BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13629
(395 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SOQ|A Chain A, The Structure Of The First Ywtd Beta Propeller Domain Of
Lrp6 In Complex With A Dkk1 Peptide
pdb|3SOV|A Chain A, The Structure Of A Beta Propeller Domain In Complex With
Peptide S
Length = 318
Score = 198 bits (503), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 94/199 (47%), Positives = 131/199 (65%), Gaps = 5/199 (2%)
Query: 109 DIRIANLSRPLKPVTII-KDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKH 167
D+R+ + + + TI+ LE+ AA+D+ + ++ W+D E I F N S
Sbjct: 14 DLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEF--NKTESVQ 71
Query: 168 NVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVP 227
NV+ +GL++PDGLA DWL EKLYWTDSETN++EVS+LDG RKVL+W+++DQPRAIAL P
Sbjct: 72 NVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDP 131
Query: 228 QDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTF 287
M+WTDWGEVPKIER M+G R +I++S I+WPNG+ +D+ + LYW D +L F
Sbjct: 132 SSGFMYWTDWGEVPKIERAGMDGSSRF--IIINSEIYWPNGLTLDYEEQKLYWADAKLNF 189
Query: 288 IEVMDYDGYVRLVTSLGHI 306
I + DG R G +
Sbjct: 190 IHKSNLDGTNRQAVVKGSL 208
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 68/129 (52%), Gaps = 6/129 (4%)
Query: 110 IRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHG-TEMISCCTFDGNNVGSKHN 168
I ++NL L+ V ++L++ AI + WTD G I DG+ S+
Sbjct: 103 IEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS---SRFI 159
Query: 169 VITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQ 228
+I + + P+GL +D+ +KLYW D++ N + S+LDG R+ + + P A+ L
Sbjct: 160 IINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF-- 217
Query: 229 DSIMFWTDW 237
+ I++WTDW
Sbjct: 218 EDILYWTDW 226
>pdb|3SOB|B Chain B, The Structure Of The First Ywtd Beta Propeller Domain Of
Lrp6 In Complex With A Fab
Length = 316
Score = 198 bits (503), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 94/199 (47%), Positives = 131/199 (65%), Gaps = 5/199 (2%)
Query: 109 DIRIANLSRPLKPVTII-KDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKH 167
D+R+ + + + TI+ LE+ AA+D+ + ++ W+D E I F N S
Sbjct: 11 DLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEF--NKTESVQ 68
Query: 168 NVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVP 227
NV+ +GL++PDGLA DWL EKLYWTDSETN++EVS+LDG RKVL+W+++DQPRAIAL P
Sbjct: 69 NVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDP 128
Query: 228 QDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTF 287
M+WTDWGEVPKIER M+G R +I++S I+WPNG+ +D+ + LYW D +L F
Sbjct: 129 SSGFMYWTDWGEVPKIERAGMDGSSRF--IIINSEIYWPNGLTLDYEEQKLYWADAKLNF 186
Query: 288 IEVMDYDGYVRLVTSLGHI 306
I + DG R G +
Sbjct: 187 IHKSNLDGTNRQAVVKGSL 205
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 68/129 (52%), Gaps = 6/129 (4%)
Query: 110 IRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHG-TEMISCCTFDGNNVGSKHN 168
I ++NL L+ V ++L++ AI + WTD G I DG+ S+
Sbjct: 100 IEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS---SRFI 156
Query: 169 VITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQ 228
+I + + P+GL +D+ +KLYW D++ N + S+LDG R+ + + P A+ L
Sbjct: 157 IINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF-- 214
Query: 229 DSIMFWTDW 237
+ I++WTDW
Sbjct: 215 EDILYWTDW 223
>pdb|4DG6|A Chain A, Crystal Structure Of Domains 1 And 2 Of Lrp6
Length = 616
Score = 196 bits (499), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 94/199 (47%), Positives = 131/199 (65%), Gaps = 5/199 (2%)
Query: 109 DIRIANLSRPLKPVTII-KDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKH 167
D+R+ + + + TI+ LE+ AA+D+ + ++ W+D E I F N S
Sbjct: 11 DLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEF--NKTESVQ 68
Query: 168 NVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVP 227
NV+ +GL++PDGLA DWL EKLYWTDSETN++EVS+LDG RKVL+W+++DQPRAIAL P
Sbjct: 69 NVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDP 128
Query: 228 QDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTF 287
M+WTDWGEVPKIER M+G R +I++S I+WPNG+ +D+ + LYW D +L F
Sbjct: 129 SSGFMYWTDWGEVPKIERAGMDGSSRF--IIINSEIYWPNGLTLDYEEQKLYWADAKLNF 186
Query: 288 IEVMDYDGYVRLVTSLGHI 306
I + DG R G +
Sbjct: 187 IHKSNLDGTNRQAVVKGSL 205
Score = 152 bits (384), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 82/198 (41%), Positives = 122/198 (61%), Gaps = 7/198 (3%)
Query: 105 AYLLDIRIANLSRP--LKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNN 162
A D+R +L P V ++D+ AIDY + + WTD I DG+
Sbjct: 315 ARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGS- 373
Query: 163 VGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRA 222
GS+ V+T + PDG+A+DW+ LYWTD+ T+++EV+ L+G RK+L ED+++PRA
Sbjct: 374 -GSQF-VVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRA 431
Query: 223 IALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWID 282
I L P M+WTDWGE+PKIER A++G R V+V++++ WPNG+A+D++ +YW D
Sbjct: 432 IVLDPMVGYMYWTDWGEIPKIERAALDGS--DRVVLVNTSLGWPNGLALDYDEGKIYWGD 489
Query: 283 GRLTFIEVMDYDGYVRLV 300
+ IEVM+ DG R V
Sbjct: 490 AKTDKIEVMNTDGTGRRV 507
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 78/153 (50%), Gaps = 9/153 (5%)
Query: 110 IRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGT-EMISCCTFDGNNVGSKHN 168
I + L+ ++ + I +DLEE AI + WTD G I DG++ +
Sbjct: 408 IEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSD---RVV 464
Query: 169 VITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQ 228
++ L P+GLA+D+ K+YW D++T+K+EV + DG R+VL + I P
Sbjct: 465 LVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKI--PHIFGFTLL 522
Query: 229 DSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDS 261
++WTDW + IER ++ R+VI+D
Sbjct: 523 GDYVYWTDW-QRRSIER--VHKRSAEREVIIDQ 552
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 68/129 (52%), Gaps = 6/129 (4%)
Query: 110 IRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHG-TEMISCCTFDGNNVGSKHN 168
I ++NL L+ V ++L++ AI + WTD G I DG+ S+
Sbjct: 100 IEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS---SRFI 156
Query: 169 VITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQ 228
+I + + P+GL +D+ +KLYW D++ N + S+LDG R+ + + P A+ L
Sbjct: 157 IINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF-- 214
Query: 229 DSIMFWTDW 237
+ I++WTDW
Sbjct: 215 EDILYWTDW 223
>pdb|3S94|A Chain A, Crystal Structure Of Lrp6-E1e2
pdb|3S94|B Chain B, Crystal Structure Of Lrp6-E1e2
Length = 619
Score = 196 bits (499), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 94/199 (47%), Positives = 131/199 (65%), Gaps = 5/199 (2%)
Query: 109 DIRIANLSRPLKPVTII-KDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKH 167
D+R+ + + + TI+ LE+ AA+D+ + ++ W+D E I F N S
Sbjct: 19 DLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEF--NKTESVQ 76
Query: 168 NVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVP 227
NV+ +GL++PDGLA DWL EKLYWTDSETN++EVS+LDG RKVL+W+++DQPRAIAL P
Sbjct: 77 NVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDP 136
Query: 228 QDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTF 287
M+WTDWGEVPKIER M+G R +I++S I+WPNG+ +D+ + LYW D +L F
Sbjct: 137 SSGFMYWTDWGEVPKIERAGMDGSSRF--IIINSEIYWPNGLTLDYEEQKLYWADAKLNF 194
Query: 288 IEVMDYDGYVRLVTSLGHI 306
I + DG R G +
Sbjct: 195 IHKSNLDGTNRQAVVKGSL 213
Score = 152 bits (384), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 82/198 (41%), Positives = 122/198 (61%), Gaps = 7/198 (3%)
Query: 105 AYLLDIRIANLSRP--LKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNN 162
A D+R +L P V ++D+ AIDY + + WTD I DG+
Sbjct: 323 ARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGS- 381
Query: 163 VGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRA 222
GS+ V+T + PDG+A+DW+ LYWTD+ T+++EV+ L+G RK+L ED+++PRA
Sbjct: 382 -GSQF-VVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRA 439
Query: 223 IALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWID 282
I L P M+WTDWGE+PKIER A++G R V+V++++ WPNG+A+D++ +YW D
Sbjct: 440 IVLDPMVGYMYWTDWGEIPKIERAALDGS--DRVVLVNTSLGWPNGLALDYDEGKIYWGD 497
Query: 283 GRLTFIEVMDYDGYVRLV 300
+ IEVM+ DG R V
Sbjct: 498 AKTDKIEVMNTDGTGRRV 515
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 78/153 (50%), Gaps = 9/153 (5%)
Query: 110 IRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGT-EMISCCTFDGNNVGSKHN 168
I + L+ ++ + I +DLEE AI + WTD G I DG++ +
Sbjct: 416 IEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSD---RVV 472
Query: 169 VITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQ 228
++ L P+GLA+D+ K+YW D++T+K+EV + DG R+VL + I P
Sbjct: 473 LVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKI--PHIFGFTLL 530
Query: 229 DSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDS 261
++WTDW + IER ++ R+VI+D
Sbjct: 531 GDYVYWTDW-QRRSIER--VHKRSAEREVIIDQ 560
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 68/129 (52%), Gaps = 6/129 (4%)
Query: 110 IRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHG-TEMISCCTFDGNNVGSKHN 168
I ++NL L+ V ++L++ AI + WTD G I DG+ S+
Sbjct: 108 IEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS---SRFI 164
Query: 169 VITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQ 228
+I + + P+GL +D+ +KLYW D++ N + S+LDG R+ + + P A+ L
Sbjct: 165 IINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF-- 222
Query: 229 DSIMFWTDW 237
+ I++WTDW
Sbjct: 223 EDILYWTDW 231
>pdb|3V64|C Chain C, Crystal Structure Of Agrin And Lrp4
pdb|3V64|D Chain D, Crystal Structure Of Agrin And Lrp4
Length = 349
Score = 170 bits (430), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 82/209 (39%), Positives = 131/209 (62%), Gaps = 8/209 (3%)
Query: 93 ERCSFEKLQPDGAYLLDIRI---ANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHG 149
+R S + L P+ L RI L + ++ +LE A+D+++++ +V W+D
Sbjct: 34 DRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVT 93
Query: 150 TEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKR 209
+ I +G+NV V++ GL +P GLA+DW+ +KLYWTDS T+++EV++LDG R
Sbjct: 94 LDRILRANLNGSNV---EEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR 150
Query: 210 KVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGI 269
KVL W+ +++PRAIAL P + ++WTDWG P+IE +M+G R++I D+ +FWPNG+
Sbjct: 151 KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG--RRIIADTHLFWPNGL 208
Query: 270 AIDFNNRLLYWIDGRLTFIEVMDYDGYVR 298
ID+ R +YW+D + IE + DG R
Sbjct: 209 TIDYAGRRMYWVDAKHHVIERANLDGSHR 237
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 70/129 (54%), Gaps = 6/129 (4%)
Query: 110 IRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHG-TEMISCCTFDGNNVGSKHN 168
I +ANL + V + + LE+ AI + + + WTD G T I + DG+ +
Sbjct: 140 IEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS---GRRI 196
Query: 169 VITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQ 228
+ L P+GL ID+ ++YW D++ + +E ++LDG RK + + + P AI + +
Sbjct: 197 IADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-E 255
Query: 229 DSIMFWTDW 237
DS ++WTDW
Sbjct: 256 DS-LYWTDW 263
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 54/106 (50%), Gaps = 4/106 (3%)
Query: 196 TNKLEVSS-LDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRH 254
N++++ L + L +++ A+ + ++FW+D + +I R +NG +
Sbjct: 50 ANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSD-VTLDRILRANLNGS--N 106
Query: 255 RKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRLV 300
+ +V + + P G+A+D+ + LYW D + IEV + DG R V
Sbjct: 107 VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 152
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Query: 131 GAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLY 190
G IDY ++ + W D +I DG++ + VI+ GL P AI + LY
Sbjct: 207 GLTIDYAGRR--MYWVDAKHHVIERANLDGSH---RKAVISQGL--PHPFAITVFEDSLY 259
Query: 191 WTDSETNKL-EVSSLDGKKRKVL 212
WTD T + + GK ++++
Sbjct: 260 WTDWHTKSINSANKFTGKNQEII 282
>pdb|3V65|B Chain B, Crystal Structure Of Agrin And Lrp4 Complex
pdb|3V65|D Chain D, Crystal Structure Of Agrin And Lrp4 Complex
Length = 386
Score = 169 bits (429), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 82/209 (39%), Positives = 131/209 (62%), Gaps = 8/209 (3%)
Query: 93 ERCSFEKLQPDGAYLLDIRI---ANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHG 149
+R S + L P+ L RI L + ++ +LE A+D+++++ +V W+D
Sbjct: 77 DRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVT 136
Query: 150 TEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKR 209
+ I +G+NV V++ GL +P GLA+DW+ +KLYWTDS T+++EV++LDG R
Sbjct: 137 LDRILRANLNGSNV---EEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR 193
Query: 210 KVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGI 269
KVL W+ +++PRAIAL P + ++WTDWG P+IE +M+G R++I D+ +FWPNG+
Sbjct: 194 KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG--RRIIADTHLFWPNGL 251
Query: 270 AIDFNNRLLYWIDGRLTFIEVMDYDGYVR 298
ID+ R +YW+D + IE + DG R
Sbjct: 252 TIDYAGRRMYWVDAKHHVIERANLDGSHR 280
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 70/129 (54%), Gaps = 6/129 (4%)
Query: 110 IRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHG-TEMISCCTFDGNNVGSKHN 168
I +ANL + V + + LE+ AI + + + WTD G T I + DG+ +
Sbjct: 183 IEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS---GRRI 239
Query: 169 VITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQ 228
+ L P+GL ID+ ++YW D++ + +E ++LDG RK + + + P AI + +
Sbjct: 240 IADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-E 298
Query: 229 DSIMFWTDW 237
DS ++WTDW
Sbjct: 299 DS-LYWTDW 306
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 54/106 (50%), Gaps = 4/106 (3%)
Query: 196 TNKLEVSS-LDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRH 254
N++++ L + L +++ A+ + ++FW+D + +I R +NG +
Sbjct: 93 ANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDV-TLDRILRANLNGS--N 149
Query: 255 RKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRLV 300
+ +V + + P G+A+D+ + LYW D + IEV + DG R V
Sbjct: 150 VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 195
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 8/83 (9%)
Query: 131 GAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLY 190
G IDY ++ W D +I DG++ + VI+ GL P AI + LY
Sbjct: 250 GLTIDYAGRRMY--WVDAKHHVIERANLDGSH---RKAVISQGL--PHPFAITVFEDSLY 302
Query: 191 WTDSETNKL-EVSSLDGKKRKVL 212
WTD T + + GK ++++
Sbjct: 303 WTDWHTKSINSANKFTGKNQEII 325
>pdb|1ZKC|A Chain A, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
pdb|1ZKC|B Chain B, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
Length = 197
Score = 140 bits (354), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 63/101 (62%), Positives = 78/101 (77%)
Query: 295 GYVRLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQXXXXXXXX 354
GYVRL T+ G +NLEL+C++ PKTCENF++ C+ YY+GT FHRSIRNF+IQ
Sbjct: 20 GYVRLHTNKGDLNLELHCDLTPKTCENFIRLCKKHYYDGTIFHRSIRNFVIQGGDPTGTG 79
Query: 355 XXXESIWGKPFEDEFKPNYTHTGRGVLSMANSGPNTNTSQL 395
ES WGKPF+DEF+PN +HTGRG+LSMANSGPN+N SQ
Sbjct: 80 TGGESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQF 120
>pdb|3S2K|A Chain A, Structural Basis Of Wnt Signaling Inhibition By Dickkopf
Binding To Lrp56.
