BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13626
(127 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q14161|GIT2_HUMAN ARF GTPase-activating protein GIT2 OS=Homo sapiens GN=GIT2 PE=1
SV=2
Length = 759
Score = 92.8 bits (229), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 81/118 (68%), Gaps = 16/118 (13%)
Query: 20 MPQSEEVVRRTDQVTKRIQELAAHMRSS--DKCHSFVPHAERIRIAVSELSAIFPQNTNN 77
+P +E+V+R+T+Q+TK IQEL +R++ +K S++P +ERI +AV+E++A+FP+ +
Sbjct: 637 LPSTEDVIRKTEQITKNIQEL---LRAAQENKHDSYIPCSERIHVAVTEMAALFPKKPKS 693
Query: 78 DLIRHALRSLNTSTVRLQAECAQ-LEGS----------AERVRSCAYNMAKANKQLLT 124
D++R +LR L +S RLQ+EC + L G ++V CAY++AKA KQL+T
Sbjct: 694 DMVRTSLRLLTSSAYRLQSECKKTLPGDPGSPTDVQLVTQQVIQCAYDIAKAAKQLVT 751
>sp|Q9JLQ2|GIT2_MOUSE ARF GTPase-activating protein GIT2 OS=Mus musculus GN=Git2 PE=1
SV=2
Length = 708
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 81/118 (68%), Gaps = 16/118 (13%)
Query: 20 MPQSEEVVRRTDQVTKRIQELAAHMRSS--DKCHSFVPHAERIRIAVSELSAIFPQNTNN 77
+P +E+V+R+T+Q+TK IQEL +R++ +K S++P +ERI +AV+E++A+FP+ +
Sbjct: 586 LPSTEDVIRKTEQITKNIQEL---LRAAQENKHDSYIPCSERIHVAVTEMAALFPKKPKS 642
Query: 78 DLIRHALRSLNTSTVRLQAECAQ-LEGSA----------ERVRSCAYNMAKANKQLLT 124
D +R +LR L +S RLQ+EC + L G + ++V CAY++AKA KQL+T
Sbjct: 643 DTVRTSLRLLTSSAYRLQSECRKALPGDSSLPTDVQLVTQQVIQCAYDIAKAAKQLVT 700
>sp|Q9Z272|GIT1_RAT ARF GTPase-activating protein GIT1 OS=Rattus norvegicus GN=Git1
PE=1 SV=1
Length = 770
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 75/118 (63%), Gaps = 16/118 (13%)
Query: 20 MPQSEEVVRRTDQVTKRIQELAAHMRSSD--KCHSFVPHAERIRIAVSELSAIFPQNTNN 77
+P +E+V+ +T+QVTK IQEL +R++ K SFVP +E+I +AV+E++++FP+
Sbjct: 648 LPSTEDVILKTEQVTKNIQEL---LRAAQEFKHDSFVPCSEKIHLAVTEMASLFPKRPAL 704
Query: 78 DLIRHALRSLNTSTVRLQAEC-----------AQLEGSAERVRSCAYNMAKANKQLLT 124
+ +R +LR LN S RLQ+EC + ++V CAY++AKA KQL+T
Sbjct: 705 EPVRSSLRLLNASAYRLQSECRKTVPPEPGAPVDFQLLTQQVIQCAYDIAKAAKQLVT 762
>sp|Q9Y2X7|GIT1_HUMAN ARF GTPase-activating protein GIT1 OS=Homo sapiens GN=GIT1 PE=1
SV=2
Length = 761
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 75/118 (63%), Gaps = 16/118 (13%)
Query: 20 MPQSEEVVRRTDQVTKRIQELAAHMRSSD--KCHSFVPHAERIRIAVSELSAIFPQNTNN 77
+P +E+V+ +T+QVTK IQEL +R++ K SFVP +E+I +AV+E++++FP+
Sbjct: 639 LPSTEDVILKTEQVTKNIQEL---LRAAQEFKHDSFVPCSEKIHLAVTEMASLFPKRPAL 695
Query: 78 DLIRHALRSLNTSTVRLQAEC-----------AQLEGSAERVRSCAYNMAKANKQLLT 124
+ +R +LR LN S RLQ+EC + ++V CAY++AKA KQL+T
Sbjct: 696 EPVRSSLRLLNASAYRLQSECRKTVPPEPGAPVDFQLLTQQVIQCAYDIAKAAKQLVT 753
