Query psy13626
Match_columns 127
No_of_seqs 38 out of 40
Neff 4.0
Searched_HMMs 29240
Date Fri Aug 16 16:05:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13626.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13626hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jx0_A ARF GTPase-activating p 100.0 6.8E-52 2.3E-56 312.0 9.5 115 12-127 5-130 (135)
2 3gm3_A Protein tyrosine kinase 95.2 0.21 7.1E-06 38.1 9.9 101 22-124 20-136 (153)
3 1k04_A FADK 1, focal adhesion 93.4 0.94 3.2E-05 34.7 10.1 101 22-124 30-146 (162)
4 1sj8_A Talin 1; structural pro 93.3 1 3.5E-05 37.5 11.0 103 22-126 123-239 (308)
5 3t6g_B Breast cancer anti-estr 92.9 1 3.5E-05 36.3 10.0 98 26-123 108-218 (229)
6 3dyj_A Talin-1; helix bundles, 91.6 1.9 6.4E-05 36.2 10.6 104 20-124 208-324 (332)
7 2jsw_A Talin-1; C-terminal act 91.5 0.9 3.1E-05 35.3 8.0 108 17-124 43-179 (189)
8 2l6f_A Focal adhesion kinase 1 88.2 0.086 3E-06 42.1 0.0 101 23-125 8-124 (215)
9 1tr2_A Vinculin isoform 1; act 86.2 1.6 5.4E-05 40.8 7.0 103 22-124 915-1039(1066)
10 1sj8_A Talin 1; structural pro 85.2 3.7 0.00013 34.2 8.1 92 32-125 105-204 (308)
11 1qkr_A Vinculin, tail domain; 85.0 4.1 0.00014 31.6 7.8 103 22-124 37-161 (188)
12 1u89_A Talin 1, talin; 4-helix 71.0 29 0.00099 25.6 12.8 100 21-124 12-122 (139)
13 3vf0_A Vinculin, metavinculin; 70.0 31 0.0011 28.4 9.1 102 23-124 133-256 (283)
14 1bh9_A TAFII18; histone fold, 67.5 11 0.00037 22.8 4.5 34 12-45 10-43 (45)
15 3ay5_A Cyclin-D1-binding prote 66.2 54 0.0019 27.0 11.3 113 12-125 4-135 (360)
16 2x0c_A Talin-1; cytoskeleton, 64.3 43 0.0015 27.3 8.9 50 76-125 137-192 (309)
17 1xwj_B Talin, metavinculin; ce 61.1 11 0.00037 20.2 3.3 22 24-45 4-25 (26)
18 3fyq_A CG6831-PA (talin); 5-he 56.2 53 0.0018 25.7 7.7 58 9-68 24-89 (199)
19 1h6g_A Alpha-1 catenin; adhesi 53.6 66 0.0023 25.0 8.0 90 32-122 142-249 (256)
20 2qsb_A UPF0147 protein TA0600; 52.0 49 0.0017 22.9 6.2 51 27-83 5-55 (89)
21 1l9l_A Granulysin; saposin fol 49.0 27 0.00093 22.5 4.3 40 61-101 8-48 (74)
22 3l39_A Putative PHOU-like phos 48.5 44 0.0015 25.2 6.1 27 20-46 26-52 (227)
23 2l10_A Talin-1; helical bundle 47.3 85 0.0029 23.3 8.5 101 25-125 42-153 (158)
24 4f7g_B Talin-1; alpha-helix bu 46.2 62 0.0021 25.4 6.7 45 27-73 65-109 (216)
25 3dyj_A Talin-1; helix bundles, 43.7 1.4E+02 0.0048 24.8 10.1 101 22-124 115-230 (332)
26 1qsd_A Protein (beta-tubulin b 43.4 16 0.00054 25.6 2.6 43 52-94 61-103 (106)
27 1qkr_A Vinculin, tail domain; 43.3 39 0.0013 26.1 5.1 35 11-46 54-89 (188)
28 2fb5_A Hypothetical membrane s 42.1 1.2E+02 0.0042 23.7 8.8 88 8-118 3-90 (205)
29 2l7a_A Talin-1; vinculin, bund 40.2 1E+02 0.0035 22.3 7.4 73 51-123 40-125 (131)
30 1r0d_A HIP1-related, huntingti 35.4 1.6E+02 0.0054 23.0 10.4 79 20-98 52-156 (206)
31 3zx6_A HAMP, methyl-accepting 34.9 1.7E+02 0.0057 23.1 8.8 18 29-46 196-213 (341)
32 1otr_A Protein CUE2; protein-p 33.2 38 0.0013 20.7 2.9 27 61-88 5-31 (49)
33 2l7a_A Talin-1; vinculin, bund 32.5 57 0.0019 23.7 4.2 70 22-91 38-121 (131)
34 2jx0_A ARF GTPase-activating p 32.3 70 0.0024 23.7 4.7 57 18-74 64-132 (135)
35 2di0_A Activating signal coint 31.6 61 0.0021 21.4 3.9 39 54-93 7-45 (71)
36 2olt_A Hypothetical protein; s 30.7 53 0.0018 24.2 3.9 36 6-46 4-39 (227)
37 2olt_A Hypothetical protein; s 27.8 1.8E+02 0.0061 21.2 6.6 20 105-124 206-225 (227)
38 2dhy_A CUE domain-containing p 27.0 57 0.002 21.0 3.1 28 61-89 19-46 (67)
39 1r0d_A HIP1-related, huntingti 26.4 2.3E+02 0.0078 22.0 8.3 21 104-124 134-154 (206)
40 3dyt_A Sorting nexin-9; 3-heli 24.7 2.7E+02 0.0093 22.3 7.5 92 32-123 179-278 (366)
41 2gs4_A Protein YCIF; stress pr 24.2 44 0.0015 24.7 2.4 68 31-98 22-92 (166)
42 1qu7_A Methyl-accepting chemot 24.2 2.3E+02 0.0079 21.3 7.6 17 29-45 116-132 (227)
43 2qzg_A Conserved uncharacteriz 23.9 1.9E+02 0.0064 20.1 6.8 30 52-83 30-59 (94)
44 4akv_A Sorting nexin-33; trans 23.5 3E+02 0.01 22.4 8.7 72 53-124 222-299 (386)
45 3ay5_A Cyclin-D1-binding prote 22.8 3.1E+02 0.011 22.4 7.6 73 26-99 247-323 (360)
46 4g3o_A E3 ubiquitin-protein li 22.0 1.3E+02 0.0043 19.2 4.0 27 59-86 16-42 (58)
47 3lyg_A NTF2-like protein of un 21.5 1.2E+02 0.004 22.1 4.1 42 34-75 5-63 (120)
48 3tul_A Cell invasion protein S 21.3 2.3E+02 0.0079 21.4 5.9 40 51-90 76-115 (158)
49 1wgl_A TOLL-interacting protei 21.2 65 0.0022 20.1 2.4 26 62-88 11-36 (59)
No 1
>2jx0_A ARF GTPase-activating protein GIT1; paxillin binding domain homologue, ANK repeat, cytoplasm, GTPase activation, metal-binding; NMR {Rattus norvegicus}
Probab=100.00 E-value=6.8e-52 Score=312.04 Aligned_cols=115 Identities=40% Similarity=0.611 Sum_probs=110.0
Q ss_pred hhhccCCCCCChhHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhhhh
Q psy13626 12 CFQSTTTRMPQSEEVVRRTDQVTKRIQELAAHMRSSDKCHSFVPHAERIRIAVSELSAIFPQNTNNDLIRHALRSLNTST 91 (127)
Q Consensus 12 ~~~~~~~~~P~~e~Vir~TE~vTr~IqeLl~aaq~~~~~~~fvpcae~I~~AV~el~aLFP~~~~~e~vr~~L~~L~~~a 91 (127)
+|+|+++++|++|||+||||+|||||||||+|||++ ++++|+||||||++||+||++|||++|++|+||.+|++|++++
T Consensus 5 ~~~~~~~~~P~~e~Vvr~TE~ITk~IqeLl~AaQ~~-~~~sfvpcserI~~AV~el~aLfp~~p~~etvr~sL~~L~~~a 83 (135)
T 2jx0_A 5 LDGDPDPGLPSTEDVILKTEQVTKNIQELLRAAQEF-KHDSFVPCSEKIHLAVTEMASLFPKRPALEPVRSSLRLLNASA 83 (135)
T ss_dssp CCSSCBSSCSCHHHHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHTSCSSBCCHHHHHHHHHHHHHH
T ss_pred cccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhcc-ccCccccHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999998 5799999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhh-----------HhhHHHHHHHHHHHHHhHhhhhhhcC
Q psy13626 92 VRLQAECAQL-----------EGSAERVRSCAYNMAKANKQLLTQFQ 127 (127)
Q Consensus 92 ~~Lq~eC~~l-----------q~~t~qv~~cAYdIAKAaK~LvT~f~ 127 (127)
.+||+||..+ |++|+|||+||||||||||+|||.|+
T Consensus 84 ~~Lq~EC~~~q~~~~~~~~~iq~~tqqVi~cAYdIAkAaK~Lvt~~~ 130 (135)
T 2jx0_A 84 YRLQSECRKTVPPEPGAPVDFQLLTQQVIQCAYDIAKAAKQLVTITT 130 (135)
T ss_dssp HHHHHHHHSCCCSCTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCcccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999554 56699999999999999999999985
No 2
>3gm3_A Protein tyrosine kinase 2 beta; four-helix bundle, transferase; 2.60A {Homo sapiens} SCOP: a.24.14.0 PDB: 3gm1_A 3gm2_A 3u3f_A 3u3c_A 2lk4_A
Probab=95.20 E-value=0.21 Score=38.09 Aligned_cols=101 Identities=14% Similarity=0.206 Sum_probs=74.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHh-------hcCCCCCcHHHHHHHHHhhhhhHHH
Q psy13626 22 QSEEVVRRTDQVTKRIQELAAHMRSSDKCHSFVPHAERIRIAVSELSA-------IFPQNTNNDLIRHALRSLNTSTVRL 94 (127)
Q Consensus 22 ~~e~Vir~TE~vTr~IqeLl~aaq~~~~~~~fvpcae~I~~AV~el~a-------LFP~~~~~e~vr~~L~~L~~~a~~L 94 (127)
+.|.|...|=.|.|.+-+|=+..+.. +.+.|+.|-..|..+..+|.+ +||... -.+|+-+=+.|+..-..|
T Consensus 20 t~D~VY~at~~VVkaV~~Ls~~v~~a-~~e~Y~~lVK~VGl~LR~Ll~sVd~~~~~lp~s~-~~EIema~k~L~kDM~eL 97 (153)
T 3gm3_A 20 TDDLVYLNVMELVRAVLELKNELAQL-PPEGYVVVVKNVGLTLRKLIGSVDDLLPSLPSSS-RTEIEGTQKLLNKDLAEL 97 (153)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHGGGC-CHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCHHH-HHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHhhhhhc-ChHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHH-HHHHHHHHHHHHHHHHHH
Confidence 45889999999999999999999996 679999999999887766665 555444 367777767776553333
Q ss_pred HHhhhhhH---------hhHHHHHHHHHHHHHhHhhhhh
Q psy13626 95 QAECAQLE---------GSAERVRSCAYNMAKANKQLLT 124 (127)
Q Consensus 95 q~eC~~lq---------~~t~qv~~cAYdIAKAaK~LvT 124 (127)
-..=...| -.-.+....||-+|..+|.|+.