pdb|3S2K|B Chain B, Structural Basis Of Wnt Signaling Inhibition By Dickkopf
Binding To Lrp56
Length = 629
Score = 139 bits (350), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 76/195 (38%), Positives = 113/195 (57%), Gaps = 7/195 (3%)
Query: 109 DIRIANLSRPLKPVTI-IKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKH 167
DIR +L V I + ++E +A+D+ + + WTD + IS +G+ +
Sbjct: 14 DIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSAL---E 70
Query: 168 NVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVP 227
+V+ GL P+G+A+DWL + LYW D+ TN++EVS LDG+ R+VL W+D+D PRA+AL P
Sbjct: 71 HVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDP 130
Query: 228 QDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTF 287
+ M+WT+WG PKI+R AM+G R V + NG+ ID+ R LYW D
Sbjct: 131 AEGFMYWTEWGGKPKIDRAAMDGSERTTLV---PNVGRANGLTIDYAKRRLYWTDLDTNL 187
Query: 288 IEVMDYDGYVRLVTS 302
IE + G R V +
Sbjct: 188 IESSNMLGLNREVIA 202
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 91/195 (46%), Gaps = 6/195 (3%)
Query: 125 IKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNN---VGSKHNVITNGLITPDGLA 181
I L AIDY + W D MI DG+ V N I P L+
Sbjct: 334 IHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLS 393
Query: 182 IDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGE-V 240
ID + +YWT TN + V+ LDG+ V+ + D+PRAI + P+ M++T+ E
Sbjct: 394 IDIYSRYIYWTCEATNVINVTRLDGRSVGVVLKGEQDRPRAIVVNPEKGYMYFTNLQERS 453
Query: 241 PKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRLV 300
PKIER A++G R+V+ S + P +A+D L+W D L IE D G R+V
Sbjct: 454 PKIERAALDGT--EREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRIV 511
Query: 301 TSLGHINLELYCNVF 315
+I + VF
Sbjct: 512 LEDSNILQPVGLTVF 526
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 64/138 (46%), Gaps = 9/138 (6%)
Query: 110 IRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTE-MISCCTFDGNNVGSKHN 168
I ++ L + V + KDL+ A+ + + WT+ G + I DG S+
Sbjct: 102 IEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDG----SERT 157
Query: 169 VITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQ 228
+ + +GL ID+ +LYWTD +TN +E S++ G R+V+ D P L
Sbjct: 158 TLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIA---DDLPHPFGLTQY 214
Query: 229 DSIMFWTDWGEVPKIERG 246
++WTDW IER
Sbjct: 215 QDYIYWTDWSR-RSIERA 231
>pdb|3S8V|A Chain A, Crystal Structure Of Lrp6-Dkk1 Complex
pdb|3S8V|B Chain B, Crystal Structure Of Lrp6-Dkk1 Complex
pdb|3S8Z|A Chain A, Crystal Structure Of Lrp6-E3e4
Length = 623
Score = 139 bits (350), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 76/195 (38%), Positives = 113/195 (57%), Gaps = 7/195 (3%)
Query: 109 DIRIANLSRPLKPVTI-IKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKH 167
DIR +L V I + ++E +A+D+ + + WTD + IS +G+ +
Sbjct: 21 DIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSAL---E 77
Query: 168 NVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVP 227
+V+ GL P+G+A+DWL + LYW D+ TN++EVS LDG+ R+VL W+D+D PRA+AL P
Sbjct: 78 HVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDP 137
Query: 228 QDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTF 287
+ M+WT+WG PKI+R AM+G R V + NG+ ID+ R LYW D
Sbjct: 138 AEGFMYWTEWGGKPKIDRAAMDGSERTTLV---PNVGRANGLTIDYAKRRLYWTDLDTNL 194
Query: 288 IEVMDYDGYVRLVTS 302
IE + G R V +
Sbjct: 195 IESSNMLGLNREVIA 209
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 91/195 (46%), Gaps = 6/195 (3%)
Query: 125 IKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNN---VGSKHNVITNGLITPDGLA 181
I L AIDY + W D MI DG+ V N I P L+
Sbjct: 341 IHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLS 400
Query: 182 IDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGE-V 240
ID + +YWT TN + V+ LDG+ V+ + D+PRAI + P+ M++T+ E
Sbjct: 401 IDIYSRYIYWTCEATNVINVTRLDGRSVGVVLKGEQDRPRAIVVNPEKGYMYFTNLQERS 460
Query: 241 PKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRLV 300
PKIER A++G R+V+ S + P +A+D L+W D L IE D G R+V
Sbjct: 461 PKIERAALDGT--EREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRIV 518
Query: 301 TSLGHINLELYCNVF 315
+I + VF
Sbjct: 519 LEDSNILQPVGLTVF 533
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 64/138 (46%), Gaps = 9/138 (6%)
Query: 110 IRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTE-MISCCTFDGNNVGSKHN 168
I ++ L + V + KDL+ A+ + + WT+ G + I DG S+
Sbjct: 109 IEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDG----SERT 164
Query: 169 VITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQ 228
+ + +GL ID+ +LYWTD +TN +E S++ G R+V+ D P L
Sbjct: 165 TLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIA---DDLPHPFGLTQY 221
Query: 229 DSIMFWTDWGEVPKIERG 246
++WTDW IER
Sbjct: 222 QDYIYWTDWSR-RSIERA 238
>pdb|4A0P|A Chain A, Crystal Structure Of Lrp6p3e3p4e4
Length = 628
Score = 139 bits (350), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 76/195 (38%), Positives = 113/195 (57%), Gaps = 7/195 (3%)
Query: 109 DIRIANLSRPLKPVTI-IKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKH 167
DIR +L V I + ++E +A+D+ + + WTD + IS +G+ +
Sbjct: 16 DIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSAL---E 72
Query: 168 NVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVP 227
+V+ GL P+G+A+DWL + LYW D+ TN++EVS LDG+ R+VL W+D+D PRA+AL P
Sbjct: 73 HVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDP 132
Query: 228 QDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTF 287
+ M+WT+WG PKI+R AM+G R V + NG+ ID+ R LYW D
Sbjct: 133 AEGFMYWTEWGGKPKIDRAAMDGSERTTLV---PNVGRANGLTIDYAKRRLYWTDLDTNL 189
Query: 288 IEVMDYDGYVRLVTS 302
IE + G R V +
Sbjct: 190 IESSNMLGLNREVIA 204
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 93/198 (46%), Gaps = 12/198 (6%)
Query: 125 IKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGL------ITPD 178
I L AIDY + W D MI DG+ V+ + + I P
Sbjct: 336 IHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQ---GFTVVVSSVPSQNLEIQPY 392
Query: 179 GLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWG 238
L+ID + +YWT TN + V+ LDG+ V+ + D+PRA+ + P+ M++T+
Sbjct: 393 DLSIDIYSRYIYWTCEATNVINVTRLDGRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQ 452
Query: 239 E-VPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYV 297
E PKIER A++G R+V+ S + P +A+D L+W D L IE D G
Sbjct: 453 ERSPKIERAALDGT--EREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGAN 510
Query: 298 RLVTSLGHINLELYCNVF 315
R+V +I + VF
Sbjct: 511 RIVLEDSNILQPVGLTVF 528
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 64/138 (46%), Gaps = 9/138 (6%)
Query: 110 IRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTE-MISCCTFDGNNVGSKHN 168
I ++ L + V + KDL+ A+ + + WT+ G + I DG S+
Sbjct: 104 IEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDG----SERT 159
Query: 169 VITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQ 228
+ + +GL ID+ +LYWTD +TN +E S++ G R+V+ D P L
Sbjct: 160 TLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIA---DDLPHPFGLTQY 216
Query: 229 DSIMFWTDWGEVPKIERG 246
++WTDW IER
Sbjct: 217 QDYIYWTDWSR-RSIERA 233
>pdb|1IJQ|A Chain A, Crystal Structure Of The Ldl Receptor Ywtd-Egf Domain Pair
pdb|1IJQ|B Chain B, Crystal Structure Of The Ldl Receptor Ywtd-Egf Domain Pair
Length = 316
Score = 124 bits (310), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 102/191 (53%), Gaps = 4/191 (2%)
Query: 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFD-GNNVGSKH 167
++R L R + ++I +L A+D + + W+D MI D + V S
Sbjct: 11 EVRKMTLDRS-EYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD 69
Query: 168 NVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVP 227
VI+ + PDGLA+DW+ +YWTDS + V+ G KRK L+ E+ +PRAI + P
Sbjct: 70 TVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDP 129
Query: 228 QDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTF 287
M+WTDWG KI++G +NG + +V I WPNGI +D + LYW+D +L
Sbjct: 130 VHGFMYWTDWGTPAKIKKGGLNGVDIYS--LVTENIQWPNGITLDLLSGRLYWVDSKLHS 187
Query: 288 IEVMDYDGYVR 298
I +D +G R
Sbjct: 188 ISSIDVNGGNR 198
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
Query: 145 WTDHGT-EMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSS 203
WTD GT I +G ++ ++++T + P+G+ +D L+ +LYW DS+ + +
Sbjct: 136 WTDWGTPAKIKKGGLNGVDI---YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSID 192
Query: 204 LDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTD 236
++G RK + ++ +L + +FWTD
Sbjct: 193 VNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTD 225
>pdb|3P5B|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 400
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 102/191 (53%), Gaps = 4/191 (2%)
Query: 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFD-GNNVGSKH 167
++R L R + ++I +L A+D + + W+D MI D + V S
Sbjct: 93 EVRKMTLDRS-EYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD 151
Query: 168 NVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVP 227
VI+ + PDGLA+DW+ +YWTDS + V+ G KRK L+ E+ +PRAI + P
Sbjct: 152 TVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDP 211
Query: 228 QDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTF 287
M+WTDWG KI++G +NG + +V I WPNGI +D + LYW+D +L
Sbjct: 212 VHGFMYWTDWGTPAKIKKGGLNGVDIYS--LVTENIQWPNGITLDLLSGRLYWVDSKLHS 269
Query: 288 IEVMDYDGYVR 298
I +D +G R
Sbjct: 270 ISSIDVNGGNR 280
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
Query: 145 WTDHGT-EMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSS 203
WTD GT I +G ++ ++++T + P+G+ +D L+ +LYW DS+ + +
Sbjct: 218 WTDWGTPAKIKKGGLNGVDI---YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSID 274
Query: 204 LDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTD 236
++G RK + ++ +L + +FWTD
Sbjct: 275 VNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTD 307
>pdb|3P5C|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 440
Score = 122 bits (307), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 102/191 (53%), Gaps = 4/191 (2%)
Query: 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFD-GNNVGSKH 167
++R L R + ++I +L A+D + + W+D MI D + V S
Sbjct: 133 EVRKMTLDRS-EYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD 191
Query: 168 NVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVP 227
VI+ + PDGLA+DW+ +YWTDS + V+ G KRK L+ E+ +PRAI + P
Sbjct: 192 TVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDP 251
