P
Sbjct: 61 PSRPWGKDNYWMLNP 75
>d3bpya1 a.4.5.14 (A:93-177) Afx (Foxo4) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 85
Score = 121 bits (304), Expect = 3e-35
Identities = 34/83 (40%), Positives = 53/83 (63%), Gaps = 7/83 (8%)
Query: 63 KPPYSYIALIAMAIQNAPDKRCTLNGIYQFIMERFPYYRE-----NKQGWQNSIRHNLSL 117
SY LI+ AI++AP+KR TL IY++++ PY+++ + GW+NSIRHNLSL
Sbjct: 5 WGNQSYAELISQAIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLSL 64
Query: 118 NECFVKIPRDDKKPGKGSYWTLD 140
+ F+K+ + GK S+W L+
Sbjct: 65 HSKFIKVHNEA--TGKSSWWMLN 85
>d2btva_ e.28.1.1 (A:) BTV vp3 {Bluetongue virus, strain 1 [TaxId:
40051]}
Length = 845
Score = 31.7 bits (72), Expect = 0.12
Identities = 17/94 (18%), Positives = 29/94 (30%), Gaps = 10/94 (10%)
Query: 13 YRHNPAHHN--SSYSVNSSNQIPPSYYEHYSR---YSAYTSSPYSQQMVAGKDMVKPPYS 67
+R + A + ++ P+ Y H R Y S G M Y+
Sbjct: 383 FRADFATGTGYNGWATIDVEYRDPAPYVHAQRYIRYCGIDSRELINPTTYGIGMTYHCYN 442
Query: 68 YI--ALIAMAIQNAPDKRCTLNGIYQFIMERFPY 99
+ L+A + + + F M RF
Sbjct: 443 EMLRMLVAAGKDS---EAAYFRSMLPFHMVRFAR 473
>d2c35a1 a.60.8.2 (A:14-142) RNA polymerase II subunit RBP4 (RpoF)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 129
Score = 30.1 bits (68), Expect = 0.16
Identities = 9/48 (18%), Positives = 22/48 (45%)
Query: 152 YLRRRRRFKKKDVMKEKEEAIKRQHVHQAHLLQQENILKKAEEKLMSI 199
Y R RFK ++ + + ++ +H+ L N+ + E+ ++
Sbjct: 54 YTARFSRFKNRETIASVRSLLLQKKLHKFELACLANLCPETAEESKAL 101
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 138
Score = 29.1 bits (65), Expect = 0.38
Identities = 8/51 (15%), Positives = 19/51 (37%), Gaps = 5/51 (9%)
Query: 153 LRRRRRFKKKDVMKEKEEAIKRQHVHQAHLLQQENILKKAEEKLMSIKELK 203
K+ + +K E+ K +L++ +EK +E++
Sbjct: 86 ENNNFIKMAKEKLAQKMESNKENR-----EAHLAAMLERLQEKDKHAEEVR 131
>d2e2aa_ a.7.2.1 (A:) Enzyme IIa from lactose specific PTS, IIa-lac
{Lactococcus lactis [TaxId: 1358]}
Length = 104
Score = 26.1 bits (58), Expect = 2.8
Identities = 9/50 (18%), Positives = 18/50 (36%), Gaps = 12/50 (24%)
Query: 165 MKEKEEAIKRQHVHQAHLLQQEN---------ILKKAEEKLMS---IKEL 202
+ E I H Q +L +E + + LM+ +K++
Sbjct: 43 VVEAGSCIAEAHSSQTGMLAREASGEELPYSVTMMHGQLHLMTTILLKDV 92
>d1hfua3 b.6.1.3 (A:304-503) Laccase {Inky cap fungus (Coprinus
cinereus) [TaxId: 5346]}
Length = 200
Score = 26.3 bits (57), Expect = 4.1
Identities = 13/69 (18%), Positives = 25/69 (36%)
Query: 227 PNTGDQMDILATDLVMGQHSNYRHYYQSFGEDSTGTTGSNRHHWYSSDHAAIPGSGPPVD 286
P ++ ++ G H + H + S G++ N + D ++ +G V
Sbjct: 75 PRNQVVELVVPAGVLGGPHPFHLHGHAFSVVRSAGSSTYNFVNPVKRDVVSLGVTGDEVT 134
Query: 287 IFESATIPG 295
I PG
Sbjct: 135 IRFVTDNPG 143
>d1y14a_ a.60.8.2 (A:) RNA polymerase II subunit RBP4 (RpoF)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 176
Score = 26.0 bits (57), Expect = 5.2
Identities = 7/48 (14%), Positives = 21/48 (43%)
Query: 152 YLRRRRRFKKKDVMKEKEEAIKRQHVHQAHLLQQENILKKAEEKLMSI 199
YL RF+ ++ + + +K +H + Q ++ ++ ++
Sbjct: 102 YLTNFSRFRDQETVGAVIQLLKSTGLHPFEVAQLGSLACDTADEAKTL 149
>d2d7va1 d.227.1.1 (A:7-161) Hypothetical protein VCA0330 {Vibrio
cholerae [TaxId: 666]}
Length = 155
Score = 25.9 bits (56), Expect = 5.3
Identities = 11/43 (25%), Positives = 15/43 (34%)
Query: 242 MGQHSNYRHYYQSFGEDSTGTTGSNRHHWYSSDHAAIPGSGPP 284
M +HS + + E T S H W + I S P
Sbjct: 2 MSEHSAIVTWKRKDSEAFTDNQYSRAHTWEFDGGSKILASASP 44
>d1ub2a2 a.93.1.3 (A:427-720) Catalase-peroxidase KatG
{Synechococcus sp. pcc 7942 [TaxId: 1140]}
Length = 294
Score = 25.9 bits (56), Expect = 7.2
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 236 LATDLVMGQHSNYRHYYQSFGED 258
DLV G +S R Y + + +D
Sbjct: 246 TRVDLVFGSNSILRAYSELYAQD 268
>d1ew0a_ d.110.3.2 (A:) Histidine kinase FixL heme domain {Rhizobium
meliloti [TaxId: 382]}
Length = 130
Score = 25.0 bits (53), Expect = 8.3
Identities = 6/22 (27%), Positives = 15/22 (68%)
Query: 180 AHLLQQENILKKAEEKLMSIKE 201
+H+L+ E++++ + L SI +
Sbjct: 2 SHMLETEDVVRARDAHLRSILD 23
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
protein 1 (GBP1), C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 300
Score = 25.5 bits (55), Expect = 8.9
Identities = 10/51 (19%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 153 LRRRRRFKKKDVMKEKEEAIKRQHVHQAHLLQQENILKKAEEKLMSIKELK 203
L + + ++KE+E + + Q LL++ K++ I++L+
Sbjct: 248 LTEKMENDRVQLLKEQERTLALKLQEQEQLLKEG-FQKESRIMKNEIQDLQ 297
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.131 0.404
Gapped
Lambda K H
0.267 0.0606 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,276,709
Number of extensions: 60919
Number of successful extensions: 204
Number of sequences better than 10.0: 1
Number of HSP's gapped: 200
Number of HSP's successfully gapped: 30
Length of query: 322
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 237
Effective length of database: 1,240,546
Effective search space: 294009402
Effective search space used: 294009402
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.5 bits)