T Consensus 98 Is~MkLAqq~~~TtL~eEyrr~MLsaaH~LA~DaKNLlD 136 (153)
T 3gm3_A 98 INKMRLAQQNAVTSLSEECKRQMLTASHTLAVDAKNLLD 136 (153)
T ss_dssp HHHHHHHHHTTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32221111 1145788999999999999985
No 3
>1k04_A FADK 1, focal adhesion kinase 1; UP-DOWN-UP-DOWN four helical bundle forming A helix-exchange transferase; 1.95A {Homo sapiens} SCOP: a.24.14.1 PDB: 1k05_A 3b71_A 1ow6_A 1ow7_A 1ow8_A 1ktm_A 1qvx_A 1pv3_A 2ra7_A* 1k40_A
Probab=93.36 E-value=0.94 Score=34.71 Aligned_cols=101 Identities=20% Similarity=0.313 Sum_probs=71.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHH-------hhcCCCCCcHHHHHHHHHhhhh----
Q psy13626 22 QSEEVVRRTDQVTKRIQELAAHMRSSDKCHSFVPHAERIRIAVSELS-------AIFPQNTNNDLIRHALRSLNTS---- 90 (127)
Q Consensus 22 ~~e~Vir~TE~vTr~IqeLl~aaq~~~~~~~fvpcae~I~~AV~el~-------aLFP~~~~~e~vr~~L~~L~~~---- 90 (127)
+.|.|...|-.|.|.+-+|=...+.. ..+.|++|-..|..+..+|+ ..||... -.+|.-+-+.|+.-
T Consensus 30 t~D~Vy~at~~VVkaV~~Ls~~v~~a-~~eey~~~VK~VGl~LR~Ll~sVd~~~~~lp~s~-~rEVema~k~L~kDM~eL 107 (162)
T 1k04_A 30 SNDKVYENVTGLVKAVIEMSSKIQPA-PPEEYVPMVKEVGLALRTLLATVDETIPLLPAST-HREIEMAQKLLNSDLGEL 107 (162)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHSCC-CGGGHHHHHHHHHHHHHHHHHHHHHHGGGSCHHH-HHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHhhhhc-ChHHHHHHHHHHHHHHHHHHHhHhhhhhccCHHh-hHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999997 56999999999887766655 5665554 45566665555543
Q ss_pred ---hHHHHHhhhh-h-HhhHHHHHHHHHHHHHhHhhhhh
Q psy13626 91 ---TVRLQAECAQ-L-EGSAERVRSCAYNMAKANKQLLT 124 (127)
Q Consensus 91 ---a~~Lq~eC~~-l-q~~t~qv~~cAYdIAKAaK~LvT 124 (127)
-...+.-|.- + +-.=.++...|+-+|..+|.|+.
T Consensus 108 is~mklaq~~~~TtL~~EyRk~mLsaah~LA~daKNLld 146 (162)
T 1k04_A 108 INKMKLAQQYVMTSLQQEYKKQMLTAAHALAVDAKNLLD 146 (162)
T ss_dssp HHHHHHHHHTTTSSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhccCccHHHHHHHHHHhhhHHHHHhcccHHH
Confidence 2233322211 0 01124678899999999999985
No 4
>1sj8_A Talin 1; structural protein; 2.60A {Mus musculus} SCOP: a.215.1.1 a.216.1.1
Probab=93.30 E-value=1 Score=37.51 Aligned_cols=103 Identities=15% Similarity=0.170 Sum_probs=73.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhhcCCCCC---CccchHHHHHHHHHHHHh-hcCCCC---CcHHHHHHHHHhhhhhHHH
Q psy13626 22 QSEEVVRRTDQVTKRIQELAAHMRSSDKCH---SFVPHAERIRIAVSELSA-IFPQNT---NNDLIRHALRSLNTSTVRL 94 (127)
Q Consensus 22 ~~e~Vir~TE~vTr~IqeLl~aaq~~~~~~---~fvpcae~I~~AV~el~a-LFP~~~---~~e~vr~~L~~L~~~a~~L 94 (127)
..+.+...+..||..|..|+++++... .+ .++.++-+|..+-.++.. |=|.+. -.|.+-++-+....++..|
T Consensus 123 ~~~~Ll~AAk~l~~Ais~Llkaa~~~~-~e~rq~ll~AA~~Vg~as~~~l~~i~e~~~d~~~~e~Li~aAKAVA~ATa~L 201 (308)
T 1sj8_A 123 NGRPLLQAAKGLAGAVSELLRSAQPAS-AEPRQNLLQAAGNVGQASGELLQQIGESDTDPHFQDVLMQLANAVASAAAAL 201 (308)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHCTTC-CSCTHHHHHHHHHHHHHHHHHHHHTTCCCSCTTHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHhCCccc-cchHHHHHHHHHhHhHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHH
Confidence 456799999999999999999998853 22 288899999999887774 332221 3345555555566666666
Q ss_pred HHhh-------hhhHhhHHHHHHHHHHHHHhHhhhhhhc
Q psy13626 95 QAEC-------AQLEGSAERVRSCAYNMAKANKQLLTQF 126 (127)
Q Consensus 95 q~eC-------~~lq~~t~qv~~cAYdIAKAaK~LvT~f 126 (127)
-..+ +++.. =++||..|-++|.+|-|||+.+
T Consensus 202 V~~Ak~Va~~~~d~e~-Q~~lI~AA~~~A~sTsQLVA~s 239 (308)
T 1sj8_A 202 VLKAKSVAQRTEDSGL-QTQVIAAATQCALSTSQLVACT 239 (308)
T ss_dssp HHHHHHHHTSCTTSSS-SHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 5554 44332 4589999999999999999864
No 5
>3t6g_B Breast cancer anti-estrogen resistance protein 1; CDC25-homology domain, GTPase exchange factor, focal-adhesio targeting domain, signaling protein; 2.50A {Homo sapiens}
Probab=92.86 E-value=1 Score=36.27 Aligned_cols=98 Identities=9% Similarity=0.154 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHH---hhcCCCCCcHHHHHHHHHhhhhhHHHHHhhhhh-
Q psy13626 26 VVRRTDQVTKRIQELAAHMRSSDKCHSFVPHAERIRIAVSELS---AIFPQNTNNDLIRHALRSLNTSTVRLQAECAQL- 101 (127)
Q Consensus 26 Vir~TE~vTr~IqeLl~aaq~~~~~~~fvpcae~I~~AV~el~---aLFP~~~~~e~vr~~L~~L~~~a~~Lq~eC~~l- 101 (127)
.......++++|..++...+.+.-+..|+++|-.|..+-.+|+ .-.=+.-...++|.-+...++.-.-+...|...
T Consensus 108 c~s~~~~L~~AIdaF~~sv~~nQPP~iFVahsK~VIlsAHKLVfIGDTL~r~~~~~dvr~~Vl~~sn~Lc~~LK~~VlAT 187 (229)
T 3t6g_B 108 CEANLTTLTNAVDAFFTAVATNQPPKIFVAHSKFVILSAHKLVFIGDTLSRQAKAADVRSQVTHYSNLLCDLLRGIVATT 187 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCchhhHhcCCEEEEEeeeeeeecchHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456778999999999999988888899999999999999998 555555567777776655444433445555321
Q ss_pred ---------HhhHHHHHHHHHHHHHhHhhhh
Q psy13626 102 ---------EGSAERVRSCAYNMAKANKQLL 123 (127)
Q Consensus 102 ---------q~~t~qv~~cAYdIAKAaK~Lv 123 (127)
...+++..+++-+++..|+++=
T Consensus 188 K~AAl~YPS~~AlQeMvd~v~eLs~~Aqqfr 218 (229)
T 3t6g_B 188 KAAALQYPSPSAAQDMVERVKELGHSTQQFR 218 (229)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 1238999999999999998763
No 6
>3dyj_A Talin-1; helix bundles, cytoskeletal protein, integrin-bindin site, IBS2, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane; 1.85A {Mus musculus} PDB: 4dj9_B
Probab=91.64 E-value=1.9 Score=36.23 Aligned_cols=104 Identities=13% Similarity=0.138 Sum_probs=67.8
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHhhcC---CCCC-cHHHHHHH----HHhhhh-
Q psy13626 20 MPQSEEVVRRTDQVTKRIQELAAHMRSSDKCHSFVPHAERIRIAVSELSAIFP---QNTN-NDLIRHAL----RSLNTS- 90 (127)
Q Consensus 20 ~P~~e~Vir~TE~vTr~IqeLl~aaq~~~~~~~fvpcae~I~~AV~el~aLFP---~~~~-~e~vr~~L----~~L~~~- 90 (127)
-..+|+|+|.|.-||..+-.++.+.+.+ .+++.+..|-.-|.+|.+|++--. ..+. ++++|... +....+
T Consensus 208 ~~tpE~li~~ak~vt~atakaVaA~ns~-~qeDii~aan~~r~aV~dll~~~k~aa~~~~~~~e~r~~~~~~~k~~a~~~ 286 (332)
T 3dyj_A 208 TSTPEDFIRMTKGITMATAKAVAAGNSC-RQEDVIATANLSRRAIADMLRACKEAAFHPEVAPDVRLRALHYGRECANGY 286 (332)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999976 579999999999999999987543 1222 44554322 111100
Q ss_pred hHHHHH---hhhhhH-hhHHHHHHHHHHHHHhHhhhhh
Q psy13626 91 TVRLQA---ECAQLE-GSAERVRSCAYNMAKANKQLLT 124 (127)
Q Consensus 91 a~~Lq~---eC~~lq-~~t~qv~~cAYdIAKAaK~LvT 124 (127)
-..|++ -..++. -.=+++-.++-.||.+--.||+
T Consensus 287 ~~LL~~v~~~~~~P~~~~k~~L~~~Sr~VA~aVteLV~ 324 (332)
T 3dyj_A 287 LELLDHVLLTLQKPNPDLKQQLTGHSKRVAGSVTELIQ 324 (332)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011110 001110 1135577777888887777765
No 7
>2jsw_A Talin-1; C-terminal actin binding site, ABS3, thatch domain, cytoskeleton, phosphorylation, structural protein, actin- binding protein; NMR {Mus musculus}
Probab=91.49 E-value=0.9 Score=35.30 Aligned_cols=108 Identities=13% Similarity=0.236 Sum_probs=72.5
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHhhc--------CCCCC--Cc-----------cchHHHHHHHHHHHH----hhc
Q psy13626 17 TTRMPQSEEVVRRTDQVTKRIQELAAHMRS--------SDKCH--SF-----------VPHAERIRIAVSELS----AIF 71 (127)
Q Consensus 17 ~~~~P~~e~Vir~TE~vTr~IqeLl~aaq~--------~~~~~--~f-----------vpcae~I~~AV~el~----aLF 71 (127)
+..+.+-|.+......|+..|..|+.++.. |+... .| +..|..+..+.+-|. ..+
T Consensus 43 ~~~l~v~e~IL~aa~~i~~Ai~~Lv~aA~~aQ~Eiv~~Gr~~~~~~fy~~n~~WtEGLiSAAKaVa~at~~LveaAd~vv 122 (189)
T 2jsw_A 43 DESLNFEEQILEAAKSIAAATSALVKAASAAQRELVAQGKVGAIPANALDDGQWSQGLISAARMVAAATNNLCEAANAAV 122 (189)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556788899999999999999999998876 43212 22 123333444444444 445
Q ss_pred CCCCCcHHHHHHHHHhhhhhHHHHHhhh----hhHhhHHHHHHHHHHHHHhHhhhhh
Q psy13626 72 PQNTNNDLIRHALRSLNTSTVRLQAECA----QLEGSAERVRSCAYNMAKANKQLLT 124 (127)
Q Consensus 72 P~~~~~e~vr~~L~~L~~~a~~Lq~eC~----~lq~~t~qv~~cAYdIAKAaK~LvT 124 (127)
-.....|.+-.+-++..++|.+|.+-|. ......+++-.++-.|-+|++.||.