Query: 228 QDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTF 287
M+WTDWG KI++G +NG + +V I WPNGI +D + LYW+D +L
Sbjct: 252 VHGFMYWTDWGTPAKIKKGGLNGVDIYS--LVTENIQWPNGITLDLLSGRLYWVDSKLHS 309
Query: 288 IEVMDYDGYVR 298
I +D +G R
Sbjct: 310 ISSIDVNGGNR 320
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
Query: 145 WTDHGT-EMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSS 203
WTD GT I +G ++ ++++T + P+G+ +D L+ +LYW DS+ + +
Sbjct: 258 WTDWGTPAKIKKGGLNGVDI---YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSID 314
Query: 204 LDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTD 236
++G RK + ++ +L + +FWTD
Sbjct: 315 VNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTD 347
>pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The
Ldl Receptor
Length = 791
Score = 121 bits (303), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 71/200 (35%), Positives = 105/200 (52%), Gaps = 9/200 (4%)
Query: 105 AYLL-----DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFD 159
AYL ++R L R + ++I +L A+D + + W+D MI D
Sbjct: 396 AYLFFTNRHEVRKMTLDRS-EYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLD 454
Query: 160 -GNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDID 218
+ V S VI+ + PDGLA+DW+ +YWTDS + V+ G KRK L+ E+
Sbjct: 455 RAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGS 514
Query: 219 QPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLL 278
+PRAI + P M+WTDWG KI++G +NG + +V I WPNGI +D + L
Sbjct: 515 KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS--LVTENIQWPNGITLDLLSGRL 572
Query: 279 YWIDGRLTFIEVMDYDGYVR 298
YW+D +L I +D +G R
Sbjct: 573 YWVDSKLHSISSIDVNGGNR 592
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 145 WTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSL 204
WTD GT G N ++++T + P+G+ +D L+ +LYW DS+ + + +
Sbjct: 530 WTDWGTPAKI--KKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDV 587
Query: 205 DGKKRKVLYWEDIDQPRAIALVPQDSIMFWTD 236
+G RK + ++ +L + +FWTD
Sbjct: 588 NGGNRKTILEDEKRLAHPFSLAVFEDKVFWTD 619
>pdb|1N7D|A Chain A, Extracellular Domain Of The Ldl Receptor
Length = 699
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 71/200 (35%), Positives = 104/200 (52%), Gaps = 9/200 (4%)
Query: 105 AYLL-----DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFD 159
AYL ++R L R + ++I +L A+D + + W+D MI D
Sbjct: 378 AYLFFTNRHEVRKMTLDRS-EYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLD 436
Query: 160 -GNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDID 218
+ V S VI+ + PDGLA+DW+ +YWTDS + V+ G KRK L+ E
Sbjct: 437 RAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGS 496
Query: 219 QPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLL 278
+PRAI + P M+WTDWG KI++G +NG + +V I WPNGI +D + L
Sbjct: 497 KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS--LVTENIQWPNGITLDLLSGRL 554
Query: 279 YWIDGRLTFIEVMDYDGYVR 298
YW+D +L I +D +G R
Sbjct: 555 YWVDSKLHSISSIDVNGGNR 574
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 145 WTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSL 204
WTD GT G N ++++T + P+G+ +D L+ +LYW DS+ + + +
Sbjct: 512 WTDWGTPAKI--KKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDV 569
Query: 205 DGKKRKVLYWEDIDQPRAIALVPQDSIMFWTD 236
+G RK + ++ +L + +FWTD
Sbjct: 570 NGGNRKTILEDEKRLAHPFSLAVFEDKVFWTD 601
>pdb|2K7N|A Chain A, Solution Structure Of The Ppil1 Bound To A Fragment Of
Skip
Length = 203
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/99 (53%), Positives = 64/99 (64%)
Query: 297 VRLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQXXXXXXXXXX 356
V L TS+G I LELY PKTC+NF + GYYNGTKFHR I++FMIQ
Sbjct: 14 VYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGRG 73
Query: 357 XESIWGKPFEDEFKPNYTHTGRGVLSMANSGPNTNTSQL 395
SI+GK FEDE P+ TG G+L+MAN+GP+TN SQ
Sbjct: 74 GASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQF 112
>pdb|1XWN|A Chain A, Solution Structure Of Cyclophilin Like 1(Ppil1) And
Insights Into Its Interaction With Skip
Length = 174
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/99 (53%), Positives = 64/99 (64%)
Query: 297 VRLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQXXXXXXXXXX 356
V L TS+G I LELY PKTC+NF + GYYNGTKFHR I++FMIQ
Sbjct: 14 VYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGRG 73
Query: 357 XESIWGKPFEDEFKPNYTHTGRGVLSMANSGPNTNTSQL 395
SI+GK FEDE P+ TG G+L+MAN+GP+TN SQ
Sbjct: 74 GASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQF 112
>pdb|2OJU|A Chain A, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
pdb|2OJU|B Chain B, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
Length = 167
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 50/99 (50%), Positives = 62/99 (62%)
Query: 297 VRLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQXXXXXXXXXX 356
V L T +G I +E++C PKTCENF+ C + YYNG FHR+I+ FM+Q
Sbjct: 9 VTLHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGTGRG 68
Query: 357 XESIWGKPFEDEFKPNYTHTGRGVLSMANSGPNTNTSQL 395
SIWGK FEDE+ H RGV+SMAN+GPNTN SQ
Sbjct: 69 GNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQF 107
>pdb|2X7K|A Chain A, The Crystal Structure Of Ppil1 In Complex With
Cyclosporine A Suggests A Binding Mode For Skip
Length = 166
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/99 (53%), Positives = 64/99 (64%)
Query: 297 VRLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQXXXXXXXXXX 356
V L TS+G I LELY PKTC+NF + GYYNGTKFHR I++FMIQ
Sbjct: 14 VYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGRG 73
Query: 357 XESIWGKPFEDEFKPNYTHTGRGVLSMANSGPNTNTSQL 395
SI+GK FEDE P+ TG G+L+MAN+GP+TN SQ
Sbjct: 74 GASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQF 112
>pdb|1XYH|A Chain A, Crystal Structure Of Recombinant Human Cyclophilin J
pdb|2OK3|A Chain A, X-Ray Structure Of Human Cyclophilin J At 2.0 Angstrom
Length = 161
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 50/99 (50%), Positives = 62/99 (62%)
Query: 297 VRLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQXXXXXXXXXX 356
V L T +G I +E++C PKTCENF+ C + YYNG FHR+I+ FM+Q
Sbjct: 3 VTLHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGTGRG 62
Query: 357 XESIWGKPFEDEFKPNYTHTGRGVLSMANSGPNTNTSQL 395
SIWGK FEDE+ H RGV+SMAN+GPNTN SQ
Sbjct: 63 GNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQF 101
>pdb|2B71|A Chain A, Plasmodium Yoelii Cyclophilin-Like Protein
Length = 196
Score = 98.2 bits (243), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 49/101 (48%), Positives = 63/101 (62%)
Query: 295 GYVRLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQXXXXXXXX 354
GY+ + T+LG +ELY PKTC NF CE G+Y+ T FHR I NF+IQ
Sbjct: 39 GYITIYTNLGDFEVELYWYHSPKTCLNFYTLCEMGFYDNTIFHRVIPNFVIQGGDPTGTG 98
Query: 355 XXXESIWGKPFEDEFKPNYTHTGRGVLSMANSGPNTNTSQL 395
+SI+G+ FEDE HTG G+LSM+N+GPNTN+SQ
Sbjct: 99 KGGKSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQF 139
>pdb|2A2N|A Chain A, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|B Chain B, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|C Chain C, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
Length = 176
Score = 91.3 bits (225), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 48/95 (50%), Positives = 54/95 (56%)
Query: 301 TSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQXXXXXXXXXXXESI 360
TS+G I+ +L+ PKT ENF H NGYYNG FHR I+ FMIQ ESI
Sbjct: 28 TSMGDIHTKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTGMGGESI 87
Query: 361 WGKPFEDEFKPNYTHTGRGVLSMANSGPNTNTSQL 395
WG FEDEF H LSMAN+G NTN SQ
Sbjct: 88 WGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQF 122
>pdb|2POE|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_1660
pdb|2QER|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl- Prolyl Cis-Trans Isomerase Cgd2_1660 In
The Presence Of Dipeptide Ala-Pro
Length = 185
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 62/103 (60%), Gaps = 4/103 (3%)
Query: 297 VRLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQXXXXXXXXXX 356
VR++T+ G + EL+C+ PK C+NF+ +GYY T FH++I+ F+IQ
Sbjct: 19 VRIITNYGDLKFELFCSQCPKACKNFLALSASGYYKNTIFHKNIKGFIIQGGDPTGTGKG 78
Query: 357 XESIWGKPFEDEFKPNYTHTGRGVLSMANSG----PNTNTSQL 395
ESI+G+ F+DE P + RG+LSMA+ G PNTN SQ
Sbjct: 79 GESIYGRYFDDEIYPELKYDRRGILSMASKGASKKPNTNGSQF 121
>pdb|1NPE|A Chain A, Crystal Structure Of Nidogen/laminin Complex
Length = 267
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 85/163 (52%), Gaps = 8/163 (4%)
Query: 131 GAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLY 190
G A D K +V WTD I + G G +I L +P+G+A+D L ++
Sbjct: 40 GLAFDCVDK--VVYWTDISEPSIGRASLHG---GEPTTIIRQDLGSPEGIALDHLGRTIF 94
Query: 191 WTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWG-EVPKIERGAMN 249
WTDS+ +++EV+ +DG +R+VL+ + PR I P ++WTDW + PKIE M+
Sbjct: 95 WTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD 154
Query: 250 GDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMD 292
G +R+++ + PNG+ D + L W+D E ++
Sbjct: 155 GT--NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLN 195
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 88/198 (44%), Gaps = 18/198 (9%)
Query: 120 KPVTIIK-DL--EEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLIT 176
+P TII+ DL EG A+D+ + + WTD + I DG + + GL+
Sbjct: 69 EPTTIIRQDLGSPEGIALDHLGR--TIFWTDSQLDRIEVAKMDGTQ---RRVLFDTGLVN 123
Query: 177 PDGLAIDWLTEKLYWTD--SETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFW 234
P G+ D + LYWTD + K+E S +DG R++L +++ P + S + W
Sbjct: 124 PRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCW 183
Query: 235 TDWGEVPKIERGAMN-GDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDY 293
D G + E +N P RKV+ + +P A+ + LY+ D + + MD
Sbjct: 184 VDAG-THRAE--CLNPAQPGRRKVL--EGLQYP--FAVTSYGKNLYYTDWKTNSVIAMDL 236
Query: 294 DGYVRLVTSLGHINLELY 311
+ T H LY
Sbjct: 237 AISKEMDTFHPHKQTRLY 254
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 229 DSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFI 288
D +++WTD E P I R +++G I+ + P GIA+D R ++W D +L I
Sbjct: 47 DKVVYWTDISE-PSIGRASLHGG--EPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRI 103
Query: 289 EVMDYDGYVRLV 300
EV DG R V
Sbjct: 104 EVAKMDGTQRRV 115