>sp|Q68FF6|GIT1_MOUSE ARF GTPase-activating protein GIT1 OS=Mus musculus GN=Git1 PE=1
SV=1
Length = 770
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 75/118 (63%), Gaps = 16/118 (13%)
Query: 20 MPQSEEVVRRTDQVTKRIQELAAHMRSSD--KCHSFVPHAERIRIAVSELSAIFPQNTNN 77
+P +E+V+ +T+QVTK IQEL +R++ K SFVP +E+I +AV+E++++FP+
Sbjct: 648 LPSTEDVILKTEQVTKNIQEL---LRAAQEFKHDSFVPCSEKIHLAVTEMASLFPKRPAL 704
Query: 78 DLIRHALRSLNTSTVRLQAEC-----------AQLEGSAERVRSCAYNMAKANKQLLT 124
+ +R +LR LN S RLQ+EC + ++V CAY++AKA KQL+T
Sbjct: 705 EPVRSSLRLLNASAYRLQSECRKTVPPEPGAPVDFQLLTQQVIQCAYDIAKAAKQLVT 762
>sp|Q6AQ11|ATPG_DESPS ATP synthase gamma chain OS=Desulfotalea psychrophila (strain
LSv54 / DSM 12343) GN=atpG PE=3 SV=1
Length = 290
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 10/65 (15%)
Query: 20 MPQSEEV------VRRTDQVTKRIQELAA-HMRSS-DKCHSFVPHAERIRIAVSELSAIF 71
MP +EV V++T Q+TK + +AA +R + DK SF P+A + A+S LS
Sbjct: 1 MPSLKEVKTKITGVKKTSQITKAMNMVAASRLRGAQDKMESFRPYASKFSEAMSNLSG-- 58
Query: 72 PQNTN 76
NTN
Sbjct: 59 GGNTN 63
>sp|Q9K6H4|ATPG_BACHD ATP synthase gamma chain OS=Bacillus halodurans (strain ATCC
BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
GN=atpG PE=3 SV=1
Length = 285
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 28 RRTDQVTKRIQELAAHM--RSSDKCHSFVPHAERIRIAVSELSA 69
++T Q+TK ++ ++A RS +K SF+P+ ++IR V+ ++A
Sbjct: 15 KKTKQITKAMEMVSAAKLNRSQEKAQSFLPYTDKIREVVASIAA 58
>sp|Q99PE7|ABCG5_RAT ATP-binding cassette sub-family G member 5 OS=Rattus norvegicus
GN=Abcg5 PE=2 SV=3
Length = 652
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 4 PNQNNYMECFQSTTTRMPQSEEVVRRTDQVTKRIQELAAHMRSSDKCHSFVPHAERIR 61
P +N + + T+ QS E R + KR+Q L + R SD CH + + ER R
Sbjct: 293 PEHSNPFDFYMDLTSVDTQSRE---REIETYKRVQMLESAFRQSDICHKILENIERTR 347
>sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protein At3g24000,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2
SV=1
Length = 633
Score = 32.3 bits (72), Expect = 0.88, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 9/70 (12%)
Query: 8 NYMECFQSTTTRMPQSEEVVRRTDQVTKRIQELA---------AHMRSSDKCHSFVPHAE 58
N + F + R PQ EE+ R+ ++V +I+EL H+ ++ + H+E
Sbjct: 508 NAIHMFVANDERHPQREEIARKWEEVLAKIKELGYVPDTSHVIVHVDQQEREVNLQYHSE 567
Query: 59 RIRIAVSELS 68
+I +A + L+
Sbjct: 568 KIALAFALLN 577
>sp|Q9GZH3|IMDH_CAEEL Inosine-5'-monophosphate dehydrogenase OS=Caenorhabditis elegans
GN=T22D1.3 PE=2 SV=2
Length = 534
Score = 32.3 bits (72), Expect = 1.0, Method: Composition-based stats.