T Consensus 123 ~g~~~~E~LIvaa~eVAAsTaQLvaAsrVKa~~~S~~q~~L~~Ask~V~~a~~~LV~ 179 (189)
T 2jsw_A 123 QGHASQEKLISSAKQVAASTAQLLVACKVKADQDSEAMKRLQAAGNAVKRASDNLVK 179 (189)
T ss_dssp HTCCCHHHHHHHHHHHHHHHHHHHHHHTTTSCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445677777888888888888887772 2234566777777777777777764
No 8
>2l6f_A Focal adhesion kinase 1, linker1, paxillin, linke paxillin; FAT, FAK, LD2, LD4, fusion protein, chimera protei transferase,cell adhesion; NMR {Gallus gallus} PDB: 2l6g_A 2l6h_A
Probab=88.22 E-value=0.086 Score=42.14 Aligned_cols=101 Identities=20% Similarity=0.298 Sum_probs=65.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHH-------HHHHHHhhcCCCCCcHHHHHH-------HHHhh
Q psy13626 23 SEEVVRRTDQVTKRIQELAAHMRSSDKCHSFVPHAERIRI-------AVSELSAIFPQNTNNDLIRHA-------LRSLN 88 (127)
Q Consensus 23 ~e~Vir~TE~vTr~IqeLl~aaq~~~~~~~fvpcae~I~~-------AV~el~aLFP~~~~~e~vr~~-------L~~L~ 88 (127)
.|.|...|-.|.|.+-+|=+.++.. +++.|+++-..|.. +|.++...||... -.+|.-+ ++.|.
T Consensus 8 nD~VY~att~VVKAV~~LSq~I~~a-~peeYv~lVK~VGl~LR~LL~sVDel~~~Lp~Sa-~rEIEma~KvLnKDM~ELI 85 (215)
T 2l6f_A 8 NDKVYENVTGLVKAVIEMSSKIQPA-PPEEYVPMVKEVGLALRTLLATVDESLPVLPAST-HREIEMAQKLLNSDLAELI 85 (215)
Confidence 4788899999999999999998886 46999999866654 5556667888544 2223333 23333
Q ss_pred hhhHHHHHhhhh-hHhh-HHHHHHHHHHHHHhHhhhhhh
Q psy13626 89 TSTVRLQAECAQ-LEGS-AERVRSCAYNMAKANKQLLTQ 125 (127)
Q Consensus 89 ~~a~~Lq~eC~~-lq~~-t~qv~~cAYdIAKAaK~LvT~ 125 (127)
+.-...|.-|.. ++.. =.++...|+-+|..+|.|+.-
T Consensus 86 saMKLaqq~~~TtL~~EyRK~MLsaaH~LAmdaKNLlDv 124 (215)
T 2l6f_A 86 NKMKLAQQYVMTSLQQEYKKQMLTAAHALAVDAKNLLDV 124 (215)
Confidence 332232322211 1100 246788999999999999863
No 9
>1tr2_A Vinculin isoform 1; actin-binding, cell adhesion; 2.90A {Homo sapiens} PDB: 1st6_A
Probab=86.24 E-value=1.6 Score=40.78 Aligned_cols=103 Identities=16% Similarity=0.269 Sum_probs=69.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhh-cCCCCCCccchHHHHHHHHHHHHhh---cCCCCCcHHHHHH----HHHhhhhhHH
Q psy13626 22 QSEEVVRRTDQVTKRIQELAAHMR-SSDKCHSFVPHAERIRIAVSELSAI---FPQNTNNDLIRHA----LRSLNTSTVR 93 (127)
Q Consensus 22 ~~e~Vir~TE~vTr~IqeLl~aaq-~~~~~~~fvpcae~I~~AV~el~aL---FP~~~~~e~vr~~----L~~L~~~a~~ 93 (127)
..+|+|+.+..++.-.-++-...+ +|+.+.++..||+.|..++.+|..+ |-..+.+..+|.- ++.+..-...
T Consensus 915 ~~ndiI~~AK~ma~~m~~m~~~~~g~~~~~~d~i~~Ak~ia~~~~~l~~~~r~~a~~~~d~~~k~~ll~~~~~i~~~~~Q 994 (1066)
T 1tr2_A 915 KGNDIIAAAKRMALLMAEMSRLVRGGSGTKRALIQCAKDIAKASDEVTRLAKEVAKQCTDKRIRTNLLQVCERIPTISTQ 994 (1066)
T ss_dssp TTCHHHHHHHHHHHHHHTHHHHTSCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTBCBHHHHHHHHHHHTHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhHHhHH
Confidence 356999999999999888878877 3346689999999999999888763 3222224444443 3333333322
Q ss_pred HHHhhh---hh-----------HhhHHHHHHHHHHHHHhHhhhhh
Q psy13626 94 LQAECA---QL-----------EGSAERVRSCAYNMAKANKQLLT 124 (127)
Q Consensus 94 Lq~eC~---~l-----------q~~t~qv~~cAYdIAKAaK~LvT 124 (127)
|+-=+. .+ .-.++++++||=+++++-+++|.
T Consensus 995 L~ils~VKa~~~g~~~~~~~~~~~a~~~Li~~aknLm~aV~~~V~ 1039 (1066)
T 1tr2_A 995 LKILSTVKATMLGRTNISDEESEQATEMLVHNAQNLMQSVKETVR 1039 (1066)
T ss_dssp HHHHHHHHHHTSSCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 332221 11 12378999999999999999985
No 10
>1sj8_A Talin 1; structural protein; 2.60A {Mus musculus} SCOP: a.215.1.1 a.216.1.1
Probab=85.20 E-value=3.7 Score=34.18 Aligned_cols=92 Identities=16% Similarity=0.169 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHhhcC-CCCCCccchHHHHHHHHHHHHhhcCCCCCcH----HHHHHHHHhhhhhHHHHHhhhh---hHh
Q psy13626 32 QVTKRIQELAAHMRSS-DKCHSFVPHAERIRIAVSELSAIFPQNTNND----LIRHALRSLNTSTVRLQAECAQ---LEG 103 (127)
Q Consensus 32 ~vTr~IqeLl~aaq~~-~~~~~fvpcae~I~~AV~el~aLFP~~~~~e----~vr~~L~~L~~~a~~Lq~eC~~---lq~ 103 (127)
.++++++.|-.-+-+. ...+....++..|-.||.+|+. .-.|..+ ++-.+=.....++..+-..+.. -..
T Consensus 105 e~~~~vk~laaL~~d~~~~~~~Ll~AAk~l~~Ais~Llk--aa~~~~~e~rq~ll~AA~~Vg~as~~~l~~i~e~~~d~~ 182 (308)
T 1sj8_A 105 EMSRGVKLLAALLEDEGGNGRPLLQAAKGLAGAVSELLR--SAQPASAEPRQNLLQAAGNVGQASGELLQQIGESDTDPH 182 (308)
T ss_dssp HHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHHHHHHHHH--HHCTTCCSCTHHHHHHHHHHHHHHHHHHHHTTCCCSCTT
T ss_pred HHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHHHH--hCCccccchHHHHHHHHHhHhHHHHHHHHhcCccccchH
Confidence 3445555443333332 2445799999999999999955 2233333 3666666666666655543321 133
Q ss_pred hHHHHHHHHHHHHHhHhhhhhh
Q psy13626 104 SAERVRSCAYNMAKANKQLLTQ 125 (127)
Q Consensus 104 ~t~qv~~cAYdIAKAaK~LvT~ 125 (127)
..+++++.|-.||.|+-.||..
T Consensus 183 ~~e~Li~aAKAVA~ATa~LV~~ 204 (308)
T 1sj8_A 183 FQDVLMQLANAVASAAAALVLK 204 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999863
No 11
>1qkr_A Vinculin, tail domain; actin cytoskeleton, cell adhesion, helical bundle, lipid binding; 1.8A {Gallus gallus} SCOP: a.24.9.1 PDB: 3h2u_A 3h2v_A 1rke_B 3myi_A
Probab=84.97 E-value=4.1 Score=31.61 Aligned_cols=103 Identities=14% Similarity=0.210 Sum_probs=65.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhhc-CCCCCCccchHHHHHHHHHHHHh-------hcCCCCCcHHHHHHHHHhhhhhHH
Q psy13626 22 QSEEVVRRTDQVTKRIQELAAHMRS-SDKCHSFVPHAERIRIAVSELSA-------IFPQNTNNDLIRHALRSLNTSTVR 93 (127)
Q Consensus 22 ~~e~Vir~TE~vTr~IqeLl~aaq~-~~~~~~fvpcae~I~~AV~el~a-------LFP~~~~~e~vr~~L~~L~~~a~~ 93 (127)
...|+|+.+.....-.-++-...++ |+...++..||+.|..+..+|.. --|.......+-..++++..-+..