>pdb|3BO7|A Chain A, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|B Chain B, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|C Chain C, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|D Chain D, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
Length = 201
Score = 88.6 bits (218), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 65/117 (55%), Gaps = 12/117 (10%)
Query: 291 MDYDGYVRLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQX--- 347
+ GY+R+VT+ G +N+EL+ ++ P+ C++F++ C Y++ T FHR IRNFMIQ
Sbjct: 3 LKKKGYLRIVTTQGSLNIELHADMAPRACDSFLRLCAVKYFDDTIFHRCIRNFMIQGGRA 62
Query: 348 -----XXXXXXXXXXESI----WGKPFEDEFKPNYTHTGRGVLSMANSGPNTNTSQL 395
SI G PFEDEF H G GVLSMAN G ++N S+
Sbjct: 63 ELRQPSKKKEVQQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEF 119
>pdb|2FU0|A Chain A, Plasmodium Falciparum Cyclophilin Pfe0505w Putative
Cyclosporin- Binding Domain
Length = 160
Score = 84.7 bits (208), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 57/97 (58%)
Query: 299 LVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQXXXXXXXXXXXE 358
+ T++G I++ L+ KT +NF H NGYYN FHR I++FM+Q E
Sbjct: 10 IYTTMGDIHISLFYKECKKTVQNFSVHSINGYYNNCIFHRVIKHFMVQTGDPSGDGTGGE 69
Query: 359 SIWGKPFEDEFKPNYTHTGRGVLSMANSGPNTNTSQL 395
SIWG FEDEF + H+ ++SMAN GPNTN SQ
Sbjct: 70 SIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQF 106
>pdb|2HQ6|A Chain A, Structure Of The Cyclophilin_cecyp16-like Domain Of The
Serologically Defined Colon Cancer Antigen 10 From Homo
Sapiens
Length = 185
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 58/102 (56%)
Query: 294 DGYVRLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQXXXXXXX 353
+G V L T+ G I++EL+ PK C NF++ C YY+ T FHR + F++Q
Sbjct: 24 NGKVLLKTTAGDIDIELWSKEAPKACRNFIQLCLEAYYDNTIFHRVVPGFIVQGGDPTGT 83
Query: 354 XXXXESIWGKPFEDEFKPNYTHTGRGVLSMANSGPNTNTSQL 395
ESI+G PF+DEF RG+++MAN+G + N SQ
Sbjct: 84 GSGGESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQF 125
>pdb|1DYW|A Chain A, Biochemical And Structural Characterization Of A Divergent
Loop Cyclophilin From Caenorhabditis Elegans
pdb|1E3B|A Chain A, Cyclophilin 3 From C.Elegans Complexed With Aup(Et)3
pdb|1E8K|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ala-Pro
pdb|2IGV|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ser-Pro
pdb|2IGW|A Chain A, Cyclophilin 3 Complexed With Dipeptide Gly-Pro
Length = 173
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/104 (50%), Positives = 60/104 (57%), Gaps = 14/104 (13%)
Query: 304 GHINLELYCNVFPKTCENFMKHC--ENG--------YYNGTKFHRSIRNFMIQXXX-XXX 352
G I +ELY +V PKT NF C ENG ++ G+KFHR I NFMIQ
Sbjct: 18 GRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTRG 77
Query: 353 XXXXXESIWGKPFEDE-FKPNYTHTGRGVLSMANSGPNTNTSQL 395
ESI+G+ F DE FK HTG GVLSMAN+GPNTN SQ
Sbjct: 78 NGTGGESIYGEKFPDENFKEK--HTGPGVLSMANAGPNTNGSQF 119
>pdb|3R49|A Chain A, Human Cyclophilin D Complexed With Quinolin-8-Amine
pdb|3R4G|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R54|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R56|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R57|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R59|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RCF|A Chain A, Human Cyclophilin D Complexed With N-[(4-Aminophenyl)
Sulfonyl]benzamide
pdb|3RCG|A Chain A, Human Cyclophilin D Complexed With Dimethylformamide
pdb|3RCI|X Chain X, Human Cyclophilin D Complexed With
5-Methyl-1,2-Oxazol-3-Amine
pdb|3RCK|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RCL|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RD9|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDA|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDB|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RDC|A Chain A, Human Cyclophilin D Complexed With An Inhibitor
Length = 166
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/99 (48%), Positives = 57/99 (57%), Gaps = 9/99 (9%)
Query: 303 LGHINLELYCNVFPKTCENFMKHC--ENGY-YNGTKFHRSIRNFMIQXX-XXXXXXXXXE 358
LG + LEL +V PKT ENF C E G+ Y G+ FHR I +FM Q +
Sbjct: 18 LGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGK 77
Query: 359 SIWGKPFEDEFKPNYT--HTGRGVLSMANSGPNTNTSQL 395
SI+G F DE N+T H G GVLSMAN+GPNTN SQ
Sbjct: 78 SIYGSRFPDE---NFTLKHVGPGVLSMANAGPNTNGSQF 113
>pdb|2Z6W|A Chain A, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
pdb|2Z6W|B Chain B, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
Length = 165
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/99 (48%), Positives = 57/99 (57%), Gaps = 9/99 (9%)
Query: 303 LGHINLELYCNVFPKTCENFMKHC--ENGY-YNGTKFHRSIRNFMIQXX-XXXXXXXXXE 358
LG + LEL +V PKT ENF C E G+ Y G+ FHR I +FM Q +
Sbjct: 17 LGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGK 76
Query: 359 SIWGKPFEDEFKPNYT--HTGRGVLSMANSGPNTNTSQL 395
SI+G F DE N+T H G GVLSMAN+GPNTN SQ
Sbjct: 77 SIYGSRFPDE---NFTLKHVGPGVLSMANAGPNTNGSQF 112
>pdb|2BIT|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution
pdb|2BIU|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution, Dmso Complex
Length = 165
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/99 (48%), Positives = 57/99 (57%), Gaps = 9/99 (9%)
Query: 303 LGHINLELYCNVFPKTCENFMKHC--ENGY-YNGTKFHRSIRNFMIQXX-XXXXXXXXXE 358
LG + LEL +V PKT ENF C E G+ Y G+ FHR I +FM Q +
Sbjct: 17 LGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGK 76
Query: 359 SIWGKPFEDEFKPNYT--HTGRGVLSMANSGPNTNTSQL 395
SI+G F DE N+T H G GVLSMAN+GPNTN SQ
Sbjct: 77 SIYGSRFPDE---NFTLKHVGPGVLSMANAGPNTNGSQF 112
>pdb|3QYU|A Chain A, Crystal Structure Of Human Cyclophilin D At 1.54 A
Resolution At Room Temperature
Length = 164
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/99 (48%), Positives = 57/99 (57%), Gaps = 9/99 (9%)
Query: 303 LGHINLELYCNVFPKTCENFMKHC--ENGY-YNGTKFHRSIRNFMIQXX-XXXXXXXXXE 358
LG + LEL +V PKT ENF C E G+ Y G+ FHR I +FM Q +
Sbjct: 16 LGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGK 75
Query: 359 SIWGKPFEDEFKPNYT--HTGRGVLSMANSGPNTNTSQL 395
SI+G F DE N+T H G GVLSMAN+GPNTN SQ
Sbjct: 76 SIYGSRFPDE---NFTLKHVGPGVLSMANAGPNTNGSQF 111
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 74.7 bits (182), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 57/105 (54%), Gaps = 13/105 (12%)
Query: 303 LGHINLELYCNVFPKTCENFMKHC--ENG---------YYNGTKFHRSIRNFMIQXXX-X 350
+G I LEL+ ++ PKT ENF C E G ++ G FHR I+ FMIQ
Sbjct: 29 VGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFS 88
Query: 351 XXXXXXXESIWGKPFEDEFKPNYTHTGRGVLSMANSGPNTNTSQL 395
ESI+G+ FEDE +Y H G+LSMAN+G NTN SQ
Sbjct: 89 NQNGTGGESIYGEKFEDE-NFHYKHDKEGLLSMANAGSNTNGSQF 132
>pdb|2HQJ|A Chain A, Cyclophilin From Leishmania Major
Length = 183
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 54/107 (50%), Gaps = 13/107 (12%)
Query: 302 SLGHINLELYCNVFPKTCENFMKHC--ENG--------YYNGTKFHRSIRNFMIQXXX-X 350
+ G I +ELY + PKT ENF C E G +Y + FHR I NFMIQ
Sbjct: 20 AAGRIVMELYADTVPKTAENFRALCTGEKGKGRSGKPLHYKSSVFHRVIPNFMIQGGDFT 79
Query: 351 XXXXXXXESIWGKPFEDEFKPNYT--HTGRGVLSMANSGPNTNTSQL 395
ESI+G F DE HTG G LSMAN+GPNTN SQ
Sbjct: 80 RGNGTGGESIYGTTFRDESFSGKAGRHTGLGCLSMANAGPNTNGSQF 126
>pdb|1M9E|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex.
pdb|1M9E|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex
Length = 164
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/99 (45%), Positives = 58/99 (58%), Gaps = 9/99 (9%)
Query: 303 LGHINLELYCNVFPKTCENF--MKHCENGY-YNGTKFHRSIRNFMIQXX-XXXXXXXXXE 358
LG ++ EL+ + PKT ENF + E G+ Y G+ FHR I FM Q +
Sbjct: 17 LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGK 76
Query: 359 SIWGKPFEDEFKPNY--THTGRGVLSMANSGPNTNTSQL 395
SI+G+ FEDE N+ HTG G+LSMAN+GPNTN SQ
Sbjct: 77 SIYGEKFEDE---NFILKHTGPGILSMANAGPNTNGSQF 112
>pdb|2X2A|A Chain A, Free Acetyl-Cypa Trigonal Form
pdb|2X2A|B Chain B, Free Acetyl-Cypa Trigonal Form
Length = 165
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/99 (45%), Positives = 58/99 (58%), Gaps = 9/99 (9%)
Query: 303 LGHINLELYCNVFPKTCENF--MKHCENGY-YNGTKFHRSIRNFMIQXX-XXXXXXXXXE 358
LG ++ EL+ + PKT ENF + E G+ Y G+ FHR I FM Q +
Sbjct: 17 LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGK 76
Query: 359 SIWGKPFEDEFKPNY--THTGRGVLSMANSGPNTNTSQL 395
SI+G+ FEDE N+ HTG G+LSMAN+GPNTN SQ
Sbjct: 77 SIYGEKFEDE---NFILKHTGPGILSMANAGPNTNGSQF 112
>pdb|1BCK|A Chain A, Human Cyclophilin A Complexed With 2-Thr Cyclosporin
pdb|1CWO|A Chain A, Human Cyclophilin A Complexed With Thr2, Leu5, D-Hiv8,
Leu10 Cyclosporin
Length = 165
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/99 (45%), Positives = 58/99 (58%), Gaps = 9/99 (9%)
Query: 303 LGHINLELYCNVFPKTCENF--MKHCENGY-YNGTKFHRSIRNFMIQXX-XXXXXXXXXE 358
LG ++ EL+ + PKT ENF + E G+ Y G+ FHR I FM Q +
Sbjct: 17 LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGK 76
Query: 359 SIWGKPFEDEFKPNY--THTGRGVLSMANSGPNTNTSQL 395
SI+G+ FEDE N+ HTG G+LSMAN+GPNTN SQ
Sbjct: 77 SIYGEKFEDE---NFILKHTGPGILSMANAGPNTNGSQF 112
>pdb|5CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Gly-Pro
pdb|4CYH|A Chain A, Cyclophilin A Complexed With Dipeptide His-Pro
pdb|3CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ser-Pro
pdb|2CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ala-Pro
pdb|1RMH|A Chain A, Recombinant Cyclophilin A From Human T Cell
pdb|1RMH|B Chain B, Recombinant Cyclophilin A From Human T Cell
pdb|1AWQ|A Chain A, Cypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWR|A Chain A, Cypa Complexed With Hagpia
pdb|1AWR|B Chain B, Cypa Complexed With Hagpia
pdb|1AWR|C Chain C, Cypa Complexed With Hagpia
pdb|1AWR|D Chain D, Cypa Complexed With Hagpia
pdb|1AWR|E Chain E, Cypa Complexed With Hagpia
pdb|1AWR|F Chain F, Cypa Complexed With Hagpia
pdb|1AWU|A Chain A, Cypa Complexed With Hvgpia (Pseudo-Symmetric Monomer)
pdb|1AWV|A Chain A, Cypa Complexed With Hvgpia
pdb|1AWV|B Chain B, Cypa Complexed With Hvgpia
pdb|1AWV|C Chain C, Cypa Complexed With Hvgpia
pdb|1AWV|D Chain D, Cypa Complexed With Hvgpia
pdb|1AWV|E Chain E, Cypa Complexed With Hvgpia
pdb|1AWV|F Chain F, Cypa Complexed With Hvgpia
Length = 164
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/99 (45%), Positives = 58/99 (58%), Gaps = 9/99 (9%)
Query: 303 LGHINLELYCNVFPKTCENF--MKHCENGY-YNGTKFHRSIRNFMIQXX-XXXXXXXXXE 358
LG ++ EL+ + PKT ENF + E G+ Y G+ FHR I FM Q +