Identities = 30/107 (28%), Positives = 45/107 (42%), Gaps = 23/107 (21%)
Query: 10 MECFQSTTTRMPQSEEVVRRTDQVTKRIQELAAHMRSSDKCHSFVPHAER------IRIA 63
ME S+ R +E +DQ+ K Q ++A M+ CH F+P+ R I
Sbjct: 439 MEAHASSQDRYFTAE-----SDQI-KVAQGVSATMKDRGSCHKFIPYLIRGVQHGMQDIG 492
Query: 64 VSELSAIFPQNTNNDLIRHALRSLNTSTVRLQAECAQLEGSAERVRS 110
V L F + +N +++ RS N AQLEG + S
Sbjct: 493 VRSLRD-FREKVDNGIVKFERRSTN----------AQLEGGVHSLHS 528
>sp|Q5BHD6|RAD5_EMENI DNA repair protein rad5 OS=Emericella nidulans (strain FGSC A4 / ATCC
38163 / CBS 112.46 / NRRL 194 / M139) GN=rad5 PE=3 SV=1
Length = 1202
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 35 KRIQELAAHMRSSDKCHSFVPHAERIRIAVSELSAIFPQNTNN-DLIRHALRSLNTSTVR 93
+RI L+ +S K H+ + H +R+ S +F Q T+ DLI L S VR
Sbjct: 986 RRINPLSPSAHTSAKIHALLAHL--VRVPAGTKSVVFSQFTSFLDLIGPQLTKAGISFVR 1043
Query: 94 LQAECAQ 100
L AQ
Sbjct: 1044 LDGTMAQ 1050
>sp|Q9CAY1|PP223_ARATH Putative pentatricopeptide repeat-containing protein At3g11460
OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1
Length = 623
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 22 QSEEVVRRTDQVTKRIQELAAHM---RSSDKCHSFVPHAERIRIAVSELSAI 70
Q+EEV R D++ + ELA +M R + + H+ER+ IA L++I
Sbjct: 518 QTEEVHRMLDELETSVMELAGNMDCDRGEEVSSTTREHSERLAIAFGILNSI 569
>sp|A2BSA7|PNP_PROMS Polyribonucleotide nucleotidyltransferase OS=Prochlorococcus
marinus (strain AS9601) GN=pnp PE=3 SV=1
Length = 721
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 26/43 (60%)
Query: 3 IPNQNNYMECFQSTTTRMPQSEEVVRRTDQVTKRIQELAAHMR 45
+P + + Q + R+ + E+VVR+ D+VT R++E+ + R
Sbjct: 651 LPGKEGMVHISQLSEARVERVEDVVRQGDEVTVRVREIDSRGR 693
>sp|A3PE40|PNP_PROM0 Polyribonucleotide nucleotidyltransferase OS=Prochlorococcus
marinus (strain MIT 9301) GN=pnp PE=3 SV=1
Length = 721
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 26/43 (60%)
Query: 3 IPNQNNYMECFQSTTTRMPQSEEVVRRTDQVTKRIQELAAHMR 45
+P + + Q + R+ + E+VVR+ D+VT R++E+ + R
Sbjct: 651 LPGKEGMVHISQLSEARVERVEDVVRQGDEVTVRVREIDSRGR 693
>sp|A2BXQ9|PNP_PROM5 Polyribonucleotide nucleotidyltransferase OS=Prochlorococcus
marinus (strain MIT 9515) GN=pnp PE=3 SV=1
Length = 721
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 26/43 (60%)
Query: 3 IPNQNNYMECFQSTTTRMPQSEEVVRRTDQVTKRIQELAAHMR 45
+P + + Q + R+ + E+VVR+ D+VT R++E+ + R
Sbjct: 651 LPGKEGMVHISQLSEARVERVEDVVRQGDEVTVRVREIDSRGR 693
>sp|Q7V0R5|PNP_PROMP Polyribonucleotide nucleotidyltransferase OS=Prochlorococcus
marinus subsp. pastoris (strain CCMP1986 / MED4) GN=pnp
PE=3 SV=1
Length = 721
