RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13626
         (127 letters)



>d1dqna_ c.61.1.1 (A:) Guanine PRTase {Giardia lamblia [TaxId:
          5741]}
          Length = 230

 Score = 24.9 bits (54), Expect = 3.1
 Identities = 1/36 (2%), Positives = 10/36 (27%)

Query: 7  NNYMECFQSTTTRMPQSEEVVRRTDQVTKRIQELAA 42
          + + +          +   ++   ++      + A 
Sbjct: 15 STFFKDRNDVLESEVKKFHLLATFEECKALAADTAR 50


>d1ixsa_ a.5.1.1 (A:) DNA helicase RuvA subunit, C-terminal domain
          {Thermus thermophilus [TaxId: 274]}
          Length = 50

 Score = 23.0 bits (49), Expect = 5.0
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 59 RIRIAVSELSAIFPQNTNNDLIRHALRSL 87
          + R  V +L A  P+    DLI+ AL+ L
Sbjct: 21 QARAVVLDLLAQNPKARAQDLIKEALKRL 49


>d1k28a3 d.2.1.3 (A:130-345) Tail-associated lysozyme gp5, catalytic
           domain {Bacteriophage T4 [TaxId: 10665]}
          Length = 216

 Score = 23.4 bits (50), Expect = 8.8
 Identities = 2/17 (11%), Positives = 6/17 (35%)

Query: 32  QVTKRIQELAAHMRSSD 48
           Q   R   +   + + +
Sbjct: 190 QTKGRASRVTMIILTGN 206


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.125    0.351 

Gapped
Lambda     K      H
   0.267   0.0597    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 405,600
Number of extensions: 14905
Number of successful extensions: 41
Number of sequences better than 10.0: 1
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 8
Length of query: 127
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 52
Effective length of database: 1,377,846
Effective search space: 71647992
Effective search space used: 71647992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.6 bits)