Sbjct: 16 LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGK 75
Query: 359 SIWGKPFEDEFKPNY--THTGRGVLSMANSGPNTNTSQL 395
SI+G+ FEDE N+ HTG G+LSMAN+GPNTN SQ
Sbjct: 76 SIYGEKFEDE---NFILKHTGPGILSMANAGPNTNGSQF 111
>pdb|2X2C|K Chain K, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|M Chain M, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|O Chain O, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|Q Chain Q, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|S Chain S, Acetyl-Cypa:cyclosporine Complex
pdb|2X2D|B Chain B, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
pdb|2X2D|C Chain C, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
Length = 165
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/99 (45%), Positives = 58/99 (58%), Gaps = 9/99 (9%)
Query: 303 LGHINLELYCNVFPKTCENF--MKHCENGY-YNGTKFHRSIRNFMIQXX-XXXXXXXXXE 358
LG ++ EL+ + PKT ENF + E G+ Y G+ FHR I FM Q +
Sbjct: 17 LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGK 76
Query: 359 SIWGKPFEDEFKPNY--THTGRGVLSMANSGPNTNTSQL 395
SI+G+ FEDE N+ HTG G+LSMAN+GPNTN SQ
Sbjct: 77 SIYGEKFEDE---NFILKHTGPGILSMANAGPNTNGSQF 112
>pdb|2RMA|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|1CWC|A Chain A, Improved Binding Affinity For Cyclophilin A By A
Cyclosporin Derivative Singly Modified At Its Effector
Domain
pdb|1CWB|A Chain A, The X-Ray Structure Of (Mebm2t)1-Cyclosporin Complexed
With Cyclophilin A Provides An Explanation For Its
Anomalously High Immunosuppressive Activity
pdb|1CWA|A Chain A, X-Ray Structure Of A Monomeric Cyclophilin A-Cyclosporin A
Crystal Complex At 2.1 Angstroms Resolution
pdb|1MIK|A Chain A, The Role Of Water Molecules In The Structure-Based Design
Of (5- Hydroxynorvaline)-2-Cyclosporin: Synthesis,
Biological Activity, And Crystallographic Analysis With
Cyclophilin A
pdb|1FGL|A Chain A, Cyclophilin A Complexed With A Fragment Of Hiv-1 Gag
Protein
pdb|1AK4|A Chain A, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1AK4|B Chain B, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1CWF|A Chain A, Human Cyclophilin A Complexed With 2-Val Cyclosporin
pdb|1CWH|A Chain A, Human Cyclophilin A Complexed With 3-D-Ser Cyclosporin
pdb|1CWK|A Chain A, Human Cyclophilin A Complexed With 1-(6,7-Dihydro)mebmt
2-Val 3-D-(2- S-Methyl)sarcosine Cyclosporin
pdb|1CWL|A Chain A, Human Cyclophilin A Complexed With 4 4-Hydroxy-Meleu
Cyclosporin
pdb|1CWM|A Chain A, Human Cyclophilin A Complexed With 4 Meile Cyclosporin
pdb|1CWI|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-(N-Methyl)-D-Alanine Cyclosporin
pdb|1CWJ|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-S-Methyl-Sarcosine Cyclosporin
pdb|1VBS|A Chain A, Structure Of Cyclophilin Complexed With (D)ala Containing
Tetrapeptide
pdb|1VBT|A Chain A, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1VBT|B Chain B, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1M63|C Chain C, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1M63|G Chain G, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1MF8|C Chain C, Crystal Structure Of Human Calcineurin Complexed With
Cyclosporin A And Human Cyclophilin
pdb|1NMK|A Chain A, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1NMK|B Chain B, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1M9C|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9C|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9D|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9D|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9F|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9F|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9X|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9Y|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1W8L|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8M|A Chain A, Enzymatic And Structural Characterisation Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8V|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1YND|A Chain A, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1YND|B Chain B, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1ZKF|A Chain A, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1ZKF|B Chain B, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1OCA|A Chain A, Human Cyclophilin A, Unligated, Nmr, 20 Structures
pdb|2CPL|A Chain A, Similarities And Differences Between Human Cyclophilin A
And Other Beta-Barrel Structures. Structural Refinement
At 1.63 Angstroms Resolution
pdb|3CYS|A Chain A, Determination Of The Nmr Solution Structure Of The
Cyclophilin A- Cyclosporin A Complex
pdb|3K0M|A Chain A, Cryogenic Structure Of Cypa
pdb|3K0N|A Chain A, Room Temperature Structure Of Cypa
pdb|3ODI|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODL|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
Length = 165
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/99 (45%), Positives = 58/99 (58%), Gaps = 9/99 (9%)
Query: 303 LGHINLELYCNVFPKTCENF--MKHCENGY-YNGTKFHRSIRNFMIQXX-XXXXXXXXXE 358
LG ++ EL+ + PKT ENF + E G+ Y G+ FHR I FM Q +
Sbjct: 17 LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGK 76
Query: 359 SIWGKPFEDEFKPNY--THTGRGVLSMANSGPNTNTSQL 395
SI+G+ FEDE N+ HTG G+LSMAN+GPNTN SQ
Sbjct: 77 SIYGEKFEDE---NFILKHTGPGILSMANAGPNTNGSQF 112
>pdb|2XGY|B Chain B, Complex Of Rabbit Endogenous Lentivirus (Relik)capsid With
Cyclophilin A
Length = 173
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/99 (45%), Positives = 58/99 (58%), Gaps = 9/99 (9%)
Query: 303 LGHINLELYCNVFPKTCENF--MKHCENGY-YNGTKFHRSIRNFMIQXX-XXXXXXXXXE 358
LG ++ EL+ + PKT ENF + E G+ Y G+ FHR I FM Q +
Sbjct: 25 LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGK 84
Query: 359 SIWGKPFEDEFKPNY--THTGRGVLSMANSGPNTNTSQL 395
SI+G+ FEDE N+ HTG G+LSMAN+GPNTN SQ
Sbjct: 85 SIYGEKFEDE---NFILKHTGPGILSMANAGPNTNGSQF 120
>pdb|2ALF|A Chain A, Crystal Structure Of Human Cypa Mutant K131a
Length = 164
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/99 (45%), Positives = 58/99 (58%), Gaps = 9/99 (9%)
Query: 303 LGHINLELYCNVFPKTCENF--MKHCENGY-YNGTKFHRSIRNFMIQXX-XXXXXXXXXE 358
LG ++ EL+ + PKT ENF + E G+ Y G+ FHR I FM Q +
Sbjct: 16 LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGK 75
Query: 359 SIWGKPFEDEFKPNY--THTGRGVLSMANSGPNTNTSQL 395
SI+G+ FEDE N+ HTG G+LSMAN+GPNTN SQ
Sbjct: 76 SIYGEKFEDE---NFILKHTGPGILSMANAGPNTNGSQF 111
>pdb|3RDD|A Chain A, Human Cyclophilin A Complexed With An Inhibitor
Length = 184
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/99 (45%), Positives = 58/99 (58%), Gaps = 9/99 (9%)
Query: 303 LGHINLELYCNVFPKTCENF--MKHCENGY-YNGTKFHRSIRNFMIQXX-XXXXXXXXXE 358
LG ++ EL+ + PKT ENF + E G+ Y G+ FHR I FM Q +
Sbjct: 36 LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGK 95
Query: 359 SIWGKPFEDEFKPNY--THTGRGVLSMANSGPNTNTSQL 395
SI+G+ FEDE N+ HTG G+LSMAN+GPNTN SQ
Sbjct: 96 SIYGEKFEDE---NFILKHTGPGILSMANAGPNTNGSQF 131
>pdb|2X83|B Chain B, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
pdb|2X83|D Chain D, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
Length = 163
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/99 (45%), Positives = 58/99 (58%), Gaps = 9/99 (9%)
Query: 303 LGHINLELYCNVFPKTCENF--MKHCENGY-YNGTKFHRSIRNFMIQXX-XXXXXXXXXE 358
LG ++ EL+ + PKT ENF + E G+ Y G+ FHR I FM Q +
Sbjct: 16 LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTHHNGTGGK 75
Query: 359 SIWGKPFEDEFKPNY--THTGRGVLSMANSGPNTNTSQL 395
SI+G+ FEDE N+ HTG G+LSMAN+GPNTN SQ
Sbjct: 76 SIYGEKFEDE---NFILKHTGPGILSMANAGPNTNGSQF 111
>pdb|2WLW|A Chain A, Structure Of The N-Terminal Capsid Domain Of Hiv-2
pdb|4DGA|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGA|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGB|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-2 Ca
Cyclophilin- Binding Loop Complex
pdb|4DGC|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|C Chain C, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|D Chain D, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|E Chain E, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
Length = 165
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/99 (45%), Positives = 58/99 (58%), Gaps = 9/99 (9%)
Query: 303 LGHINLELYCNVFPKTCENF--MKHCENGY-YNGTKFHRSIRNFMIQXXX-XXXXXXXXE 358
LG ++ EL+ + PKT ENF + E G+ Y G+ FHR I FM Q +
Sbjct: 17 LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGNFTHHNGTGGK 76
Query: 359 SIWGKPFEDEFKPNY--THTGRGVLSMANSGPNTNTSQL 395
SI+G+ FEDE N+ HTG G+LSMAN+GPNTN SQ
Sbjct: 77 SIYGEKFEDE---NFILKHTGPGILSMANAGPNTNGSQF 112
>pdb|4DGD|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant
pdb|4DGE|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
pdb|4DGE|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
Length = 165
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/99 (45%), Positives = 58/99 (58%), Gaps = 9/99 (9%)
Query: 303 LGHINLELYCNVFPKTCENF--MKHCENGY-YNGTKFHRSIRNFMIQXXX-XXXXXXXXE 358
LG ++ EL+ + PKT ENF + E G+ Y G+ FHR I FM Q +
Sbjct: 17 LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGNFTHCNGTGGK 76
Query: 359 SIWGKPFEDEFKPNY--THTGRGVLSMANSGPNTNTSQL 395
SI+G+ FEDE N+ HTG G+LSMAN+GPNTN SQ
Sbjct: 77 SIYGEKFEDE---NFILKHTGPGILSMANAGPNTNGSQF 112
>pdb|2X25|B Chain B, Free Acetyl-Cypa Orthorhombic Form
Length = 169
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/99 (45%), Positives = 58/99 (58%), Gaps = 9/99 (9%)
Query: 303 LGHINLELYCNVFPKTCENF--MKHCENGY-YNGTKFHRSIRNFMIQXX-XXXXXXXXXE 358
LG ++ EL+ + PKT ENF + E G+ Y G+ FHR I FM Q +
Sbjct: 21 LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGK 80
Query: 359 SIWGKPFEDEFKPNY--THTGRGVLSMANSGPNTNTSQL 395
SI+G+ FEDE N+ HTG G+LSMAN+GPNTN SQ
Sbjct: 81 SIYGEKFEDE---NFILKHTGPGILSMANAGPNTNGSQF 116
>pdb|3K0O|A Chain A, Room Temperature Structure Of Cypa Mutant Ser99thr
pdb|3K0P|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr
pdb|3K0Q|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr (2)
Length = 165
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 58/99 (58%), Gaps = 9/99 (9%)
Query: 303 LGHINLELYCNVFPKTCENF--MKHCENGY-YNGTKFHRSIRNFMIQXX-XXXXXXXXXE 358
LG ++ EL+ + PKT ENF + E G+ Y G+ FHR I FM Q +
Sbjct: 17 LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGK 76