T Consensus 37 ~~NdII~~Ak~Ma~~m~~M~~ftrG~g~t~~dlI~~Ak~iAe~~~~l~k~ar~iA~qc~D~~~k~~Ll~~~~rI~t~~~Q 116 (188)
T 1qkr_A 37 KGNDIIAAAKRMALLMAEMSRLVRGGSGNKRALIQCAKDIAKASDEVTRLAKEVAKQCTDKRIRTNLLQVCERIPTISTQ 116 (188)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhhHHHHH
Confidence 4556666665555555555555552 23445777888877777655543 335555556666666666666666
Q ss_pred HHHhhh--h-h-----------HhhHHHHHHHHHHHHHhHhhhhh
Q psy13626 94 LQAECA--Q-L-----------EGSAERVRSCAYNMAKANKQLLT 124 (127)
Q Consensus 94 Lq~eC~--~-l-----------q~~t~qv~~cAYdIAKAaK~LvT 124 (127)
|+-=|. . + ...++++|+||=++-.+-+++|.
T Consensus 117 LkIls~VKA~~~g~~~~~~~~~~~a~e~LIq~AkNLM~aV~~tVk 161 (188)
T 1qkr_A 117 LKILSTVKATMLGRTNISDEESEQATEMLVHNAQNLMQSVKETVR 161 (188)
T ss_dssp HHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 666553 1 1 11278999999999999999885
No 12
>1u89_A Talin 1, talin; 4-helix bundle, LEFT-handed, structural protein; NMR {Mus musculus} SCOP: a.216.1.1
Probab=71.04 E-value=29 Score=25.65 Aligned_cols=100 Identities=17% Similarity=0.213 Sum_probs=69.0
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHhhcC----CCCCCccchHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhhhhHHHHH
Q psy13626 21 PQSEEVVRRTDQVTKRIQELAAHMRSS----DKCHSFVPHAERIRIAVSELSAIFPQNTNNDLIRHALRSLNTSTVRLQA 96 (127)
Q Consensus 21 P~~e~Vir~TE~vTr~IqeLl~aaq~~----~~~~~fvpcae~I~~AV~el~aLFP~~~~~e~vr~~L~~L~~~a~~Lq~ 96 (127)
+..-+|..-+..||+.+.+||..++.. ...+.+-.-.+.|-.+-. .||-.-..++++-..-+.|..++.+| .
T Consensus 12 ~~~~~l~~AA~~Vt~aL~dLL~hik~~~~~~~~~~~~~~~~d~Il~~t~---~l~~s~gd~~eMvrqak~Laqat~~L-V 87 (139)
T 1u89_A 12 QLLRGVGAAATAVTQALNELLQHVKAHATGAGPAGRYDQATDTILTVTE---NIFSSMGDAGEMVRQARILAQATSDL-V 87 (139)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHTTSSCCSSSCSCCHHHHHHHHHHHH---HHHHTTTTSHHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhhhHHHHHHHHHH---HHHHhcCCHHHHHHHHHHHHHHHHHH-H
Confidence 556678889999999999999999842 222233333344443333 35666677888888889999888887 4
Q ss_pred hhhhh-------HhhHHHHHHHHHHHHHhHhhhhh
Q psy13626 97 ECAQL-------EGSAERVRSCAYNMAKANKQLLT 124 (127)
Q Consensus 97 eC~~l-------q~~t~qv~~cAYdIAKAaK~LvT 124 (127)
+|-.. .-.-+.+.++|-.||-||-.||-
T Consensus 88 ~~iK~eAe~~~D~~~q~rLL~AAk~lAdATa~mVe 122 (139)
T 1u89_A 88 NAIKADAEGESDLENSRKLLSAAKILADATAKMVE 122 (139)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55221 11156888999999999887773
No 13
>3vf0_A Vinculin, metavinculin; cytoskeletal F-actin binding protein, CEL adhesion-protein binding complex; HET: EPE; 2.54A {Homo sapiens}
Probab=70.00 E-value=31 Score=28.41 Aligned_cols=102 Identities=13% Similarity=0.203 Sum_probs=53.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcC-CCCCCccchHHHHHHHHHHHHhh---cCCCC----CcHHHHHHHHHhhhhhHHH
Q psy13626 23 SEEVVRRTDQVTKRIQELAAHMRSS-DKCHSFVPHAERIRIAVSELSAI---FPQNT----NNDLIRHALRSLNTSTVRL 94 (127)
Q Consensus 23 ~e~Vir~TE~vTr~IqeLl~aaq~~-~~~~~fvpcae~I~~AV~el~aL---FP~~~----~~e~vr~~L~~L~~~a~~L 94 (127)
..|+|+.+..+..-..++-...+++ +.+.+++.||+.|..+..+|..+ |-+.+ ....+-..++++..-...|
T Consensus 133 ~NdII~~AK~MA~mM~~Ms~ftRGg~kTt~DLI~~AK~IAe~g~~l~k~ar~iA~qCtD~r~K~~LL~~lerIpti~~QL 212 (283)
T 3vf0_A 133 GNDIIAAAKRMALLMAEMSRLVRGGSGTKRALIQCAKDIAKASDEVTRLAKEVAKQCTDKRIRTNLLQVCERIPTISTQL 212 (283)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTBCCHHHHHHHHHHHHTHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHhhhhhHHHHH
Confidence 4455555555555555555544431 22345555666555544443322 22222 2333334444444444444
Q ss_pred HHhhh--h------------hHhhHHHHHHHHHHHHHhHhhhhh
Q psy13626 95 QAECA--Q------------LEGSAERVRSCAYNMAKANKQLLT 124 (127)
Q Consensus 95 q~eC~--~------------lq~~t~qv~~cAYdIAKAaK~LvT 124 (127)
+-=|. . ....++++|+||=++-.+-+++|.
T Consensus 213 kIls~VKA~~lg~q~~s~~~~~sa~esLIqnAKNLM~aV~~tVk 256 (283)
T 3vf0_A 213 KILSTVKATMLGRTNISDEESEQATEMLVHNAQNLMQSVKETVR 256 (283)
T ss_dssp HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44331 0 123478999999999999998885
No 14
>1bh9_A TAFII18; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_A*
Probab=67.46 E-value=11 Score=22.79 Aligned_cols=34 Identities=21% Similarity=0.177 Sum_probs=30.8
Q ss_pred hhhccCCCCCChhHHHHHHHHHHHHHHHHHHHhh
Q psy13626 12 CFQSTTTRMPQSEEVVRRTDQVTKRIQELAAHMR 45 (127)
Q Consensus 12 ~~~~~~~~~P~~e~Vir~TE~vTr~IqeLl~aaq 45 (127)
||-.++..-|..|.|..--|.|+.-|++++..|.
T Consensus 10 My~fGD~~~P~~ETv~llEeiV~~~i~~l~~~A~ 43 (45)
T 1bh9_A 10 MYGFGDDQNPYTESVDILEDLVIEFITEMTHKAM 43 (45)
T ss_dssp HHHTTSCSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7888888899999999999999999999998775
No 15
>3ay5_A Cyclin-D1-binding protein 1; dominant-negative helix-loop-helix transcriptional regulator cycle; 2.50A {Homo sapiens}
Probab=66.18 E-value=54 Score=26.97 Aligned_cols=113 Identities=12% Similarity=0.172 Sum_probs=71.3
Q ss_pred hhhccCCCCCChhHHHHHHHHHHHHHHHHHHHhhcCCCCC---Cccch---------HHHHHHHHHHHHhhcCC--CCCc
Q psy13626 12 CFQSTTTRMPQSEEVVRRTDQVTKRIQELAAHMRSSDKCH---SFVPH---------AERIRIAVSELSAIFPQ--NTNN 77 (127)
Q Consensus 12 ~~~~~~~~~P~~e~Vir~TE~vTr~IqeLl~aaq~~~~~~---~fvpc---------ae~I~~AV~el~aLFP~--~~~~ 77 (127)
|+..+++ .|+.+.-...+-.+...+|-++...+.|..+. .|-+- |..|+.-++.|.=+|-+ .|..
T Consensus 4 ~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~l~~~a~~l~~~aTKlsLl~~~~p~Ps~ 82 (360)
T 3ay5_A 4 ATAPAAA-VPTLASPLEQLRHLAEELRLLLPRVRVGEAQETTEEFNREMFWRRLNEAAVTVSREATTLTIVFSQLPLPSP 82 (360)
T ss_dssp -----------CCCHHHHHHHHHHHHHTHHHHHHSCCC---CCSCCHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCCH
T ss_pred ccccccc-CCcccchHHHHHHHHHHHHHHHHHhccCCCCCCcccCCccchHHHHHHHHHHHHhhhHHhhhhccCCCCCCH
Confidence 4444333 45566666667778888999999888876333 46654 67788888999889832 3444
Q ss_pred HHHHHHHHHhhhhhHHHHHhhhhh-----HhhHHHHHHHHHHHHHhHhhhhhh
Q psy13626 78 DLIRHALRSLNTSTVRLQAECAQL-----EGSAERVRSCAYNMAKANKQLLTQ 125 (127)
Q Consensus 78 e~vr~~L~~L~~~a~~Lq~eC~~l-----q~~t~qv~~cAYdIAKAaK~LvT~ 125 (127)
.+++..+..+..+..-+-.-|..+ ...-.+|+..+.+|=+..++|+..
T Consensus 83 ~~~~~~~~~~~~~l~~l~s~~~~~~~~~g~tl~~~i~~~v~~vl~~~~~L~~~ 135 (360)
T 3ay5_A 83 QETQKFCEQVHAAIKAFIAVYYLLPKDQGITLRKLVRGATLDIVDGMAQLMEV 135 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCGGGCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777776655565666433 223667888888888888888754
No 16
>2x0c_A Talin-1; cytoskeleton, cell membrane, actin, synemin, integrin, vincu cell adhesion, cell projection; 2.00A {Mus musculus} PDB: 1zw3_B
Probab=64.28 E-value=43 Score=27.26 Aligned_cols=50 Identities=14% Similarity=0.169 Sum_probs=30.8
Q ss_pred CcHHHHHHHHHhhhhhHHHHHhhhhhH------hhHHHHHHHHHHHHHhHhhhhhh
Q psy13626 76 NNDLIRHALRSLNTSTVRLQAECAQLE------GSAERVRSCAYNMAKANKQLLTQ 125 (127)
Q Consensus 76 ~~e~vr~~L~~L~~~a~~Lq~eC~~lq------~~t~qv~~cAYdIAKAaK~LvT~ 125 (127)
....|=.+-+.+..++..|-.+|.... ..-+|+.++|-+|+-++-.||..