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 26/43 (60%)
Query: 3 IPNQNNYMECFQSTTTRMPQSEEVVRRTDQVTKRIQELAAHMR 45
+P + + Q + R+ + E+VVR+ D+VT R++E+ + R
Sbjct: 651 LPGKEGMVHISQLSEARVERVEDVVRQGDEVTVRVREIDSRGR 693
>sp|A8G5Y9|PNP_PROM2 Polyribonucleotide nucleotidyltransferase OS=Prochlorococcus
marinus (strain MIT 9215) GN=pnp PE=3 SV=1
Length = 721
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 26/43 (60%)
Query: 3 IPNQNNYMECFQSTTTRMPQSEEVVRRTDQVTKRIQELAAHMR 45
+P + + Q + R+ + E+VVR+ D+VT R++E+ + R
Sbjct: 651 LPGKEGMVHISQLSEARVERVEDVVRQGDEVTVRVREIDSRGR 693
>sp|Q319U4|PNP_PROM9 Polyribonucleotide nucleotidyltransferase OS=Prochlorococcus
marinus (strain MIT 9312) GN=pnp PE=3 SV=1
Length = 721
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 26/43 (60%)
Query: 3 IPNQNNYMECFQSTTTRMPQSEEVVRRTDQVTKRIQELAAHMR 45
+P + + Q + R+ + E+VVR+ D+VT R++E+ + R
Sbjct: 651 LPGKEGMVHISQLSEARVERVEDVVRQGDEVTVRVREIDSRGR 693
>sp|Q61001|LAMA5_MOUSE Laminin subunit alpha-5 OS=Mus musculus GN=Lama5 PE=1 SV=4
Length = 3718
Score = 29.3 bits (64), Expect = 8.5, Method: Composition-based stats.
Identities = 15/74 (20%), Positives = 35/74 (47%)
Query: 6 QNNYMECFQSTTTRMPQSEEVVRRTDQVTKRIQELAAHMRSSDKCHSFVPHAERIRIAVS 65
Q + +T + + ++++++ V + + ELA+ M + VP E++R A++
Sbjct: 2260 QGQAGQLLDTTESTLGRAQKLLESVRAVGRALNELASRMGQGSPGDALVPSGEQLRWALA 2319
Query: 66 ELSAIFPQNTNNDL 79
E+ + DL
Sbjct: 2320 EVERLLWDMRTRDL 2333
>sp|Q2TBQ9|KLC3_BOVIN Kinesin light chain 3 OS=Bos taurus GN=KLC3 PE=2 SV=1
Length = 505
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 45/113 (39%), Gaps = 12/113 (10%)
Query: 21 PQSEEVVRRTDQVTKRIQELAAHMRSSDKCHSFVPHAERIRIAVSELSAIFPQNTNNDLI 80
P EE+VR+T QV K ++ L A R H A + + ++
Sbjct: 18 PSPEELVRQTRQVVKGLEALRAEHR------GLAGHLAEALAAQGPAAGLELLEEKQQVV 71
Query: 81 RHALRSLNTS------TVRLQAECAQLEGSAERVRSCAYNMAKANKQLLTQFQ 127
H+L ++ + L A LE +R+R+ A +A+ N L + +
Sbjct: 72 SHSLEAIELGLGEAQVLLALSAHVGALEAEKQRLRAQARRLAQENAWLREELE 124
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.125 0.351
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,375,353
Number of Sequences: 539616
Number of extensions: 1138590
Number of successful extensions: 4482
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 4455
Number of HSP's gapped (non-prelim): 44
length of query: 127
length of database: 191,569,459
effective HSP length: 93
effective length of query: 34
effective length of database: 141,385,171
effective search space: 4807095814
effective search space used: 4807095814
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)