Query: 359 SIWGKPFEDEFKPNY--THTGRGVLSMANSGPNTNTSQL 395
SI+G+ FEDE N+ HTG G+L+MAN+GPNTN SQ
Sbjct: 77 SIYGEKFEDE---NFILKHTGPGILTMANAGPNTNGSQF 112
>pdb|3K0R|A Chain A, Cryogenic Structure Of Cypa Mutant Arg55lys
Length = 165
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 58/99 (58%), Gaps = 9/99 (9%)
Query: 303 LGHINLELYCNVFPKTCENF--MKHCENGY-YNGTKFHRSIRNFMIQXX-XXXXXXXXXE 358
LG ++ EL+ + PKT ENF + E G+ Y G+ FH+ I FM Q +
Sbjct: 17 LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHKIIPGFMCQGGDFTRHNGTGGK 76
Query: 359 SIWGKPFEDEFKPNY--THTGRGVLSMANSGPNTNTSQL 395
SI+G+ FEDE N+ HTG G+LSMAN+GPNTN SQ
Sbjct: 77 SIYGEKFEDE---NFILKHTGPGILSMANAGPNTNGSQF 112
>pdb|2ESL|A Chain A, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|B Chain B, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|C Chain C, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|D Chain D, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|E Chain E, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|F Chain F, Human Cyclophilin C In Complex With Cyclosporin A
Length = 190
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/98 (45%), Positives = 57/98 (58%), Gaps = 7/98 (7%)
Query: 303 LGHINLELYCNVFPKTCENF--MKHCENGY-YNGTKFHRSIRNFMIQXXXXXXXXXXXE- 358
+G I + L+ V PKT ENF + E GY Y G+KFHR I++FMIQ
Sbjct: 29 VGRIVIGLFGKVVPKTVENFVALATGEKGYGYKGSKFHRVIKDFMIQGGDITTGDGTGGV 88
Query: 359 SIWGKPFEDE-FKPNYTHTGRGVLSMANSGPNTNTSQL 395
SI+G+ F DE FK H G G +SMAN+GP+TN SQ
Sbjct: 89 SIYGETFPDENFK--LKHYGIGWVSMANAGPDTNGSQF 124
>pdb|1QOI|A Chain A, U4U6 SNRNP-Specific Cyclophilin Snucyp-20
pdb|1MZW|A Chain A, Crystal Structure Of A U4U6 SNRNP COMPLEX BETWEEN HUMAN
Spliceosomal Cyclophilin H And A U4U6-60k Peptide
Length = 177
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 56/103 (54%), Gaps = 12/103 (11%)
Query: 303 LGHINLELYCNVFPKTCENFMKHCENGY--------YNGTKFHRSIRNFMIQXX-XXXXX 353
+G + +EL+ +V PKT ENF + C + Y G+ FHR I++FMIQ
Sbjct: 24 VGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGD 83
Query: 354 XXXXESIWGKPFEDE-FKPNYTHTGRGVLSMANSGPNTNTSQL 395
SI+ PF DE FK H+ G+LSMANSGP+TN Q
Sbjct: 84 GTGVASIYRGPFADENFK--LRHSAPGLLSMANSGPSTNGCQF 124
>pdb|1Z81|A Chain A, Crystal Structure Of Cyclophilin From Plasmodium Yoelii
Length = 229
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 52/102 (50%), Gaps = 10/102 (9%)
Query: 303 LGHINLELYCNVFPKTCENFMKHCENGY--------YNGTKFHRSIRNFMIQXXXXXXXX 354
LG EL+ N+ PKT ENF + C Y Y T FHR I+ FMIQ
Sbjct: 73 LGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEFMIQGGDFINHN 132
Query: 355 XXXE-SIWGKPFEDEFKPNYTHTGRGVLSMANSGPNTNTSQL 395
SI+G+ F+DE + H G+LSMANSGPNTN Q
Sbjct: 133 GSGSLSIYGEKFDDE-NFDIKHDKEGLLSMANSGPNTNGCQF 173
>pdb|2RMC|A Chain A, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|C Chain C, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|E Chain E, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|G Chain G, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
Length = 182
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/98 (45%), Positives = 57/98 (58%), Gaps = 7/98 (7%)
Query: 303 LGHINLELYCNVFPKTCENF--MKHCENGY-YNGTKFHRSIRNFMIQXXXXXXXXXXXE- 358
+G I + L+ NV PKT ENF + E GY Y G+ FHR I++FMIQ
Sbjct: 21 VGRIVIGLFGNVVPKTVENFVALATGEKGYGYKGSIFHRVIKDFMIQGGDFTARDGTGGM 80
Query: 359 SIWGKPFEDE-FKPNYTHTGRGVLSMANSGPNTNTSQL 395
SI+G+ F DE FK H G G +SMAN+GP+TN SQ
Sbjct: 81 SIYGETFPDENFK--LKHYGIGWVSMANAGPDTNGSQF 116
>pdb|4I9Y|A Chain A, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|B Chain B, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|C Chain C, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|D Chain D, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|E Chain E, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|F Chain F, Structure Of The C-terminal Domain Of Nup358
Length = 167
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 55/97 (56%), Gaps = 5/97 (5%)
Query: 303 LGHINLELYCNVFPKTCENFMKHC--ENGY-YNGTKFHRSIRNFMIQXXXXXXX-XXXXE 358
LG I +EL+ N+ P+T ENF C E G+ + + FHR I +F+ Q +
Sbjct: 20 LGRITMELFSNIVPRTAENFRALCTGEKGFGFKNSIFHRVIPDFVCQGGDITKHDGTGGQ 79
Query: 359 SIWGKPFEDEFKPNYTHTGRGVLSMANSGPNTNTSQL 395
SI+G FEDE + HTG G+LSMAN G NTN SQ
Sbjct: 80 SIYGDKFEDE-NFDVKHTGPGLLSMANQGQNTNNSQF 115
>pdb|1IST|A Chain A, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1IST|B Chain B, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1VDN|A Chain A, Crystal Structure Of Yeast Cyclophilin A Complexed With
Ace-Ala-Ala- Pro-Ala-7-Amino-4-Methylcoumarin
Length = 162
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/98 (43%), Positives = 57/98 (58%), Gaps = 7/98 (7%)
Query: 303 LGHINLELYCNVFPKTCENFMKHC--ENGY-YNGTKFHRSIRNFMIQXX-XXXXXXXXXE 358
+G + +LY ++ PKT ENF C E G+ Y G+ FHR I +FM+Q +
Sbjct: 15 IGRVVFKLYNDIVPKTAENFRALCTGEKGFGYAGSPFHRVIPDFMLQGGDFTAGNGTGGK 74
Query: 359 SIWGKPFEDE-FKPNYTHTGRGVLSMANSGPNTNTSQL 395
SI+G F DE FK + H G+LSMAN+GPNTN SQ
Sbjct: 75 SIYGGKFPDENFKKH--HDRPGLLSMANAGPNTNGSQF 110
>pdb|2R99|A Chain A, Crystal Structure Of Cyclophilin Abh-Like Domain Of Human
Peptidylprolyl Isomerase E Isoform 1
Length = 173
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/98 (45%), Positives = 55/98 (56%), Gaps = 9/98 (9%)
Query: 304 GHINLELYCNVFPKTCENFMKHC--ENGY-YNGTKFHRSIRNFMIQXXX-XXXXXXXXES 359
G I + L +V P T ENF C E G+ + G+ FHR I FM Q +S
Sbjct: 26 GRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKS 85
Query: 360 IWGKPFEDEFKPNY--THTGRGVLSMANSGPNTNTSQL 395
I+GK F+DE N+ HTG G+LSMANSGPNTN SQ
Sbjct: 86 IYGKKFDDE---NFILKHTGPGLLSMANSGPNTNGSQF 120
>pdb|1QNG|A Chain A, Plasmodium Falciparum Cyclophilin Complexed With
Cyclosporin A
Length = 170
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 56/105 (53%), Gaps = 11/105 (10%)
Query: 301 TSLGHINLELYCNVFPKTCENFMKHC---------ENGYYNGTKFHRSIRNFMIQXX-XX 350
++ G I EL+ ++ P+TCENF C +N +Y + FHR I FM Q
Sbjct: 15 SNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQGGDIT 74
Query: 351 XXXXXXXESIWGKPFEDEFKPNYTHTGRGVLSMANSGPNTNTSQL 395
ESI+G+ F DE N H G+LSMAN+GPNTN+SQ
Sbjct: 75 NGNGSGGESIYGRSFTDE-NFNMKHDQPGLLSMANAGPNTNSSQF 118
>pdb|1QNH|A Chain A, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
pdb|1QNH|B Chain B, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
Length = 170
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 56/105 (53%), Gaps = 11/105 (10%)
Query: 301 TSLGHINLELYCNVFPKTCENFMKHC---------ENGYYNGTKFHRSIRNFMIQXX-XX 350
++ G I EL+ ++ P+TCENF C +N +Y + FHR I FM Q
Sbjct: 15 SNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQGGDIT 74
Query: 351 XXXXXXXESIWGKPFEDEFKPNYTHTGRGVLSMANSGPNTNTSQL 395
ESI+G+ F DE N H G+LSMAN+GPNTN+SQ
Sbjct: 75 NGNGSGGESIYGRSFTDE-NFNMKHDQPGLLSMANAGPNTNSSQF 118
>pdb|1ZMF|A Chain A, C Domain Of Human Cyclophilin-33(Hcyp33)
Length = 165
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 45/98 (45%), Positives = 55/98 (56%), Gaps = 9/98 (9%)
Query: 304 GHINLELYCNVFPKTCENFMKHC--ENGY-YNGTKFHRSIRNFMIQXXX-XXXXXXXXES 359
G I + L +V P T ENF C E G+ + G+ FHR I FM Q +S
Sbjct: 18 GRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKS 77
Query: 360 IWGKPFEDEFKPNY--THTGRGVLSMANSGPNTNTSQL 395
I+GK F+DE N+ HTG G+LSMANSGPNTN SQ
Sbjct: 78 IYGKKFDDE---NFILKHTGPGLLSMANSGPNTNGSQF 112
>pdb|1AWS|A Chain A, Secypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWT|A Chain A, Secypa Complexed With Hagpia
pdb|1AWT|B Chain B, Secypa Complexed With Hagpia
pdb|1AWT|C Chain C, Secypa Complexed With Hagpia
pdb|1AWT|D Chain D, Secypa Complexed With Hagpia
pdb|1AWT|E Chain E, Secypa Complexed With Hagpia
pdb|1AWT|F Chain F, Secypa Complexed With Hagpia
Length = 164
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 43/99 (43%), Positives = 56/99 (56%), Gaps = 9/99 (9%)
Query: 303 LGHINLELYCNVFPKTCENF--MKHCENGY-YNGTKFHRSIRNFMIQXX-XXXXXXXXXE 358
LG ++ EL+ + PKT ENF + E G+ Y G+ FHR I F Q +
Sbjct: 16 LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFXCQGGDFTRHNGTGGK 75
Query: 359 SIWGKPFEDEFKPNY--THTGRGVLSMANSGPNTNTSQL 395
SI+G+ FEDE N+ HTG G+LS AN+GPNTN SQ
Sbjct: 76 SIYGEKFEDE---NFILKHTGPGILSXANAGPNTNGSQF 111
>pdb|2CK1|A Chain A, The Structure Of Oxidised Cyclophilin A From S. Mansoni
pdb|2CMT|A Chain A, The Structure Of Reduced Cyclophilin A From S. Mansoni
Length = 172
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 43/96 (44%), Positives = 53/96 (55%), Gaps = 5/96 (5%)
Query: 304 GHINLELYCNVFPKTCENFMKHC--ENGY-YNGTKFHRSIRNFMIQXXXXXXX-XXXXES 359
G I +EL ++ P+T ENF C E G+ Y+ FHR I FM Q +S
Sbjct: 25 GRIVMELRSDIVPRTAENFRALCTGERGFGYHNCCFHRVIPQFMCQGGDFVKGDGTGGKS 84
Query: 360 IWGKPFEDEFKPNYTHTGRGVLSMANSGPNTNTSQL 395
I+G+ F+DE H G GVLSMANSGPNTN SQ
Sbjct: 85 IYGRKFDDE-NFQLRHEGFGVLSMANSGPNTNGSQF 119
>pdb|2CFE|A Chain A, The 1.5 A Crystal Structure Of The Malassezia Sympodialis
Mala S 6 Allergen, A Member Of The Cyclophilin Pan-
Allergen Family
Length = 162
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 53/97 (54%), Gaps = 5/97 (5%)
Query: 303 LGHINLELYCNVFPKTCENFMKHC--ENGY-YNGTKFHRSIRNFMIQXX-XXXXXXXXXE 358
LG I +L+ +V PKT NF C E G+ Y G+ FHR I +FM+Q +
Sbjct: 15 LGTIKFKLFDDVVPKTAANFRALCTGEKGFGYAGSHFHRVIPDFMLQGGDFTAGNGTGGK 74
Query: 359 SIWGKPFEDEFKPNYTHTGRGVLSMANSGPNTNTSQL 395
SI+G F DE H G+LSMAN+GPNTN SQ
Sbjct: 75 SIYGAKFADE-NFQLKHNKPGLLSMANAGPNTNGSQF 110
>pdb|1C5F|A Chain A, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|C Chain C, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|E Chain E, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|G Chain G, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|I Chain I, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|K Chain K, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|M Chain M, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|O Chain O, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1A33|A Chain A, Peptidylprolyl Isomerase, Cyclophilin-Like Domain From
Brugia Malayi
pdb|1A58|A Chain A, Cyclophilin From Brugia Malayi
Length = 177
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 54/104 (51%), Gaps = 13/104 (12%)
Query: 304 GHINLELYCNVFPKTCENFMKHCENG-----------YYNGTKFHRSIRNFMIQXX-XXX 351
G I +ELY ++ P+TC NF+ C +Y G+ FHR I+NFMIQ
Sbjct: 21 GRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTK 80