T Consensus 137 ~q~~vL~~A~~va~~t~~L~~~cr~as~~~~n~~~k~ql~~~ak~va~st~~lV~~ 192 (309)
T 2x0c_A 137 TQAQVLSAATIVAKHTSALCNSCRLASARTANPTAKRQFVQSAKEVANSTANLVKT 192 (309)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhHHHHHHHHHHhcCcCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 344466666666667777777774321 12456777777777777666643
No 17
>1xwj_B Talin, metavinculin; cell adhesion/protein binding complex; 2.60A {Gallus gallus} PDB: 1rkc_B
Probab=61.06 E-value=11 Score=20.24 Aligned_cols=22 Identities=14% Similarity=0.466 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhh
Q psy13626 24 EEVVRRTDQVTKRIQELAAHMR 45 (127)
Q Consensus 24 e~Vir~TE~vTr~IqeLl~aaq 45 (127)
-++.++...|+..|.+++.+.|
T Consensus 4 ~el~~~~r~v~ekV~~vlaaLq 25 (26)
T 1xwj_B 4 KELIESARKVSEKVSHVLAALQ 25 (26)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4788999999999999999876
No 18
>3fyq_A CG6831-PA (talin); 5-helix bundle, cell adhesion; 1.95A {Drosophila melanogaster}
Probab=56.16 E-value=53 Score=25.69 Aligned_cols=58 Identities=10% Similarity=0.163 Sum_probs=40.6
Q ss_pred hhHhhhccCCCC--------CChhHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHH
Q psy13626 9 YMECFQSTTTRM--------PQSEEVVRRTDQVTKRIQELAAHMRSSDKCHSFVPHAERIRIAVSELS 68 (127)
Q Consensus 9 ~~~~~~~~~~~~--------P~~e~Vir~TE~vTr~IqeLl~aaq~~~~~~~fvpcae~I~~AV~el~ 68 (127)
++.||--+|.=- .-.|++.+-++.++..++.|+..+.++ ++....-++++...+++|.
T Consensus 24 Tt~lFA~AGtL~~~~~~~F~~~qe~Ilk~Ak~Lvedtk~LV~~a~~t--Qe~LA~aa~~~v~~i~~La 89 (199)
T 3fyq_A 24 TTIMFATAGTLHSDGDGSFADHREHILQTAKALVEDTKVLVTGAAGT--QDQLANAAQNAVSTITQLA 89 (199)
T ss_dssp HHHHHHHTTCCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHTSSC--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHcccCC--HHHHHHHHHHHHHHHHHHH
Confidence 456665554322 334678899999999999999999664 4677777777666666653
No 19
>1h6g_A Alpha-1 catenin; adhesion modulation, cytoskeleton; 2.2A {Homo sapiens} SCOP: a.24.9.1 a.24.9.1 PDB: 1l7c_A
Probab=53.62 E-value=66 Score=24.99 Aligned_cols=90 Identities=7% Similarity=0.110 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHhhcC------CCC-CcHHHHHHHHHhhhh-hHHHHHhhhhh--
Q psy13626 32 QVTKRIQELAAHMRSSDKCHSFVPHAERIRIAVSELSAIFP------QNT-NNDLIRHALRSLNTS-TVRLQAECAQL-- 101 (127)
Q Consensus 32 ~vTr~IqeLl~aaq~~~~~~~fvpcae~I~~AV~el~aLFP------~~~-~~e~vr~~L~~L~~~-a~~Lq~eC~~l-- 101 (127)
.+.+.+...-.+++.+ ..+.++..+-.|+....++....= ++| -.+.|..+.+.|..+ +-++-..+...
T Consensus 142 ~i~~~~~~c~~al~~~-d~~~~~~~a~~i~~~a~rv~~v~k~e~d~~ed~~~~~~v~~a~~~L~~a~~p~mv~~ak~~~~ 220 (256)
T 1h6g_A 142 HILEDVNKCVIALQEK-DVDGLDRTAGAIRGRAARVIHVVTSEMDNYEPGVYTEKVLEATKLLSNTVMPRFTEQVEAAVE 220 (256)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCSSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence 3445555555555554 457777777777777777665543 122 455666777777776 55554444331
Q ss_pred --------HhhHHHHHHHHHHHHHhHhhh
Q psy13626 102 --------EGSAERVRSCAYNMAKANKQL 122 (127)
Q Consensus 102 --------q~~t~qv~~cAYdIAKAaK~L 122 (127)
....++++..+..|-.+++++
T Consensus 221 ~~a~np~d~~~~~~~~~a~~~L~~~v~~v 249 (256)
T 1h6g_A 221 ALSSDPAQPMDENEFIDASRLVYDGIRDI 249 (256)
T ss_dssp HHTSSSCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 122667777777777666654
No 20
>2qsb_A UPF0147 protein TA0600; structural genomics, four-helix bundle, PSI-2, protein structure initiative; HET: MSE; 1.30A {Thermoplasma acidophilum dsm 1728} SCOP: a.29.14.1
Probab=51.99 E-value=49 Score=22.94 Aligned_cols=51 Identities=20% Similarity=0.253 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHhhcCCCCCcHHHHHH
Q psy13626 27 VRRTDQVTKRIQELAAHMRSSDKCHSFVPHAERIRIAVSELSAIFPQNTNNDLIRHA 83 (127)
Q Consensus 27 ir~TE~vTr~IqeLl~aaq~~~~~~~fvpcae~I~~AV~el~aLFP~~~~~e~vr~~ 83 (127)
+|..|...+.+-+.|..+-+ +.-|| ++||.|.++..+..=++..+..||.+
T Consensus 5 ~~~~e~~ik~~~~~L~~I~~----D~sVP--RNIRraA~ea~~~L~~e~~~~~vRAA 55 (89)
T 2qsb_A 5 VRVDQNLFNEVMYLLDELSQ----DITVP--KNVRKVAQDSKAKLSQENESLDLRCA 55 (89)
T ss_dssp CHHHHHHHHHHHHHHHHHHT----CTTSC--HHHHHHHHHHHHHHTCTTSCHHHHHH
T ss_pred ecccHHHHHHHHHHHHHHHc----CCCCC--hHHHHHHHHHHHHHhCCCcchhHHHH
Confidence 45566666555556665554 34566 69999999999999888788888864
No 21
>1l9l_A Granulysin; saposin fold, membrane-lytic, antimicrobial protein; HET: MPO; 0.92A {Homo sapiens} SCOP: a.64.1.1
Probab=48.99 E-value=27 Score=22.51 Aligned_cols=40 Identities=10% Similarity=0.195 Sum_probs=34.3
Q ss_pred HHHHHHHHhhcCCCCCcHHHHHHHHHhhhhhHH-HHHhhhhh
Q psy13626 61 RIAVSELSAIFPQNTNNDLIRHALRSLNTSTVR-LQAECAQL 101 (127)
Q Consensus 61 ~~AV~el~aLFP~~~~~e~vr~~L~~L~~~a~~-Lq~eC~~l 101 (127)
..+|+++-.+. +++..++|+.+|.++=+.--. ++.+|.++
T Consensus 8 ~~~v~~le~~l-~n~Te~~I~~~L~~vC~~l~~~~~~~C~~~ 48 (74)
T 1l9l_A 8 LTIVQKLKKMV-DKPTQRSVSNAATRVCRTGRSRWRDVCRNF 48 (74)
T ss_dssp HHHHHHHHHHC-SSCCHHHHHHHHHHGGGSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHh-cccCHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 46889999999 889999999999988777666 99999775
No 22
>3l39_A Putative PHOU-like phosphate regulatory protein; BT4638, structural genomics, joint center for structural genomics, JCSG; 1.93A {Bacteroides thetaiotaomicron}
Probab=48.46 E-value=44 Score=25.19 Aligned_cols=27 Identities=11% Similarity=-0.029 Sum_probs=19.4
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHhhc
Q psy13626 20 MPQSEEVVRRTDQVTKRIQELAAHMRS 46 (127)
Q Consensus 20 ~P~~e~Vir~TE~vTr~IqeLl~aaq~ 46 (127)
-.+++-+...++.+.++.+.|-..+..
T Consensus 26 ~~ff~ll~~~a~~v~~~a~~L~~~l~~ 52 (227)
T 3l39_A 26 PKFFPLLKQLSDVLSASSVLLVESMEH 52 (227)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 356777777777777777777777664
No 23
>2l10_A Talin-1; helical bundle, cytoskeleton, focal adhesion, structu protein; NMR {Mus musculus}
Probab=47.29 E-value=85 Score=23.34 Aligned_cols=101 Identities=14% Similarity=0.165 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCC-----CCCCccchHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhhhhHHHHHhhh
Q psy13626 25 EVVRRTDQVTKRIQELAAHMRSSD-----KCHSFVPHAERIRIAVSELSAIFPQNTNNDLIRHALRSLNTSTVRLQAECA 99 (127)
Q Consensus 25 ~Vir~TE~vTr~IqeLl~aaq~~~-----~~~~fvpcae~I~~AV~el~aLFP~~~~~e~vr~~L~~L~~~a~~Lq~eC~ 99 (127)
++....+.+....-+|..++++.. ....|+..=++...++.+|+...|.....+.|-..|+.+..++..|...=.
T Consensus 42 eL~~aA~~Ln~A~~~vv~aargsp~~La~as~~f~~~~~~l~~ag~~mag~~~~~~~r~~iv~~L~~vs~~s~~LL~~ak 121 (158)
T 2l10_A 42 RLNEAAAGLNQAATELVQASRGTPQDLARASGRFGQDFSTFLEAGVEMAGQAPSQEDRAQVVSNLKGISMSSSKLLLAAK 121 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 565656777788888888876431 112455555556667778888888666667777889988888887764432
Q ss_pred h----h--HhhHHHHHHHHHHHHHhHhhhhhh
Q psy13626 100 Q----L--EGSAERVRSCAYNMAKANKQLLTQ 125 (127)
Q Consensus 100 ~----l--q~~t~qv~~cAYdIAKAaK~LvT~ 125 (127)
. + ...-+++-.+|-.|.-+..+||+.
