RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy13626
         (127 letters)



>2jx0_A ARF GTPase-activating protein GIT1; paxillin binding domain
           homologue, ANK repeat, cytoplasm, GTPase activation,
           metal-binding; NMR {Rattus norvegicus}
          Length = 135

 Score =  101 bits (253), Expect = 4e-29
 Identities = 45/119 (37%), Positives = 72/119 (60%), Gaps = 12/119 (10%)

Query: 20  MPQSEEVVRRTDQVTKRIQELAAHMRSSDKCHSFVPHAERIRIAVSELSAIFPQNTNNDL 79
           +P +E+V+ +T+QVTK IQEL    +      SFVP +E+I +AV+E++++FP+    + 
Sbjct: 13  LPSTEDVILKTEQVTKNIQELLRAAQEFKH-DSFVPCSEKIHLAVTEMASLFPKRPALEP 71

Query: 80  IRHALRSLNTSTVRLQAECAQL-----------EGSAERVRSCAYNMAKANKQLLTQFQ 127
           +R +LR LN S  RLQ+EC +            +   ++V  CAY++AKA KQL+T   
Sbjct: 72  VRSSLRLLNASAYRLQSECRKTVPPEPGAPVDFQLLTQQVIQCAYDIAKAAKQLVTITT 130


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 33.9 bits (77), Expect = 0.009
 Identities = 13/123 (10%), Positives = 42/123 (34%), Gaps = 39/123 (31%)

Query: 26  VVR--RTDQVTKRIQELAAHMRSSDKCHSFVPHAERIRIAVSELSAIFPQNTNNDLI--- 80
            +     +QV   + +  +H          +P  +++ I++         N   +L+   
Sbjct: 340 SISNLTQEQVQDYVNKTNSH----------LPAGKQVEISL--------VNGAKNLVVSG 381

Query: 81  -RHALRSLNTSTVRLQAEC----AQLEGSAERVR--------SCAYN---MAKANKQLLT 124
              +L  LN +  + +A      +++  S  +++        +  ++   +  A+  +  
Sbjct: 382 PPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINK 441

Query: 125 QFQ 127
              
Sbjct: 442 DLV 444


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 26.4 bits (57), Expect = 3.5
 Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 30/80 (37%)

Query: 69  AIFPQNTN----------------------NDLIRHAL--RSLNTSTVRL----QAECAQ 100
           ++FP + +                      N L +++L  +    ST+ +         +
Sbjct: 379 SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK 438

Query: 101 LEGSAERVRSC--AYNMAKA 118
           LE      RS    YN+ K 
Sbjct: 439 LENEYALHRSIVDHYNIPKT 458


>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex,
           octameric RUVA, AAA-ATPase domain, complex with
           nucleotide, hydrolase; HET: ANP; 3.30A {Thermus
           thermophilus} SCOP: a.60.2.1 b.40.4.2
          Length = 191

 Score = 25.6 bits (57), Expect = 4.7
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 63  AVSELSAIFPQNTNNDLIRHALRSL 87
            V +L A  P+    DLI+ AL+ L
Sbjct: 166 VVLDLLAQNPKARAQDLIKEALKRL 190


>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination,
           branch migration, DNA BIND oligomerization, acidic PIN;
           2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A
           2h5x_A 1bvs_A
          Length = 212

 Score = 25.7 bits (57), Expect = 4.8
 Identities = 7/25 (28%), Positives = 10/25 (40%)

Query: 63  AVSELSAIFPQNTNNDLIRHALRSL 87
           A   + A     T +  +R AL  L
Sbjct: 184 ATDTVLAANHDATTSSALRSALSLL 208


>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
           CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A*
           1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
          Length = 806

 Score = 25.1 bits (55), Expect = 7.7
 Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 15/55 (27%)

Query: 1   MGIPNQNNYMECFQSTTTRMPQSEEVVRRTDQVTKRIQELAAHMRSSDKCHSFVP 55
           +GIP+    +E  Q  T  M  +++V          ++++A      ++ H  V 
Sbjct: 369 IGIPDATGRLEILQIHTKNMKLADDV---------DLEQVA------NETHGHVG 408


>1yfz_A Hypoxanthine-guanine phosphoribosyltransferase;
          protein-nucleotide complex; HET: IMP; 2.20A
          {Thermoanaerobacter tengcongensis} SCOP: c.61.1.1 PDB:
          1r3u_A*
          Length = 205

 Score = 24.8 bits (55), Expect = 8.0
 Identities = 8/42 (19%), Positives = 19/42 (45%)

Query: 1  MGIPNQNNYMECFQSTTTRMPQSEEVVRRTDQVTKRIQELAA 42
          MG  +  +  +      + M   EE++   +Q+  +++EL  
Sbjct: 10 MGRGSSTSLYKKAGLMPSPMEDIEEILITEEQLKAKVKELGE 51


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.318    0.125    0.351 

Gapped
Lambda     K      H
   0.267   0.0754    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,714,045
Number of extensions: 84909
Number of successful extensions: 226
Number of sequences better than 10.0: 1
Number of HSP's gapped: 223
Number of HSP's successfully gapped: 14
Length of query: 127
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 44
Effective length of database: 4,384,350
Effective search space: 192911400
Effective search space used: 192911400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.4 bits)