Query: 352 XXXXXXESIWGKPFEDEFKPNYTHTGRGVLSMANSGPNTNTSQL 395
ESI+G F+DE + H V+SMAN GPNTN SQ
Sbjct: 81 GDGTGGESIYGGMFDDE-EFVMKHDEPFVVSMANKGPNTNGSQF 123
>pdb|1XO7|A Chain A, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|B Chain B, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|C Chain C, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|D Chain D, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XQ7|A Chain A, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|B Chain B, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|C Chain C, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
Length = 166
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 55/97 (56%), Gaps = 6/97 (6%)
Query: 303 LGHINLELYCNVFPKTCENF--MKHCENGY-YNGTKFHRSIRNFMIQXXX-XXXXXXXXE 358
+G + + L+ N PKT ENF + ENG+ Y G+ FHR IRNFMIQ +
Sbjct: 19 VGRVVIGLFGNDVPKTVENFKQLASGENGFGYKGSIFHRVIRNFMIQGGDFTNFDGTGGK 78
Query: 359 SIWGKPFEDEFKPNYTHTGRGVLSMANSGPNTNTSQL 395
SI+G F+DE H G +SMAN+GPN+N SQ
Sbjct: 79 SIYGTRFDDE-NLKIKHF-VGAVSMANAGPNSNGSQF 113
>pdb|2C3B|A Chain A, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
pdb|2C3B|B Chain B, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
Length = 172
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 54/102 (52%), Gaps = 11/102 (10%)
Query: 301 TSLGHINLELYCNVFPKTCENFMKHCEN----GYYNGTKFHRSIRNFMIQXXX-XXXXXX 355
T +G I L+ PKT +NF + C+ GY T FHR I NFMIQ
Sbjct: 19 TKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYREST-FHRIIPNFMIQGGDFTRGNGT 77
Query: 356 XXESIWGKPFEDEFKPNYT--HTGRGVLSMANSGPNTNTSQL 395
SI+G F DE N++ H +G+LSMAN+GPNTN SQ
Sbjct: 78 GGRSIYGDKFADE---NFSRKHDKKGILSMANAGPNTNGSQF 116
>pdb|2PLU|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_4120
pdb|2POY|A Chain A, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|B Chain B, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|C Chain C, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
Length = 186
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 52/106 (49%), Gaps = 12/106 (11%)
Query: 301 TSLGHINLELYCNVFPKTCENFMKHC--ENGY--------YNGTKFHRSIRNFMIQXXXX 350
T G I +EL+ + P T ENF C E G Y G+ FHR I FMIQ
Sbjct: 31 TPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRIIPQFMIQGGDF 90
Query: 351 XXX-XXXXESIWGKPFEDEFKPNYTHTGRGVLSMANSGPNTNTSQL 395
ESI+G F DE YTH +LSMAN+GPNTN SQ
Sbjct: 91 TRGDGTGGESIYGSKFRDE-NFVYTHDAPFLLSMANAGPNTNGSQF 135
>pdb|3BT8|A Chain A, Crystal Structure Of Mutant Cyclophilin (R147a) From
Leishmania Donovani
Length = 172
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 54/97 (55%), Gaps = 6/97 (6%)
Query: 303 LGHINLELYCNVFPKTCENFMKHC--ENGY-YNGTKFHRSIRNFMIQXXXXXXX-XXXXE 358
LG I + L+ P T ENF + C E+G+ Y + FHR I+NFMIQ +
Sbjct: 25 LGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQNFMIQGGDFTNFDGTGGK 84
Query: 359 SIWGKPFEDEFKPNYTHTGRGVLSMANSGPNTNTSQL 395
SI+G+ F DE N H G LSMAN+GPNTN SQ
Sbjct: 85 SIYGEKFADE-NLNVKHF-VGALSMANAGPNTNGSQF 119
>pdb|2HAQ|A Chain A, Crystal Structure Of Cyclophilin A From Leishmania
Donovani
pdb|3EOV|A Chain A, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
pdb|3EOV|B Chain B, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
Length = 172
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 54/97 (55%), Gaps = 6/97 (6%)
Query: 303 LGHINLELYCNVFPKTCENFMKHC--ENGY-YNGTKFHRSIRNFMIQXXXXXXX-XXXXE 358
LG I + L+ P T ENF + C E+G+ Y + FHR I+NFMIQ +
Sbjct: 25 LGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQNFMIQGGDFTNFDGTGGK 84
Query: 359 SIWGKPFEDEFKPNYTHTGRGVLSMANSGPNTNTSQL 395
SI+G+ F DE N H G LSMAN+GPNTN SQ
Sbjct: 85 SIYGEKFADE-NLNVKHF-VGALSMANAGPNTNGSQF 119
>pdb|1H0P|A Chain A, Cyclophilin_5 From C. Elegans
Length = 182
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 52/98 (53%), Gaps = 7/98 (7%)
Query: 303 LGHINLELYCNVFPKTCENFM---KHCENGYYNGTKFHRSIRNFMIQXXXXXXX-XXXXE 358
+G I + L+ PKT NF+ K + Y G+KFHR I +FMIQ
Sbjct: 20 IGRIVIGLFGKTVPKTATNFIELAKKPKGEGYPGSKFHRVIADFMIQGGDFTRGDGTGGR 79
Query: 359 SIWGKPFEDE-FKPNYTHTGRGVLSMANSGPNTNTSQL 395
SI+G+ F DE FK H G G LSMAN+G +TN SQ
Sbjct: 80 SIYGEKFADENFK--LKHYGAGWLSMANAGADTNGSQF 115
>pdb|3K2C|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|B Chain B, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|C Chain C, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|D Chain D, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
Length = 193
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 51/98 (52%), Gaps = 5/98 (5%)
Query: 302 SLGHINLELYCNVFPKTCENFMKHCE---NGYYNGTKFHRSIRNFMIQXXX-XXXXXXXX 357
SLG I ++L ++ PKT +NF CE Y G+ FHR I FM+Q
Sbjct: 40 SLGRIVMKLEDDIVPKTAKNFRTLCERPKGEGYKGSTFHRIIPGFMVQGGDYTAHNGTGG 99
Query: 358 ESIWGKPFEDEFKPNYTHTGRGVLSMANSGPNTNTSQL 395
SI+G+ F DE HT G+LSMAN G +TN SQ
Sbjct: 100 RSIYGEKFPDE-NFELKHTKEGILSMANCGAHTNGSQF 136
>pdb|3UCH|A Chain A, Crystal Structure Of A Hypotherical Peptidyl-Prolyl
Cis-Trans Isomerase E (Ppie) From Homo Sapiens At 2.50 A
Resolution
Length = 174
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/98 (43%), Positives = 52/98 (53%), Gaps = 9/98 (9%)
Query: 304 GHINLELYCNVFPKTCENFMKHC--ENGY-YNGTKFHRSIRNFMIQXXX-XXXXXXXXES 359
G I L +V P T ENF C E G+ + G+ FHR I F Q +S
Sbjct: 27 GRIQXLLRSDVVPXTAENFRCLCTHEKGFGFKGSSFHRIIPQFXCQGGDFTNHNGTGGKS 86
Query: 360 IWGKPFEDEFKPNY--THTGRGVLSMANSGPNTNTSQL 395
I+GK F+DE N+ HTG G+LS ANSGPNTN SQ
Sbjct: 87 IYGKKFDDE---NFILKHTGPGLLSXANSGPNTNGSQF 121
>pdb|3BKP|A Chain A, Crystal Structure Of The Toxoplasma Gondii Cyclophilin,
49.m03261
Length = 232
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 54/102 (52%), Gaps = 2/102 (1%)
Query: 295 GYVRLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQXX--XXXX 352
G V L TSLG +++EL+ P C NF++ C GYY T FHR +++F++Q
Sbjct: 22 GKVVLHTSLGDLDVELWARECPLACRNFVQLCLEGYYVNTIFHRVVKDFIVQGGDPTGTG 81
Query: 353 XXXXXESIWGKPFEDEFKPNYTHTGRGVLSMANSGPNTNTSQ 394
+ GKPF+ E P RG++ +AN G ++ ++
Sbjct: 82 RGGADTTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAE 123
>pdb|2HE9|A Chain A, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
pdb|2HE9|B Chain B, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
Length = 192
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 56/107 (52%), Gaps = 17/107 (15%)
Query: 303 LGHINLELYCNVFPKTCENFMKHC--ENGY---------YNGTKFHRSIRNFMIQXX-XX 350
+G I +L+ ++ PKTC+NF+ C E G Y G+ FHR ++NFMIQ
Sbjct: 33 VGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKNFMIQGGDFS 92
Query: 351 XXXXXXXESIWGKPFEDEFKPNY--THTGRGVLSMANSGPNTNTSQL 395
ESI+G F+DE N+ H +LSMAN G +TN SQ
Sbjct: 93 EGNGKGGESIYGGYFKDE---NFILKHDRAFLLSMANRGKHTNGSQF 136
>pdb|4FRU|A Chain A, Crystal Structure Of Horse Wild-Type Cyclophilin B
Length = 185
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 55/98 (56%), Gaps = 7/98 (7%)
Query: 303 LGHINLELYCNVFPKTCENF--MKHCENGY-YNGTKFHRSIRNFMIQXXX-XXXXXXXXE 358
+G + + L+ PKT +NF + E G+ Y +KFHR I++FMIQ +
Sbjct: 26 IGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVIKDFMIQGGDFTRGDGTGGK 85
Query: 359 SIWGKPFEDE-FKPNYTHTGRGVLSMANSGPNTNTSQL 395
SI+G+ F DE FK H G G +SMAN+G +TN SQ
Sbjct: 86 SIYGERFPDENFK--LKHYGPGWVSMANAGKDTNGSQF 121
>pdb|4FRV|A Chain A, Crystal Structure Of Mutated Cyclophilin B That Causes
Hyperelastosis Cutis In The American Quarter Horse
Length = 185
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 55/98 (56%), Gaps = 7/98 (7%)
Query: 303 LGHINLELYCNVFPKTCENF--MKHCENGY-YNGTKFHRSIRNFMIQXXX-XXXXXXXXE 358
+G + + L+ PKT +NF + E G+ Y +KFHR I++FMIQ +
Sbjct: 26 IGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVIKDFMIQGGDFTRGDGTGGK 85
Query: 359 SIWGKPFEDE-FKPNYTHTGRGVLSMANSGPNTNTSQL 395
SI+G+ F DE FK H G G +SMAN+G +TN SQ
Sbjct: 86 SIYGERFPDENFK--LKHYGPGWVSMANAGKDTNGSQF 121
>pdb|3ICH|A Chain A, Crystal Structure Of Cyclophilin B At 1.2 A Resolution
pdb|3ICI|A Chain A, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
pdb|3ICI|B Chain B, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
Length = 188
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 54/98 (55%), Gaps = 7/98 (7%)
Query: 303 LGHINLELYCNVFPKTCENF--MKHCENGY-YNGTKFHRSIRNFMIQXXX-XXXXXXXXE 358
+G + L+ PKT +NF + E G+ Y +KFHR I++FMIQ +
Sbjct: 29 VGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGK 88
Query: 359 SIWGKPFEDE-FKPNYTHTGRGVLSMANSGPNTNTSQL 395
SI+G+ F DE FK H G G +SMAN+G +TN SQ
Sbjct: 89 SIYGERFPDENFK--LKHYGPGWVSMANAGKDTNGSQF 124
>pdb|1CYN|A Chain A, Cyclophilin B Complexed With
[d-(Cholinylester)ser8]-Cyclosporin
Length = 178
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 54/98 (55%), Gaps = 7/98 (7%)
Query: 303 LGHINLELYCNVFPKTCENF--MKHCENGY-YNGTKFHRSIRNFMIQXXXXXXX-XXXXE 358
+G + L+ PKT +NF + E G+ Y +KFHR I++FMIQ +
Sbjct: 19 VGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGK 78
Query: 359 SIWGKPFEDE-FKPNYTHTGRGVLSMANSGPNTNTSQL 395
SI+G+ F DE FK H G G +SMAN+G +TN SQ
Sbjct: 79 SIYGERFPDENFK--LKHYGPGWVSMANAGKDTNGSQF 114
>pdb|2GW2|A Chain A, Crystal Structure Of The Peptidyl-Prolyl Isomerase Domain
Of Human Cyclophilin G
Length = 198
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 51/104 (49%), Gaps = 13/104 (12%)
Query: 304 GHINLELYCNVFPKTCENFMKHC--ENG---------YYNGTKFHRSIRNFMIQXX-XXX 351
G + EL+ +V PKTCENF C E G +Y FHR +++FM+Q
Sbjct: 41 GRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSE 100
Query: 352 XXXXXXESIWGKPFEDEFKPNYTHTGRGVLSMANSGPNTNTSQL 395
ESI+G FEDE H +LSMAN G +TN SQ
Sbjct: 101 GNGRGGESIYGGFFEDE-SFAVKHNAAFLLSMANRGKDTNGSQF 143
>pdb|2WFI|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G
Length = 179
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 51/104 (49%), Gaps = 13/104 (12%)
Query: 304 GHINLELYCNVFPKTCENFMKHC--ENG---------YYNGTKFHRSIRNFMIQXX-XXX 351
G + EL+ +V PKTCENF C E G +Y FHR +++FM+Q
Sbjct: 24 GRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSXLFHRVVKDFMVQGGDFSE 83
Query: 352 XXXXXXESIWGKPFEDEFKPNYTHTGRGVLSMANSGPNTNTSQL 395
ESI+G FEDE H +LSMAN G +TN SQ
Sbjct: 84 GNGRGGESIYGGFFEDE-SFAVKHNKEFLLSMANRGKDTNGSQF 126
>pdb|2WFJ|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G In Complex With Cyclosporin A
Length = 179
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 51/104 (49%), Gaps = 13/104 (12%)
Query: 304 GHINLELYCNVFPKTCENFMKHC--ENG---------YYNGTKFHRSIRNFMIQXX-XXX 351