T Consensus 122 ~~~~dp~~pn~~~~L~sAaR~VtesIN~Lv~~ 153 (158)
T 2l10_A 122 ALSTDPASPNLKSQLAAAARAVTDSINQLITM 153 (158)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2 223788888998898899999875
No 24
>4f7g_B Talin-1; alpha-helix bundle, integrin activation, cell adhesion; 2.05A {Mus musculus} PDB: 2kbb_A 2kgx_A
Probab=46.19 E-value=62 Score=25.40 Aligned_cols=45 Identities=16% Similarity=0.202 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHhhcCC
Q psy13626 27 VRRTDQVTKRIQELAAHMRSSDKCHSFVPHAERIRIAVSELSAIFPQ 73 (127)
Q Consensus 27 ir~TE~vTr~IqeLl~aaq~~~~~~~fvpcae~I~~AV~el~aLFP~ 73 (127)
....|++...-|||...+..- ..+....+|++..+|+.|..+||+
T Consensus 65 ~~~qeq~~~~~~eL~~~i~~l--~~AAk~~~e~LG~av~~~a~~~ep 109 (216)
T 4f7g_B 65 EALHTQMLTAVQEISHLIEPL--ASAARAEASQLGHKVSQMAQYFEP 109 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HHHHHHCHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHH--HHhhhcCHHHHhHHHHHHHHHhHH
Confidence 344455555544444444431 233444589999999999999953
No 25
>3dyj_A Talin-1; helix bundles, cytoskeletal protein, integrin-bindin site, IBS2, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane; 1.85A {Mus musculus} PDB: 4dj9_B
Probab=43.70 E-value=1.4e+02 Score=24.84 Aligned_cols=101 Identities=14% Similarity=0.170 Sum_probs=51.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhhcCCCCCC-------ccchHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhhhhHHH
Q psy13626 22 QSEEVVRRTDQVTKRIQELAAHMRSSDKCHS-------FVPHAERIRIAVSELSAIFPQNTNNDLIRHALRSLNTSTVRL 94 (127)
Q Consensus 22 ~~e~Vir~TE~vTr~IqeLl~aaq~~~~~~~-------fvpcae~I~~AV~el~aLFP~~~~~e~vr~~L~~L~~~a~~L 94 (127)
+.-.|+-.+.-|....++|+.+...-..... .-..|.-...+|+.|+... ...+++-.--.|.|....+.+
T Consensus 115 tQv~lLna~kdVa~al~~Li~atK~A~G~~~~dpa~~~Lk~aAk~mv~nV~sLlktV--k~vede~~rG~RaLEaai~~I 192 (332)
T 3dyj_A 115 TQVVLINAVKDVAKALGDLISATKAAAGKVGDDPAVWQLKNSAKVMVTNVTSLLKTV--KAVEDEATKGTRALEATTEHI 192 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTCCTTCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHHHHHHHHHHHH--HhhhccccchhHHHHHHHHHH
Confidence 3345666667777777777766655221111 1123333555555555532 001223334455556666666
Q ss_pred HHhhhhhH--------hhHHHHHHHHHHHHHhHhhhhh
Q psy13626 95 QAECAQLE--------GSAERVRSCAYNMAKANKQLLT 124 (127)
Q Consensus 95 q~eC~~lq--------~~t~qv~~cAYdIAKAaK~LvT 124 (127)
..|+..+. ..-+++++++-.|++|+..+|.
T Consensus 193 ~~el~~~~s~~~p~~~~tpE~li~~ak~vt~atakaVa 230 (332)
T 3dyj_A 193 RQELAVFCSPEPPAKTSTPEDFIRMTKGITMATAKAVA 230 (332)
T ss_dssp HHHHHHHHSSSCCSSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 66653321 1156666666666666665554
No 26
>1qsd_A Protein (beta-tubulin binding post-chaperonin cofactor); four-helix-bundle, chaperone; 2.20A {Saccharomyces cerevisiae} SCOP: a.7.5.1
Probab=43.43 E-value=16 Score=25.64 Aligned_cols=43 Identities=14% Similarity=0.158 Sum_probs=33.9
Q ss_pred CccchHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhhhhHHH
Q psy13626 52 SFVPHAERIRIAVSELSAIFPQNTNNDLIRHALRSLNTSTVRL 94 (127)
Q Consensus 52 ~fvpcae~I~~AV~el~aLFP~~~~~e~vr~~L~~L~~~a~~L 94 (127)
-+++|-.||..|+.+|-.+....-.++++..+-..|..+...|
T Consensus 61 mipd~~~Rl~~a~~~L~~~l~~~~~~ee~~~Ake~l~~a~~~~ 103 (106)
T 1qsd_A 61 LLPTLYEKIREFKEDLEQFLKTYQGTEDVSDARSAITSAQELL 103 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCSSSCCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhh
Confidence 5788999999999999999976667788777777776555443
No 27
>1qkr_A Vinculin, tail domain; actin cytoskeleton, cell adhesion, helical bundle, lipid binding; 1.8A {Gallus gallus} SCOP: a.24.9.1 PDB: 3h2u_A 3h2v_A 1rke_B 3myi_A
Probab=43.27 E-value=39 Score=26.06 Aligned_cols=35 Identities=9% Similarity=0.134 Sum_probs=28.5
Q ss_pred Hhhhcc-CCCCCChhHHHHHHHHHHHHHHHHHHHhhc
Q psy13626 11 ECFQST-TTRMPQSEEVVRRTDQVTKRIQELAAHMRS 46 (127)
Q Consensus 11 ~~~~~~-~~~~P~~e~Vir~TE~vTr~IqeLl~aaq~ 46 (127)
+||+.+ |.+ .+..|+|.+.+.|.....+|.+-++.
T Consensus 54 ~M~~ftrG~g-~t~~dlI~~Ak~iAe~~~~l~k~ar~ 89 (188)
T 1qkr_A 54 EMSRLVRGGS-GNKRALIQCAKDIAKASDEVTRLAKE 89 (188)
T ss_dssp HHHHHTTSCG-GGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCC-CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455544 445 89999999999999999999888876
No 28
>2fb5_A Hypothetical membrane spanning protein; structural genomics, membrane protein, PSI, protein structur initiative; 1.99A {Bacillus cereus} SCOP: d.320.1.1
Probab=42.10 E-value=1.2e+02 Score=23.68 Aligned_cols=88 Identities=11% Similarity=0.142 Sum_probs=58.4
Q ss_pred chhHhhhccCCCCCChhHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHh
Q psy13626 8 NYMECFQSTTTRMPQSEEVVRRTDQVTKRIQELAAHMRSSDKCHSFVPHAERIRIAVSELSAIFPQNTNNDLIRHALRSL 87 (127)
Q Consensus 8 ~~~~~~~~~~~~~P~~e~Vir~TE~vTr~IqeLl~aaq~~~~~~~fvpcae~I~~AV~el~aLFP~~~~~e~vr~~L~~L 87 (127)
|.|.-|++. -|..+++.+.-++|+..+++..+.+.+.. .-...==+.|+..+.++-++
T Consensus 3 ~~m~~~~~~---~~~k~~~~~~l~~i~~~~~~~~~~~~~~~--~c~l~~~~~~~~~~~~~~~~----------------- 60 (205)
T 2fb5_A 3 NAMHEWGLS---EELKIQTKQMIEIAEKELSIMRNAIDKED--ECILCKMEDIHHMLANVQTL----------------- 60 (205)
T ss_dssp CHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHTTCTT--CCGGGGHHHHHHHHHHHHHH-----------------
T ss_pred ccccccccC---hHHHHHHHHHHHHHHHHHHHHHHHhccCC--ceehHhhhhHHHHHHHHHHH-----------------
Confidence 566666665 68899999999999999999999998742 22223346666666665442
Q ss_pred hhhhHHHHHhhhhhHhhHHHHHHHHHHHHHh
Q psy13626 88 NTSTVRLQAECAQLEGSAERVRSCAYNMAKA 118 (127)
Q Consensus 88 ~~~a~~Lq~eC~~lq~~t~qv~~cAYdIAKA 118 (127)
.+++-|+.--..-+..+++++.++..++|.
T Consensus 61 -~~~y~~~~~~aPgt~~i~~l~~a~~~ls~~ 90 (205)
T 2fb5_A 61 -AATYYIQAYLSPYTESSSFITTAIQHLSAR 90 (205)
T ss_dssp -HHHHHHHHHHTTTCSCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhCCCChHHHHHHHHHHHHhcc
Confidence 122444444333445577788888777774
No 29
>2l7a_A Talin-1; vinculin, bundle, focal adhesion, integrin, cell ADHE; NMR {Mus musculus}
Probab=40.16 E-value=1e+02 Score=22.27 Aligned_cols=73 Identities=18% Similarity=0.205 Sum_probs=44.3
Q ss_pred CCccchHHHHHHHHHHHHhhcC------CCC-CcHHHHHHHHHhhhhhHHHHHhhhhhH------hhHHHHHHHHHHHHH
Q psy13626 51 HSFVPHAERIRIAVSELSAIFP------QNT-NNDLIRHALRSLNTSTVRLQAECAQLE------GSAERVRSCAYNMAK 117 (127)
Q Consensus 51 ~~fvpcae~I~~AV~el~aLFP------~~~-~~e~vr~~L~~L~~~a~~Lq~eC~~lq------~~t~qv~~cAYdIAK 117 (127)
+.-+..+..|-.+-.+|+.-+= ++| .-+.+..+-+.|..++.++-..|.... ...+.++++|.++..
T Consensus 40 ~~Mv~~ak~iAr~a~~Li~~~K~eAd~seDp~~~~rLl~AAk~La~At~~MVeaAK~~A~NP~d~~~q~~Lr~Aae~L~~ 119 (131)
T 2l7a_A 40 GEMVRQARILAQATSDLVNAIKADAEGESDLENSRKLLSAAKILADATAKMVEAAKGAAAHPDSEEQQQRLREAAEGLRM 119 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 4555555555544444443331 223 345566677778888888877774432 226788888888888
Q ss_pred hHhhhh
Q psy13626 118 ANKQLL 123 (127)
Q Consensus 118 AaK~Lv 123 (127)
++++.-
T Consensus 120 at~~~~ 125 (131)
T 2l7a_A 120 ATNAAA 125 (131)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877653
No 30
>1r0d_A HIP1-related, huntingtin interacting protein 12, HIP 12; endocytosis, actin-binding, structural genomics, PSI, protein structure initiative; 1.90A {Homo sapiens} SCOP: a.216.1.1
Probab=35.37 E-value=1.6e+02 Score=22.96 Aligned_cols=79 Identities=14% Similarity=0.170 Sum_probs=45.3
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHhhc--------CCCCCCcc-------chHHH-------HHHHHHHHH----hhcCC
Q psy13626 20 MPQSEEVVRRTDQVTKRIQELAAHMRS--------SDKCHSFV-------PHAER-------IRIAVSELS----AIFPQ 73 (127)
Q Consensus 20 ~P~~e~Vir~TE~vTr~IqeLl~aaq~--------~~~~~~fv-------pcae~-------I~~AV~el~----aLFP~ 73 (127)
+..-|.+......|+..|..|+.++.. |+...+.. .++|= +..+.+.|. .++-.
T Consensus 52 l~v~e~IL~aa~~i~~Ai~~LV~aA~~aQ~EiV~~Gr~~~s~~~fy~kn~~WtEGLISAAkaVa~at~~LveaAd~vv~g 131 (206)
T 1r0d_A 52 LEVNERILNSCTDLMKAIRLLVTTSTSLQKEIVESGRGAATQQEFYAKNSRWTEGLISASKAVGWGATQLVEAADKVVLH 131 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 456677888888999999999988765 32111111 12222 222222222 23434
Q ss_pred CCCcHHHHHHHHHhhhhhHHHHHhh
Q psy13626 74 NTNNDLIRHALRSLNTSTVRLQAEC 98 (127)
Q Consensus 74 ~~~~e~vr~~L~~L~~~a~~Lq~eC 98 (127)
....|.+-.+-+...++|.+|.+-|
T Consensus 132 ~~~~E~LIvaa~eVAAsTAQLvaAs 156 (206)
T 1r0d_A 132 TGKYEELIVCSHEIAASTAQLVAAS 156 (206)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666677777777777666
No 31
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=34.88 E-value=1.7e+02 Score=23.14 Aligned_cols=18 Identities=22% Similarity=0.348 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHhhc
Q psy13626 29 RTDQVTKRIQELAAHMRS 46 (127)
Q Consensus 29 ~TE~vTr~IqeLl~aaq~ 46 (127)
+|..-|+.|+.++...+.