G + EL+ +V PKTCENF C E G +Y FHR +++FM+Q
Sbjct: 24 GRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSE 83
Query: 352 XXXXXXESIWGKPFEDEFKPNYTHTGRGVLSMANSGPNTNTSQL 395
ESI+G FEDE H +LSMAN G +TN SQ
Sbjct: 84 GNGRGGESIYGGFFEDE-SFAVKHNKEFLLSMANRGKDTNGSQF 126
>pdb|3PMP|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
pdb|3PMP|B Chain B, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
Length = 164
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Query: 304 GHINLELYCNVFPKTCENF--MKHCENGY-YNGTKFHRSIRNFMIQXX-XXXXXXXXXES 359
G I +LY PKT +NF + ++G+ Y + FHR I FM+Q +S
Sbjct: 17 GRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGGDFTRHNGTGGKS 76
Query: 360 IWGKPFEDEFKPNYTHTGRGVLSMANSGPNTNTSQL 395
I+G+ F DE HT G+LSMAN+G NTN SQ
Sbjct: 77 IYGEKFADE-NFQVKHTKPGLLSMANAGANTNGSQF 111
>pdb|3O7T|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa
Length = 164
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Query: 304 GHINLELYCNVFPKTCENF--MKHCENGY-YNGTKFHRSIRNFMIQXX-XXXXXXXXXES 359
G I +LY PKT +NF + ++G+ Y + FHR I FM+Q +S
Sbjct: 18 GRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGGDFTRHNGTGGKS 77
Query: 360 IWGKPFEDEFKPNYTHTGRGVLSMANSGPNTNTSQL 395
I+G+ F DE HT G+LSMAN+G NTN SQ
Sbjct: 78 IYGEKFADE-NFQVKHTKPGLLSMANAGANTNGSQF 112
>pdb|3EFO|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF
SYNTAXIN 5
pdb|3EG9|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF
MEMBRIN
Length = 770
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%)
Query: 43 LIRPEISLDDRSFALYSATIMDIPSSVVYLYPHLISLHVIDPNSDEMPVQERCSFEKLQP 102
L RPEIS D+R++ M + S ++ YP L+ +H +D S +P RCS +L
Sbjct: 594 LSRPEISTDERAYQRQLVMTMGVADSQLFFYPQLLPIHTLDVKSTMLPAAVRCSESRLSE 653
Query: 103 DGAYLL 108
+G +LL
Sbjct: 654 EGIFLL 659
>pdb|1J2A|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant
pdb|1V9T|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1V9T|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1VAI|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
pdb|1VAI|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
Length = 166
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 52/103 (50%), Gaps = 4/103 (3%)
Query: 294 DGYVRLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQXXXXXXX 353
D +V L TS G+I LEL P + +NF+ + +G+YN T FHR I FMIQ
Sbjct: 4 DPHVLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQ 63
Query: 354 XXXXESIWGKPFEDEFKPNYTHTGRGVLSMANSG-PNTNTSQL 395
+ P ++E +T RG ++MA + ++ TSQ
Sbjct: 64 MQQKKP--NPPIKNEADNGLRNT-RGTIAMARTADKDSATSQF 103
>pdb|1CLH|A Chain A, Three-Dimensional Solution Structure Of Escherichia Coli
Periplasmic Cyclophilin
Length = 166
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 52/103 (50%), Gaps = 4/103 (3%)
Query: 294 DGYVRLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQXXXXXXX 353
D +V L TS G+I LEL P + +NF+ + +G+YN T FHR I FMIQ
Sbjct: 4 DPHVLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQ 63
Query: 354 XXXXESIWGKPFEDEFKPNYTHTGRGVLSMANSG-PNTNTSQL 395
+ P ++E +T RG ++MA + ++ TSQ
Sbjct: 64 MQQKKP--NPPIKNEADNGLRNT-RGTIAMARTADKDSATSQF 103
>pdb|3T1U|A Chain A, Crystal Structure Of The Complex Of Cyclophilin-a Enzyme
From Azotobacter Vinelandii With Sucafpfpna Peptide
Length = 163
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 35/50 (70%)
Query: 297 VRLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQ 346
++L T+ G I L+L+ + P+T NF ++ ++G+Y+GT FHR I FMIQ
Sbjct: 2 IKLQTNHGTITLKLFADKAPETAANFEQYVKDGHYDGTIFHRVIDGFMIQ 51
>pdb|1W74|A Chain A, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis.
pdb|1W74|B Chain B, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis
Length = 191
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 49/112 (43%), Gaps = 18/112 (16%)
Query: 299 LVTSLGHINLELYCNVFPKTCENFM-----------KHCENG----YYNGTKFHRSIRNF 343
L T+ G I + L+ N PKT NF+ ++ G +Y+G FHR I+ F
Sbjct: 28 LHTNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGF 87
Query: 344 MIQXXXXXXXXXXXESIWGKPFEDEFKPNYTHTGRGVLSMANSGPNTNTSQL 395
MIQ F DEF P +L+MAN+GP TN SQ
Sbjct: 88 MIQGGDPTGTGRGGPGYK---FADEFHPELQFDKPYLLAMANAGPGTNGSQF 136
>pdb|3S6M|A Chain A, The Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei
Length = 167
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 32/50 (64%)
Query: 297 VRLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQ 346
V L T+ G I LEL PKT ENF+ + + G+Y+GT FHR I FMIQ
Sbjct: 6 VELHTNHGVIKLELDEAKAPKTVENFLNYVKKGHYDGTIFHRVINGFMIQ 55
>pdb|2NUL|A Chain A, Peptidylprolyl Isomerase From E. Coli
pdb|2RS4|A Chain A, Nmr Strucure Of Stereo-Array Isotope Labelled (Sail)
Peptidyl-Prolyl Cis-Trans Isomerase From E. Coli (Eppib)
Length = 164
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 52/100 (52%), Gaps = 4/100 (4%)
Query: 297 VRLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQXXXXXXXXXX 356
V T+ G I ++ + + P+T +NF+ +C G+YN T FHR I FMIQ
Sbjct: 2 VTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQ--GGGFEPGM 59
Query: 357 XESIWGKPFEDEFKPNYTHTGRGVLSMANS-GPNTNTSQL 395
+ +P ++E +T RG L+MA + P++ T+Q
Sbjct: 60 KQKATKEPIKNEANNGLKNT-RGTLAMARTQAPHSATAQF 98
>pdb|1LOP|A Chain A, Cyclophilin A Complexed With
Succinyl-Ala-Pro-Ala-P-Nitroanilide
Length = 164
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 52/100 (52%), Gaps = 4/100 (4%)
Query: 297 VRLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQXXXXXXXXXX 356
V T+ G I ++ + + P+T +NF+ +C G+YN T FHR I FMIQ
Sbjct: 2 VTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQ--GGGFEPGM 59
Query: 357 XESIWGKPFEDEFKPNYTHTGRGVLSMANS-GPNTNTSQL 395
+ +P ++E +T RG L+MA + P++ T+Q
Sbjct: 60 KQKATKEPIKNEANNGLKNT-RGTLAMARTQAPHSATAQF 98
>pdb|3EH2|A Chain A, Crystal Structure Of The Human Copii-Coat Protein Sec24c
pdb|3EH2|B Chain B, Crystal Structure Of The Human Copii-Coat Protein Sec24c
pdb|3EH2|C Chain C, Crystal Structure Of The Human Copii-Coat Protein Sec24c
Length = 766
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%)
Query: 47 EISLDDRSFALYSATIMDIPSSVVYLYPHLISLHVIDPNSDEMPVQERCSFEKLQPDGAY 106
E++ DDR++ T MD+ + V+ YP L+ L S P R S E+L Y
Sbjct: 594 EVTTDDRAYVRQLVTSMDVTETNVFFYPRLLPLTKSPVESTTEPPAVRASEERLSNGDIY 653
Query: 107 LLD 109
LL+
Sbjct: 654 LLE 656
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 2 ALLHFQIPQYRPEISLDDRSFALYSATIMDIPSSVVYLYPHLI 44
+L + Q E++ DDR++ T MD+ + V+ YP L+
Sbjct: 582 CVLKSDVLQPGAEVTTDDRAYVRQLVTSMDVTETNVFFYPRLL 624
>pdb|1RWI|B Chain B, Extracellular Domain Of Mycobacterium Tuberculosis Pknd
pdb|1RWI|A Chain A, Extracellular Domain Of Mycobacterium Tuberculosis Pknd
pdb|1RWL|A Chain A, Extracellular Domain Of Mycobacterium Tuberculosis Pknd
Length = 270
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 57/113 (50%), Gaps = 11/113 (9%)
Query: 172 NGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSI 231
NGL P GLA+D +Y TD N++ + + VL ++ ++ P +A+ Q ++
Sbjct: 64 NGLYQPQGLAVDG-AGTVYVTDFN-NRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAV 121
Query: 232 MFWTDWG--EVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWID 282
+ D G V K+ G+ + + V+ + + P+G+A+D N+ +Y D
Sbjct: 122 -YVADRGNNRVVKLAAGS-----KTQTVLPFTGLNDPDGVAVD-NSGNVYVTD 167
>pdb|3VH0|A Chain A, Crystal Structure Of E. Coli Ynce Complexed With Dna
pdb|3VH0|B Chain B, Crystal Structure Of E. Coli Ynce Complexed With Dna
pdb|3VH0|C Chain C, Crystal Structure Of E. Coli Ynce Complexed With Dna
pdb|3VH0|D Chain D, Crystal Structure Of E. Coli Ynce Complexed With Dna
Length = 353
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 15/99 (15%)
Query: 117 RPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLIT 176
RPL+P ++ D K V W DG N+ K + G ++
Sbjct: 139 RPLQPRELVADDATNTVYISGIGKESVIWV-----------VDGGNIKLKTAIQNTGKMS 187
Query: 177 PDGLAIDWLTEKLYWTDSETNKLEVSSLDGK---KRKVL 212
GLA+D ++LY T+++ + + + D K ++K+L
Sbjct: 188 T-GLALDSEGKRLYTTNADGELITIDTADNKILSRKKLL 225
>pdb|2J1N|A Chain A, Osmoporin Ompc
pdb|2J1N|B Chain B, Osmoporin Ompc
pdb|2J1N|C Chain C, Osmoporin Ompc
pdb|2J4U|P Chain P, E.Coli Ompc - Camel Lactoferrin Complex
pdb|2J4U|Q Chain Q, E.Coli Ompc - Camel Lactoferrin Complex
pdb|2J4U|R Chain R, E.Coli Ompc - Camel Lactoferrin Complex
pdb|2J4U|U Chain U, E.Coli Ompc - Camel Lactoferrin Complex
pdb|2J4U|V Chain V, E.Coli Ompc - Camel Lactoferrin Complex
pdb|2J4U|W Chain W, E.Coli Ompc - Camel Lactoferrin Complex
pdb|2ZLE|D Chain D, Cryo-Em Structure Of Degp12OMP
pdb|3NB3|D Chain D, The Host Outer Membrane Proteins Ompa And Ompc Are Packed
At Specific Sites In The Shigella Phage Sf6 Virion As
Structural Components
pdb|4A8D|M Chain M, Degp Dodecamer With Bound Omp
Length = 346
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 88 EMPVQERCSFEKLQPDGAYLLDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTD 147
E Q + F L+P AYL + NL R I+K ++ GA YY+ K+M + D
Sbjct: 260 EAVAQYQFDF-GLRPSLAYLQS-KGKNLGRGYDDEDILKYVDVGAT--YYFNKNMSTYVD 315
Query: 148 HGTEMISCCTFDGNNVGSKHNVITNGLI 175
+ ++ F + + N++ GL+
Sbjct: 316 YKINLLDDNQFTRDAGINTDNIVALGLV 343
>pdb|3VGZ|A Chain A, Crystal Structure Of E. Coli Ynce
pdb|3VGZ|B Chain B, Crystal Structure Of E. Coli Ynce
pdb|3VGZ|C Chain C, Crystal Structure Of E. Coli Ynce
pdb|3VGZ|D Chain D, Crystal Structure Of E. Coli Ynce
Length = 353
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 15/99 (15%)
Query: 117 RPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLIT 176
RPL+P ++ D K V W DG N+ K + G +
Sbjct: 139 RPLQPRELVADDATNTVYISGIGKESVIWV-----------VDGGNIKLKTAIQNTGKXS 187
Query: 177 PDGLAIDWLTEKLYWTDSETNKLEVSSLDGK---KRKVL 212
GLA+D ++LY T+++ + + + D K ++K+L
Sbjct: 188 T-GLALDSEGKRLYTTNADGELITIDTADNKILSRKKLL 225
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,698,240
Number of Sequences: 62578
Number of extensions: 554542
Number of successful extensions: 1595
Number of sequences better than 100.0: 100
Number of HSP's better than 100.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1234
Number of HSP's gapped (non-prelim): 137
length of query: 395
length of database: 14,973,337
effective HSP length: 101
effective length of query: 294
effective length of database: 8,652,959
effective search space: 2543969946
effective search space used: 2543969946
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)