T Consensus 196 ~t~~at~~I~~~i~~~~~ 213 (341)
T 3zx6_A 196 RSAQAAREIKSLIEDSVG 213 (341)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555666666655443
No 32
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=33.22 E-value=38 Score=20.69 Aligned_cols=27 Identities=22% Similarity=0.260 Sum_probs=21.5
Q ss_pred HHHHHHHHhhcCCCCCcHHHHHHHHHhh
Q psy13626 61 RIAVSELSAIFPQNTNNDLIRHALRSLN 88 (127)
Q Consensus 61 ~~AV~el~aLFP~~~~~e~vr~~L~~L~ 88 (127)
-.-|.-|...||.-. .++||++|+.=+
T Consensus 5 e~~v~~L~EMFP~~~-~~~ik~~L~~~~ 31 (49)
T 1otr_A 5 ESKLSILMDMFPAIS-KSKLQVHLLENN 31 (49)
T ss_dssp HHHHHHHHHHCSSSC-HHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCCC-HHHHHHHHHHcC
Confidence 356788999999877 889999987644
No 33
>2l7a_A Talin-1; vinculin, bundle, focal adhesion, integrin, cell ADHE; NMR {Mus musculus}
Probab=32.54 E-value=57 Score=23.69 Aligned_cols=70 Identities=14% Similarity=0.268 Sum_probs=46.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhhc-------CCCCCCccchHHHHHHHHHHHH---hhcCCCCCcH----HHHHHHHHh
Q psy13626 22 QSEEVVRRTDQVTKRIQELAAHMRS-------SDKCHSFVPHAERIRIAVSELS---AIFPQNTNND----LIRHALRSL 87 (127)
Q Consensus 22 ~~e~Vir~TE~vTr~IqeLl~aaq~-------~~~~~~fvpcae~I~~AV~el~---aLFP~~~~~e----~vr~~L~~L 87 (127)
.++++++-+..|++.-..|+..++. +..++....++..+..|+..|+ ..+-++|+++ .+|.+-..|
T Consensus 38 ~p~~Mv~~ak~iAr~a~~Li~~~K~eAd~seDp~~~~rLl~AAk~La~At~~MVeaAK~~A~NP~d~~~q~~Lr~Aae~L 117 (131)
T 2l7a_A 38 DAGEMVRQARILAQATSDLVNAIKADAEGESDLENSRKLLSAAKILADATAKMVEAAKGAAAHPDSEEQQQRLREAAEGL 117 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 3589999999999999999988874 1123456678888888888776 3444555443 444444444
Q ss_pred hhhh
Q psy13626 88 NTST 91 (127)
Q Consensus 88 ~~~a 91 (127)
...+
T Consensus 118 ~~at 121 (131)
T 2l7a_A 118 RMAT 121 (131)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 34
>2jx0_A ARF GTPase-activating protein GIT1; paxillin binding domain homologue, ANK repeat, cytoplasm, GTPase activation, metal-binding; NMR {Rattus norvegicus}
Probab=32.25 E-value=70 Score=23.67 Aligned_cols=57 Identities=16% Similarity=0.146 Sum_probs=33.9
Q ss_pred CCCCChhHHHHHHHHHHHHH---HHHHHHhhcCCC---------CCCccchHHHHHHHHHHHHhhcCCC
Q psy13626 18 TRMPQSEEVVRRTDQVTKRI---QELAAHMRSSDK---------CHSFVPHAERIRIAVSELSAIFPQN 74 (127)
Q Consensus 18 ~~~P~~e~Vir~TE~vTr~I---qeLl~aaq~~~~---------~~~fvpcae~I~~AV~el~aLFP~~ 74 (127)
|..|.+|+|...-.+++..- |-=+...|.+.. ......||+.|..|-..|+.+|-++
T Consensus 64 p~~p~~etvr~sL~~L~~~a~~Lq~EC~~~q~~~~~~~~~iq~~tqqVi~cAYdIAkAaK~Lvt~~~~~ 132 (135)
T 2jx0_A 64 PKRPALEPVRSSLRLLNASAYRLQSECRKTVPPEPGAPVDFQLLTQQVIQCAYDIAKAAKQLVTITTRE 132 (135)
T ss_dssp CSSBCCHHHHHHHHHHHHHHHHHHHHHHSCCCSCTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHccCCCcccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44466777766666665543 333333333210 1135678888888888888887544
No 35
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=31.59 E-value=61 Score=21.40 Aligned_cols=39 Identities=10% Similarity=0.137 Sum_probs=30.8
Q ss_pred cchHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhhhhHH
Q psy13626 54 VPHAERIRIAVSELSAIFPQNTNNDLIRHALRSLNTSTVR 93 (127)
Q Consensus 54 vpcae~I~~AV~el~aLFP~~~~~e~vr~~L~~L~~~a~~ 93 (127)
-.++-.+...|+.+..|||... ..-|+.+|+.-+.+.++
T Consensus 7 ~~~~~~l~s~I~qV~DLfPdLG-~gfi~~~L~~y~~nvE~ 45 (71)
T 2di0_A 7 GMCGVELDSLISQVKDLLPDLG-EGFILACLEYYHYDPEQ 45 (71)
T ss_dssp CCSSHHHHHHHHHHHHHCCSSC-HHHHHHHHHHTTTCHHH
T ss_pred CCcHHHHHHHHHHHHHHcccCC-HHHHHHHHHHhCCCHHH
Confidence 3467788899999999999977 78888888877655443
No 36
>2olt_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 2.00A {Shewanella oneidensis} PDB: 2iiu_A*
Probab=30.67 E-value=53 Score=24.18 Aligned_cols=36 Identities=14% Similarity=0.211 Sum_probs=17.7
Q ss_pred CCchhHhhhccCCCCCChhHHHHHHHHHHHHHHHHHHHhhc
Q psy13626 6 QNNYMECFQSTTTRMPQSEEVVRRTDQVTKRIQELAAHMRS 46 (127)
Q Consensus 6 ~~~~~~~~~~~~~~~P~~e~Vir~TE~vTr~IqeLl~aaq~ 46 (127)
-|+....|. .+| ++-+....+.+..+...|...+..
T Consensus 4 ~~~~~~lf~-~s~----f~~l~~~a~~~~~~a~~L~~~~~~ 39 (227)
T 2olt_A 4 VNSILGVFA-KSP----IKPLQEHMDKVYDCASLLVPFFEA 39 (227)
T ss_dssp -----------CT----THHHHHHHHHHHHHHHTHHHHHHH
T ss_pred cchHHHHhc-cCh----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566663 333 667777777777777776666653
No 37
>2olt_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 2.00A {Shewanella oneidensis} PDB: 2iiu_A*
Probab=27.78 E-value=1.8e+02 Score=21.23 Aligned_cols=20 Identities=10% Similarity=0.071 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHhHhhhhh
Q psy13626 105 AERVRSCAYNMAKANKQLLT 124 (127)
Q Consensus 105 t~qv~~cAYdIAKAaK~LvT 124 (127)
++.+.+.+-+||..-..++.
T Consensus 206 lE~i~D~~e~vA~~l~~i~~ 225 (227)
T 2olt_A 206 VGGLADLAERVGSRLELMLA 225 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 88899999999988776654
No 38
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.00 E-value=57 Score=21.05 Aligned_cols=28 Identities=25% Similarity=0.475 Sum_probs=21.7
Q ss_pred HHHHHHHHhhcCCCCCcHHHHHHHHHhhh
Q psy13626 61 RIAVSELSAIFPQNTNNDLIRHALRSLNT 89 (127)
Q Consensus 61 ~~AV~el~aLFP~~~~~e~vr~~L~~L~~ 89 (127)
..+|..|.+.||.-. .+.|++.|..-+.
T Consensus 19 ~~~v~~L~~MFP~lD-~~vI~~vL~a~~G 46 (67)
T 2dhy_A 19 NQAMDDFKTMFPNMD-YDIIECVLRANSG 46 (67)
T ss_dssp HHHHHHHHHHCSSSC-HHHHHHHHHHHTS
T ss_pred HHHHHHHHHHCCCCC-HHHHHHHHHHcCC
Confidence 356888999999876 8888888876553
No 39
>1r0d_A HIP1-related, huntingtin interacting protein 12, HIP 12; endocytosis, actin-binding, structural genomics, PSI, protein structure initiative; 1.90A {Homo sapiens} SCOP: a.216.1.1
Probab=26.40 E-value=2.3e+02 Score=22.02 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHHhHhhhhh
Q psy13626 104 SAERVRSCAYNMAKANKQLLT 124 (127)
Q Consensus 104 ~t~qv~~cAYdIAKAaK~LvT 124 (127)
.-+++|-||-+||.+|-|||.
T Consensus 134 ~~E~LIvaa~eVAAsTAQLva 154 (206)
T 1r0d_A 134 KYEELIVCSHEIAASTAQLVA 154 (206)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 378899999999999999984
No 40
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A*
Probab=24.67 E-value=2.7e+02 Score=22.29 Aligned_cols=92 Identities=9% Similarity=0.077 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHhhcC--CCCCCccchHHHHHHHHHHHHhhcCCCC--CcHHHHHHHHHhhhhhHHHHHhhhhh----Hh
Q psy13626 32 QVTKRIQELAAHMRSS--DKCHSFVPHAERIRIAVSELSAIFPQNT--NNDLIRHALRSLNTSTVRLQAECAQL----EG 103 (127)
Q Consensus 32 ~vTr~IqeLl~aaq~~--~~~~~fvpcae~I~~AV~el~aLFP~~~--~~e~vr~~L~~L~~~a~~Lq~eC~~l----q~ 103 (127)
.+-..++.|...+.+- ++...+...-.++..+..+|..-|.-+. ....+..+|..|......+..-..+- ..
T Consensus 179 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~L~~al~~l~~~~~~i~~l~~~qa~~d~~ 258 (366)
T 3dyt_A 179 AMDDGVKELLTVGQEHWKRCTGPLPKEYQKIGKALQSLATVFSSSGYQGETDLNDAITEAGKTYEEIASLVAEQPKKDLH 258 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHHHHHHHSGGGTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3334445555444331 1123455667888999999998875443 36789999999998888887776432 11
Q ss_pred hHHHHHHHHHHHHHhHhhhh
Q psy13626 104 SAERVRSCAYNMAKANKQLL 123 (127)
Q Consensus 104 ~t~qv~~cAYdIAKAaK~Lv 123 (127)
.+-+...--.++..|.|.++
T Consensus 259 ~l~E~L~~Y~~~l~avKd~l 278 (366)
T 3dyt_A 259 FLMECNHEYKGFLGCFPDII 278 (366)
T ss_dssp HHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 23333444444555666654
No 41
>2gs4_A Protein YCIF; stress proteins, rubrerythrin, metal binding protein; 2.00A {Escherichia coli} SCOP: a.25.1.4
Probab=24.24 E-value=44 Score=24.69 Aligned_cols=68 Identities=15% Similarity=0.229 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHhhcCC--CCCcHHHH-HHHHHhhhhhHHHHHhh
Q psy13626 31 DQVTKRIQELAAHMRSSDKCHSFVPHAERIRIAVSELSAIFPQ--NTNNDLIR-HALRSLNTSTVRLQAEC 98 (127)
Q Consensus 31 E~vTr~IqeLl~aaq~~~~~~~fvpcae~I~~AV~el~aLFP~--~~~~e~vr-~~L~~L~~~a~~Lq~eC 98 (127)
.++.+....+..++.++..++.|..|-+-++.=|.+|-.+|=. +..+..++ .+...|-....-+-.++
T Consensus 22 ~q~~~al~~~~~~a~~p~Lk~~l~~h~~eT~~qi~rLe~i~~~~lg~~~~~~~c~am~gli~e~~~~~~~~ 92 (166)
T 2gs4_A 22 KQLTRALAKLARATSNEKLSQAFHAHLEETHGQIERIDQVVESESNLKIKRMKCVAMEGLIEEANEVIEST 92 (166)
T ss_dssp HHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCCCCCCHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHHhcc
Confidence 4556666666666666555566666666666666666666644 22333334 44444444444444444
No 42
>1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle, signaling protein; 2.60A {Escherichia coli} SCOP: h.4.5.1
Probab=24.19 E-value=2.3e+02 Score=21.33 Aligned_cols=17 Identities=24% Similarity=0.360 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy13626 29 RTDQVTKRIQELAAHMR 45 (127)
Q Consensus 29 ~TE~vTr~IqeLl~aaq 45 (127)
+|..-|+.|+.++....
T Consensus 116 ~t~~at~~I~~~i~~~~ 132 (227)
T 1qu7_A 116 RSAQAAREIKSLIEDSV 132 (227)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555666666665544
No 43
>2qzg_A Conserved uncharacterized archaeal protein; unknown function protein, structu genomics, PSI-2, protein structure initiative; 2.09A {Methanococcus maripaludis S2} SCOP: a.29.14.1
Probab=23.88 E-value=1.9e+02 Score=20.15 Aligned_cols=30 Identities=23% Similarity=0.372 Sum_probs=24.5
Q ss_pred CccchHHHHHHHHHHHHhhcCCCCCcHHHHHH
Q psy13626 52 SFVPHAERIRIAVSELSAIFPQNTNNDLIRHA 83 (127)
Q Consensus 52 ~fvpcae~I~~AV~el~aLFP~~~~~e~vr~~ 83 (127)
.-|| ++||.|.++.....=++..+..||.+
T Consensus 30 ~sVP--RNIRraA~ea~~~L~~e~~~~~vRAA 59 (94)
T 2qzg_A 30 TTVP--RNIRAAADNAKNALHNEEQELIVRSA 59 (94)
T ss_dssp TTSC--HHHHHHHHHHHHHTTCTTSCHHHHHH
T ss_pred CCCC--hHHHHHHHHHHHHHhCCCcchhHHHH
Confidence 4455 69999999999999887788888864
No 44
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens}
Probab=23.46 E-value=3e+02 Score=22.38 Aligned_cols=72 Identities=10% Similarity=0.063 Sum_probs=47.2
Q ss_pred ccchHHHHHHHHHHHHhhcCCCC--CcHHHHHHHHHhhhhhHHHHHhhhhh----HhhHHHHHHHHHHHHHhHhhhhh
Q psy13626 53 FVPHAERIRIAVSELSAIFPQNT--NNDLIRHALRSLNTSTVRLQAECAQL----EGSAERVRSCAYNMAKANKQLLT 124 (127)
Q Consensus 53 fvpcae~I~~AV~el~aLFP~~~--~~e~vr~~L~~L~~~a~~Lq~eC~~l----q~~t~qv~~cAYdIAKAaK~LvT 124 (127)
+...-.++..+..+|..-|+-+. ....+..+|..|......++.-+.+- ...+-+...--.++..+.|.+++
T Consensus 222 ~~~e~~~l~~~l~~l~~~~~~~~~~~~~~Ls~aL~~l~~~~e~i~~l~~~Qa~~d~~~L~E~L~~Y~~ll~s~Kdll~ 299 (386)
T 4akv_A 222 FRKEFQKLGSAFQAISHSFQMDPPFCSEALNSAISHTGRTYEAIGEMFAEQPKNDLFQMLDTLSLYQGLLSNFPDIIH 299 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSGGGSCHHHHHHHHHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344567888889998776554 56789999999998888887666331 11234444444455566666654
No 45
>3ay5_A Cyclin-D1-binding protein 1; dominant-negative helix-loop-helix transcriptional regulator cycle; 2.50A {Homo sapiens}
Probab=22.82 E-value=3.1e+02 Score=22.35 Aligned_cols=73 Identities=21% Similarity=0.275 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCC---CCCCccchHHHHHHHHHHHH-hhcCCCCCcHHHHHHHHHhhhhhHHHHHhhh
Q psy13626 26 VVRRTDQVTKRIQELAAHMRSSD---KCHSFVPHAERIRIAVSELS-AIFPQNTNNDLIRHALRSLNTSTVRLQAECA 99 (127)
Q Consensus 26 Vir~TE~vTr~IqeLl~aaq~~~---~~~~fvpcae~I~~AV~el~-aLFP~~~~~e~vr~~L~~L~~~a~~Lq~eC~ 99 (127)
+++.+....|.|+.+++.--... .-++-+.++..|...|.||+ +||| ....++|+..+..|.+....+.....
T Consensus 247 l~~a~~~~lk~i~~~ik~~~~~~~v~~LD~L~~~~~~i~~~VDeLa~slYP-p~d~~~v~~~~~~L~~~~~~~~~~~~ 323 (360)
T 3ay5_A 247 LVRASKACLKKIRMLVAENGKKDQVAQLDDIVDISDEISPSVDDLALSIYP-PMSHLTVRINSAKLVSVLKKALEITK 323 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHSS-SCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCchhHHHHHHHHHHHHHHhHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555554421110 11345567888888888886 5886 23578999999999999888877764
No 46
>4g3o_A E3 ubiquitin-protein ligase AMFR; all-helical structure, BAG6; 1.60A {Homo sapiens}
Probab=22.05 E-value=1.3e+02 Score=19.20 Aligned_cols=27 Identities=19% Similarity=0.416 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhhcCCCCCcHHHHHHHHH
Q psy13626 59 RIRIAVSELSAIFPQNTNNDLIRHALRS 86 (127)
Q Consensus 59 ~I~~AV~el~aLFP~~~~~e~vr~~L~~ 86 (127)
.+...|..+.++||+-| .+.|++-|.+
T Consensus 16 ql~~Mve~V~~mFPqv~-~~~I~~DL~r 42 (58)
T 4g3o_A 16 QLNAMAHQIQEMFPQVP-YHLVLQDLQL 42 (58)
T ss_dssp HHHHHHHHHHHHCTTSC-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCC-HHHHHHHHHH
Confidence 45667888999999998 7777777754
No 47
>3lyg_A NTF2-like protein of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE GOL; 1.61A {Colwellia psychrerythraea}
Probab=21.45 E-value=1.2e+02 Score=22.11 Aligned_cols=42 Identities=17% Similarity=0.212 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhhcCC-----------------CCCCccchHHHHHHHHHHHHhhcCCCC
Q psy13626 34 TKRIQELAAHMRSSD-----------------KCHSFVPHAERIRIAVSELSAIFPQNT 75 (127)
Q Consensus 34 Tr~IqeLl~aaq~~~-----------------~~~~fvpcae~I~~AV~el~aLFP~~~ 75 (127)
++-+|.||++++.+. .+.....--+.+|.|...|.+.+|+..
T Consensus 5 ~~iVqrlW~al~AgD~D~l~adyaeDaV~i~P~sa~vl~GR~~~r~a~~~L~~~lP~g~ 63 (120)
T 3lyg_A 5 ANIVQRGWEALGAGDFDTLVTDYVEKMIFIMPGQADVLKGRQAFRSALDNLGEILPPGF 63 (120)
T ss_dssp HHHHHHHHHHHHHTCHHHHGGGEEEEEEEECSSTTCEEESHHHHHHHHTTHHHHSCTTC
T ss_pred HHHHHHHHHHHhcCCHHHHHHhcccCeEEEccCccceeecHHHHHHHHHHHHhhCCCCc
Confidence 456788999988732 235667788999999999999999987
No 48
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=21.25 E-value=2.3e+02 Score=21.41 Aligned_cols=40 Identities=10% Similarity=0.187 Sum_probs=26.7
Q ss_pred CCccchHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhhh
Q psy13626 51 HSFVPHAERIRIAVSELSAIFPQNTNNDLIRHALRSLNTS 90 (127)
Q Consensus 51 ~~fvpcae~I~~AV~el~aLFP~~~~~e~vr~~L~~L~~~ 90 (127)
+.+-.|..+|-.+=++|-.|=|.+|.--..+...++|...
T Consensus 76 ~~~d~lekKl~~aq~kL~~L~P~~P~Yak~~a~~~q~~~d 115 (158)
T 3tul_A 76 SVYDAATKKLTQAQNKLQSLDPADPGYAQAEAAVEQAGKE 115 (158)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHH
Confidence 3566788999999999999999999877777777777644
No 49
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=21.19 E-value=65 Score=20.13 Aligned_cols=26 Identities=19% Similarity=0.452 Sum_probs=19.4
Q ss_pred HHHHHHHhhcCCCCCcHHHHHHHHHhh
Q psy13626 62 IAVSELSAIFPQNTNNDLIRHALRSLN 88 (127)
Q Consensus 62 ~AV~el~aLFP~~~~~e~vr~~L~~L~ 88 (127)
..+..|.++||.-. .+.|+.+|+.-+
T Consensus 11 e~l~~L~emFP~ld-~~~I~~vL~a~~ 36 (59)
T 1wgl_A 11 EDLKAIQDMFPNMD-QEVIRSVLEAQR 36 (59)
T ss_dssp HHHHHHHHHCSSSC-HHHHHHHHTTTT
T ss_pred HHHHHHHHHCCCCC-HHHHHHHHHHcC
Confidence 56788999999877 777777775433
Done!